Community and gradient analysis: Matrix approaches in macroecology The world comes in fragments Biogeography Species occurrences across a fragmented landscape 1. 2. 3. 4. Islands Lakes River bed and irrigation systems Mainlands continental distributions habitat islands mountain tops and valleys fragmented landscapes scattered distributed host plants 5. Cities and anthropogenic habitats 6. Routes of species invasion 7. Experimental plots (natural, macro-, mesocosm experiments) Galapagos Islands The Darwin finches The Darwin finches (Sanderson, Am. Scient. 2000) Species Seymour Baltra Isabella Fernandina Santiago Rabida Pinzon Santa Cruz Sante Fe San Cristobal Espanola Floreana Genovesa Marchena Pinta Darwin Wolf Islands Geospiza magnirostris 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 Geospiza fortis 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 0 0 Geospiza fulignosa 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 0 Geospiza difficilis 0 0 1 1 1 0 0 1 0 1 0 1 1 0 1 1 1 Geospiza scandens 1 1 1 0 1 1 1 1 1 1 0 1 0 1 1 0 0 Geospiza conirostris 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 Camarhynchus psittacula 0 0 1 1 1 1 1 1 1 0 0 1 0 1 1 0 0 Camarhynchus pauper 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Camarhynchus parvulus 0 0 1 1 1 1 1 1 1 1 0 1 0 0 1 0 0 Platyspiza crassirostris 0 0 1 1 1 1 1 1 1 1 0 1 0 1 1 0 0 Cactospiza pallida 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 0 0 Cactospiza heliobates 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 Cerrthidea olivacea 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 A presence – absence matrix reflects the distribution of species across sites The distribution of ground beetles across Mazurian lake islands Species/Sites Pterostichus nigrita (Paykull) Platynus assimilis (Paykull) Amara brunea (Gyllenhal) Agonum lugens (Duftshmid) Loricera pilicornis (Fabricius) Pterostichus vernalis (Panzer) Amara plebeja (Gyllenhal) Badister unipustulatus Bonelli Lasoitrechus discus (Fabricius) Poecilus cupreus (Linnaeus) Amara aulica (Panzer) Anisodatylus binotatus (Fabricius) Bembidion articulatum (Panzer) Clivina collaris (Herbst) Panagaeus cruxmajor (Linnaeus) Poecilus versicolor (Sturm) Pterostichus gracilis Dejean) Stenolophus mixtus Pseudoophonus rufipes (De Geer) Harpalus latus (Linnaeus) Agonum duftshmidi Shmidt Harpalus solitaris Dejean Colums totals wros wron wil ter swi sos mil 0 1 1 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 4 7 5 3 9 lip kor hel guc 1 0 0 1 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 8 9 4 3 gil 1 1 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 ful dab 3pog 2pog 1pog Row totals 1 1 1 1 1 13 1 1 1 1 0 11 1 1 0 0 0 9 0 1 0 0 1 7 1 1 0 1 0 6 0 0 0 0 0 6 0 1 0 0 0 5 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 13 1 0 1 1 0 7 0 0 1 0 1 3 1 0 0 0 0 2 4 10 7 7 6 5 4 In presence – absence matrices zeros denote species absence, ones denote species presences. Absences might be caused either by real absences of species or by incomplete detection. 98 Biogeographic matrices are static descriptions of colonization patterns. Species/Sites Pterostichus nigrita (Paykull) Platynus assimilis (Paykull) Amara brunea (Gyllenhal) Agonum lugens (Duftshmid) Loricera pilicornis (Fabricius) Pterostichus vernalis (Panzer) Amara plebeja (Gyllenhal) Badister unipustulatus Bonelli Lasoitrechus discus (Fabricius) Poecilus cupreus (Linnaeus) Amara aulica (Panzer) Anisodatylus binotatus (Fabricius) Bembidion articulatum (Panzer) Clivina collaris (Herbst) Panagaeus cruxmajor (Linnaeus) Poecilus versicolor (Sturm) Pterostichus gracilis Dejean) Stenolophus mixtus Pseudoophonus rufipes (De Geer) Harpalus latus (Linnaeus) Agonum duftshmidi Shmidt Harpalus solitaris Dejean wros wron wil ter swi sos mil 0 1 1 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 lip kor hel guc 1 0 0 1 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 gil 1 1 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 ful dab 3pog 2pog 1pog 1 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 1 1 0 0 0 1 0 1 1 0 0 0 0 Colonization and extinction are permanent processes. In reality presence – absence pattern change whole the time. It makes therefore a difference if we use temporal point data to construct our matrices or a time series. Time series data contain much more entries but might be ecologically unrealistic. Species/Sites Pterostichus nigrita (Paykull) Platynus assimilis (Paykull) Amara brunea (Gyllenhal) Agonum lugens (Duftshmid) Loricera pilicornis (Fabricius) Pterostichus vernalis (Panzer) Amara plebeja (Gyllenhal) Badister unipustulatus Bonelli Lasoitrechus discus (Fabricius) Poecilus cupreus (Linnaeus) Amara aulica (Panzer) Anisodatylus binotatus (Fabricius) Bembidion articulatum (Panzer) Clivina collaris (Herbst) Panagaeus cruxmajor (Linnaeus) Poecilus versicolor (Sturm) Pterostichus gracilis Dejean) Stenolophus mixtus Pseudoophonus rufipes (De Geer) Harpalus latus (Linnaeus) Agonum duftshmidi Shmidt Harpalus solitaris Dejean Colums totals wros wron wil ter swi sos mil 0 1 1 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 4 7 5 3 9 8 lip kor hel guc gil 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 9 4 3 4 10 ful dab 3pog 2pog 1pog Row totals 1 1 1 1 1 13 1 1 1 1 0 11 1 1 0 0 0 9 0 1 0 0 1 7 1 1 0 1 0 6 0 0 0 0 0 6 0 1 0 0 0 5 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 13 1 0 1 1 0 7 0 0 1 0 1 3 1 0 0 0 0 2 7 7 6 5 4 98 Species/Sites Pterostichus nigrita (Paykull) Platynus assimilis (Paykull) Amara brunea (Gyllenhal) Agonum lugens (Duftshmid) Loricera pilicornis (Fabricius) Pterostichus vernalis (Panzer) Amara plebeja (Gyllenhal) Badister unipustulatus Bonelli Lasoitrechus discus (Fabricius) Poecilus cupreus (Linnaeus) Amara aulica (Panzer) Anisodatylus binotatus (Fabricius) Bembidion articulatum (Panzer) Clivina collaris (Herbst) Panagaeus cruxmajor (Linnaeus) Poecilus versicolor (Sturm) Pterostichus gracilis Dejean) Stenolophus mixtus Pseudoophonus rufipes (De Geer) Harpalus latus (Linnaeus) Agonum duftshmidi Shmidt Harpalus solitaris Dejean Colums totals wros wron wil ter swi sos mil 0 1 1 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 1 0 1 0 1 1 0 1 1 1 0 1 1 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 0 1 1 1 0 1 1 1 1 1 0 0 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 1 1 0 0 1 1 0 1 0 0 0 1 1 1 0 1 1 1 1 1 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1 1 1 15 16 17 11 14 11 10 lip kor hel guc gil 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 1 0 1 1 0 1 0 1 1 0 0 0 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 1 0 1 11 14 19 19 11 ful dab 3pog 2pog 1pog Row totals 1 1 1 1 1 13 1 1 1 1 0 11 1 1 0 0 0 9 0 1 1 0 1 8 1 1 1 1 0 10 0 0 1 1 0 11 1 1 1 1 1 14 1 0 1 1 1 14 1 0 1 1 1 11 1 0 0 0 1 11 1 0 1 0 1 10 1 1 0 1 0 11 1 1 1 1 1 13 1 1 1 1 1 12 1 1 1 1 1 12 1 1 1 1 1 13 1 1 1 1 1 13 1 1 1 1 1 10 1 1 1 1 1 16 1 0 1 1 0 10 1 0 1 0 1 12 1 0 0 0 0 7 20 14 18 16 15 251 Dispersion Extinction Time axis Time series matrices have too many entries and do not reflect real ecological patterns. They do not give information on real species interactions For a proper assessment of ecological patterns we need point data. The comparison of point and time series matrices gives information about dispersion rates. The distribution of ground beetles across Mazurian lake islands Species/Sites Pterostichus nigrita (Paykull) Platynus assimilis (Paykull) Amara brunea (Gyllenhal) Agonum lugens (Duftshmid) Loricera pilicornis (Fabricius) Pterostichus vernalis (Panzer) Amara plebeja (Gyllenhal) Badister unipustulatus Bonelli Lasoitrechus discus (Fabricius) Poecilus cupreus (Linnaeus) Amara aulica (Panzer) Anisodatylus binotatus (Fabricius) Bembidion articulatum (Panzer) Clivina collaris (Herbst) Panagaeus cruxmajor (Linnaeus) Poecilus versicolor (Sturm) Pterostichus gracilis Dejean) Stenolophus mixtus Pseudoophonus rufipes (De Geer) Harpalus latus (Linnaeus) Agonum duftshmidi Shmidt Harpalus solitaris Dejean wros wron wil ter 0 2 61 53 0 0 1 0 1 1 0 0 1 1 2 2 0 0 1 0 1 1 21 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 13 0 0 0 0 0 0 0 1 0 0 0 0 0 swi sos mil lip kor 0 18 39 2 0 0 9 0 117 76 19 40 0 1 0 0 0 0 0 0 0 0 3 0 0 0 1 7 0 0 1 2 0 4 0 4 1 0 3 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 5 3 2 90 0 3 0 2 1 0 0 0 0 0 0 0 0 0 0 hel guc gil 0 1 58 9 2 39 3 4 0 0 0 3 0 0 5 0 0 0 0 0 5 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 3 1 5 0 0 20 0 0 0 0 0 1 ful dab 3pog 2pog 1pog 1 5 2 2 30 48 4 25 7 0 10 5 0 0 0 0 2 0 0 1 5 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 6 3 3 0 7 11 0 0 0 2 0 1 1 0 0 0 0 Abundance matrices contain additional information. Abundance matrices might be based on point or averaged time series data. Mutual interaction matrices 1. 2. 3. 4. 5. 6. 7. Food web example P a ra site s L a rg e h e rb iv o re s H yp e rp a ra sito id s P a ra sito id s L a rg e ca rn iv o re s L a rg e o m n iv o re s L a rg e r ca rn iv o re s S m a ll ca rn iv o re s S m a ll h e rb iv o re s P la n t p ro d u ce rs L a rg e r d e co m p o se r M e d iu m o m n iv o re s B a cte rio phages B a cte ria l p ro d u ce rs Typical terrestrial food web S m a lle r d e co m p o se r Food webs Host – parasite networks Plant – herbivore networks Pollination networks Predator – prey networks Competition networks Species impact networks Translation of a food web into a matrix. Ones denote direct links. Prey/Predators A B C D E F G H 1 1 1 1 1 1 1 1 1 2 1 0 1 0 0 0 1 0 3 1 1 1 0 0 0 1 0 4 1 0 0 0 0 0 0 1 5 0 1 0 0 0 0 0 0 Generalist predator Specialist predator P re d a ce o u s b ird s a n d sn a ke s P a ra sito id sp id e r w a sp s S o n g b ird s P re d a ce o u s in se cts S co rp io n s L iza rd s S p id e rs R o d e n sts H e rb ivo ro u s in se cts S ca ve n g in g in se cts D e trito vo ro u s in se cts S e a b ird e cto p a ra site s L a n d p la n d s , se e d d e tritu s F ish a n d b ird ca rca sse s S e a b ird g u a n o A lg a l d e tritu s S e a b ird s M a rin ce p la n cto n ic fo o d w e b M a rin e m a cro a lg a e Lower/higher level A quantitative food web A B C D E F G H 1 0.8 0.6 0.9 0.7 0.3 0 0.7 0.2 2 3 4 5 0.2 0.3 0.1 0.5 0.6 0.6 0 0.7 0 0.9 0 0 0 0 0.4 0 0.7 0 0.1 0 0.6 0 0 0 0 0 0 0 0 0 0.8 0 Interaction strength is expressed by probabilities or by frquencies of interaction Interaction matrices Pollination networks Plants From Kratochwil et al. 2009 Bees Plant Asclepias AsclepiasAspidonepsis Miraglossum Miraglossum PachycarpusSisyranthusXysmalobium Xysmalobium Pollinators cucullata woodii diploglossa verticillare pilosum natalensistrichostomus gerrardii involucratum Hemipepsis 0 0 0 18 9 20 2 41 1 Pompilidae sp. 2 0 0 0 0 0 0 0 1 0 Tiphia 0 1 0 0 0 0 0 0 0 Arge 0 0 0 0 0 0 1 0 0 Apis 0 0 1 0 0 0 1 3 0 Halictidae sp. 1 0 0 2 0 0 0 0 0 0 Halictidae sp. 2 1 0 0 0 0 0 0 0 0 Other wasps 0 1 1 0 0 0 0 1 3 Other bees 0 0 0 0 0 0 0 1 1 Other solitary bees 0 1 2 0 0 9 0 0 0 Atrichelaphinis 0 15 0 1 0 0 35 15 6 Cyrtothyrea 0 8 0 1 0 0 42 6 0 Lycidae sp. 0 0 0 0 0 0 0 2 0 Cantharidae sp. 0 0 0 0 0 0 0 2 0 Elateridae sp. 0 0 0 0 0 0 0 0 4 Chrysomelidae sp. 1 0 0 0 0 0 1 0 0 1 Chrysomelidae sp. 2 0 0 0 0 0 0 1 1 1 Scarabaeinae sp. 1 0 0 0 0 0 0 0 3 0 Scarabaeinae sp. 2 0 0 0 0 0 0 0 3 1 Scarabaeinae sp. 3 0 0 0 0 0 0 0 1 0 Curculionidae sp. 1 0 0 0 0 0 0 10 4 1 Curculionidae sp. 2 0 2 0 0 0 0 0 0 0 Coleoptera sp. 3 0 0 0 0 0 0 0 2 0 Coleoptera sp. 8 0 0 0 0 0 0 1 0 0 Other Coleoptera 0 0 0 0 0 0 0 4 4 Aspilocoryphus 1 0 0 1 0 4 1 139 1 Lygaeidae sp. 2 0 0 0 1 0 1 0 8 2 Coreidae sp. 0 0 0 0 0 0 0 1 0 Spilostethus 0 0 0 0 0 1 0 0 0 Homoecerus 0 0 0 0 0 1 0 0 0 Pentatomoidea sp. 0 0 0 0 0 0 0 1 0 Other Heteroptera 0 0 0 0 0 0 0 1 0 Calliphoridae genus 1 0 0 0 0 0 0 0 1 0 Calliphoridae genus 2 0 0 0 0 0 0 2 6 0 Calliphoridae genus 3 0 0 0 0 0 0 0 1 0 Sarcophaga sp. 0 1 0 6 0 11 0 53 1 Musca 0 0 2 0 0 0 0 3 0 Muscidae genus 2 0 0 1 0 0 0 0 0 0 Empididae sp. 1 2 0 0 0 0 1 0 0 0 Empididae sp. 2 0 0 0 0 0 0 0 1 0 Chloropidae 0 0 1 0 0 0 0 1 0 Microphthalma 0 0 0 0 0 1 0 0 0 Microphthalma 0 0 0 0 0 0 0 1 0 Tachinidae subfamily Goniinae 0 0 0 0 0 0 0 1 0 Tachinidae genus 2 0 0 0 0 0 0 0 1 0 Actea 0 0 0 0 0 0 0 1 0 Sepsidae sp. 1 0 0 0 0 0 0 0 3 1 Sepsidae sp. 2 0 0 0 0 0 0 0 0 1 Sepsidae sp. 3 0 0 0 1 0 0 0 0 0 Dacus 0 0 0 0 0 1 0 0 0 Bibionidae 0 0 0 0 0 0 0 1 0 Diptera sp. 3 0 0 0 0 0 0 1 0 0 Diptera sp. 22 0 0 0 0 0 1 0 0 0 Other Diptera 0 1 0 1 0 1 0 15 0 Unidentified butterfly 0 0 0 0 0 0 1 0 0 Unidentified micromoth 2 0 0 0 0 0 0 0 0 From Ollerton et al. 2003 How to present a presence – absence matrix? Unsorted raw data S 1 2 3 4 5 6 7 8 9 10 1 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 1 1 0 3 0 0 1 1 0 1 0 0 0 0 4 1 0 1 0 1 0 0 1 1 0 5 0 0 0 0 0 1 0 1 1 0 6 0 1 1 0 0 0 0 1 0 0 7 0 1 0 0 0 1 0 0 1 1 8 1 0 0 0 0 0 1 1 0 0 S 3 4 3 5 3 3 4 3 Sorted according to marginal totals S 3 3 4 2 1 3 1 5 4 2 S 8 3 9 1 2 6 4 10 5 7 4 1 1 1 1 0 0 0 0 1 0 2 1 1 1 0 0 0 1 0 0 0 7 0 0 1 0 1 1 0 1 0 0 1 0 0 0 1 1 0 0 1 0 0 3 0 1 0 0 0 1 1 0 0 0 5 1 0 1 0 0 1 0 0 0 0 6 1 1 0 0 1 0 0 0 0 0 8 1 0 0 1 0 0 0 0 0 1 S 5 4 4 3 3 3 3 3 S 5 4 4 3 3 3 2 2 1 1 Sorted to maximize species turnover S 7 1 10 2 5 8 9 3 6 4 8 1 1 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 7 0 0 1 1 0 0 1 0 1 0 4 0 1 0 0 1 1 1 1 0 0 6 0 0 0 1 0 1 0 1 0 0 5 0 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 1 1 1 0 1 3 0 0 0 0 0 0 0 1 1 1 S 3 3 4 5 3 3 4 3 S 1 3 2 3 1 5 4 4 3 2 Correspondence analysis Reciprocal averaging (seriation) Ecological gradients Species ful guc 3pog sos 2pog dabwros gil ter 1pogwil mil swi kor hel lip wron Sum Pterostichus nigrita (Paykull) 1 1 2 18 2 5 0 58 53 30 61 39 0 0 0 2 2 Platynus assimilis (Paykull) 48 2 25 9 7 4 0 39 0 0 1 0 0 76 9 117 0 Amara brunea (Gyllenhal) 10 4 0 40 0 5 1 0 0 0 0 0 19 0 3 1 1 Agonum lugens (Duftshmid) 0 0 0 0 0 2 1 3 2 1 2 0 0 0 0 0 1 Loricera pilicornis (Fabricius) 5 0 0 0 1 1 0 5 0 0 1 3 0 0 0 0 0 Pterostichus vernalis (Panzer) 0 0 0 1 0 0 1 0 2 0 21 7 0 0 0 0 1 Amara plebeja (Gyllenhal) 0 0 0 2 0 1 0 5 0 0 0 0 1 0 0 4 0 Badister unipustulatus Bonelli 0 0 0 1 0 0 0 3 0 0 0 0 4 0 0 3 0 Lasoitrechus discus (Fabricius) 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 Poecilus cupreus (Linnaeus) 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 Sum 4 3 2 7 3 6 3 6 4 2 5 4 3 2 2 5 4 Area Isolation Habitat heterogeneity 13 11 9 7 6 6 5 4 2 2 10 10 2.1 20 1 7 0.2 10 0 0 1 0.2 2.1 2 1 4.19 0.15 0.01 0.01 0.1 0.1 0 0 0.1 0 0 0.1 0 0.1 0.1 0 0 0.09 0.09 10 10 8.4 8 7 7 6.8 6 4 4.3 4 3.1 3.1 3 1 1.23 0.91 Spatial or ecological Distance Sorting of matrix columns according to ecological gradients allows for an assessment of the the importance of environmental variables. Basic patterns Species turnover Species turnover or beta diversity is a special case of species segregation where there is an ordering change in species composition across the sites. Raw matrix Species ful guc 3pog sos 2pog dabwros gil ter 1pogwil mil swi kor hel lip wron Pterostichus nigrita (Paykull) 1 1 2 18 2 5 0 58 53 30 61 39 0 0 0 2 2 Platynus assimilis (Paykull) 48 2 25 9 7 4 0 39 0 0 1 0 0 76 9 117 0 Amara brunea (Gyllenhal) 10 4 0 40 0 5 1 0 0 0 0 0 19 0 3 1 1 Agonum lugens (Duftshmid) 0 0 0 0 0 2 1 3 2 1 2 0 0 0 0 0 1 Loricera pilicornis (Fabricius) 5 0 0 0 1 1 0 5 0 0 1 3 0 0 0 0 0 Pterostichus vernalis (Panzer) 0 0 0 1 0 0 1 0 2 0 21 7 0 0 0 0 1 Amara plebeja (Gyllenhal) 0 0 0 2 0 1 0 5 0 0 0 0 1 0 0 4 0 Badister unipustulatus Bonelli 0 0 0 1 0 0 0 3 0 0 0 0 4 0 0 3 0 Lasoitrechus discus (Fabricius) 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 Poecilus cupreus (Linnaeus) 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 Ordinated presence – absence matrix . kor swi lip sos hel guc3poggil ful dab 2pogwil wronwros1pogmil Poecilus_cupreus_(Linnaeus) 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 Badister_unipustulatus_Bonelli 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 Amara_plebeja_(Gyllenhal) 0 1 1 1 0 0 0 1 0 1 0 0 0 0 0 Platynus_assimilis_(Paykull) 1 0 1 1 1 1 1 1 1 1 1 1 0 0 0 Amara_brunea_(Gyllenhal) 0 1 1 1 1 1 0 0 1 1 0 0 1 1 0 Pterostichus_nigrita_(Paykull) 0 0 1 1 0 1 1 1 1 1 1 1 1 0 1 Loricera_pilicornis__(Fabricius) 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 Pterostichus_vernalis_(Panzer) 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 Agonum_lugens_(Duftshmid) 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 Lasoitrechus_discus_(Fabricius) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unexpected occurrences ter 0 0 0 0 0 1 1 1 0 1 Ecological distance between sites 0 0 0 0 0 1 0 1 1 1 Spatial distance between species Nested subset patterns A 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 B 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 0 C 1 1 0 1 1 1 1 1 1 1 1 0 0 0 1 0 1 1 0 1 D 1 0 1 0 1 1 0 0 1 0 1 1 1 1 1 0 1 0 1 1 E 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 1 F 1 1 1 1 0 0 1 1 1 1 0 0 0 1 0 1 0 1 0 0 G 1 1 0 1 1 1 1 1 1 1 0 0 1 0 0 0 0 1 0 0 H 1 0 1 0 0 1 0 1 0 0 1 0 1 1 0 1 1 1 0 0 I J K L M N O P 1 1 1 1 1 1 0 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 1 1 0 1 1 0 0 1 0 1 1 0 0 0 1 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 S um 1 5 1 4 1 3 1 2 1 1 1 1 1 0 1 0 9 9 9 9 8 6 5 5 Random matrix ordered according to row/colum totals S um 14 11 9 9 9 9 8 8 8 8 7 7 7 7 7 6 6 6 5 5 A 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 B 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 C 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 D 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 E F G H 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 Sum 20 18 14 12 9 9 7 I J K L M N O P 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 5 4 4 3 3 2 2 Unexpected absence Unexpected presence A nested matrix ordered according to row/colum totals A pattern where the species composition of species poorer assemblages form true samples of the species composition of species richer assemblages is called a nested subset pattern. Nestedness is common among biogeographical and interaction matrices. Sum 16 16 14 11 10 8 7 6 5 4 4 4 3 3 3 2 2 3 1 1 Causes of nestedness Mechanism Assumption/Precondition Predictions Gradient of site properties Carrying capacities of sites Gradient of species properties Regional abundance Selective colonization Isolation Dispersal ability Selective occupancy of sites according to isolation Selective extinction Carrying capacities of sites Extinction susceptibility (faunal relaxation) Selective occupancy of sites according to area of sites Nested habitats Habitat heterogeneity Degrees of specialization Higher proportion of generalist species in smaller and/or resource poor patches Selective environmental tolerances Environmental harshness Environmental tolerances Selective occupancy of sites according to tolerance to environmental stress Habitat quality Environmental harshness - Site occupancy in accordance to the ideal free distribution model. Passive sampling Regional abundance predicts occupancy The mass effect Regional abundance Colonization of within the sites with different metacommunity carrying capacities (areas) Abundance Species A B C D E F G H I J K L M 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 0 1 0 1 0 3 1 1 1 1 1 1 1 0 1 1 1 0 0 4 1 1 1 1 1 1 1 1 1 0 0 0 0 5 1 1 1 1 1 1 0 1 1 1 0 0 0 6 1 1 0 1 1 1 1 1 0 0 0 0 0 7 8 9 10 11 12 13 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Capacity Abundance A B C D E F G H I J K L M across all sites 103940 50432 34092 18433 11786 5943 1005 597 386 164 107 65 43 Proportional colonization of sites according to metacommunity abundance and carrying capacities Passive sampling causes a nested subset pattern. The mass effect is fundamental to all neutral models in ecology. Ecologists are mainly interested in process beyond mass effects. They are interested in ecological interactions. Negative species associations Aggregated matrix Checkerboard matrix S 1 2 3 4 5 6 7 8 9 10 1 1 0 1 0 1 0 1 0 1 0 2 0 1 0 1 0 1 0 1 0 1 3 1 0 1 0 1 0 1 0 1 0 4 0 1 0 1 0 1 0 1 0 1 5 1 0 1 0 1 0 1 0 1 0 6 0 1 0 1 0 1 0 1 0 1 7 1 0 1 0 1 0 1 0 1 0 8 0 1 0 1 0 1 0 1 0 1 Checkerboards are 2x2 submatrices with perfect species exclusion. Classical competiton theory predicts high numbers of checkerboards under intense competition of species. Reciprocal averaging S 1 3 5 7 9 6 4 8 2 10 1 1 1 1 1 1 0 0 0 0 0 3 1 1 1 1 1 0 0 0 0 0 5 1 1 1 1 1 0 0 0 0 0 7 1 1 1 1 1 0 0 0 0 0 2 0 0 0 0 0 1 1 1 1 1 6 0 0 0 0 0 1 1 1 1 1 4 0 0 0 0 0 1 1 1 1 1 8 0 0 0 0 0 1 1 1 1 1 Any perfectly segregated matrix can be reordered by reciprocal averaging to appear highly aggregated. Aggregation and segregation are in fact two sites of the same coin. Which matrix is expected under severe competition? Positive species associations Compartmented matrices S 1 2 3 4 5 6 7 8 9 10 1 1 1 1 0 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 3 1 1 1 1 1 1 1 0 0 0 4 0 0 0 1 1 1 1 0 0 0 5 0 0 0 1 1 1 1 0 0 0 6 0 0 0 0 0 0 0 1 1 1 7 0 0 0 0 0 0 0 1 1 1 8 0 0 0 0 0 0 0 1 1 1 Boundary clumping. Species ranges are coherent.There are no gaps (embedded absences) in the sequence of occurrence. S 4 5 6 7 2 3 1 8 9 10 1 1 1 1 0 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 6 1 1 1 0 0 0 0 0 0 0 7 1 1 1 0 0 0 0 0 0 0 8 1 1 1 0 0 0 0 0 0 0 5 0 0 0 1 1 1 1 1 1 1 4 0 0 0 1 1 1 1 1 1 1 The existence of well defined compartments points always to the fact that the species assemblage under study is not homogeneous (a true community) but an artificial sample of species. In these cases we should deal with the compartments as separate communities. Matrix analysis is able to identify natural ecological entities. Tools are either cluster analysis of ordination. Patterns in biogeographic presence – absence matrices The competition view of nature Jared Diamond’s 1975 assembly rules 1. „If one considers all combinations that can be formed from a group of related species, only certain ones of these combinations exist in nature.” 5. „Some pairs of species never coexist, either by themselves or as part of a larger combination.” Jared Diamond A neutral view of nature The Tallahassee mafia and his followers (particularly Steven Hubbell and other neutralists ) argued that patterns of species co-occurrence (associations) are mainly random. Dan Simberloff The frequency of segregated matrices in ecological meta-communities Frequency (%) 35 30 25 20 15 10 5 0 0.3 0.2 n=10 n=20 0.18 0.25 0.12 n=50 0.1 0.16 -6 0.14 0.2 0.1 0.08 0.1 0.06 0.04 0 2 4 6 8 10 12 Standardized effect size 0.04 0.06 0.05 -2 Gotelli, McCabe 2002 f(x ) f(x ) 0.15 -4 0.08 0.12 f(x ) 34 of a total of 96 meatcommunities (35%) were significantly (two sided 95% confidence limits) segregated. 0.02 0.02 0 0 0 2 0 Standardized effect size 4 6 8 10 0 3 X 6 9 12 15 18 X 0 6 12 18 24 30 36 42 48 X 0.06 Zi xi x s 0.05 f(x ) 0.04 0.03 0.02 0.01 0 0 0.5 1 1.5 2 2.5 X 3 3.5 4 4.5 5 P( - 1.96 < X < + 1.96) = 95% The distribution of Z should have a mean of zero and a standard deviation of one. Thus under a normal approximation 95% of values should range inside -1.96 < Z < +1.96 Equiprobable random Proportional random, nested S 26 49 46 20 5 34 32 35 40 33 38 41 13 11 6 21 10 9 25 19 30 1 47 17 12 43 28 50 8 23 48 18 39 15 2 16 4 31 7 29 27 37 22 42 36 14 24 45 3 44 27 0 1 1 1 1 1 0 0 0 1 1 0 1 1 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 1 0 1 0 1 0 1 0 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 17 1 1 1 1 1 0 1 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 28 1 1 0 0 0 1 1 1 1 0 0 1 0 0 1 1 1 1 0 0 0 1 0 1 1 0 0 1 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 1 1 1 1 1 1 1 0 0 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 29 1 0 0 1 1 0 1 0 1 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 15 1 0 1 1 0 1 1 1 0 0 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 0 30 0 1 0 1 1 0 0 1 1 1 0 1 0 1 0 0 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 23 1 0 0 1 1 1 1 1 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 24 0 0 1 0 1 0 1 1 1 1 1 1 1 1 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 22 0 1 1 1 1 0 0 0 1 1 1 0 0 1 1 0 1 0 1 0 1 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 S 50 48 49 47 46 45 44 42 40 43 41 38 36 22 39 31 34 35 37 27 15 29 28 8 6 24 26 1 12 2 3 9 5 16 33 18 25 7 32 10 4 30 20 21 11 23 14 17 19 13 50 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 26 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 22 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 39 0 1 1 1 1 1 1 1 1 0 0 1 1 1 0 0 0 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What pattern do we expect under intense competition. 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 1 1 1 1 1 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 1 1 1 1 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 Which matrix type is expected under severe competition? Metric for species segregation 110 1800 matrices with different structure, fill and size. Two metrics to identify species segregation and species clumping (aggregation). 90 70 50 30 10 Competition should result in a low degree of aggregation and a higher degree of segregation. -10 -10 0 10 20 30 40 50 60 70 Metric of species aggregation 0.35 0.3 Metric 0.25 0.2 Aggregation Segregation 0.15 0.1 0.05 0 Compart EquiAggr EquiSegr EquiRandom Nested Matrix type PrPrRand PrEquRand PropSegr Turnover Equiprobable random S 26 49 46 20 5 34 32 35 40 33 38 41 13 11 6 21 10 9 25 19 30 1 47 17 12 43 28 50 8 23 48 18 39 15 2 16 4 31 7 29 27 37 22 42 36 14 24 45 3 44 27 0 1 1 1 1 1 0 0 0 1 1 0 1 1 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 1 0 1 0 1 0 1 0 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 17 1 1 1 1 1 0 1 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 28 1 1 0 0 0 1 1 1 1 0 0 1 0 0 1 1 1 1 0 0 0 1 0 1 1 0 0 1 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 1 1 1 1 1 1 1 0 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0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 1 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 0 1 0 1 0 1 1 0 0 1 1 0 1 1 0 1 1 0 0 1 1 1 1 0 0 0 1 1 1 1 0 0 1 1 1 1 39 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 1 0 0 1 1 0 0 40 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 1 1 0 0 0 1 0 1 0 0 1 1 1 1 0 0 1 27 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 1 0 1 1 0 1 0 1 1 1 0 0 0 1 1 0 1 1 0 1 0 1 0 18 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 1 1 1 1 The null expectation of matrix pattern under intense competition are • A random matrix or • A segregated matrix with pronounced differences in species abundances. Randomness might be the outcome of strong negative species interactions. 11 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 1 0 1 1 1 0 1 25 0 0 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 1 1 1 0 1 0 1 1 0 1 0 1 1 1 0 1 43 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 1 1 1 0 0 42 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 1 0 1 1 1 1 1 1 34 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 1 46 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 1 1 1 0 1 1 1 0 0 0 1 44 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 1 1 A meta analysis of 471 empirical presence – absence matrices. 60 50 40 30 20 10 0 -10 -10 0 10 20 Clumping metric Segregation metric Raw score 0.2 0.15 0.1 0.05 0 Segregation metric Aggregation metric 471 empirical matrices In 273 matrices the segregation metric was higher than the aggregation metric (58%). 30 34 matrices (7%) had negative clumping Z-scores and significantly positive segregation Z-scores. 94 matrices (20%) had negative clumping and positive segregation Z-scores. There is no prevalence of segregation (negative species interactions). These results do not corroborate the assembly rule model. 1 1000 Matrix size 346 matrices were nested. Only 3 empirical matrices were more nested than expected from passive sampling. 1000000 Only 73 empirical matrices had significant turnover. Nestedness metric Turnover metric 15 10 5 0 -5 -10 -15 Nested 5 0 -5 -10 -15 -20 -25 AntiNested 1 1000 Matrix size 1000000 Are interaction matrices different? From Bastola et al. 2009 FW: food webs, P: pollination webs, SD: seed dispersers. Open dots: not significant at the 5% error level Significantly nested networks From Bascompte et al. 2003 Observed degrees of nestedness in empirical mutualistic networks increase biodiversity and minimizes the degree of competition. Not significantly nested networks Nestedness and specialization Part of generalist species Species A B C D E F G H 1 1 1 1 1 1 1 1 0 2 1 0 1 1 1 1 0 0 3 1 1 1 1 1 0 0 0 4 1 1 1 1 0 0 0 0 Generalists 5 1 1 1 0 0 0 0 1 6 1 0 0 0 0 0 0 0 7 1 1 0 0 0 0 1 0 8 0 0 0 1 0 0 0 1 Generalists Specialists Specialists Part of specialist species Generalist species interact mainly with other generalists. Specialists interact either with generalists or with specialists.