Online Appendix for the following JACC: Cardiovascular Imaging article TITLE: Molecular Imaging of Bone Marrow Mononuclear Cell Survival and Homing in Murine Peripheral Artery Disease AUTHORS: Koen E.A. van der Bogt, Alwine A. Hellingman, Maarten A. Lijkwan, Ernst-Jan Bos, Margreet R. de Vries, Juliaan R.M. van Rappard, Michael P. Fischbein, Paul H. Quax, Robert C. Robbins, Jaap F. Hamming, Joseph C. Wu APPENDIX SUPPLEMENTAL METHODS Preparation and characterization of bone marrow mononuclear cells (MNCs). The long bones were explanted, washed, and flushed with PBS using a 25-gauge needle to collect bone marrow. After passing through a 70 μm strainer, the isolate was centrifuged at 1200 rpm for 5 minutes, washed, and resuspended into PBS. To acquire the MNC fraction, the bone marrow isolate was centrifuged for 40 minutes at 1600 rpm using a 14 mL tube with 3 mL Ficoll-Paque Premium (GE Healthcare, Piscataway, NJ, USA) gradient and 4 mL cell/saline suspension, as described (5). MNCs were prepared freshly before application. Characterization of MNCs by flow cytometry. Cells were incubated in 2% FBS/PBS at 4°C for 30 min with 1 μL of APC-conjugated anti-CD31 (eBioscience), anti-CD45 (BD Biosciences), and anti-Gr-1 (BD Biosciences), or PE-conjugated anti-CD34 (eBioscience), anti-CD11b (BD Biosciences), anti-Flk-1, anti-Sca-1 (both eBioscience), and anti-NK1.1 (BD Biosciences), and 1 processed through a FACSCalibur system (BD, San Jose, CA, USA) according to the manufacturer’s protocol. Ex vivo ELISA for apoptosis on digested muscle. To further explore short-term effect of cell therapy on paw perfusion, we performed an apoptosis-specific ELISA on the affected gastrocnemius muscles. The selected muscle was explanted, digested using a stator-rotator homogenizer, and lysed. ELISA was performed directly on the supernatant to quantify histoneassociated DNA fragments (mono- and oligonucleosomes), marking early apoptotic cells (Cell Death Detection ELISA, Roche Applied Science, Indianapolis, IN). Post-mortem immunohistochemistry. Immunohistochemistry was performed to visualize smooth muscle cell layers of collateral arteries with an antibody against smooth muscle actin. Furthermore, with an antibody against GFP, GFP+-MNCs were traced in the ischemic skeletal muscle. Five µm-thick paraffin-embedded sections of skeletal muscle fixed with 4% formaldehyde were used. These were re-hydrated and endogenous peroxidase activity was blocked for 20 minutes in methanol containing 0.3% hydrogen peroxide. Skeletal muscle slides were stained with monoclonal anti-α smooth muscle actin (mouse anti-human, DAKO, dilution 1:800). Antigen retrieval was not necessary and sections were incubated overnight with primary antibody. Rabbit anti-mouse HRP (DAKO, dilution 1:300) was used as a secondary antibody. For the negative control, an isotype control instead of the primary antibody was used. The signal was detected using NovaRED substrate kit (Vector laboratories) and sections were counterstained with hematoxylin. Stainings were quantified from randomly photographed sections using image analysis (ImageJ). For tracing of GFP+-MNCs, adductor muscle slides 2 were incubated with anti-GFP (rabbit anti-mouse, Invitrogen, dilution 1:4000) without antigen retrieval. After overnight incubation, labeling was followed by a biotin-conjugated secondary antibody (donkey anti-rabbit, dilution 1:300). As a positive control, a slide of GFP+ cardiac muscle tissue was used. Statistical analysis. Statistics were calculated using SPSS 16.0 (SPSS Inc., Chicago, IL, USA). Descriptive statistics included mean and standard error. Comparison between groups was performed using a 1-way between groups ANOVA, or 1-way repeated measures ANOVA when compared over time. Significance was assumed according to the Bonferroni-Holm’s procedure when more than 2 groups were compared. P-values were considered statistically significant if P<0.05. Correlation was tested using a simple regression model according to standard Excel software. 3 SUPPLEMENTAL FIGURES Supplemental Figure 1: Quantification of short-term apoptotic rates in gastrocnemius muscles of MNC treated animals. ELISA for histone-associated DNA fragments in mono- and oligonucleosomes of digested gastrocnemius muscles revealed an almost 3-fold increase in apoptosis following left femoral artery ligation and PBS treatment as compared to the healthy contralateral muscle as well as compared to MNC treated animals (* indicates P<0.05). 4 Supplemental Figure 2: Ex vivo confirmation of in vivo MNC distribution patterns. (A) Graphic in vivo representation of MNC retention in liver, spleen, and bone marrow. Removal of the skin surprisingly leads to a remarkable reduction of signal intensity from the scarred area. (B) After explantation of various organs and ex vivo BLI, the signal that was previously observed from the injured area during in vivo experiments appeared to be a cumulative signal from MNC retention from skin, subcutaneous tissue, and muscle. (C) To confirm the BLI signals from the bone marrow, the marrow was flushed from the bone and processed through flow cytometry for GFP+ donor cells. The flow cytometry results correlated to the BLI results as the recipient bone marrow indeed contained Fluc+-GFP+ donor MNCs. Scale bars represent BLI signal in photons/s/cm2/sr. 5 Supplemental Figure 3: Influence on vascular occlusion method on cell survival and paw perfusion. (A) A faster endogenous restoration in paw perfusion is observed in the suture ligation group as compared to the electro-coagulation group (p=NS, n=4/group). (B) Suture ligation seems to provide a slightly more favorable environment for transplanted MNC survival, as non-significant increased BLI signals are observed on day 3 as compared to the electrocoagulation group (p=NS, n=4/group). 6