3D Symmetry _2 (Two weeks) 3D lattice: Reading crystal7.pdf Building the 3D lattices by adding another translation vector to existing 2D lattices Oblique (symmetry 1) + T3 T2 T1 T1 T3 T2 1P T1 T2 T3 T1 T2 T2 T3 T3 T1 General Triclinic Primitive triclinic Oblique (symmetry 2) + T3 T2 T3 T1 T3 projection Is this position OK? X 4 choices in order to maintain 2 fold rotation symmetry: 1 1 11 (00), (0 ), ( 0), ( ) 2 2 22 (00) T3 0T1 0T2 z T3 1 (0 ) 2 ' T3 ' T3 2T3 T2 T3 Double cell 2P side centered T T1 2 T2 T1 ' T1 T2 T3 2A T T T 1 2 3 ' ' T3 T2 T3 T1 90o T3 T2 T3 T1 90o ' T3 2T3 T1 ' 1 T3 ( 0) Double cell 2 T3 side centered 1 T3 T1 0T2 z T2 T1 2 2B ' T1 T2 T3 ' ' T3 T2 T3 T1 90o 11 ( ) 22 1 1 T3 T1 T2 z 2 2 ' T3 ' T3 2T3 T2 T1 T3 Double cell body centered T2 T1 ' 2I T1 T2 T3 ' ' T3 T2 T3 T1 90o T1 T2 general Some people use based centered, some use body centered. 2 A 2B 2I 2 P, 2 I monoclinic Rectangular (symmetry m) + T3 T3 T2 T1 90o T1 90o T2 T1 T2 T3 T1 T2 T3 T1 90o 1 T3 T1 yT2 z 2 2T3 T1 2 yT2 2z 2A already exist! Rectangular (symmetry g) + T3 : the same. cm + T3 ? Rectangular (symmetry 2mm) + T3 P2mm T3 1 1 11 (00), (0 ), ( 0), ( ) P2mg 2 2 22 p2gg 1 1 11 (00 z ), (0 z ), ( 0 z ), ( z) 2 2 22 (00) T1 T3 T2 222 P T1 T2 T3 T1 T2 T3 T2 T3 T1 90o Orthorhombic primitive ' T3 1 (0 ) 2 ' T3 2T3 T2 T3 T1 T2 Double cell side centered ' T1 T2 T3 222 A ' ' T1 T2 T3 T2 T3 T1 90o 1 ( 0) 2 ' T3 T1 Orthorhombic base-centered ' T3 2T3 T1 T3 T2 Double cell side centered 222 B ' T1 T2 T3 ' ' T1 T2 T3 T2 T3 T1 90o Orthorhombic base-centered 11 ( ) 22 ' T3 ' T3 2T3 T2 T1 T3 T2 T1 ' 222 I T1 T2 T3 T1 T2 T3 T2 T3 T1 90o Orthorhombic body-centered 222B, 222A 222C rectangular 222 A 222 I Centered Rectangular (symmetry 2mm) + T3 C2mm 1 1 11 (00 z ), (0 z ), ( 0 z ), ( z) 2 2 22 the same (00z) T1 11 ( z) 22 T3 T2 222C T1 T2 T3 T1 T2 T3 T2 T3 T1 90o T1 ' T3 T2 222C ' T1 T2 T3 ' ' T1 T2 T3 T2 T3 T1 90o 1 ( 0 z) 2 ' T3 T1 T3 Face centered T2 ' 222 F T1 T2 T3 ' ' T1 T2 T3 T2 T3 T1 90o 222 P, 222 I , 222C , 222 F orthorhombic Square (symmetry 4, 4mm) + T3 P4 P4mm p4gm (00z) T1 (00 z ), ( 11 z) 22 T3 T2 T1 T2 T3 T1 T2 T3 T2 T3 T1 90o Tetragonal primitive 4P 1 1 T3 T1 T2 z 2 2 11 ( z) 22 ' T3 T1 T3 Tetragonal Body centered T2 4I ' T1 T2 T3 ' ' T1 T2 T3 T2 T3 T1 90o 4 P, 4 I Tetragonal Hexagonal (symmetry 3, 3m) + T3 T2 (00 z ), ( T1 p3 p3m1 (00z) Hexagonal primitive 3 P 21 3R ( z ) Rhombohedral 33 21 z) 33 p31m not in this category Why? (00z) Hexagonal primitive 3 P T3 T2 T1 21 ( z ) Rhombohedral 33 T1 T2 T3 T1 T2 120o T3 T2 T3 T1 90o 3R T2 T1 triple cell 2/3 2/3 1/3 1/3 a = b = c; = = 90o Hexagonal (symmetry 3m, 6, 6mm) + T3 T2 T1 p6 p6mm T3 can only located at positions: (00z) (00z) Hexagonal primitive 3 P 3P , 3R p31m Hexagonal & 6 related can only fit 3P! 11 lattice types already cubic (isometric) Special case of orthorhombic (222) with a = b = c Check the 3 fold rotation symmetry in 111 direction Primitive (P) Body centered (I) Face centered (F) Base center (C) 23P, 23I , 23F [100]/[010]/[001] [111] Cubic Tetragonal (I)? a=bc Tetragonal (P) Another way to look as cubic: Consider an orthorhombic and requesting the diagonal direction to be 3 fold rotation symmetry 222P 23P Primitive 222I 23I Body centered 222F 23F Face centered 222C 23C 3 fold rotation symmetry does not exist in base centered cell Bingo! 14 Bravais lattices! Lattice type - compatibility with - point group reading crystal9.pdf. Crystal Class Bravais Lattices Point Groups Triclinic P (1P) 1, 1 Monoclinic P (2P), C(2I) 2, m, 2/m P(222P), C(222C) Orthorhombic 222, mm2, 2/m 2/m 2/m F(222F), I(222I) Rhombohedral P (3P), 3R 3, 3, 32, 3m, 32/m 6, 6, 6/m, 622, 6mm, 6m2, Hexagonal P (3P) 6/m 2/m 2/m 4, 4, 4/m, 422, 4mm, 42m, Tetragonal P (4P), I (4I) 4/m 2/m 2/m Isometric P (23P), F(23F), I 23, 2/m3, 432, 43m, 4/m32/m (Cubic) (23I) =P =TP http://www.theory. nipne.ro/~dragos/S olid/Bravais_table. jpg =I =TP =I =P =B http://users.aber.a c.uk/ruw/teach/33 4/bravais.php Next, we can put the point groups to the compatible lattices, just like the cases in 2D space group. 3D Lattices (14) + 3D point groups 3D Space group There are also new type of symmetry shows up in 3D space group, like glide appears in 2D space (plane) group! The naming (Herman-Mauguin space group symbol) is the same as previously mentioned in 2D plane group! The first letter identifies the type of lattice: •P: Primitive; I: Body centered; F: Face centered •C: C-centered; B: B-centered, A: A-centered The next three symbols denote symmetry elements in certain directions depending on the crystal system. (See next page) Monoclinic a b = 90o; c b = 90o. b axis is chosen to correspond to a 2-fold axis of rotational symmetry axis or to be perpendicular to a mirror symmetry plane. Convention for assigning the other axes is c < a. a c is obtuse (between 90º and 180º). Orthorhombic The standard convention is that c < a < b. Once you define the cell following the convention A, B, C centered Symmetry Direction Crystal System Primary Secondary Tertiary Triclinic None Monoclinic [010] Orthorhombic [100] [010] [001] Tetragonal [001] [100]/[010] [110] Hexagonal/ Rhombohedral [001] [100]/[010] [120]/[1 1 0] Cubic [100]/[010]/ [001] [111] [110] Monoclinic + 2 Consider 2P Monoclinic + 2 2D p2 P2 P2 /2 /2 1 T A B @ T 2 How about 2I Monoclinic + 2 c A T A ? 1 1 1 T a b c 2 2 2 b a There is a lattice point in the cell centered! T T|| (3) (2) T z (1) T z A (2) T|| (1) T T A B , z +1/2 (3) New type of operation T|| 1 @ T 2 1 1 a b 2 2 In general T A , B ,1 Screw axis 2 21 1 T|| 1 @ T 2 x (T / 2) cot( / 2) A 1 T A B @ T 2 T A (T T|| ) A B ,T|| B T A 1 @ T 2 B ,T|| (3) T T|| (2) (1) T A , (T T|| ) A , B , T|| 1 @ T 2 (2) A , T B , T|| (3) T T|| (1) T Crystal diffraction 2.ppt page 31 B 1 T A B @ T 2 1 @ T 2 A x T x (T / 2) cot( / 2) T A (T T|| ) A B ,T|| 1 @ T 2 B ,T|| A x T x (T / 2) cot( / 2) T A , (T T|| ) A , B , T|| 1 @ T 2 x (T / 2) cot( / 2) B , T|| A , x T A3 / 2, 1 T 3 Specifying T , m T n 1 2 0T , T , T , 3 3 3 4 T , T ,.... 3 3 T n mT 4 3 1 T 0T , T T 3 3 3 T For a 3-fold screw axis: 1 2 0T , T , T 3 3 3 31 32 2T 2 T 3 1 2 3 4-fold screw axis: 0T , T , T , T 4 4 4 41 41 42 43 1 T 4 T 3 T 4 43 T 42 T 2 T 4 n1 n2 1 2 T T n n ……... nm-2 nm-1 m2 m 1 T T n n No chirality 2 21 4 41 3 31 42 43 32 6 61 62 63 64 65 62 T Example to combine lattice with screw symmetry D A B C A: 2-fold + translation (to arise at B, C, or D) T A , B , T|| P all T : T|| 0c or c T A , B , Rotation symmetry of B, C, and D is the same as A. A: 2 T A B P + 2 = P2 T A ,c / 2 B ,c / 2 A: 21 21 P + 21 = P21 21 21 I + 2 = I2 or I + 21 = I21 A E 1 1 1 T a b c 2 2 2 T A , B , c / 2 A: 2 E: 21 Same, only shifted A: 21 E: 2 T A ,c / 2 B ,c / 2c / 2 B I2 = I21 Hexagonal lattice (P and R) with 3, 31, 32. Case P first! A {1 A2 / 3 A4 / 3} B ' T C B C '' T ' T A2 / 3, B2' / 3, '' T A2 / 3, C2' / 3, All translations in P have component on c of 0 or unity! T|| 0c or 1c ' T A4 / 3, 2 B4'' / 3, 2 '' T A4 / 3, 2 C4'' / 3, 2 B and C: same point; B and C: equivalent point; Having B2 / 3, , B4 / 3, 2 P3 P31 P32 Case R! A {1 A2 / 3 A4 / 3} E All translations of R has component on c of 1/3 or 2/3! ' T A2 / 3, D2' / 3, c / 3 '' T A2 / 3, E2' / 3, 2c / 3 A 3 31 32 0 c/3 2c/3 D ' T D 1/3 E 2/3 '' T ' T A4 / 3, 2 D4'' / 3, 2 c / 3 '' T A4 / 3, 2 E4'' / 3, 2 2c / 3 D2' / 3, c / 3 E2' / 3, 2c / 3 2/3 c/3 2/3 2c/3 2/3 2c/3 2/3 c 2/3 c 2/3 4c/3 Screw at D’ E’ 31 32 3 32 3 31 Designation of Space group R3 R31 = R3 R32 = R3 Hexagonal lattice (P, R) + 3, 31, 32 P3, P31, P32, R3. Square lattice P with 4, 41, 42, 43. {1 A / 2 A A3 / 2 } C A B B B ' T C '' T C A 4 41 42 43 0 c/4 c/2 3c/4 B /2 0 /2 c/4 /2 c/2 /2 3c/4 The translation of P have component on c of 0 or unity! ' T A / 2, B' / 2, ' T A , 2 B'' , 2 ' T A3 / 2,3 B3''' / 2,3 '' T A / 2, C' / 2, '' T A , 2 C'' , 2 '' T A3 / 2,3 C3''' / 2,3 B 0 c/2 c 3c/2 B 4 41 42 43 B 2 21 2 21 P4 P41 P42 P43 P4 P41 P42 P43 How to obtain Herman-Mauguin space group symbol by reading the diagram of symmetry elements? First, know the Graphical symbols used for symmetry elements in one, two and three dimensions! International Tables for Crystallography (2006). Vol. A, Chapter 1.4, pp. 7–11. http://www.kristall.unifrankfurt.de/media/exercises/Symbols-forsymmetryelements-ITC-Vol.A2.pdf Symmetry planes normal to the plane of projection Symmetry plane Graphical symbol Translation Symbol Reflection plane None m Glide plane 1/2 along line 1/2 normal to plane 1/2 along line & 1/2 normal to plane (2 glide vectors) 1/2 along line, 1/2 normal to plane (1 glide vector) 1/4 along line & 1/4 normal to plane a, b, or c Glide plane Double glide plane Diagonal glide plane Diamond glide plane a, b, or c e n d 1/2 along line a, b, c 1/2 normal to plane a, b, c n-glide d-glide e-glide Symmetry planes parallel to plane of projection Symmetry plane Graphical symbol Translation Symbol Reflection plane None m Glide plane 1/2 along arrow a, b, or c Double glide plane 1/2 along either arrow e Diagonal glide plane 1/2 along the arrow n Diamond glide plane 1/8 or 3/8 along the arrows d 3/8 1/8 The presence of a d-glide plane automatically implies a centered lattice! Symmetry Element Identity 2-fold ⊥ page 2-fold in page 2 sub 1 ⊥ page 2 sub 1 in page 3-fold 3 sub 1 3 sub 2 4-fold 4 sub 1 4 sub 2 4 sub 3 6-fold 6 sub 1 6 sub 2 6 sub 3 Graphical Symbol Translation Symbol None None None None 1/2 1/2 None 1/3 2/3 None 1/4 1/2 3/4 None 1/6 1/3 1/2 1 2 2 21 21 3 31 32 4 41 42 43 6 61 62 63 Symmetry Element 6 sub 4 6 sub 5 Inversion 3 bar 4 bar 6 bar 2-fold and inversion 2 sub 1 and inversion 4-fold and inversion 4 sub 2 and inversion 6-fold and inversion 6 sub 3 and inversion Graphical Symbol Translation Symbol 2/3 5/6 None None None None 64 65 1 3 4 6 = 3/m None 2/m None 21/m None 4/m None 42/m None 6/m None 63/m c-glide b n-glide 1 2 1 2 a b 21 c || a n 2 m c || c 21 2 || b b-glide a m From the point group mmm orthorhombic For orthorhombic: primary direction is (100), secondary direction is (010), and tertiary is (001). axis || a axis || b axis || c plane a plane b plane c lattice C 2 21 2 21 21 m b c n m n 2 2 21 C m c m for orthorhombic: 2 21 ( n nm ) meabcnd Cmcm Short symbol 17 D2h No. 17 orthorhombic that can be derived Principles for judging crystal system by space group •Cubic – The secondary symmetry symbol will always be either 3 or 3 (i.e. Ia3, Pm3m, Fd3m) •Tetragonal – The primary symmetry symbol will always be either 4, 4 , 41, 42 or 43 (i.e. P41212, I4/m, P4/mcc) •Hexagonal – The primary symmetry symbol will always be a 6, 6 , 61, 62, 63, 64 or 65 (i.e. P6mm, P63/mcm) •Trigonal – The primary symmetry symbol will always be a 3, 3 , 31 or 32 (i.e P31m, R3, R3c, P312) •Orthorhombic – All three symbols following the lattice descriptor will be either mirror planes, glide planes, 2-fold rotation or screw axes (i.e. Pnma, Cmc21, Pnc2) •Monoclinic – The lattice descriptor will be followed by either a single mirror plane, glide plane, 2-fold rotation or screw axis or an axis/plane symbol (i.e. Cc, P2, P21/n) •Triclinic – The lattice descriptor will be followed by either a 1 or a (-1). http://chemistry.osu.edu/~woodward/ch754/sym_itc.htm What can we do with the space group information contained in the International Tables? 1. Generating a Crystal Structure from its Crystallographic Description 2. Determining a Crystal Structure from Symmetry & Composition Example: Generating a Crystal Structure http://chemistry.osu.edu/~woodward/ch754/sym_itc. htm Description of crystal structure of Sr2AlTaO6 Space Group = Fm3m; a= 7.80 Å Atomic Positions Atom Sr Al Ta O x 0.25 0.0 0.5 0.25 y 0.25 0.0 0.5 0.0 z 0.25 0.0 0.5 0.0 From the space group tables http://www.cryst.ehu.es/cgibin/cryst/programs/nph-wp-list?gnum=225 32 f 3m 24 e 4mm 24 d mmm 8 4 4 c b a 43m m3m m3m xxx, -x-xx, -xx-x, x-x-x, xx-x, -x-x-x, x-xx, -xxx x00, -x00, 0x0, 0-x0,00x, 00-x 0 ¼ ¼, 0 ¾ ¼, ¼ 0 ¼, ¼ 0 ¾, ¼ ¼ 0, ¾ ¼ 0 ¼¼¼,¼¼¾ ½½½ 000 Sr 8c; Al 4a; Ta 4b; O 24e 40 atoms in the unit cell stoichiometry Sr8Al4Ta4O24 Sr2AlTaO6 F: face centered (000) (½ ½ 0) (½ 0 ½) (0 ½ ½) Sr (000) (½½0) (½0½) (0½½) 8c: ¼ ¼ ¼ (¼¼¼) (¾¾¼) (¾¼¾) (¼¾¾) ¼ ¼ ¾ (¼¼¾) (¾¾¾) (¾¼¼) (¼¾¼) Al ¾ + ½ = 5/4 =¼ 4a: 0 0 0 (000) (½ ½ 0) (½ 0 ½) (0 ½ ½) (000) (½½0) (½0½) (0½½) Ta 4b: ½ ½ ½ (½½½) (00½) (0½0) (½00) O (000) (½½0) (½0½) (0½½) x00 24e: ¼ 0 0 (¼00) (¾½0) (¾0½) (¼½½) -x00 ¾ 0 0 (¾00) (¼½0) (¼0½) (¾½½) 0x0 0 ¼ 0 (0¼0) (½¾0) (½¼½) (½¾½) 0-x0 0 ¾ 0 (0¾0) (½¼0) (½¾½) (0¼½) 00x 0 0 ¼ (00¼) (½½¼) (½0¾) (0½¾) 00-x 0 0 ¾ (00¾) (½½¾) (½0¼) (0½0¼) Bond distances: Al ion is octahedrally coordinated by six O Al-O distance d = 7.80 Å 0.25 − 0 2 + 0 − 0 2 + 0 − 0 2 = 1.95 Å Ta ion is octahedrally coordinated by six O Ta-O distance d = 7.80 Å 0.25 − 0.5 2 + 0.5 − 0.5 2 + 0.5 − 0.5 = 1.95 Å Sr ion is surrounded by 12 O Sr-O distance: d = 2.76 Å 2 Determining a Crystal Structure from Symmetry & Composition Example: Consider the following information: Stoichiometry = SrTiO3 Space Group = Pm3m a = 3.90 Å Density = 5.1 g/cm3 First step: calculate the number of formula units per unit cell : Formula Weight SrTiO3 = 87.62 + 47.87 + 3 (16.00) = 183.49 g/mol (M) Unit Cell Volume = (3.9010-8 cm)3 = 5.93 10-23 cm3 (V) (5.1 g/cm3)(5.93 10-23 cm3) : weight in a unit cell (183.49 g/mole) / (6.022 1023/mol) : weight of one molecule of SrTiO3 (5.1 g/cm3)(5.93 10-23 cm3)/ (183.49 g/mole/6.022 1023/mol) = 0.99 number of molecules per unit cell : 1 SrTiO3. From the space group tables (only part of it) 6 e 4mm 3 3 1 1 d c b a 4/mmm 4/mmm m3m m3m x00, -x00, 0x0, 0-x0,00x, 00-x ½ 0 0, 0 ½ 0, 0 0 ½ 0½½,½0½,½½0 ½½½ 000 http://www.cryst.ehu.es/cgi-bin/cryst/programs/nph-wplist?gnum=221 Sr: 1a or 1b; Ti: 1a or 1b Sr 1a Ti 1b or vice verse O: 3c or 3d Evaluation of 3c or 3d: Calculate the Ti-O bond distances: d (O @ 3c) = 2.76 Å (0 ½ ½) d (O @ 3d) = 1.95 Å (½ 0 0, Better) Atom Sr Ti O x 0.5 0 0.5 y 0.5 0 0 z 0.5 0 0