GENETICS GENETICS II (BIO 301) ABAYOMI E ADELEKE DEPT. OF ZOOLOGY, UNIVERSITY OF JOS, NIGERIA OUTLINE EVOLUTION OF DOMINANCE Definitions of commonly used terms i. Chromosomes/Chromatids ii. Genes iii. Traits iv. Alleles v. Locus vi. Homologous vii. Heterozygous viii. Homozygous ix. Hybrid x. Genotype xi. Phenotype xii. Gametes xiii. Heredity (Hypothesis) xiv. Self pollination OUTLINE Cycles in a cell i. Mitosis ii. Meoisis cont….. OUTLINE cont….. Mendelian genetics-qualitative i. 1st law- Segregation a. Dominance b. Monohybrid cross c. Alternatives of inheritance i. Incomplete dominance ii. Codominance iii. Multiple alleles ii. 2nd law- Independent assortment a. Dihybrid cross i. two-factor cross F1 ii. two-factor cross F2 OUTLINE cont….. Quantitative genetics i. Additive inheritance a. polygenic traits b. epistasis c. pleitropy ii. Environmental influence DEFINITION OF COMMON TERMS CHROMOSOME Thread-like, gene-carrying bodies in the nucleus of a cell. Chromosomes are composed primarily of DNA and protein. They are visible only under magnification during certain stages of cell division. Humans have 46 chromosomes in each somatic cell and 23 in each sex cell.(Rod-shaped structures within the cell nucleus that carry genes encoded by DNA). CHROMATID One of the two side-by-side replicas produced by chromosome duplication. GENE a unit of heredity which is transferred from a parent to offspring and is held to determine some characteristic of the offspring.units of inheritance usually occurring at specific locations, or loci, on a chromosome. A gene may be made up of hundreds of thousands of DNA bases. Genes are responsible for the hereditary traits in plants and animals. ALLELIC GENE Some genes have a variety of different forms, which are located at the same position, or genetic locus, on a chromosome. NON-ALLELIC GENE is alleles at different position of chromosome loci but can affect one gene over the other in different way of intereaction. ALLELE An alternative form of a gene that occurs at the same locus on homologous chromosomes, e.g., A, B, and O genes are alleles. One of the different forms of a gene or DNA sequence that can exist at a single locus. An alternate forms or varieties of a gene. The alleles for a trait occupy the same locus or position on homologous chromosomes and thus govern the same trait. However, because they are different, their action may result in different expressions of that trait. GAMETE A reproductive sex cell (ovum or sperm) with the haploid number (23) of chromosomes that results from meiosis. HOMOLOGOUS CHROMOSOMES Chromosomes that are paired during the production of of sex cells in meiosis. Such chromosomes are alike with regard to size and also position of the centromere. They also have the same genes, but not necessarily the same alleles, at the same locus or location. HOMOZYGOUS having the same allele at the same locus on both members of a pair of homologous chromosomes Homozygous also refers to a genotype consisting of two identical alleles of a gene for a particular trait. An individual may be homozygous dominant (AA) or homozygous recessive (aa). Individuals who are homozygous for a trait are referred to as homozygotes. The situation in which allelic genes are identical, e.g., the KK genotype or the Fya Fya genotype. HETEROZYGOUS A genotype consisting of two different alleles of a gene for a particular trait (Aa). Individuals who are heterozygous for a trait are referred to as heterozygotes or the situation in which allelic genes are different that is having two different alleles at a given locus on a pair of homologous chromosomes. LOCUS The location of allelic genes on the chromosome, a specific location on a chromosome. e.g., A, B, and O genes occur at the ABO locus. (Plural = loci) DOMINANT ALLELE An allele that masks the presence of a recessive allele in the phenotype. Dominant alleles for a trait are usually expressed if an individual is homozygous dominant or heterozygous. RCESSIVE ALLELE An allele that is masked in the phenotype by the presence of a dominant allele. Recessive alleles are expressed in the phenotype when the genotype is homozygous recessive (aa). PHENOTYPE The observable or detectable characteristics of an individual organism—the detectable expression of a genotype. Observable characterisics of an organism. GENOTYPE The genetic makeup of an individual. Genotype can refer to an organism's entire genetic makeup or the alleles at a particular locus. The actual alleles present in an individual. Phenotype vs Genotype 2 organisms can have the same phenotype but have different genotypes purple PP homozygous dominant purple Pp heterozygous 1. phenotype is the actual appearance or characteristic, and is determined by genotype; knowing the phenotype will not always directly reveal the genotype (recessive traits can be masked) 2. genotype is the listing of the actual alleles present; if you know the genotype, you should be able to predict the phenotype genotypes are either homozygous or heterozygous TRAIT Any detectable phenotypic variation of a particular inherited character. F1 GENERATION The first offspring (or filial) generation. The next and subsequent generations are referred to as F2, F3, etc. Traits: I’ll speak for both of us! Dominant allele leads to production of purple pigment mutant allele leads to no pigment homologous chromosomes CODOMINANCE The situation in which two different alleles for a trait are expressed unblended in the phenotype of heterozygous individuals. Neither allele is dominant or recessive, so that both appear in the phenotype or influence it. Type AB blood is an example. Such traits are said to be codominant. MULTIPLE ALLELE SERIES A situation in which a gene has more than two alleles. The ABO blood type system is an example. Multiple-allele series only partly follow simple Mendelian genetics. HEREDITY (HYPOTHESIS) THE BLENDED INHERITANCE HYPOTHESIS Suggests that physical traits (or phenotypes) of offspring are an intermediate of the parents. For example if a tall man and a short woman have a child, this hypothesis predicts their child would have a height intermediate relative to her parents. PARTICULATE INHERITANCE Is a pattern of inheritance discovered by Mendelian genetics theorists, such as William Bateson, Ronald Fisher or Gregor Mendel himself. This states that phenotypic traits can be passed from generation to generation through "discrete particles" known as genes, which can keep their ability to be expressed while not always appearing in a descending generation Gregor Mendel: Provided evidence for the particulate hypothesis. Mendel formulated some of the basic laws of genetics. MENDELIAN GENETICS KEY IDEA Mendel’s research showed that traits are inherited as discrete units. Traits are distinguishing characteristics that are inherited. Many in Mendel’s day thought traits were blended. Mendel made three key decisions in his experiments. use of purebred plants control over breeding observation of seven “either-or” traits Flower colour: Violet/white Flower position: Axial/terminal Pod colour: Green/yellow Pod shape: Inflated/constricted Seed colour: Yellow/green Seed shape: Round/wrinkled Stem height: Tall/dwarf Mendel drew three important conclusions. Traits are inherited as discrete units. Organisms inherit two copies of each gene, one from each parent. The two copies segregate during gamete formation. LAW OF SEGREGATION States that “ The two alleles for each trait segregate, or separate, during the formation of new zygotes, the alleles will combine at random with other alleles”. This law ensures that a parent, with two copies of each gene can pass on either allele. A. MENDEL’S LAW OF SEGREGATION (Monohybrid Crossing) 1. when Mendel crossed pure lines of different, competing phenotypes, he found that the F1 generation was uniform and matched one of the parents’ phenotypes example: P1 yellow seed X green seed = all F1 yellow seed 2. when F1 plants were crossed or selfed, the F2 plants had both P1 phenotypes in a ratio of roughly 3:1 3. using offspring from above F1 X F1 = F2 3 yellow seed: 1 green seed 3. thus, contrary to the popular belief of the time, recessive traits are not lost in a mixing of parental phenotypes – they are merely hidden in some “carrier” individuals 4. Mendel explained these ratios with what we now call his law of segregation; stated in modern terms: individuals normally carry two alleles for each gene, these alleles must segregate in production of sex cells 5. later investigations of cell division revealed the mechanism for segregation: the pairing and subsequent separation of homologous chromosomes during meiosis Crossing of a purple flower with a white flower Crossing of the F1 individuals DOMINANCE In genetics, dominance is the phenomenon of one variant (allele) of a gene on a chromosome masking or overriding the effect of a different variant of the same gene on the other copy of the chromosome. The first variant is termed dominant and the second recessive. This state of having two different variants of the same gene on each chromosome is originally caused by a mutation in one of the genes, either new (de novo) or inherited. The terms autosomal dominant or autosomal recessive are used to describe gene variants on non-sex chromosomes (autosomes) and their associated traits, while those on sex chromosomes (allosomes) are termed X-linked dominant, Xlinked recessive or Y-linked; these have an inheritance and presentation pattern that depends on the sex of both the parent and the child (see Sex linkage). Since there is only one copy of the Y chromosome, Y-linked traits cannot be dominant nor recessive. Dominance is not inherent to an allele or its traits (phenotype). It is a strictly relative effect between two alleles of a given gene of any function; one allele can be dominant over a second allele of the same gene, recessive to a third and co-dominant with a fourth. Additionally, one allele may be dominant for one trait but not others. Dominance is a key concept in Mendelian inheritance and classical genetics. Letters and Punnett squares are used to demonstrate the principles of dominance in teaching, and the use of upper case letters for dominant alleles and lower case letters for recessive alleles is a widely followed convention. A classic example of dominance is the inheritance of seed shape in peas. Peas may be round, associated with allele R, or wrinkled, associated with allele r. In this case, three combinations of alleles (genotypes) are possible: RR, Rr, and rr. The RR (homozygous) individuals have round peas, and the rr (homozygous) individuals have wrinkled peas. In Rr (heterozygous) individuals, the R allele masks the presence of the r allele, so these individuals also have round peas. Thus, allele R is dominant over allele r, and allele r is recessive to allele R. LAW OF INDEPENDENT ASSORTMENT States that “The alleles of two (or more) different genes get sorted into gametes independently of one another”. In other words, the allele a gamete receives for one gene does not influence the allele received for another gene. MENDEL LAW OF INDEPENDENT ASSORTMENT (Dihybrid Cross) There are two types of breeding processes to know the mechanism of genes and examine the inheritance of traits from parents and grandparents, one is monohybrid cross and the other is dihybrid cross. The latter occurs when the F1 generation offspring differ in two traits. It is a cross between two entities that are heterozygous for two different traits. Mendel carried out the following experiment for this cross: For crossing, he took a pair of contradicting characteristics or traits Mendel crossed round-yellow seed and wrinkled-green seed In the F1 generation, the outcome was seeds that were round and yellow The F1 generation indicated that the round and yellow traits are dominant while the green colour and the wrinkled shape were recessive traits. Self-pollination of F1 progeny resulted in four varying combinations of seeds in the subsequent generation, the F2 generation. The outcome and the dihybrid cross-ratio were – roundyellow, wrinkled-yellow, wrinkled-green, round-green and the ratio was – 9:3:3:1. EXPLANATIONS Dihybrid cross illustrates the inheritance of two characters Produces four phenotypes in the F2 generation When the F1 dihybrid progeny self-pollinate. If the two characters segregate together, the F1 hybrids can only produce the same two classes of gametes (RY and ry) that they received from the parents, and the F2 progeny will show a 3:1 phenotypic ratio. If the two characters segregate independently, the F1 hybrids will produce four classes of gametes (RY, Ry, rY, ry), and the F2 progeny will show a 9:3:3:1 phenotypic ratio. EXAMPLE: Two true-breeding pea plants—one with yellow-round seeds and the other with green-wrinkled seeds—were crossed, producing dihybrid F1 plants. Self-pollination of the F1 dihybrids, which are heterozygous for both characters, produced the F2 generation. The two hypotheses predict different phenotypic ratios. Note that yellow color (Y) and round shape (R) are dominant. YRYR P Generation yryr YR Gametes yr YRyr F1 Generation Hypothesis of dependent assortment Hypothesis of independent assortment 1⁄ Sperm 1⁄ 1⁄ F2 Generation (predicted offspring) 2 2 YR 1⁄ yr 2 Eggs 1⁄ 4 YR 4 1⁄ YR 2 1 YRYR YR Eggs YRyr 1⁄ 4 2 yr yryr YRyr 1⁄ 4 1⁄ 1⁄ 4 7 YRyr YRyr 14 yRyR 15 YRyr 16 Yryr 3⁄ 16 yRyr 3⁄ 16 Phenotypic ratio 9:3:3:1 101 32 yRyr 16 yr 9⁄ 108 Yryr 12 yR Phenotypic ratio 3:1 315 YRyr 8 11 10 13 4 4 YrYr YRyR 3⁄ 4 YRyR 6 9 4 Sperm yr 1⁄ Yr YRYr 1⁄ 4 yR 3 YRYr 5 YRYR 4 1⁄ Yr Phenotypic ratio approximately 9:3:3:1 yryr 1⁄ 16 PHENOTYPE & GENOTYPIC RATIO EXPLANATION PHYNOTYPIC RATIO 9 : 3 : 3 :1 PHYNOTYPE: 9 = YELLOW & ROUND 3 = YELLOW & WRINKLE 3 = GREEN & ROUND 1 = GREEN & WRINKLE GENOTYPIC RATIO 1 : 2 : 1 : 2 : 4 : 2 : 1 : 2 : 1 GENOTYPE: 1 = HOMOZYGOUS YELLOW AND ROUND (1-YRYR) 2 = HOMOZYGOUS YELLOW, HETEROZYGOUS ROUND (2,5YRyr) 1 = HOMOZYGOUS YELLOW, HOMOZYGOUS WRINKLE ( 6-YrYr) 2 = HETEROZYGOUS YELLOW, HOMOZYGOUS ROUND (3,9- YRyR) 4 = HETEROZYGOUS YELLOW, HETEROZYGOUS ROUND (4,7,10,13-YRyr) 2 = HETEROZYGOUS YELLOW, HOMOZYGOUS WRINKLE (8,14-Yryr) 1 = HOMOZYGOUS GREEN, HOMOZYGOUS ROUND (11-yRyR) 2 = HOMOZYGOUS GREEN, HETEROZYGOUS ROUND (12,15-yRyr) 1 = HOMOZYGOUS GREEN, HOMOZYGOUS WRINKLE (16- yryr) ALTERNATIVES OF INHERITANCE Additionally, there are other forms of dominance such as a) Incomplete dominance b) Co-dominance c) Multiple allele INCOMPLETE DOMINANCE Incomplete dominance (also called partial dominance, semidominance or intermediate inheritance) occurs when the phenotype of the heterozygous genotype is distinct from and often intermediate to the phenotypes of the homozygous genotypes. For example, the snapdragon flower color is homozygous for either red or white. When the red homozygous flower is paired with the white homozygous flower, the result yields a pink snapdragon flower. The pink snapdragon is the result of incomplete dominance. The plant incompletely expresses the dominant trait (R) causing plants with the Rr genotype to express flowers with less red pigment resulting in pink flowers. The colors are not blended together, the dominant trait is just expressed less strongly. CO-DOMINANCE This occurs when the contributions of both alleles are visible in the phenotype. For example, in the ABO blood group system, chemical modifications to a glycoprotein (the H antigen) on the surfaces of blood cells are controlled by three alleles, two of which are co-dominant to each other (IA, IB) and dominant over the recessive i at the ABO locus. The IA and IB alleles produce different modifications. The enzyme coded for by IA adds an N-acetylgalactosamine to a membrane-bound H antigen. The IB enzyme adds a galactose. The i allele produces no modification. Thus the IA and IB alleles are each dominant to i (i.e. IAIA and IAiA individuals both have type A blood, and IBIB and IBiB individuals both have type B blood), but IAIB individuals have both modifications on their blood cells and thus have type AB blood, so the IA and IB alleles are said to be co-dominant. Another example occurs at the locus for the betaglobin component of hemoglobin, where the three molecular phenotypes of HbA/HbA, HbA/HbS, and HbS/HbS are all distinguishable by protein electrophoresis. (The medical condition produced by the heterozygous genotype is called sickle-cell trait and is a milder condition distinguishable from sickle-cell anemia, thus the alleles show incomplete dominance with respect to anemia. This Punnett square shows co-dominance. In this example a white bull (WW) mates with a red cow (RR), and their offspring exhibit codominance expressing both white and red hairs. Co-dominance, where allelic products co-exist in the phenotype, is different from incomplete dominance, where the quantitative interaction of allele products produces an intermediate phenotype. For example, in co-dominance, a red homozygous flower and a white homozygous flower will produce offspring that have red and white spots. MULTIPLE ALLELES Multiple alleles exist in a population when there are many variations of a gene present. In organisms with two copies of every gene, also known as diploid organisms, each organism has the ability to express two alleles at the same time. They can be the same allele, which is called a homozygous genotype. Alternatively, the genotype can consist of alleles of different types, known as a heterozygous genotype. Haploid organisms and cells only have one copy of a gene, but the population can still have many alleles. Three or more kinds of genes occupying the same locus in individual chromosome are referred to as multiple alleles. When more than two possible alleles exist in a population In short many alleles of a single gene are called multiple alleles. Example of Multiple Allele 1. COAT COLOUR IN CATS 2. COAT COLOUR IN RABBITS Here, four alleles exist for the c gene. a) The wild-type version, C+C+, is expressed as brown fur. b) The chinchilla phenotype, cchcch, is expressed as blacktipped white fur. c) The Himalayan phenotype, chch, has black fur on the extremities and white fur elsewhere. d) The albino, or “colorless” phenotype, cc, is expressed as white fur. In cases of multiple alleles, dominance hierarchies can exist. In this case, 1. The wild-type allele is dominant over all the others. 2. Chinchilla is incompletely dominant over Himalayan and albino 3. Himalayan is dominant over albino. This hierarchy, or allelic series, was revealed by observing the phenotypes of each possible heterozygote offspring. OTHER EXAMPLES INCLUDE 3. Wings of Drosophila 4. Self-Sterility in Plants 5. Blood Groups in Man 6.The ‘Rhesus’ Blood Group in Man PROBABILITY Segregation, independent assortment and fertilization are random events and Reflect the rules of probability From the genotypes of parents, we can predict the most likely genotypes of their offspring using simple laws of probability. PROBABILITY SCALE The probability scale: ranges from 0 to 1; an event that is certain to occur has a probability of 1, and an event that is certain not to occur has a probability of 0. The probabilities of all possible outcomes for an event must add up to 1. Random events are independent of one another. The outcome of a random event is unaffected by the outcome of previous such events. Example: it is possible that five successive tosses of a normal coin will produce five heads; however, the probability of heads on the sixth toss is still 1/2. RULES OF PROBABILITY 1. Multiplication Rule states that the probability that independent events will occur simultaneously is the product of their individual probabilities. Question: In a monohybrid cross between pea plants (Rr), what is the probability that the offspring will be homozygous recessive? Rr Segregation of alleles into eggs Segregation of alleles into sperm Sperm Answer: Probability that an egg from the F1 (Rr) will receive an r allele = 1/2. Probability that a sperm from the F1 will receive an r allele = 1/2. The overall probability that two recessive alleles will unite at fertilization: 1/2 x 1/2 = 1/4. Rr 1⁄ R 2 1⁄ Eggs 1⁄ r 2 r r R R 2 r 2 R R 1⁄ 1⁄ 1⁄ 4 R 1⁄ 4 r 4 r 1⁄ 4 Multiplication rule also applies to dihybrid crosses Question: For a dihybrid cross, YRyr x YRyr, what is the probability of an F2 plant having the genotype YRYR? Answer: Probability that an egg from a YRyr parent will receive the Y and R alleles = 1/2 x 1/2 = 1/4. Probability that a sperm from a YRyr parent will receive the Y and R alleles = 1/2 x 1/2 = 1/4. The overall probability of an F2 plant with the genotype YYRR: 1/4 x 1/4 = 1/16. 2. Addition Rule states that the probability of an event that can occur in two or more independent ways = sum of the separate probabilities of the different ways. Question: In this cross between pea plants, Pp x Pp, what is the probability of the offspring being heterozygous? Answer: There are two ways a heterozygote may be produced: the dominant allele (P) may be in the egg and the recessive allele (p) in the sperm, or vice versa. So, the probability that the offspring will be heterozygous is the sum of the probabilities of those two possible ways: Probability that the dominant allele will be in the egg with the recessive in the sperm is 1/2 x 1/2 = 1/4. Probability that the dominant allele will be in the sperm and the recessive in the egg is 1/2 x 1/2 = 1/4. So, the probability that a heterozygous offspring will be produced is 1/4 + 1/4 = 1/2. Complex Genetics Problems A dihybrid or other multicharacter cross Is equivalent to two or more independent monohybrid crosses occurring simultaneously In calculating the chances for various genotypes from such crosses Each character first is considered separately and then the individual probabilities are multiplied together Multiple Locus Problem Question: What is the probability that a trihybrid cross between organisms with genotypes AaBbCc and AaBbCc will produce an offspring with genotype aabbcc? Answer: Segregation of each allele pair is an independent event, we can treat this as three separate monohybrid crosses: Aa x Aa: probability for aa offspring = 1/4 Bb x Bb: probability for bb offspring = 1/4 Cc x Cc: probability for cc offspring = 1/4 The probability that these independent events will occur simultaneously is the product of their independent probabilities (rule of multiplication). The probability that the offspring will be aabbcc is: 1/4 aa x 1/4 bb x 1/4 cc = 1/64 Problem 2 Question: Using garden peas, where and assuming the cross is PpYyRr x Ppyyrr: what is the probability of obtaining offspring with homozygous recessive genotypes for at least two of the three traits? Answer: Write the genotypes that are homozygous recessive for at least two characters, (note that this includes the homozygous recessive for all three). Use the rule of multiplication to calculate the probability that offspring would be one of these genotypes. Then use the rule of addition to calculate the probability of offspring in which at least two of the three traits would be homozygous recessive. Genotypes with at least two homozygous recessives PpyyRr - 1/4 x 1/2 x 1/2 = 1/16 ppYyrr - 1/4 x 1/2 x 1/2 = 1/16 Ppyyrr - 1/2 x 1/2 x 1/2 = 2/16 PPyyrr - 1/4 x 1/2 x 1/2 = 1/16 ppyyrr - 1/4 x 1/2 x 1/2 = 1/16 = 6/16 or 3/8 chance of two recessive traits Quantitative genetics i. Additive inheritance a. polygenic traits b. epistasis c. pleitropy ii. Environmental influence POLYGENIC TRAITS Definition Polygenic traits are traits that are controlled by multiple genes instead of just one. The genes that control them may be located near each other or even on separate chromosomes. Because multiple genes are involved, polygenic traits do not follow Mendel’s pattern of inheritance. Instead of being measured discretely, they are often represented as a range of continuous variation. Some examples of polygenic traits are height, skin color, eye color, and hair color. Polygenic traits are complex and unable to be explained by simple Mendelian inheritance alone. Mendelian inheritance is involved when one particular gene controls for a trait, and the traits are discrete. Polygenic traits also have dominant and recessive alleles, but so many genes play a role in an organism’s phenotype for these traits that the final result is the sum of many complex interactions. It can be hard or impossible to figure out one gene’s effect on a polygenic trait. Instead of being expressed in a ratio as single-gene traits are, polygenic traits are expressed continuously and usually form a bell curve when charted. For example, human skin color varies on a continuous gradient from light to dark, and it is not quantifiable; one’s skin color can only be compared to others for a sense of how light or dark his or her skin tone is. Some people have extremely light or extremely dark skin, but the majority of the world’s people do not, and fall somewhere in the middle. This figure depicts a bell curve. For a trait like skin color, shade (light to dark) would be on the X (horizontal) axis, and proportion of population would be on the Y (vertical) axis. When data form a bell curve, they are said to show a normal distribution. A bell curve depicting skin color trait. When data form a bell curve, they are said to show a normal distribution. HEIGHT Human height is controlled by many genes; in fact, there are over 400 genes related to height, and all of these genes interact to make up a person’s phenotype. This is a very large number, but it makes sense because height is a compilation of the lengths of many different body parts, such as leg bones, the torso, and even the neck. Polygenic traits can also be influenced by an organism’s environment. If a person gets inadequate nutrition during childhood, they can have stunted growth and end up smaller and shorter than they would otherwise. It is estimated that 90% of a person’s adult height is controlled by genetics, and 10% is affected by the environment. SKIN COLOR In humans, skin color is influenced by many things, but the pigment melanin influences most of a person’s phenotype. In general, the more melanin a person has, the darker their skin is. Albino people produce no melanin at all. The body creates more melanin to protect against the sun’s UV rays, which is why skin darkens after prolonged sun exposure. The amount and type of melanin that a person produces, such as eumelanin, pheomelanin, and neuromelanin, is controlled by multiple genes, and the different types of melanin interact to form the final phenotype. For example, people with red hair have more pheomelanin and often have a pinkish skin tone. EYE COLOR There are 2 major human eye color genes, OCA2 and HERC2, but at least 13 other genes also play a role. The colored part of a person’s eye is the iris. It is a muscle that changes the size of the pupil in order to change the amount of light that is absorbed by the retina. A person’s eye color is determined by the pigmentation of their irises, but also by the way the cells in their irises scatter light. As with skin color, eye color is affected by the presence of melanin. People with brown eyes have a lot of melanin, while people with blue eyes have low melanin in the front part of the iris that is visible. Green eyes are caused by multiple factors; they are the result of a light brown iris combined with a blue tone given by light scattering. EPISTASIS Epistasis is the interaction between genes that influences a phenotype. Genes can either mask each other so that one is considered “dominant” or they can combine to produce a new trait. It is the conditional relationship between two genes that can determine a single phenotype of some traits. At each locus are two alleles that dictate phenotypes. They can affect one another in such a way that, regardless of the allele of one gene, it is recessive to one dominant allele A gene that masks another gene’s expression is said to be epistatic and the gene whose expression is masked by a nonallelic gene is said to be hypostatic. TYPES OF EPISTASIS There are six (6) common types of epistasis gene interactions: Dominant Epiatasis Dominant Inhibitory Epistasis, Duplicate Dominant Epistasis, Duplicate Recessive Epistasis, Polymeric Gene Interaction, and Recessive Epistasis When a dominant allele masks the expression of both dominant and recessive alleles at another locus, it is referred to as dominant epistasis or simple epistasis. When it is a recessive allele that masks the expression, it is called recessive epistasis. Some genes can also mask other genes by suppression. This is referred to as dominant inhibitory or suppression epistasis because the gene is acting as a suppressor, or a factor that prevents the expression of another allele. Duplicate types of epistasis depend on two loci. When there is a dominant allele masking the expression of recessive alleles at two loci, this is known as duplicate dominant epistasis or duplicate gene action. When there is a recessive allele masking the expression of dominant alleles at two loci, this is known as duplicate recessive epistasis. It is also known as complementary gene action because both genes are required in order for the correct phenotype to be present. Polymeric gene interaction is the combination of two dominant alleles that intensifies the phenotype or creates a median variation. Alone, each dominant allele produces a physical trait different from the combined dominant alleles. Therefore, this creates three phenotypes for only two dominant alleles. This shows that neither dominant allele is prevailing over the other dominant allele. PLEIOTROPY Pleiotropy refers to the expression of multiple traits by a single gene. These expressed traits may or may not be related. In pleiotropy, one gene controls the expression of several phenotypic traits In several breeds of cattle, a single gene responsible for double muscling is also associated with reduced fertility, lower calf survival and sometimes increased stress susceptibility. Pleitropy can be spoken of in various forms: Gene Pleiotropy, Developmental Pleiotropy, Selectional Pleiotropy, and Antagonistic Pleiotropy. Gene pleiotropy is focused on the number of traits and biochemical factors impacted by a gene. Developmental pleiotropy is focused on mutations and their influence on multiple traits. Selectional pleiotropy is focused on the number of separate fitness components affected by a gene mutation. Antagonistic pleiotropy is focused on the prevalence of gene mutations that have advantages early in life and disadvantages later in life.