ddi12179-sup-0001-AppendixS1-S2

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SUPPORTING INFORMATION
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Additional Supporting Information may be found in the online version of this article:
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Appendix S1: Underlying assumptions of the Koopowitz stochastic extinction model.
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It is important to note that the Koopowitz extinction model has several underlying
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assumptions (Koopowitz et al., 1994). First, the model assumes that Lepanthes spp. are
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distributed randomly with respect to forest conversion patterns. This implies that all species are
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equally prone to extinction due to habitat loss. Second, the model assumes that all forests are
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converted equally. This indicates that primary and secondary forests, for example, are converted
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at the same rates and that species occurring in either type are equally vulnerable to habitat loss.
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Third, the model assumes that habitat conversion rates are reasonably accurate. This assumption
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suggests that the habitat conversion rates in the near future will remain similar to the rates of the
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recent past. Fourth, the model assumes that the taxonomy used by botanists is consistent. This
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assumption infers that the number of species in a given area is not affected by differences in how
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species are described. Fifth, the model assumes that habitat conversions are complete and render
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the habitat sterile. This assumption indicates that deforestation of an area is equivalent to
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complete loss of suitable habitat in that area. Sixth, the model assumes that the sites occupied by
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a species are smaller than the areas being converted. This assumption implies that when a patch
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of habitat is converted, all individuals at that site are lost. Seventh, the model assumes that the
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number of sites is static. This assumption denotes that there will be no significant dispersal of
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propagules to new sites within the time frame of the analysis. Lastly, the model assumes that the
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species distribution profiles are accurate. This assumption suggests that the collections for
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individual species are representative of the actual distribution. Despite these assumptions, the
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model’s predictive capabilities should be substantial provided robust data sets are used in the
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analysis. For additional discussion of underlying assumptions in the Koopowitz stochastic
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extinction model, see Koopowitz (1992) and Koopowitz et al. (1994).
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References
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Koopowitz, H. (1992) A stochastic model for the extinction of tropical orchids. Selbyana, 13,
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115-122.
Koopowitz, H., Thornhill, A.D. & Andersen, M. (1994) A general stochastic model for the
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prediction of biodiversity losses based on habitat conversion. Conservation Biology, 8,
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425-438.
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Appendix S2: Sources of distribution data used in this analysis.
Distribution data sources for this analysis included collection records from numerous
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herbaria and botanical gardens including Missouri Botanical Garden, New York Botanical
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Garden, Lankester Botanical Garden, Royal Botanic Gardens, Kew, Selby Botanical Garden, the
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Field Museum Herbarium, the Smithsonian Museum Herbarium, the American Museum of
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Natural History Herbarium, the University of Wisconsin Herbarium, the Oakes Ames Orchid
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Herbarium, and the University of Puerto Rico Herbarium. Additionally, regional floras and plant
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checklists (e.g. Ames & Correll, 1952; Schweinfurth, 1958; Foldats, 1970; Hamer, 1974;
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Williams et al., 1980; Werkhoven, 1986; Ackerman, 1995; Salazar & Soto-Arenas, 1996; Balick
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et al., 2000; Archila-Morales, 2001; Berry et al., 2003; Farfán et al., 2003; Luer, 2003;
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Llamacho & Larramendi, 2005; Nelson-Sutherland, 2008; Luer, 2009, 2010; Luer & Thoerle,
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2012), as well as scientific publications on specific species or groups of species (e.g.
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Hespenheide, 1973; Luer, 1986; Carnevali & de Carnevali, 1993; Catling & Salazar, 1994; Luer,
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1994, 1996, 1997, 1999, 2000; Ackerman et al., 2001; Pupulin, 2001; Blanco, 2003; Bogarín &
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Fernández, 2010; Pupulin et al., 2010; Bogarín et al., 2012; Crain & Tremblay, 2012) were
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consulted for distribution data.
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References
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Ackerman, J.D. (1995) An Orchid Flora of Puerto Rico and the Virgin Islands. The New York
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Botanical Garden, Bronx, New York.
Ackerman, J.D., Tremblay, R.L. & Whitten, W.M. (2001) Notes on the Caribbean orchid flora.
III. New species of Basiphyllaea and Lepanthes. Lindleyana, 16, 13-16.
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Ames, O. & Correll, D.S. (1952) Orchids of Guatemala. Fieldiana: Botany, 26, 194-205.
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Archila-Morales, F.L. (2001) Lepanthes de Guatemala. Editorial Kamar, Guatemala City,
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Guatemala.
Balick, M.J., Nee, M.H. & Atha, D.E. (2000) Checklist of the Vascular Plants of Belize With
Common Names and Uses. The New York Botanical Garden Press, Bronx, New York.
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Berry, P.E., Yatskievych, K. & Holst, B.K. (eds.) (2003) Flora of the Venezuelan Guayana,
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Volume 7, Myrtaceae-Plumbaginaceae. Missouri Botanical Garden Press, St. Louis,
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Missouri.
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Blanco, M.A. (2003) Lepanthes gerardensis (Orchidaceae), a new species from Costa Rica.
Lankesteriana, 8, 19-22.
Bogarín, D. & Fernández, M. (2010) Lepanthes arenasiana (Pleurothallidinae: Orchidaceae), a
new species from Costa Rica. Lankesteriana, 9, 487-489.
Bogarín, D., Karremans, A.P. & Pupulin, F. (2012) Three new Lepanthes (Orchidaceae:
Pleurothallidinae) from south-east Costa Rica. Lankesteriana, 12, 107-114.
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Carnevali, G. & de Carnevali, I.R. (1993) New or noteworthy orchids for the Venezuelan flora
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IX: new taxa, new records, and nomenclatural changes, mainly from the Guayana Shield
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and northern Amazonas. Novon, 3, 102-125.
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Catling, P.M. & Salazar, G.A. (1994) Taxonomic notes on Lepanthes disticha (Orchidaceae:
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Pleurothallidinae) and its allies in Mexico and northern Central America. Acta Botánica
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Mexicana, 28, 41-55.
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Crain, B.J. & Tremblay, R.L. (2012) Update on the distribution of Lepanthes caritensis, a rare
Puerto Rican endemic orchid. Endangered Species Research, 18, 89-94.
Farfán, J., Otero, J.T. & Luer, C.A. (2003) Especies de Lepanthes (Orchidaceae) de Colombia.
Biota Colombiana, 4, 33-47.
Foldats, E. (1970) Flora de Venezuela: Orchidaceae. Instituto Botanico, Dirreccion de Recursos
Naturales Renovables, Ministerio de Agricultura y Cria, Caracas, Venezuela.
Hamer, F. (1974) Las Orquideas de El Salvador. Ministerio de Educacion, Direccion de
Publicaciones, San Salvador, El Salvador.
Hespenheide, H.A. (1973) A revision of the West Indian species of Lepanthes (Orchidaceae). III.
Cuba. Brittonia, 25, 257-283.
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Llamacho, J.A. & Larramendi, J.A. (2005) The Orchids of Cuba. Greta Editores, Lledia, Spain.
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Luer, C.A. (1986) A review of some of the species of Lepanthes from Venezuela (Orchidaceae).
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Phytologia, 59, 443-450.
Luer, C.A. (1994) Icones Pleurothallinarum XI: Systematics of Lepanthes Subgenus
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Brachycladium and Pleurothallis Subgenus Aenigma, Subgenus Elongatia, Subgenus
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Kraenzlinella; Addenda to Dracula, Lepanthopsis, Myoxanthus, Platystele,
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Porroglossum, and Trisetella. Missouri Botanical Garden Press, St. Louis, Missouri.
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Luer, C.A. (1996) Icones Pleurothallidinarum XIV: Systematics of Draconanthes, Lepanthes
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Subgenus Marsipanthes and Subgenus Lepanthes of Ecuador; Addenda to
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Brachionidium, Lepanthes Subgen. Brachycladium, Platystele, Pleurothallis Subgen.
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Aenigma, and Subgen. Ancipitia. Missouri Botanical Garden Press, St. Louis, Missouri.
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Luer, C.A. (1997) Icones Pleruothallidinarum XV: Systematics of Trichosalpinx; Addenda to
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Dracula, Masdevallia, Myoxanthus, and Scaphocepalum; Corregenda to Lepanthes of
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Ecuador. Missouri Botanical Garden Press, St. Louis, Missouri.
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Luer, C.A. (1999) Icones Pleurothallidinarum XVIII: Systematics of Pleurothallis Subgen.
Pleurothallis Sect. Pleurothallis Subsect. Antenniferae, Subsect. Longiracemosae,
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Subsect. Macrophyllae-Racemosae, Subsect. Perplexae, Subgen. Pseudostelis, Subgen.
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Acuminatia; Addenda to Dracula, Lepanthes, Masdevallia, and Pleurothallis;
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Miscellaneous New Species of Dryadella, Lepanthes, and Pleurothallis. Missouri
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Botanical Garden Press, St. Louis, Missouri.
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Luer, C.A. (2000) Icones Pleurothallidinarum XX: Systematics of Jostia, Andinia, Barbosella,
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Barbrodria, & Pleurothallis Subgen. Antill, Subgen. Effusia, Subgen. Restrepioidia.
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Luer, C.A. (2003) Lepanthes. Manual de Plantas de Costa Rica, Volumen III, Monocotiledóneas
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(Orchidaceae-Zingiberaceae) (ed. by B.E. Hammel, M.H. Grayum, C. Herrera and N.
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Williams, L.O., Allen, P.H. & Dressler, R.L. (1980) Orchids of Panama: A Facsimile Reprint of
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