Octet Training Part III: Quantitation on the Octet Scott Zhou, North China FAS MB:15810470035, Email:scott_zhou@ap.pall.com Mar.20th, 2013 Agenda BLI Quantitation Workflow BLI Quantitation Applications BLI Quantitation Workflow Sandwich ELISA Assay Procedure Typical read out could be fluorescence or luminescence Bottom of well (1) (2) (3) (4) (5) Plate is coated with a capture antibody Sample is added, and any antigen present binds to capture antibody Detecting antibody is added, and binds to antigen Enzyme-linked secondary antibody is added, and binds to detecting antibody Chromogen/substrate is added, and is converted by enzyme to detectable form Each step involves incubation time and wash steps in between. Manual ELISA can be an all day assay for just a few plates. Multiple Steps add to higher CV 5-25%. Biolayer Interferometry(BLI) 可实时检测到两个反射表面间距的改变 Relative Intensity 100% 0 Wavelength (nm) surfaces = ℓ ƒ(λ, ℓ) Intensity λ = nm shift Distance between the two reflecting Time Biosensor selection According to application & sample type etc. 新开发了四种传感器 1. Anti-GST Biosensor: 用于含GST标签的蛋白 2. NTA Biosensor:用于含His标签的蛋白 3. Anti-human Fab-CH1:用于人Fab, F(ab’)2及Ab1~4 4. Anti-Flag biosensor:用于含Flag标签的蛋白 Octet Workflow for Quantitation Anti-human IgG (Fc specific), anti-murine IgG (Fab’ specific), or Protein A sensors Standard samples of known concentration used to generate a standard curve Unknown samples Octet Automated Workflow for Quantitation Calibrants Binding (nm) Anti-Human IgG, Anti-Murine or Protein A Biosensors Test Samples • • • Calibrants used to plot a binding rate vs conc. calibration curve The binding rates of test samples are then measured and plotted on the calibration curve to determine their concentration One sensor per one sample well; one step assay with pre-made sensors. Binding Rate Time Concentration Octet Workflow for Quantitation with Regeneration Octet Biosensors Test Samples Binding (nm) Standards Time (sec) • • • The binding rates of test samples are measured and interpolated from the standard curve to determine concentration 96 samples analyzed in 15 - 30 minutes Reuse of standard curve is optional Binding Rate Regen Buffer/Neut. Concentration 120 Lab Work Example – Quantitation Experiment • Set up the plate shown below: 1 2 3 4 A 1 700 10 500 B 3 500 10 C 10 300 D 30 E 10 11 … … Glycine pH2.0 SD 500 … … Glycine pH2.0 SD 10 500 … … Glycine pH2.0 SD 100 10 500 … … Glycine pH2.0 SD 100 30 10 500 … … Glycine pH2.0 SD F 300 10 10 500 … … Glycine pH2.0 SD G 500 3 10 500 … … Glycine pH2.0 SD H 700 1 10 500 … … Glycine pH2.0 SD Calibrators • • • • Samples 5 6 7 8 9 Regeneration Analyze using Protein A Biosensors and running the standard Protein A Protocol Refer to Quick Start Q Assay pdf for further details of running Quantitation Assays Generate a Quantitation Report Calculate CVs of each of the 8 replicates of calibrators 12 Neutralization Quantitation – Real-time binding curves Rate of binding correlates to concentration • Octet Binding Curve = rate of increase in optical thickness as the sample binds to the sensor. • Different protein concentrations result in different binding curves 700 ug/mL 500 ug/mL 300 ug/mL 100 ug/mL 30 ug/mL 10 ug/mL 3 ug/mL 1 ug/mL Rate of binding is proportional to concentration BLI Quantitation Applications Fc-fused protein Quantitation Overview • • • • • Samples: 14 hFc-fused proteins in supernatant 1 Standards: Fc-fused proteins with original conc. of 92.09mg/ml Biosensors : Protein A biosensor Octet platform: RED96 Other reagents & consumables : fresh medium, supernatant 2, PBS, 10mM pH1.5 glycine, Greiner 96-well micro-plate, pipettes , tips and etc. • Goal: CV% & Re%, throughput and etc. as to ELISA Workflow for the Fc-fused protein quantitation • • • • • • Test for dilution factors Dilute standards and unknowns with diluted supernatant Enter sample information into software Bind Fc-fused protein to protein A biosensor Generate standard curve & Regenerate biosensors Bind known concentrations of Fc-fused proteins to regenerated sensor • Bind unknown samples & Regenerate biosensors • Interpolate samples from standard curve to determine active concentration Determine dilution factor Red curve was 100 fold diluted sup1. A-H: PBS, 0-, 10- and 100-fold diluted fresh medium with PBS and 0-,10-,100- &1000-fold diluted. PBS as control while fresh medium and blank sup1 was diluted with PBS, and finally 100-fold diluted sup 1 was chosen based on a balance of matrix effect and sensitivity as showed above. Standard curve 1 in 100-fold diluted sup 1 • • • • • Sensors regenerated 10 times. Dynamic range setup: 2000ug/ml-0.061ug/ml(4-fold dilution series) Spiked standard: 1000ug/ml-0.9766ug/ml (4-fold dilution series) Unknowns: Dilute unknowns with diluted supernatant 1 Octet settings: 400rpm, 300s reading, 3-cycle regeneration with pH1.5 glycine Standard curve 1 determined in 100-fold diluted sup 1 • Analysis model: unweighted 4PL • Effective Dynamic range setup: 2000ug/ml-7.8125ug/ml(4-fold dilution series) • Spiked standard: 1000ug/ml-15.625ug/ml (4-fold dilution series) • Octet settings: 400rpm, 15s reading Standard curve 1 in 100-fold diluted sup 1 Spiked Std. Std.curve Theo.con. Detected Calculated 2000 500 125 31.25 7.8125 1.9531 0.2441 0.061 2081.6 2081.6 2029.4 2029.4 2005.2 2005.2 1891.5 1891.5 504.1 504.1 493.6 493.6 501.2 501.2 501.6 501.6 122.6 122.6 125.2 125.2 124.6 124.6 127 127 31.3 31.3 31.2 31.2 Mean SD CV% Re% Spiked std. Theo.con. Detected Calculated Mean 0.97656ug/ml Fc-pro 2001.925 80.22341 4.007314 100.0963 1.48 1.48 1.58 1.58 0.97656ug/ml Fc-pro 1.43 1.43 0.9766ug/ml Fc-pro 1.56 1.56 3.9063ug/ml Fc-pro 5.68 5.68 5.73 5.73 3.9063ug/ml Fc-pro 5.64 5.64 3.9063ug/ml Fc-pro 5.65 5.65 15.625ug/ml Fc-pro 17.9 17.9 17.8 17.8 15.625ug/ml Fc-pro 17.5 17.5 15.625ug/ml Fc-pro 17.8 17.8 62.5ug/ml Fc-pro 61.4 61.4 58.5 58.5 61 61 0.97656ug/ml Fc-pro 0.9766 SD CV% Re% 1.5125 0.06994 4.624162 154.8741 500.125 4.535324 0.906838 100.025 3.9063ug/ml Fc-pro 3.9063 124.85 31.2 1.813836 1.452812 0.141421 0.453274 99.88 99.84 15.625ug/ml Fc-pro 31 31 31.3 31.3 9.26 9.26 9.47 9.47 9.3 9.3 9.47 9.47 62.5ug/ml Fc-pro 2.76 2.76 62.5ug/ml Fc-pro 2.77 2.77 2.63 2.63 5.675 0.040415 0.71215 145.2781 15.625 9.375 2.735 0.110905 1.182991 120 0.070475 2.576767 140.0338 62.5 62.5ug/ml Fc-pro 61.5 61.5 250ug/ml Fc-pro 294.3 294.3 297.5 297.5 293.7 293.7 250ug/ml Fc-pro 294 294 1000ug/ml Fc-pro 1124.6 1124.6 1118 1118 2.78 2.78 250ug/ml Fc-pro 0.0744 0.0744 250ug/ml Fc-pro 0.1477 0.1477 0.0948 0.0948 0.124 0.124 0.1567 0.1567 1000ug/ml Fc-pro 0.1974 0.1974 1000ug/ml Fc-pro 1137.8 1137.8 Undefined Undefined Undefined Undefined 1000ug/ml Fc-pro 1168.1 1168.1 0.110225 0.032226 29.23629 45.15567 250 1000 0.17705 0.028779 16.25487 290.2459 17.75 0.173205 0.975803 113.6 60.6 1.416569 2.337572 96.96 294.87 1.76706 0.599257 117.95 5 1137.1 22.23022 1.954949 113.7125 25 Unknowns interpolated from standard curve 1 with 15s reading compared to ELISA Sample 1-100 1 2-100 2 3-100 3 4-100 4 5-100 5 6-100 6 7-100 7 8-100 8 9-100 9 10-100 10 ELISA 872.8 1220 unknown 704 1060.8 unknown 704 unknown 1280.8 872.8 11-100 12-100 15-100 16-100 1108 unknown unknown BLI Detected BLI Calculated Re% as compared to ELISA 9.82 982 726.4 726.4 11.4 1140 700.1 700.1 112.5114574 83.2263978 93.44262295 57.3852459 10 1000 1168.1 1168.1 11.3 1130 791.1 791.1 12.3 1230 807.6 807.6 13.7 1370 823.3 823.3 11 1100 819.5 819.5 11.6 1160 851.3 851.3 14.4 1440 779.8 779.8 10.7 1070 720.4 720.4 11.2 1120 11.6 1160 3.28 328 3.36 336 160.5113636 112.3721591 115.9502262 76.13122172 156.25 116.40625 112.4297314 60.88382261 122.5939505 82.53895509 104.6931408 1-100~16-100 means 100-fold diluted samples while original samples 1-16 were tested meanwhile. Standard curve 2 in 100-fold diluted sup 1 • • • • • Sensors regenerated 10 times. Dynamic range setup: 62.5ug/ml-0.0153ug/ml(2-fold dilution series) Spiked standard: 50ug/ml-0.1593ug/ml (4-fold dilution series) Unknowns: Dilute unknowns with diluted supernatant 1 Octet settings: 400rpm, 300s reading, 3-cycle regeneration with pH1.5 glycine Standard curve 2 determined in 100-fold diluted sup 1 • Analysis model: Linear point-to-point • Effective Dynamic range setup: 62.5ug/ml-0.2441ug/ml(2-fold dilution series) • Spiked standard: 50ug/ml-0.7813ug/ml (4-fold dilution series) • Octet settings: 400rpm, 120s reading Theo.con. Detected Calc.con. 63.8 63.8 62.2 62.2 62.5 61.8 61.8 62.2 62.2 30.1 30.1 31.4 31.4 31.25 32.2 32.2 31.2 31.2 15.9 15.9 15.8 15.8 15.625 15.6 15.6 15.2 15.2 7.23 7.23 7.91 7.91 7.8125 8.06 8.06 7.89 7.89 3.95 3.95 3.93 3.93 3.90625 3.84 3.84 3.91 3.91 1.85 1.85 2 2 1.953125 2.03 2.03 1.93 1.93 0.995 0.995 0.9683 0.9683 0.976563 0.9291 0.9291 1.02 1.02 0.4408 0.4408 0.5036 0.5036 0.488281 0.5007 0.5007 0.5079 0.5079 0.2456 0.2456 0.2521 0.2521 0.244141 0.2211 0.2211 0.2588 0.2588 0.0804 0.0804 0.1441 0.1441 0.12207 0.1643 0.1643 0.1443 0.1443 0.0639 0.0639 0.0443 0.0443 0.061035 0.0389 0.0389 0.0672 0.0672 0.0298 0.0298 0.0264 0.0264 0.030518 0.0651 0.0651 0.0164 0.0164 0.0333 0.0333 0.0152 0.0152 0.015259 0.0148 0.0148 0.0242 0.0242 Mean SD CV% Re% 62.5 0.887 1.419108 100 31.225 0.866 2.771959 99.92 15.625 0.310 1.981245 100 Standard curve 2 in 100-fold diluted sup 1 Std.curve Spiked Std. 7.7725 0.370 4.754429 99.488 3.9075 0.048 1.225115 100.032 Spiked std. 1.9525 0.080 4.105306 99.968 Theo.con. 100.1574 99.9936 100.1062 109.1789 0.053575 0.014 26.25634 87.77728 0.034425 0.021 61.6591 112.8041 0.021875 0.009 40.07481 143.358 0.070711 0.119545 118.3 0.251661 1.776432 113.3333 0.10116 2.952138 109.6533 0.023167 2.630355 112.7381 0.039714 14.41337 141.0731 14.2 14.2 13.9 13.9 14.16667 14.4 14.4 3.48 3.48 3.31 3.31 3.426667 3.49 3.49 0.8571 0.8571 0.8818 0.8818 0.880767 0.78125ug/ml Fc-pro 0.9034 0.9034 0.195313ug/ml Fc-pro 0.2342 0.2342 0.3134 0.3134 0.275533 50 50ug/ml Fc-pro 12.5 12.5ug/ml Fc-pro 3.125 3.125ug/ml Fc-pro 0.195313ug/ml Fc-pro 0.133275 0.037 27.388 59.15 59.1 0.78125ug/ml Fc-pro 0.016 6.727338 Re% 59.2 0.78125ug/ml Fc-pro 0.2444 CV% 59.1 3.125ug/ml Fc-pro 0.032 6.507182 SD 59.2 3.125ug/ml Fc-pro 0.48825 Mean 50ug/ml Fc-pro 12.5ug/ml Fc-pro 0.039 3.976498 Calculated 50ug/ml Fc-pro 12.5ug/ml Fc-pro 0.9781 Detected 0.195313ug/ml Fc-pro 0.78125 0.195313 0.279 0.279 Unknowns interpolated from standard curve 2 with 15s reading compared to ELISA Sample 1-100 2-100 3-100 4-100 5-100 6-100 7-100 8-100 9-100 10-100 11-100 12-100 15-100 16-100 ELISA 872.8 1220 unknown 704 1060.8 unknown 704 unknown 1280.8 872.8 1108 unknown unknown BLI Detected 9.72 10.3 9.31 11.1 11.3 10.9 10.8 12.2 12.2 10.3 10.5 10.1 3.29 2.74 BLI Calculated Re% as compared to ELISA 972 1030 931 1110 1130 1090 1080 1220 1220 1030 1050 1010 329 274 1-100~16-100 means 100-fold diluted samples. 111.3657 84.42623 157.6705 106.5234 153.4091 95.25297 118.011 91.15523 Summary Method Analysis model 1 2 3 4 5 6 7 sample 8 9 10 11 12 15 16 Test Conditions Dynamic Range ELISA ? 872.8 1220 unknown 704 1060.8 unknown 704 unknown 1280.8 872.8 Std. curve 1 4PL 5PL 982 945 1140 1100 1000 967 1130 1090 1230 1180 1370 1330 1100 1060 1160 1120 1440 1390 1070 1030 1120 1080 1108 1160 1120 unknown 328 308 unknown 336 316 ? 400rpm,15s ? 2000ug/ml-7.8125ug/ml Std. curve 2 Liner 972 1030 931 1110 1130 1090 1080 1220 1220 1030 1050 1010 329 274 400rpm,120s 62.5ug/ml-0.2441ug/ml • A std curve for high concentration sample detection was determined as std curve 1 as above. • A std curve for low concentration sample detection was determined as std curve 2 as above. Conclusion • A dilution factor of 100 for sup 1(samples in sup1) was determined using PBS as control due to severe matrix effect of blank sup 1 as well as fresh medium. • A std curve with dynamic range 2000ug/ml-7.8125ug/ml (4-fold dilution series, unweighted 4PL/5PL analysis) was developed for high concentration samples under 400 rpm with 15s reading, and samples were interpolated. • More sensitive method was developed under 400 rpm with 120s300s reading and the dynamic range was 62.5ug/ml-0.2441ug/ml(2fold dilution series, Linear point-to-point analysis). • Sensors could be regenerated well in 10mM pH1.5 glycine buffer. Crude sample detection: quantitation Case 1 Object: quantitate pro in supernatant Solution : Pro A sensor with regeneration steps.(1000rpm, ReadTime 120s) Matrix: supernatant from CHO cells without centrifuge Outcome: good data. Method development with Pro A sensor Std. curve in buffer with spike Std. Spike Original (ug/ml) Calculated Mean (ug/ml) (ug/ml) (4 replicates) 0.8382 0.8417 0.8278 0.8412 4.22 4.13 4.18 4.19 17 18.1 17.6 18 1 5 20 Std. Curve obtained in buffer Calculated (ug/ml,4 replicates) Original (ug/ml) 100.00 33.33 11.11 3.70 1.24 0.41 0.14 100.4 33.4 11.2 3.7 1.25 0.4201 0.1375 100.6 33.4 11.3 3.74 1.26 0.4158 0.1375 101 33.1 10.9 3.69 1.24 0.3973 0.1377 mean (ug/ml) 98.1 33.4 11 3.69 1.19 0.4148 0.136 100.03 33.33 11.10 3.71 1.24 0.41 0.14 SD 1.31 0.15 0.18 0.02 0.03 0.01 0.00 CV% 1.31 0.45 1.64 0.64 2.52 2.44 0.58 Re% 100.03 99.98 100.00 100.14 100.41 100.92 100.13 SD CV% Re% 0.84 0.01 0.77 83.72 4.18 0.04 0.90 83.60 17.68 0.50 2.82 88.38 Method development with Pro A sensor Std. curve in medium with spike Std. Spike in medium Original (ug/ml) Calculated Mean (ug/ml) (ug/ml) 4 replicates 5 20 Std. Curve obtained in medium Calculated (ug/ml,4 replicates) 100.00 33.33 11.11 3.70 1.24 0.41 0.14 100.00 32.90 11.10 3.69 1.21 0.40 0.13 101.90 33.60 11.20 3.70 1.24 0.41 0.14 100.60 33.70 11.10 3.69 1.23 0.42 0.14 mean (ug/ml) 97.50 33.20 11.10 3.73 1.26 0.42 0.14 100.00 33.35 11.13 3.70 1.24 0.41 0.14 SD 1.85 0.37 0.05 0.02 0.02 0.01 0.00 CV% Re% 0.88 0.86 0.87 0.01 1.15 86.81 0.86 0.87 4.43 4.46 4.47 0.07 1.54 89.40 4.42 4.57 18.60 18.60 18.58 0.29 1.55 92.88 18.20 18.90 1 Original (ug/ml) SD CV% 1.85 1.11 0.45 0.51 1.69 2.69 1.56 Re% 100.00 100.06 100.23 100.07 100.41 101.61 100.15 Method development with Pro A sensor regeneration Samples calculated with loaded Std. curve obtained in medium Regeneration Original (ug/ml) 33.30 11.10 10 times 3.33 1.11 33.30 11.10 20 times 3.33 1.11 33.30 11.10 30 times 3.33 1.11 Calculated (ug/ml) (duplicates) 32.20 31.90 10.50 10.80 3.26 3.26 1.09 1.10 31.80 31.20 10.30 10.80 3.26 3.32 1.13 1.12 31.80 30.70 10.30 10.70 3.23 3.27 1.09 1.11 Mean (ug/ml) 32.05 10.65 SD CV% Re% 0.21 0.66 96.25 0.21 1.99 95.95 Plate No. 1 3.26 0.00 0.00 97.90 1.10 0.01 0.65 98.65 31.50 0.42 1.35 94.59 10.55 0.35 3.35 95.05 4 3.29 0.04 1.29 98.80 1.13 0.01 0.63 101.35 31.25 0.78 2.49 93.84 10.50 0.28 2.69 94.59 2 3.25 0.03 0.87 97.60 1.10 0.01 1.29 99.10 Method development with Pro A sensor regeneration Samples calculated with loaded Std. curve obtained in medium Regeneration Original (ug/ml) Calculated (ug/ml) Mean (ug/ml) SD CV% Re% 30.75 1.06 3.45 92.34 10.35 0.35 3.42 93.24 Plate No. (duplicates) 33.30 11.10 40 times 3.33 1.11 33.30 11.10 50 times 3.33 1.11 33.30 11.10 60 times 3.33 1.11 31.50 30.00 10.10 10.60 3.18 3.25 1.12 1.11 30.90 29.70 9.85 10.30 3.16 3.19 1.07 1.08 30.30 28.90 9.69 10.20 3.11 3.18 1.11 1.09 3 3.22 0.05 1.54 96.55 1.12 0.01 0.63 100.45 30.30 0.85 2.80 90.99 10.08 0.32 3.16 90.77 3.18 0.02 0.67 95.35 1.08 0.01 0.66 96.85 29.60 0.99 3.34 88.89 9.95 0.36 3.63 89.59 3.15 0.05 1.57 94.44 1.10 0.01 1.29 99.10 2'(22) 3'(33) Crude sample detection: quantitation Case 2 Object: quantitate pro X in milk Solution : AHC with regeneration steps. Matrix: 100 fold dilution milk Outcome: good data. BLI vs ELISA ELISA, R2=0.98 RED96,R2=0.99977 Standard curve obtained in milk with Octet RED96 Original ug/ml 100 50 25 12.5 6.25 3.13 1.56 Caculated ug/ml 99.5 100.5 52.1 48.7 25.7 24.3 13.8 11.4 6.1 6.4 3.3 2.96 1.82 1.37 Mean ug/ml 100.00 50.40 25.00 12.60 6.25 3.13 1.60 SD 0.71 2.40 0.99 1.70 0.21 0.24 0.32 Sensor type: AHC with regeneration Matrix: 100 fold diluted milk 数据来自中国农业大学。 CV% 0.71 4.77 3.96 3.47 3.39 7.68 9.95 Re% 100.00 100.80 100.00 100.80 100.00 100.00 102.24 BLI vs ELISA Sample ELISA(mg/ml) SD 090216-beestings 090216-1 month 090216-2 months 090216-3 months 090216-4 months 2.54 3.83 1.15 0.5 0.4 0.1 0.1 0.02 0.004 0.02 CV% Fortebio(mg/ml) SD CV% 5.7 1.7 1.7 0.7 5.5 2.25 4.74 1.075 0.426 0.6415 0.2 1 0.4 0.1 0.1 2 7 3 2 2 Std. curve: ELISA R2=0.98; Fortebio R2=0.99977. CV<10%; Re%:84-118% Sensor type: AHC with regeneration Matrix: 100 fold diluted milk 数据来自中国农业大学。 Assay Protocols for Increasing Sensitivity on the Octet 1st Step : 2nd Step : 3rd Step 1-Step Amplification sensor ||-Capture : Analyte High Speed Mixing Longer Incubation 2-Step sensor ||-Capture : Analyte : Ab High Speed Mixing Longer Incubation 2nd reagent 3-Step sensor ||-Capture : Analyte : Ab-Enz : 1) Substrate High Speed Mixing 2) anti-Ab-Mass Longer Incubation 2nd reagent • Last steps are measured on-line to obtain signal • Longer incubation at the 1st step allows signal amplification • 1st and 2nd steps can be done off-line to shorten the steps PPT Substrate Special Conjugate Qualifying Concentration – Which Assay Method Fits Customer Need Higher sensitivity Example : Clone Screening Using Sandwich Assay Anti-hIgG (fc) biosensor YYYYYY Y Y Y Y Y Y hIgG; on Octet or offline longer incubation Anti-hIgG Ab 2 min incubation 1: hIgG 2: Anti-hIgG Ab 2nd reagent format does NOT require wash step simple and easy protocol 2-Step Clone Selection assay using Octet QK Run Condition (sensitivity down to 156 pg/mL of HIgG) - O/N - 500 rpm - 2nd Ab = Special Conj. ng/mL 10 5 2.5 1.25 0.625 0.313 0.156 0 ELISA Conversion Flow Chart Obtain Assay Requirements and Existing ELISA Format (customer input) Select Sensor Type (immobilization mode) Select Assay Format (sensitivity & throughput) Validating Assay Format Managing NSB & Matrix Effect Optimize Reagent Formulation Further optimization if not meeting the spec. (modifying configuration to increase specific signal and reduce NSB) Summary Workflow • Test for dilution factors • Dilute standards and unknowns with diluted supernatant • Enter sample information into software • Bind Standard to pre-wetted biosensor • Generate standard curve & Regenerate biosensors • Bind known concentration samples to regenerated sensor • Regenerate biosensors • Bind unknown samples • Interpolate samples from standard curve(different models & different timewindows) to determine active concentration • Calculate CV%, Re% of standard curve and spiked samples and determine proper standard curve Optimization • Shaking Speed( much higher more sensitive) • Detection time(longer more sensitive) • Regeneration pH(sometimes need scouting) • Data Models(try different models) Pall ForteBio解决方案 Label-free Real time Fluidics-free Fast,Accurate,Easy. www.fortebio.com