ADVANCED TECHNOLOGY CORE LABORATORIES: Antibody-based Proteomics Core Request Form Dan L. Dancun Cancer Center Shixia Huang, Ph.D., Director Alkek Building for Biomedical Research R507 shixiah@bcm.edu 713 798 8722 Antibody Array Services DLDCC Price* Non-DLDCC Price* RPPA Set Up Fee $85 $95 RPPA Lysis Buffer $34 $45 Core assisted preparation of tissue or cell lysates (Includes processing, protein quantitation and aliquoting) RPPA with 180 validated antibodies* (1440 lysate/slide format) $25/sample $100/sample $0.64/lysate/antibody $115/lysate for 180 antibodies $2.56/lysate/antibody $460.80/lysate for 180 antibodies RPPA with 180 validated antibodies* (2880 lysate/slide format) $0.37/lysate/antibody $66.60/lysate for 180 antibodies $1.48/lysate/antibody $266.40/lysate for 180 antibodies Antibody aliquots for investigator immunoblot validation of RPPA results (from antibody inventory used for RPPA) Test print $40/antibody $40/antibody $10/sample $40/sample *number of total antibodies per RPPA run may vary Dec 2012 Antibody Array Services Protein labeling, purification, and QC (including reagents, Sigma array platform) Protein labeling, purification, and QC (including reagents, ClonTech array platform) DLDCC Price* Non-DLDCC Price* $270/sample $318/sample $295/sample $347/sample Array and labeling experiments: this service includes time, array, reagents, labeling, purification, QC, and cleanup etc $1366/array (Clontech BD500), $1574/array (Sigma XPRESS 725) (two dyes), $1198/array (Sigma 725) single dye $864/array (Sigma, gene regulation array) $1527 (Clontech) $1724 (Sigma XPRESS 725) (two dyes) $1410/array (Sigma 725) (single dye) $1016 (Sigma, Gene regulation) Array and labeling experiments: this service includes time, array, reagents, labeling, purification, and cleanup etc Raybiotech >10 samples Raybiotech, > 40 samples $589/sample (Human L507, Raybiotech) $538/sample (Mouse L308, Raybiotech) $522/sample, human, $481/sample, mouse $489/sample, human, $451/sample, mouse $825/array/sample (2-8 arrays) $716/array/sample (10 arrays) $693/sample $633/sample $614/sample, $565/sample $575 (human), $530 (mouse) $1017/array/sample (2-8 arrays) $803/array/sample (>10 arrays) $1395/array/sample (2-8 arrays) $1212/array/sample (10 arrays) $1587/array/sample (2-8 arrays) $1375/array/sample (10 arrays) Array and labeling experiments* (Fullmoon Explorer $1153/array/sample (2-8 arrays) $907/array/sample (10 arrays) array): this service includes time, array, reagents, labeling, purification, QC, and cleanup etc Array and labeling experiments* (Fullmoon P53 $854/array/sample (2-8 arrays) $725/array/sample (10 arrays) array): this service includes time, array, reagents, labeling, purification, QC, and cleanup etc Array and labeling experiments* (Fullmoon Apoptosis $815/array/sample (2-8 arrays) $725/array/sample (10 arrays) array): this service includes time, array, reagents, labeling, purification, QC, and cleanup etc $1344/array/sample (2-8 arrays) $1070/array/sample (10 arrays) Array and labeling experiments* (Fullmoon Phospho Apoptosis array): this service includes time, array, reagents, labeling, purification, QC, and cleanup etc $949/array/sample (2-8 arrays) $829/array/sample (10 arrays) $1141/array/sample (2-8 arrays) $992/array/sample (10 arrays) Array scan $30/array $40/array Array and labeling experiments* (Fullmoon Insulin array): this service includes time, array, reagents, labeling, purification, QC, and cleanup etc Array and labeling experiments* (Fullmoon Phospho Explorer array): this service includes time, array, reagents, labeling, purification, QC, and cleanup etc Array image analysis $40/array (For Full Moon, Sigma-Aldrich, and Raybiotech slides) Array Image Analysis $400/array (For Invitrogen ProtoArray slides Data processing tool from RayBiotech (optional based on analysis need downstream) Data Processing** using Raybiotech's tool, Clontech's analysis tool, or excel fold calculation $428/set of =< 4 arrays $1003/array/sample (2-8 arrays) $862/array/sample (10 arrays) $1007/array/sample (2-8 arrays) $862/array/sample (10 arrays) $60/array $500/array $250 (Human L507)/project $150 (Mouse L308)/project $570/set of =< 4 arrays *Please note this price is an estimate based on the protocol on time and reagent required at the time this estimate is made. Please consult the director for the actual price at the time of your project to be performed. *We encourage PIs to work with a statistician to analyze the data. In the case you only have a small number of samples and would like to get a quick fold difference using excel spread sheet or the companies' tools, we will process the data as requested. Examples of Luminex Assay Services* Analytes DLDCC Price Non-DLDCC Price Luminex assays Cat# RCYTO-80K-05, TNF-alpha, IL-1 beta, IL-10, GMCSF, VEGF Cat# RCYTO-80K-PMX24, GM-CSF, GRO/KC, IFNg, IL1a, IL-1b, IL-2, IL-4, IL-5, IL-6, IL-9, IL-10, IL-12p70, IL13, IL-17, IL-18, MCP-1, TNFa, G-CSF, IP-10, MIP-1a, RANTES, Leptin, Eotaxin, VEGF Cat# TGFB-64K-01, TGFB1 Cat# TGFB-64K-03, TGFB1, TGFB2, TGFB3 Plate reading and data exporting varies 802-5500 855-6000 5 1334 1391 24 1 3 1-20 analytes/plate 3290 802 1149 $120 3363 855 1207 $145 Plate reading and data exporting 21 or more analytes/plate $150 $180 *Price in this category is highly dependent on the reagent price. It will change when reagents are ordered at different times *This form provides some examples. For other Luminex assays, please contact Core Director for estimate. Sample preparation /processing Cell pellet preparation from dishes Sample preparation from pellets Sample preparation from tissues Protein assay (Bradford/BCA) DLDCC Price Non-DLDCC Price $60/sample $60/sample $75/sample $60/plate $65/set of =<20 samples for first set of tubes, $23 for each subsequent of tubes of the same sample set $70/sample $70/sample $90/sample $70/plate $80/set of =<20 samples for the first set of tubes, $27 for each subsequent of tubes of the same sample set Sample processing: centrifugation and transferring samples to plates from tubes (if we have tubes with the exact amount we need) $80/plate of <=40 samples for the first plate, $23 to each subsequent plate of the same sample set $95/plate of =<40 samples for first plate and $27 to each subsequent plate of the same sample set Plates (for users who aliquot their own samples but don't have plates) $4/plate Sample processing: centrifugation, labeling tubes and transferring to tubes $5/plate Dec-12 Self or Assisted Services DLDCC Price* Non-DLDCC Price* $100/time $15 $120 $20 $80 $80 $50 $80 $140 $80 $55 $100 $100 $70 $95 $160 $95 $80 $20 $25 Image analysis on protein arrays by users Initial training (1-2 hours), 5 trainings are required within two months to become an unassisated user Using software/computer (per hour)* Luminex plate reading and analysis LPRS training (required prior to making any bookings) Setup/Shut down instrument by Core Plate reading and analysis by users (per hour)* Plate reading - assisted by core (per hour) Data Exporting-Cytokine Assays (per plate) Data Exporting-Phosphoprotein Assays (per plate) Use of Core Luminex Equipment (per plate) Filter Plate (for users who need extra plate) Exceeding the hour for 10 minutes will be counted for one hour