Figure S1. Phenotypic and genotypic characterization for all putative hybrid individuals from localities four and five. Red = A. reguloides phenotype or genotype. Blue = A. nigrocristatus phenotype or genotype. Purple = intermediate phenotype or one halpotype from each parental population. Gray = unique haplotypes, shared haplotypes, haplotypes that were not assigned in PHASE to a parental population with a probability >90%, or the gene was not sequenced. Parental phenotypes were determined by the range of a given character at localities 1-3 and 6-7 for A. reguloides and A. nigrocristatus, respectively. Hybrid/intermediate individuals were not observed outside of localities four and five. MSB:BIRD: = Museum of Southwestern Biology catalogue number for the sampled individual. Table S2. Model selection for respiratory variables using AICc (Burnham and Anderson 2002). In the case of each dependent variable, we applied the model with the best AICc score (see Table 3 for model results). All one to five parameter models that included elevation or elevation x species identity (Q-score or species) were tested; models with equal or higher AICc scores than simpler, nested models were excluded from consideration (Arnold 2010). Dependent variable Explanatory variables k n AICc ΔAICc Relative heart mass Elevation x Q-score, Q-score, mass 4 65 -821.00 0.00 Elevation, Q-score, mass 4 65 -818.60 2.40 Elevation, Q-score 3 65 -818.56 2.44 Elevation, Elevation x Q-score 3 65 -817.91 3.09 Elevation x Q-score, Q-score, sex 4 65 -814.05 6.95 Elevation x Q-score, Q-score 3 65 -813.86 7.14 Elevation 2 65 -813.10 7.90 Elevation x Q-score, mass 3 65 -812.36 8.64 Elevation x Q-score, sex 3 65 -809.19 11.81 Elevation x Q-score 2 65 -808.91 12.09 [Hb] Hct Elevation x species, species, mass, sex 6 48 40.77 0.00 Elevation x species, mass, sex 5 48 40.94 0.16 Elevation x species, species 4 48 41.30 0.53 Elevation x species 3 48 42.23 1.46 Elevation, species, mass, sex 5 48 43.16 2.39 Elevation, species 3 48 43.27 2.50 Elevation, mass 3 48 48.85 8.08 Elevation 2 48 49.37 8.60 Elevation x species, mass, sex 5 49 -312.89 0.00 Elevation, mass, sex, species 5 49 -312.08 0.81 Elevation x species, sex 4 49 -310.88 2.01 Elevation, sex, species 4 49 -310.52 2.37 Elevation, sex 3 49 -310.21 2.68 Elevation x species 3 49 -309.91 2.99 Elevation, species 3 49 -309.68 3.21 Elevation 2 49 -309.42 3.47 MCHC Elevation x species, species 4 48 49.91 0.00 Elevation x species 3 48 52.03 2.12 Elevation x species, mass 4 48 52.65 2.74 Elevation x species, sex 4 48 53.07 3.16 Elevation, species 3 48 53.14 3.23