IB Biology: Nutrient Cycling Understanding: The supply of inorganic nutrients is maintained by nutrient cycling. Nutrients refer to the material required by an organism, and include elements such as carbon, nitrogen and phosphorus. The supply of inorganic nutrients on Earth is finite – new elements cannot simply be created and so are in limited supply Hence chemical elements are constantly recycled after they are used: Autotrophs obtain inorganic nutrients from the air, water and soil and convert them into organic compounds Heterotrophs ingest these organic compounds and use them for growth and respiration, releasing inorganic byproducts When organisms die, saprotrophs decompose the remains and free inorganic materials into the soil The return of inorganic nutrients to the soil ensures the continual supply of raw materials for the autotrophs Nutrient Cycling IB Biology: Chi-squared test Skill: Testing for association between two species using the chi-squared test with data obtained by quadrat sampling. The presence of two species within a given environment will be dependent upon potential interactions between them. If two species are typically found within the same habitat, they show a positive association. Species that show a positive association include those that exhibit predator-prey or symbiotic relationships If two species tend not to occur within the same habitat, they show a negative association Species will typically show a negative association if there is competition for the same resources o One species may utilize the resources more efficiently, precluding survival of the other species (competitive exclusion) o Both species may alter their use of the environment to avoid direct competition (resource partitioning) If two species do not interact, there will be no association between them and their distribution will be independent of one another Quadrat Sampling The presence of two species within a given environment can be determined using quadrat sampling A quadrat is a rectangular frame of known dimensions that can be used to establish population densities o Quadrats are placed inside a defined area in either a random arrangement or according to a design (e.g. belted transect) o The number of individuals of a given species is either counted or estimated via percentage coverage o The sampling process is repeated many times in order to gain a representative data set Quadrat sampling is not an effective method for counting motile organisms – it is used for counting plants and sessile animals In each quadrat, the presence or absence of each species is identified This allows for the number of quadrats where both species were present to be compared against the total number of quadrats Quadrat Sampling Method Chi-Squared Tests A chi-squared test can be applied to data generated from quadrat sampling to determine if there is a statistically significant association between the distribution of two species A chi-squared test can be completed by following five simple steps: Identify hypotheses (null versus alternative) Construct a table of frequencies (observed versus expected) Apply the chi-squared formula Determine the degree of freedom (df) Identify the p value (should be <0.05) Skill: Recognizing and interpreting statistical significance Example of Chi-Squared Test Application The presence or absence of two species of scallop was recorded in fifty quadrats (1m 2) on a rocky sea shore The following distribution pattern was observed: 6 quadrats = both species ; 15 quadrats = king scallop only ; 20 quadrats = queen scallop only ; 9 quadrats = neither species Step 1: Identify hypotheses A chi-squared test seeks to distinguish between two distinct possibilities and hence requires two contrasting hypotheses: Null hypothesis (H0): There is no significant difference between the distribution of two species (i.e. distribution is random) Alternative hypothesis (H1): There is a significant difference between the distribution of species (i.e. species are associated) Step 2: Construct a table of frequencies A table must be constructed that identifies expected distribution frequencies for each species (for comparison against observed) Expected frequencies are calculated according to the following formula: Expected frequency = (Row total × Column total) ÷ Grand total Step 3: Apply the chi-squared formula The formula used to calculate a statistical value for the chi-squared test is as follows: Where: ∑ = Sum ; O = Observed frequency ; E = Expected frequency These calculations can be broken down for each part of the distribution pattern to make the final summation easier Based on these results the statistical value calculated by the chi-squared test is as follows: 𝝌2 = (2.20 + 2.38 + 1.59 + 1.73) = 7.90 Step 4: Determine the degree of freedom (df) In order to determine if the chi-squared value is statistically significant a degree of freedom must first be identified The degree of freedom is a mathematical restriction that designates what range of values fall within each significance level The degree of freedom is calculated from the table of frequencies according to the following formula: df = (m – 1) (n – 1) Where: m = number of rows ; n = number of columns When the distribution patterns for two species are being compared, the degree of freedom should always be 1 Step 5: Identify the p value The final step is to apply the value generated to a chi-squared distribution table to determine if results are statistically significant A value is considered significant if there is less than a 5% probability (p < 0.05) the results are attributable to chance When df = 1, a value of greater than 3.841 is required for results to be considered statistically significant (p < 0.05) A value of 7.90 lies above a p value of 0.01, meaning there is less than a 1% probability results are caused by chance Hence, the difference between observed and expected frequencies are statistically significant As the results are statistically significant, the null hypothesis is rejected and the alternate hypothesis accepted: Alternate hypothesis (H1): There is a significant difference between observed and expected frequencies Because the two species do not tend to be present in the same area, we can infer there is a negative association between them Practice Question Two species of fir tree are found along the coast of Southern California. These two tree species are the Grand Fir (Abies grandis) and the Noble Fir (Abies procera). Their distribution patterns were establsihed via 150 quadrat samples, yielding the following results: 25 = both present ; 30 = Noble Fir only ; 45 = Grand Fir only ; 50 neither present Activity: Use the chi-squared test to determine if these two plant species show association. IB Biology: Chi-squared table A chi-squared table shows the distribution of critical values according to each degree of freedom. This allows for an assessment to be made as to whether the data is statistically significant (p<0.05) or not. For accurate data, the following conditions should be met: All items in the group should be independent and collected on a random basis No group should contain very few items (e.g. less than 10) The total number of items should be large (e.g. more than 50) Chi Squared Distribution Table