EPIGEN NGS & DATA ANALYSIS WORKSHOP. Istituto di Genomica Applicata, Udine – April 9-11, 2014
Preliminary Program
Day 1: April 9 - Introduction
14.30-14.35
Welcome
14.35-14:50
The Italian Epigenomics Flagship Project EPIGEN:
research & training activities
14:50-15:50
DNA sequencing and the new frontiers of
genomics in biomedical research
15:50-16:10
Coffee break
16:10-17:10
Basics of Illumina NGS sequencing and visit to IGA
lab
17:10-17:40
Infrastructure and IT for NGS -Visit to IGA
computer
Day 2: April 10 - Practical Sessions
09.00-10.30
Overview of Illumina sample preparation
10.30-11.15
11.15-11.30
11.30-12.30
12.30-13.15
13.15-14.15
14.15-15.45
15.45-16.00
16.00-17.45
To confirm
Coffee break
Wet Lab pratical session on Illumina workflow:
how to make the flowcell
To confirm
Lunch
Wet Lab pratical session on Illumina workflow:
starting an HiSeq2000 run
Coffee break
Wet Lab pratical session on Illumina workflow:
starting an HiSeq2000 run
Day 3: April 11 - Bioinformatic tools & EPIGEN pipelines
9:00-9:45
Alignment to a reference
9:45-10:30
Analysis of DNA methylation -I
10:30-10:45
Coffee break
10:45-11:30
Analysis of DNA methylation - II
11:30-12:00
12:00-13:00
13:00-14:30
14:30-15:30
15:30-16:30
16:30-16:45
16:45-17:30
EPIGEN data repository and HPC infrastructure at
CINECA
Speaker
Session type
Macino
Talk
Morgante
Talk
Cattonaro
Talk
Gervaso
Talk
Cattonaro,
Aleo,Vendramin
To confirm
Talks
IGA Team
Pratical
Illumina
Talk
IGA Team
Practical
IGA Team
Practical
Del Fabbro-Scalabrin
Policriti
Talk
Talk
Valle
Talk
Castrignanò
Talk
D’Antonio
RAP: The EPIGEN RNA-Seq pipeline
Lunch
Galaxy@Epigen: the EPIGEN ChIP-Seq analysis Zambelli
workbench
WEP: The EPIGEN Whole exome sequencing
pipeline
Coffee break
Systems Biology approaches for the integration of
NGS data to identify gene regulatory networks.
Talk/pratical
Talk
Talk
D’Onorio de Meo
Talk
Mutarelli
Talk