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Zhang B, Schmoyer D, Kirov S, Snoddy J. GOTree Machine (GOTM): a web-based
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Zhang B, Kirov S, Snoddy J. WebGestalt: an integrated system for exploring gene sets in
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Kirov SA, Peng X, Baker E, Schmoyer D, Zhang B, Snoddy J. GeneKeyDB: a
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Baldwin NE, Chesler EJ, Kirov S, Langston MA, Snoddy JR, Williams RW, Zhang B.
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Pan C, Oda Y, Lankford PK, Zhang B, Samatova NF, Pelletier DA, Harwood CS,
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Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond
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1
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Chen X, Wang L, Smith JD, Zhang B. Supervised principal component analysis for gene
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Chourey K, Thompson MR, Shah M, Zhang B, Verberkmoes NC, Thompson DK,
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Unell M, Abraham P, Shah M, Zhang B, Rückert C, Verberkmoes N, Jansson J. Impact
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Codreanu SG, Zhang B, Sobecki SM, Billheimer DD, Liebler DC. Global analysis of
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Ball HL, Zhang B, Riches JJ, Gandhi R, Li J, Rommens JM, Myers JS. ShwachmanBodian Diamond syndrome is a multi-functional protein implicated in cellular stress
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Li J, Duncan DT, Zhang B. CanProVar: a human cancer proteome variation database.
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Wylie CJ, Hendricks TJ, Zhang B, Wang L, Lu P, Leahy P, Fox S, Maeno H, Deneris
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2
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Morabito MV, Ulbricht RJ, O'Neil RT, Airey DC, Lu P, Zhang B, Wang L, Emeson RB.
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Thompson DK, Chourey K, Wickham GS, Thieman SB, VerBerkmoes NC, Zhang B,
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Shi Z, Derow CK, Zhang B. Co-expression module analysis reveals biological processes,
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Angel PM, Nusinow D, Brown CB, Violette K, Barnett JV, Zhang B, Baldwin HS,
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Lu H, Wang X, Pullen M, Guan H, Chen H, Sahu S, Zhang B, Chen H, Williams RW,
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Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B. A
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Shi Z, Zhang B. Fast network centrality analysis using GPUs. BMC Bioinformatics.
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Zhang B, Shi Z, Duncan DT, Prodduturi N, Marnett LJ, Liebler DC. Relating protein
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Shi M, Zhang B. Semi-supervised learning improves gene expression-based prediction of
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Halvey PJ, Zhang B, Coffey R, Liebler DC, Slebos RJC. Proteomic consequences of a
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Liu Q, Guo Y, Li J, Long J, Zhang B, Shyr Y. Steps to ensure accuracy in genotype and
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Sousa JF, Ham AL, Whitwell C, Nam KT, Lee HJ, Yang HK, Kim WH, Zhang B, Li M,
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Hardaway JA, Hardie SL, Whitaker SM, Baas SR, Zhang B, Bermingham DP,
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3
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Wang L, Chen X, Zhang B. Statistical analysis of patient-specific pathway activities via
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Hoshino D, Jourquin J, Emmons SW, Miller T, Goldgof M, Costello K, Tyson DR,
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Wang X, Slebos RJC, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B. Protein
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Shi M, Beauchamp RD, Zhang B. A network-based gene expression signature informs
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Al-Greene NT, Means AL, Lu P, Jiang A, Schmidt CR, Chakravarthy AB, Merchant NB,
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Franklin JL, Rankin CR, Levy S, Snoddy JR, Zhang B, Washington MK, Michael TJ,
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Chen YY, Chambers MC, Li M, Ham AJ, Turner JL, Zhang B, Tabb DL. IDPQuantify:
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Wang J, Qian J, Hoeksema MD, Zou Y, Espinosa AV, Rahman JS, Zhang B*, Massion
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Liu Q, Ullery J, Zhu J, Liebler DC, Marnett LJ, Zhang B. RNA-Seq data analysis at the
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Wang X, Zhang B. customProDB: an R package for generating customized protein
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4
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Wang J, Duncan D, Shi Z, Zhang B. WEB-based Gene SeT AnaLysis Toolkit
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Shi Z, Wang J, Zhang B. NetGestalt: integrating multidimensional omics data over
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Zhu X, Liang J, Shrubsole MJ, Ness RM, Cai Q, Long J, Chen Z, Li G, Wiese D, Zhang
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Hardaway JA, Wang J, Fleming PA, Fleming KA, Whitaker SM, Nackenoff A,
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Ye R, Carneiro AM, Han Q, Airey D, Sanders-Bush E, Zhang B, Lu L, Williams RW,
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Ye R, Carneiro AM, Airey D, Sanders-Bush E, Williams RW, Lu L, Wang J, Zhang B,
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Halvey PJ, Wang X, Wang J, Bhat AA, Dhawan P, Li M, Zhang B, Liebler DC, Slebos
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Codreanu SG, Ullery JC, Zhu J, Tallman KA, Beavers WN, Porter NA, Marnett LJ,
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Tripathi MK, Deane NG, Zhu J, An H, Mima S, Wang X, Padmanabhan S, Shi Z,
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Wang X, Zhang B. Integrating genomic, transcriptomic and interactome data to improve
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Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ,
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6