Pathogen Virulence: Evolutionary ecology Outline: 29 Jan 15 • Functionally Dependent Life-History Traits: Virulence Important Example • Pathogen Traits Evolve via Strain Competition • Spatially Structured Transmission Dispersal Limitation Reduces Virulence 1 Virulence Property of Host-Parasite Interaction Parasite Generation Time Much Shorter Virulence: Parasite’s “Strategy” for Exploiting Host Virulence Evolution Affects Correlated Demographic Traits Functional Dependence = Pleiotropic Interaction 2 Increased Parasite Virulence Faster Consumption of Host Resources (1) Pathogen Reproductive Rate Increases (2a) Host’s Mortality Rate Increases or (2b) Rate of Clearance by Immune System Increases or (2c) Host Reproduction Decreases 3 Virulence Trade-Off Antagonistic Pleiotropy Pathogen Increases Propagule Production (Hence, Infection Transmission) Rate Duration of Infectious Period Decreases Evidence Reviewed 4 How Does Virulence Evolve? Pathogen-Stain Competition 2 Phenotypes Differ in Virulence (Resident, Mutant) Compete Between (and) Within Hosts 3 Modes of Strain Competition 5 Pathogen-Strain Competition 1. Cross-Reactive Immunity Competition Strictly Between-Host Scale Flu strains 2. Coinfection: Two Strains Exploit Same Host Individual Compete Both Within & Between-Host 3. Superinfection: More Virulent Strain Excludes Other Compete Both Within & Between-Host 6 Strain Competition Important Ecological Generality Cross-Reactive Immunity Example of Pre-emptive Competition Two Species (Strains), Same Niche (Allstadt et al. 2009) 7 Strain Competition Important Ecological Generality Coinfection: Example of Scramble Competition = Exploitative Competition Two Species Interact Indirectly Through Exploitation of Same Limiting Resource From quizlet.com 8 Strain Competition Important Ecological Generality Superinfection: Example of Interference Competition Two Species Interact Directly Aggressive Exploitation of Same Limiting Resource quizlet.com 9 Strain Competition: Adaptive Dynamics Host-Pathogen Dynamics Exert Selection Pressure on Competing Strains Mutant-Resident Competition Competitive Exclusion; Alter Parameters of Dynamics Evolutionarily Stable Strategy (ESS) Resists Invasion Adaptive Dynamics: Interplay of Ecology, Evolution 10 Strain Competition: Adaptive Dynamics “Solve” Strain Competition for a Preemptive Case General: ESS Virulence Graphically Virulence Evolution in a Second Preemptive Case Pathogen with Free-Living Stage e.g., Bacteriophage Superinfection, Vary Pathogen Dispersal Distance Impact on ESS Virulence 11 Cross-reactive Immunity One Strain per Infected Host Individual Strain Competition: Between-Host Scale Only Ecology: Preemptive Competition 12 Host Preemption Assume Homogeneous Mixing Host Population “Optimally Virulent” Strain, Max R0 Equivalently Minimizes Equilibrium Density Susceptible Hosts No Strain Coexistence (Pure ESS) Recall: Same Niche 13 Host Preemption Homogeneous Mixing, No Recovery Transmission-Infectious Period Trade-off () Transmission Efficiency, Direct Contact () Virulence, Extra Infected-Host Mortality Host Exploitation Strategy: d/d > 0 14 Natural Selection: Optimize Invasion Dynamics (Conceptual Core) Can Rare Mutant Invade Resident * at ecological (dynamic) equilibrium? This case: ESS does Max R0( ) : Background Host Mortality S: Susceptible Density 15 Natural Selection: Optimize SI Transmission Plus Host Birth, Death Resident Pathogen’s Dynamics Sets Resource Availability (Susceptible Density) for Mutant Strain of Pathogen Can Mutant find enough hosts to grow when rare? 16 Natural Selection: Optimize b Per-capitum Birth Transmission Rate (Mass Action) Non-Disease Mortality (All) ( + ) Infective Mortality : Virulence > 0 No Recovery from Infection 17 Dynamics of Epidemic 𝑑𝑆𝑡 𝑑𝑡 𝑑𝐼𝑡 = 𝑏 𝑆𝑡 + 𝐼𝑡 − 𝛽 𝑆𝑡 𝐼𝑡 − 𝜇 𝑆𝑡 = 𝛽 𝑆 𝐼 − 𝜇 + 𝛼 𝐼 𝑡 𝑡 𝑡 𝑑𝑡 Birth, Infection Transmission, Death 18 Analysis 𝑅0 : New Cases/Case When Invading Pathogen Rare Epidemiology: Invade All-Susceptible Population Evolutionary Ecology: Invade Host-Resident Strain at Endemic Equilibrium 19 Natural Selection: Optimize Transmission Rate: Infections/Time = 𝛽 𝑆𝑟𝑒𝑠 Transmission Duration: Time = 𝜇 + 𝛼 −1 Transmission Ends at Host Death 𝑅0 = 𝛽 𝑆𝑟𝑒𝑠 𝜇+ 𝛼 20 𝑅0 (𝑀𝑢𝑡𝑎𝑛𝑡, 𝑅𝑒𝑠𝑖𝑑𝑒𝑛𝑡) = Mutant Invades: 𝑆𝑟𝑒𝑠 > 𝛽𝑚 𝑆𝑟𝑒𝑠 𝜇+ 𝛼𝑚 𝜇 + 𝛼𝑚 𝛽𝑚 Recall: 𝜕𝛼 𝜕𝛽 > 0 among strains Note: 𝜕𝑅0 𝜕𝜇 < 0; Background Mortality & Virulence 21 Natural Selection: Optimize R0 S Endem icEquilibrium, R * 1 Rare Invader ; Advances if R0 , * 1 22 Natural Selection: Optimize R0 , S * * Sets Susceptible Density for Invader * 23 Natural Selection: Optimize von Baalen & Sabelis (1995, Am Nat) 24 Natural Selection: Optimize 1. ESS Virulence Maximizes R0 (for any Susceptible Density) 2. ESS Virulence Minimizes Susceptible Density Too Few Susceptible Hosts for Mutant Invasion 3. Greater Background Mortality Greater Virulence 25 Natural Selection: Optimize 4. ESS May Exhibit Intermediate Virulence Under Host Preemption; Natural Diversity 5. No Strain-Coexistence Possible Under Well-mixed, Preemptive Competition 26 Preemptive Host Competition Pathogen with Free-Living Stage Life History: Alternates Intra-Host Environment, External Environment Bacteria/Viruses, Including Bacteriophage “Curse of the pharaoh” Persistent free-living stage costly; Requires conversion of large amount of host resources; Pathogens with persistent free-living stage likely virulent 27 Host-Pathogen Dynamics S(t) Susceptible Density I(t) Infectious Density P(t) Free-living Stage (Virions, Spores) r Host Reproduction c Host Self-Regulation Transmission (Adsorption) Mortality; Includes Virulence 𝜃= 𝜇+ 𝜈 FLP Shed Rate FLP Burst Size FLP Decay Rate: Focus 28 Host-Pathogen Dynamics Equilibria Endemic Equilibrium (Extinction Unstable) Disease Free: (𝑟 𝑐 , 0, 0) 29 Local Stability: FLP Persistence = 1 𝜉 30 ESS Virulence: Pathogen Strain Competition Preemptive Competition: ESS Minimizes S* Positive Equilibrium Density of Susceptibles Traits: Functionally Dependent Altering Virulence: Antagonistic Pleiotropy 31 ESS Virulence: Pathogen Strain Competition Curse of the Pharaoh: Increased persistence of FLP (reduced ) demands more host resources, and virulence () increases. Equivalently: 𝜕𝜈 𝜕𝜉 < 0 Functional Constraint: 𝜈 𝜉 = 𝑏𝜈 𝜉 − 𝜎 ; 𝑏𝜈 , 𝜎 > 0 32 Functional Constraint: Virulence(Decay Rate) 33 Minimize S* Suppose Shed Rate = 0; Burst Size > 0 Lytic Virus, Bacteriophage Then 𝑆 ∗ = 𝜉 𝛼𝛽 = Decay/(Adsorption x Burst size) ESS Reduces and Increases Virulence Virulent and Persistent 34 Minimize S* Suppose Shed Rate > 0; Burst Size = 0 Animal Virus; Bacterial, Fungal Infection Then 𝑆 ∗ = 𝜉 𝜇 + 𝜈 𝜉 𝛼𝛾 For 𝜎 < 1: Strain Competition Reduces Decay Rate Virulent and Persistent For 𝜎 > 1: Competition Favors Intermediate Virulence 𝜈 ^ = 𝜇 𝑏𝜈 𝜎 − 1 −1 ; Curse Broken 35 Shed Rate > 0 and Burst Size > 0 36 Preemptive Host Competition Strain Minimizing Equilibrium Density of Susceptibles Should be ESS No Coexistence of Different Levels of Virulence (Not True for Coinfection and Superinfection) Curse of the Pharaoh Oversimplifies Strain Competition Caraco annd Wang (2008) J Theor Biol 250:569-579 37 Homogeneous Mixing Host Population Assumed in Dynamics Full Mixing: Hosts Highly Mobile over Timescale of Expected Lifespan Might Preclude Terrestrial Plants, Territorial Animals, etc.: “Viscous Populations” 38 Contact Structure, Van Baalen (2000) 39 Pathogen: Dispersal Limitation Contact Structures: Constrain Opportunities for Pathogen to Generate New Infections Ecology: Dispersal Limitation, Neighborhood Interactions Ecological Implications: Epidemic Invasion, Endemic Infection Levels Evolutionary Implications: (Including) Virulence 40 Pathogen: Dispersal Limitation Contact Structure: (L x L) Lattice Each Site: One of 4 Elementary States Local Neighborhood: All Ecological Interactions • • Opportunities for Host Reproduction (Open Sites) Sources of Infection 41 SPATIAL SUPERINFECTION 42 SPATIAL SUPERINFECTION Virulent Can Displace “Avirulent” Strain Interference Competition Discrete-Time Dynamics Transmission (Virulence); No Recovery Key: Superinfection (Virulence Difference) Within & Between-Host Competition Neighborhood Size: 8, 48 43 Develop Concepts 1. Mean-Field Analysis: Homogeneous Mixing 2. Pair Approximation: Local Correlation 3. Simulate Full Stochastic Spatial Model: Large-Scale Correlated Fluctuations, Strong Clustering Possible 44 Develop Theory: Deduce Predictions Pairwise Invasion Analyses: Adaptive Dynamics Resident Strain at Ecological Equilibrium Can Invading Strain (Mutant) Advance? Assumed Time Scales Convergence Stability; Evolutionary Stability 45 SPATIAL SUPERINFECTION Dynamics: Local Transition Probabilities Stochastic Spatial Model How do local interactions produce ensemble effects (population, community scales)? Model/Theory: Caraco et al. (2006) Theoretical Population Biology 69:367-384 46 Mean-Field Results Pairwise Invasion Homogeneous Mixing Evolution to Criticality Coexistence: Niche Difference 47 Mean-Field Results Pairwise Invasion Homogeneous Mixing Coexistence: Niche Difference CompetitionColonization Trade-Off 48 Spatial Model Results Increased Virulence Decreased Infection Increased Clustering Pair Correlation Model OK 49 Adaptive dynamics spatial process Pair Approximation Convergent Stable Evolutionarily Stable (Local ESS) Virulence Constrained By Contact Structure 50 Adaptive dynamics spatial process Simulation Max Virulence Lower Local ESS Reduced 51 Adaptive dynamics spatial process Weaker Competitive Asymmetry Via Superinfection Reduce ESS Reduce Coexistence 52 predict 1. Spatial Structure Constrains Maximal Virulence Capable of Dynamic Persistence, Through Extinction of Highly Virulent Strains 2. Spatial Structure Reduces Evolutionarily Stable Level of Virulence 3. Larger Neighborhood Relaxes Constraint, Dynamic Penalty of Clustering Attenuated 53 predict 4. Spatial Structure Promotes Coexistence: Extended Transmission/Low Virulence, Poor Interference Competitor/Good Colonizer and Attenuated Transmission/High Virulence, Advantage of Superinfection/Poor Colonizer 5. Coexistence Increases with Neighborhood Size 6. Comp. Asymmetry Increases Coexistence 54 Contemporary Questions Virulence in Pathogens with Both Contact and Environmental Transmission Avian Flu: Contacts; Virus Persists In Drinking Water Hyperparasites & Hypovirulence Vertical Transmission Sterilizing vs Killing Pathogens 55 Contemporary Questions Vector-Borne More Virulent Than Direct Contact (?) FLP: “Curse of the Pharaoh” Conditions for More Virulence Infective Dose: Remarkable Variation Ecological Consequences Strain Competition? 56 Contemporary Questions Within-Host Dynamics Parasite, Specific Immune Cell Densities Affects Between-Host Transmission Population Dynamics Host-Pathogen Coevolution Transmission Resistance, Tolerance Virulence, Optimal Immune Response 57