GENETIC FINGERPRINT ESTABLISHED FOR THE SELECTED ALFALFA GENOTYPES USING MOLECULAR MARKERS OBJECTIVES Assessment intra- and interspecific variability at molecular level The work methods used were: • Molecular techniques of genetic variability detection (extraction of genomic DNA, enzymatic amplification through the PCR reaction using 13 RAPD, 3 SSR and 5 ISSR primers, analysis of the reaction products through agarose gel electrophoresis); • Statistical-mathematical methods of result processing and interpretation. Assessment of interspecific variability using ISSR molecular markers Polymorphism rate for the alfalfa genotypes using ISSR primers No. Primer crt. 1 A-12 2 A-13 3 A-17 4 A-21 5 UBC-818 Nucleotide sequence (GA)6CC (GT)6CC (GTG)3GC (CA)6AC (CA)7G Bands No. Polymor- Bands PIC PI x s Total Polymor ph (%) (pb) 25 20 84,00 220-1650 0,210+0,040 3,367 27 19 70,37 150-1510 0,292+0,028 5,544 31 31 100,00 240-2090 0,370+0,019 11,462 15 9 60,00 280-1320 0,324+0,052 2,918 19 16 84,21 300-2120 0,358+0,031 5,731 x UPGMA clustering of alfalfa genotypes using the ISSR primers Satelit F 1109-99 Cosmina Granat F 105-90 Sigma F 1822-06 Super F 1615-04 F 1206-00 F 1306-01 F 270-91 F 1413-02 F 1310-01 F 1111-99 Pastoral Magnat Alina Stolo 13 Viking Cristal Dorina Opal F 219-91 Coral Selena MF 42-96 Saturn Venus F 907-97 1.00 0.95 0.90 0.85 0.80 0.75 Coeficient de similaritate genetica 0.70 0.65 0.60 No.crt Specific alleles No.ct Specific alleles 1 2 3 4 5 6 7 8 9 10 11 A 12 -220 A 12 -280 A 12 -650 A 12 -820 A 12 -950 A 13 -330 A 13 -440 A 13 -550 A 13 -600 A 13 -1017 A 13 -1190 12 13 14 15 16 17 18 19 20 21 22 A 13 -1259 A 13 -1510 A 21 -280 A 21 -410 A 21 -520 A 21 -750 A 21 -1080 A 21 -1180 UBC 818 -300 UBC 818 -510 UBC 818 -760 We identified 22 alleles present in all the 30 genotypes studied. These alleles may be considered ISSR specific markers for alfalfa Assessment of intergenotypical variability using RAPD molecular markers Polymorphism rate for the alfalfa genotypes using RAPD primers No. Primer Nucleotide Sequence (5’-3’) crt. 1 2 3 4 5 6 7 8 9 10 11 12 13 B -07 G -03 G -04 G -06 G -10 G -16 G -17 G -18 G -19 L -03 L -07 L-12 L -14 GGTGACGCAG GAGCCCTCCA AGCGTGTCTG GTGCCTAACC AGGGCCGTCT AGCGTCCTCC ACGACCGACA GGCTCATGTG GTCAGGGCAA CCAGCAGCTT AGGCGGGAAC GGGCGGTACT GTGACAGGCT Bands No. Polymor Size PIC Total Polymorf (%) bands (pb) x sx 9 7 12 10 15 11 14 12 13 10 21 15 11 8 4 10 7 12 9 9 9 13 8 21 15 11 88,88 57,14 83,33 70,00 80,00 81,80 64,28 75,00 100,00 80,00 100,00 100,00 100,00 190-1250 320-900 300-1250 220-1000 300-1500 300-1000 180-1100 190-1250 270-1350 260-750 170-1590 280-1300 230-1130 0,188+0,053 0,121+0,039 0,260+0,042 0,308+0,057 0,196+0,036 0,310+0,059 0,282+0,049 0,221+0,040 0,337+0,048 0,212+0,044 0,277+0,032 0,250+0,037 0,345+0,048 PI 1,504 0,484 2,600 2,153 2,353 2,789 3,100 2,429 4,382 1,698 5,824 3,751 3,796 UPGMA clustering of alfalfa genotypes using RAPD primers Satelit F 105-90 Sigma Granat F 1615-04 F 1109-99 F 1822-06 Cosmina F 1306-01 Super F 270-91 F 1206-00 F 1310-01 F 1111-99 Pastoral Magnat MF 42-96 Selena Alina Viking Cristal Opal Stolo 13 Dorina Coral F 219-91 Saturn F 907-97 Venus F 1413-02 1.00 0.95 0.90 0.85 0.80 0.75 Coeficient de similaritate genetica 0.70 0.65 0.60 Specific RAPD alleles identified in studied alfalfa genotypes No.crt Specific alleles 1 2 3 4 5 6 7 8 9 10 B 07 – 1250 pb G 03 – 400 pb G 03 – 800 pb G 03 – 900 pb G 04 – 500 pb G 04 – 700 pb G 06 – 220 pb G 06 – 360 pb G 06 – 500 pb G 10 – 330 pb Nr.crt Specific alleles 11 12 13 14 15 16 17 18 19 20 G 10 - 380 pb G 10 - 750 pb G 16 - 480 pb G 16 - 950 pb G 17 - 180 pb G 17 - 400 pb G 17 - 700 pb G 18 - 670 pb L 03 - 480 pb L 03 -750 pb The 20 alleles identified in all the 30 genotypes studied may be considered RAPD specific markers for alfalfa The results of the analyses performed using two primer categories proved that we identified, in some genotypes from the collection studied, specific DNA fragments These bands may be used as DNA markers in the identification of alfalfa genotypes No.crt Genotype Specific No.crt Genotype alleles 1 2 3 4 5 6 7 8 9 10 Pastoral MF 42-96 F 1111-99 F 1306-01 F 1206-00 A 12 - 1320 G 18 - 1000 L 07 - 540 L 07 - 580 G 04 - 600 G 06 - 1000 A 12 - 300 G 10 - 650 G 17 - 1100 G 19 - 900 Specific alleles 11 12 13 14 15 16 17 18 19 20 Stolo 13 Sigma Cosmina Granat F 907-97 Saturn Dorina Coral F 1413-02 G 03 - 500 G 18 - 1250 A 12 - 490 A 12 - 744 A 21 - 780 A 21 - 1150 G 10 -350 G 10 - 1300 L 14 - 1000 L 12 -450 In order to assess the intraspecific genetic diversity, we tested 16 ISSR primers and used only three of them: AFca 11, AFct 32 and AFct 45. Cod AFct32 AFct45 AFca 16 AFca 11 AFca1 B14B03 MTLEC2A MTIC185 MTIC124 MTIC135 MTIC14 MTIC169 MTIC237 MTIC247 MTIC248 MTIC250 Secvenţă- forward TTTTTGTCCCACCTCATTAG TAAAAAACGGAAAGAGTTGGTTAG GGTCGAACCAAGCATGT CTTGAGGGAACTATTGTTGAGT CGTATCAATATCGGGCAG GCTTGTTCTTCTTCAAGCTC CGGAAAGATTCTTGAATAGATG AGATTTCAATTCTCAACAACC TTGTCACGAGTGTTGGAATTTT GCTGACTGGACGGATCTGAG CAAACAAACAACACAAACATGG TCAAAACCCTAAAACCCTTTCTC CCCATATGCAACAGACCTTA TTCGCAGAACCTAAATTCAT TATCTCCCTTCTCCTTCTCC GCCTGAACTATTGTGAATGG Secvenţă - reverse TTGGTTAGATTCAAAGGGTTAC GCCATCTTTTCTTTTGCTTC TAAAAAACATTACATGACCTCAAA AACGTTTCCCAAAACATACTT TGTTATCAGAGAGAGAAAGCG ACCTGACTTGTGTTTTATGC TGGTTCGCTGTTCTCATG TCTATGATGGATACGATACGG TTGGGTTGTCAATAATGCTCA CCAAAGCATAAGCATTCATTCA CCCATTGATTGGTCAAGGTT GCGTGCTAGGTTTGAGAGGA TGGTGAAGATTCTGTTGTTG TGAGAGCATTGATTTTTGTG GGATTGTGATGAAGAAATGG CGTTGATGATGTTCTTGATG Estimated heterozygoty, effective number of alleles and diversity index in alfalfa genotypes studied using SSR primers No crt 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Genotype SATELIT F 1109-99 F105-90 GRANAT COSMINA SIGMA F1615-04 F1206-00 F1306-01 F1822-06 SUPER F270-91 F1413-02 F1310-01 F1111-99 He Ne x sx x sx 0,467+0,077 0,407+0,047 0,440+0,050 0,407+0,047 0,513+0,066 0,180+0,007 0,167+0,093 0,253+0,129 0,267+0,141 0,513+0,058 0,353+0,033 0,413+0,118 0,407+0,047 0,373+0,097 0,267+0,141 2,95+0,26 2,71+0,13 2,81+0,15 2,71+0,13 3,14+0,32 2,22+0,01 2,23+0,14 2,41+0,22 2,46+0,27 3,12+0,27 2,56+0,08 2,83+0,32 2,71+0,13 2,66+0,22 2,46+0,27 No crt 0,729 1 0,619 2 0,638 3 0,635 4 0,676 5 0,461 6 0,444 7 0,511 8 0,530 9 0,685 10 0,557 11 0,632 12 0,588 13 0,598 14 0,530 15 J Genotype PASTORAL MAGNAT ALINA SELENA STOLO-13 MF 42-96 VIKING CRISTAL F219-91 CORAL DORINA SATURN OPAL VENUS F907-97 He Ne x sx x sx 0,373+0,053 0,260+0,080 0,247+0,127 0,333+0,093 0,253+0,129 0,413+0,052 0,273+0,146 0,307+0,070 0,300+0,151 0,380+0,100 0,433+0,057 0,380+0,106 0,260+0,080 0,300+0,151 0,527+0,047 2,62+0,15 2,39+0,17 2,40+0,21 2,56+0,23 2,41+0,22 2,73+0,15 2,49+0,29 2,47+0,15 2,55+0,28 2,69+0,23 2,80+0,17 2,71+0,28 2,39+0,17 2,55+0,28 3,16+0,24 J 0,566 0,503 0,479 0,567 0,558 0,609 0,520 0,607 0,546 0,602 0,618 0,595 0,560 0,523 0,681 •CONCLUSIONS -Genomic DNA amplification from 30 genotypes with 5 ISSR primers, generated 117 amplicons, of which 95 were polymorphic markers, the mean – 18.2; -22 ISSR markers, present in all the 30 genotypes studied, may be considered specific for alfalfa Variance analysis for the alfalfa studied genotypes, from the viewpoint of the bands generated by the ISSR primers, recorded high and significant values in the cultivars: Cosmina, Sigma, Super and the: F 1615-04, F 1109-99, F 105-90 lines etc The results obtained with the help of the five ISSR primers, prove the existence of a high genetic variability among the genotypes analyzed, which could be efficiently explored in alfalfa breeding programs. -20 fragments amplified in all the 30 genotypes studied may be considered specific RAPD markers for alfalfa; The RAPD analysis with the help of the 13 primers shows the existence of a high genetic variability among the genotypes studied, which could be efficiently explored in alfalfa breeding programs; The results of the genetic diversity assessment at loci level showed the highest frequent heterozygosity in F 907-97 (52.70 %), Cosmina (51.30 %), F 1822-06 (51.30 %), Satelit (46.70 %) and Dorina (43.30 %) genotypes; The highest frequent allele homozygosity at loci level was observed in F 1615-04 (83.30 %), Sigma (82.00 %), Alina (75.30 %), Stolo 13 (74.70 %) and F 1206-00 (74.70 %) genotypes; Also, in the studied genotypes, we observed the existence of a direct correlation between the estimated heterozygosity and the effective number of alleles, so that the genotypes having several alleles/locus record a higher frequency of heterozygosity, too; THANK YOU !