Year 9 Biology Photograph by Noha El Naggar Name:________________ Form: ________________ Teacher:______________ Table of Contents Command Terms and definitions 3 Unit 1: Characteristics of living organisms and cells 7 • • • • • • Characteristics of life Cells and levels of organisation Specialised Cells Microscope Biological Drawings Dichotomous Keys Unit 2: Classification and adaptation • • • • • • Binomial system DNA 5 Kingdoms of life Viruses, bacteria, and Fungi Plants Animals 26 26 28 29 32 38 41 Unit 3: The movement of molecules • Diffusion • Osmosis • Active Transport 49 49 51 55 Unit 4: Enzymes 56 • Features • Factors that affect enzymes 56 57 Unit 5: Nutrition 59 • Seven food groups plus one ▪ Carbohydrates ▪ Fats 7 9 13 16 18 21 59 ▪ Proteins ▪ Vitamins ▪ Minerals ▪ Water 1 ▪ Fibre ▪ Additives • 6 Food tests and the energy test • Nutrition and malnutrition Unit 6: Plant Nutrition • Plant and leaf structure • Photosynthesis • Photosynthesis Experiments Chlorophyll Carbon Dioxide Light • Rate of photosynthesis and limiting factors • Carbon Dioxide • Light • Temperature • Stomatal Number • Greenhouses Unit 7: Animal Nutrition • Ingestion: Mouth Teeth Care of teeth Tooth Decay Animal Dentition • Swallowing • Digestion: Stomach and small intestine • Absorption: Small and large intestine • Egestion: Anus Unit 8: Ecology • • • • • • • Energy Loss Food chains Food web Pyramids numbers, biomass and energy Food chain efficiency Invasive Species Population Size 72 78 83 84 87 88 Water Mineral Ion Requirements Oxygen Production 96 101 102 104 108 109 110 115 117 118 121 123 126 131 133 134 2 Command terms Exam questions will ask you to do any of the following. Lots of marked can be lost if you do not understand the command terms, so go and learn them! 1. Define (the term(s) … ) is intended literally, only a formal statement or equivalent paraphrase being required. 2. What do you understand by/What is meant by (the term(s) … ) normally implies that a definition should be given, together with some relevant comment on the significance or context of the term(s) concerned, especially where two or more terms are included in the question. The amount of supplementary comment intended should be interpreted in the light of the indicated mark value. 3. State implies a concise answer with little or no supporting argument (e.g. a numerical answer that can readily be obtained ‘by inspection’). 4. List requires a number of points, generally each of one word, with no elaboration. Where a given number of points is specified this should not be exceeded. 5. (a) Explain may imply reasoning or some reference to theory, depending on the context. It is another way of asking candidates to give reasons. The candidate needs to leave the examiner in no doubt why something happens. (b) Give a reason/Give reasons is another way of asking candidates to explain why something happens. 6. Describe requires the candidate to state in words (using diagrams where appropriate) the main points. Describe and explain may be coupled, as may state and explain. 7. Discuss requires the candidate to give a critical account of the points involved. 8. Outline implies brevity (i.e. restricting the answer to giving essentials). 9. Predict implies that the candidate is expected to make a prediction not by recall but by making a logical connection between other pieces of information. 10. Deduce implies that the candidate is not expected to produce the required answer by recall but by making a logical connection between other pieces of information. 11. Suggest is used in two main contexts, i.e. either to imply that there is no unique answer (e.g. in biology there are a variety of factors that might limit the rate of photosynthesis of a plant in a greenhouse), or to imply that candidates are expected to apply their general knowledge of the subject to a ‘novel’ situation, one that may be formally ‘not in the syllabus’ – many data response and problemsolving questions are 3 of this type. 12. Find is a general term that may variously be interpreted as calculate, measure, determine, etc. 13. Calculate is used when a numerical answer is required. In general, working should be shown, especially where two or more steps are involved. 14. Measure implies that the quantity concerned can be directly obtained from a suitable measuring instrument (e.g. length using a rule, or mass using a balance). 15. Determine often implies that the quantity concerned cannot be measured directly but is obtained from a graph or by calculation. 16. Estimate implies a reasoned order of magnitude statement or calculation of the quantity concerned, making such simplifying assumptions as may be necessary about points of principle and about the values of quantities not otherwise included in the question. 17. Sketch, when applied to graph work, implies that the shape and/or position of the curve need only be qualitatively correct, but candidates should be aware that, depending on the context, some quantitative aspects may be looked for (e.g. passing through the origin, having an intercept). In diagrams, sketch implies that simple, freehand drawing is acceptable; nevertheless, care should be taken over proportions and the clear exposition of important details 4 Definitions You need to learn these, no ifs/buts maybe....learn em! These come up all the time on exams Movement - An action by an organism or part of an organism causing a change of position or place. Respiration - The chemical reactions in cells that break down nutrient molecules and release energy for metabolism. Sensitivity - The ability to detect or sense stimuli in the internal or external environment and to make appropriate responses. Growth - A permanent increase in size and dry mass by an increase in cell number or cell size or both. Excretion - Removal from organisms of the waste products of metabolism (chemical reactions in cells including respiration), toxic materials, and substances in excess of requirements. Nutrition - Taking in of materials for energy, growth and development; plants require light, carbon dioxide, water and ions; animals need organic compounds and ions and usually need water. Species - A group of organisms that can reproduce to produce fertile offspring. Binomial system of naming species - An internationally agreed system in which the scientific name of an organism is made up of two parts showing the genus and species. Tissue - A group of cells with similar structures, working together to perform a shared function. Organ - A structure made up of a group of tissues, working together to perform specific functions. Organ System - A group of organs with related functions, working together to perform body functions. Diffusion - The net movement of particles from a region of their higher concentration to a region of their lower concentration down a concentration gradient, as a result of their random movement. Osmosis - The net movement of water molecules from a region of higher water potential (dilute solution) to a region of lower water potential (concentrated solution), through a partially permeable membrane. Active transport - The movement of particles through a cell membrane from a region of lower concentration to a region of higher concentration using energy from respiration. Catalyst - A substance that increases the rate of a chemical reaction and is not changed by the reaction. Enzymes - Proteins that function as biological catalysts. -Amylase breaks down Starch to Maltose. -Maltose is broken down by Maltase to Glucose. -Protease breaks down Protein to Amino Acids. -Lipase breaks down Fats to Fatty Acids and Glycerol. 5 Photosynthesis - The process by which plants manufacture carbohydrates from raw materials using energy from light. Limiting Factor - Something present in the environment in such short supply that it restricts life processes. Mechanical digestion - The breakdown of food into smaller pieces without chemical change to the food molecules. Chemical digestion - The breakdown of large, insoluble molecules into small, soluble molecules. Absorption - The movement of small food molecules and ions through the wall of the intestine into the blood. Assimilation - The movement of digested food molecules into the cells of the body where they are used, becoming part of the cells. Egestion - The passing out of food that has not been digested or absorbed, as faeces, through the anus. Food Chain - Show the transfer of energy from one organism to the next, beginning with a producer. Food Web - A network of interconnected food chains. Producer - An organism that makes its own organic nutrients, usually using energy from sunlight, through photosynthesis. Consumer - An organism that gets its energy by feeding on other organisms. Herbivore - An animal that gets its energy by eating plants. Carnivore - An animal that gets its energy by eating other animals. Decomposer - An organism that gets its energy from dead or waste organic material. 6 Unit 1: Characteristics of living organisms and cells Biology ~ the study of Life So how do we define what it is to be alive? What’s living and what’s non-living? Look at the list below and decide whether the things are alive or not. Living or not? • • • Living or not? How did you decide? What characteristics do they have in common? What life processes do all living things carry out? 7 Scientists have identified the key characteristics that all living things have in common which are collectively known as the Seven Life Processes. M Movement: R Respiration: an action by an organism or part of an organism that causes a change in position. the chemical reactions that break down nutrient molecules in living cells to release energy. Sensitivity: S the ability to detect or sense changes in the environment (stimuli) and to make responses. G Growth: R Reproduction: E Excretion: N Nutrition: a permanent increase in size and dry mass by an increase in cell number or cell size. the processes that make more of the same kind of organism. the removal of toxic materials, the waste products of metabolism, and substances in excess from an organism. the taking in of nutrients which are organic substances and mineral ions, containing raw materials or energy for growth and tissue repair, absorbing and assimilating them. * Please note: Viruses are not considered alive as they only carry out reproduction and even that they must do inside a host cell. 8 Cells – the basic units of life ❖ All living organisms are made up of cells. ❖ Living things can either be unicellular (one cell only) or are multicellular (made up of many cells). ❖ Unicellular organisms carry out all seven life processes in a single cell. ❖ Larger, more complex organisms, which are made up of many cells, have different cells to carry out different functions. These cells are said to be specialised. ❖ Multicellular organisms are made up of many cells. Levels of organisation in a multicellular organism Simple More complex • A cell is the basic unit of life. • These cells are organised into groups of similar shaped cells working together to perform a particular function known as a TISSUE. e.g. muscle cells form a muscle used for movement • Tissues which work together to form a structure and perform a specific function, are known as an ORGAN e.g. muscle cells form the heart which beats as a result of all muscle cells contracting at the same time. • Organs with related functions which work together to perform specific body functions are known as an ORGAN SYSTEM. e.g. the circulatory system made of the heart and blood vessels. 9 Levels of organisation in a multicellular organism Cells Tissue Organ Organ System On the diagrams below, write the names of the organs on the lines provided. Use the words in the box. Brain Leaf Root Flower Liver Stem Intestines Stomach Lungs Fill in the correct word in each of the sentences. Use the words in the box. Circulatory a A group of organs working together is called an Digestive organ ____________________. Leaves b Plants take water in through their___________. Nervous The water travels up the _________________. Photosynthesis Some of the water is used to make food using Roots __________________. A lot of the water is lost Stem System by the ______________. c Food is digested in the ____________ system. d The heart is part of the ____________________ system. e The brain is part of the ____________________ system. 10 Animal and Plant Cells Structure Found in Function Cell membrane Animal and Plant ▪ ▪ ▪ ▪ Cytoplasm Animal and Plant ▪ jelly-like substance ▪ contains enzymes which control all the chemical reactions of the cell (metabolism) ▪ Respiration to release energy occurs here with the help of the mitochondria. Nucleus Animal and Plant ▪ Contains the genetic information of the cell in the form of DNA. ▪ DNA codes for proteins and physical characteristics. It is considered to be the ‘blueprint’ of the cell and organism. ▪ DNA condenses during mitosis and forms packets known as chromosomes. Glycogen Granules Animal ▪ Extra glucose is converted to glycogen especially in the cytoplasm of liver and muscles cells ▪ Glycogen granules can be broken down to release glucose (sugar) for when quick energy is needed. ▪ Glycogen is a polysaccharide (made from many subunits of sugar) 0.00001 mm thick, very thin Made of fats, proteins and sugars maintains cell shape partially permeable membrane which controls what can enter/leave the cell 11 Cell Wall Vacuoles Plant ▪ Made of cellulose (polysaccharide) ▪ It’s a tough, inflexible wall that encloses the plant cell ▪ It provides support and rigidity to the cells and to the plant as a whole. ▪ Fully permeable Plants have permanent ones. ▪ It contains cell sap ▪ It is a storage organelle and holds salts, sugars, amino acids and other nutrients needed by the cell. * Animals may have temporary ones for movement of molecules into/out of cells. Chloroplast Plants ▪ contain chlorophyll (a green pigment) ▪ site of photosynthesis and where the cell is able to produce sugar using sunlight. ▪ only found in aerial parts of a plant not in the roots. Starch Granules Plants ▪ found inside chloroplasts ▪ Extra glucose is converted to starch (polysaccharide) for storage. ▪ It can be converted back to glucose for respiration or sucrose for transport. Mitochondria Animals and Plants ▪ Extremely small (only visible with an electron microscope) ▪ Site of respiration and energy for the cell. ❖ Construct a table to show the differences and similarities between plant and animal cells using a light microscope. 12 Specialised Cells ❖ In multicellular organisms, there are cells which have become adapted to perform their function better. ❖ Cells with features that enable them to perform their specific functions better are said to be SPECIALISED. ❖ Always relate structure to function, e.g reb blood cells have no nucleus which allows them to carry more haemoglobin. Animal Cells 1. Red blood cell – Biconcave disc shaped. They have no nucleus which allows them to pack more haemoglobin into their cells. Haemoglobin helps to carry oxygen by forming oxyhaemoglobin. Also in the centre of the cell is an area of thin cytoplasm which allows rapid diffusion of gases. The function of the red blood cell is to transport oxygen around the body. * When haemoglobin binds with carbon monoxide (found in cigarette smoke) it binds permanently with it forming carboxyhaemoglobin and it will no longer be able to transport oxygen. 2. Ciliated cells – have projections known as cilia which are able to beat in unison to move mucus (with dirt and bacteria trapped in it) 3. Muscle cells – contain protein fibres which slide between each other causing the cell to contract (shorten) and so as a tissue allow movement in an organism. 13 Other animal cells that you should know are sperm cells, egg cells (ova) and nerve cells. You will study these later in the course (Year 10 and 11) but ask you teacher to show you them and draw and label them in the spaces below. Sperm cell Egg Cell Nerve cell 14 Plant Cells 1. Xylem vessels – these cells have been lignified which allows them to hold water. Lignin is not permeable to water and so the cells die. This structure become part of the plant’s transport system and allows conduction of water and mineral ions within the plant and provides support. Pits are non-lignified parts of cell walls that allow sideways (lateral) movement of water 2. Root hair cells – have a long projection which increases surface area for the absorption of water and mineral ions such as magnesium and nitrates. ❖ Water and mineral ions are absorbed into the root hair cell. Water is drawn in by the lowering of the pressure at the top of the plant by water vapour leaving the leaf via stomata by the transpiration stream. Water and mineral ions are transported in the stem of the plant in the xylem vessels. 15 The Microscope 1. Using the words in the box below label the parts of the microscope. mirror objective lens eyepiece clip stage focusing knob 2. Here are some instructions on using a microscope. Put the number ‘1’ next to the instruction you should do first. Put the number ‘2’ next to the instruction you should do next and so on. _____ Look into the eyepiece lens. _____ Place the smallest objective lens over the hole in the stage. _____ Place the slide on the stage. _____ Turn the coarse focusing wheel until what you see is clear. _____ Turn the coarse focusing wheel to make the objective lens as close to the stage as possible. _____ Adjust the light source. 16 You are given a microscope which has three objective lenses: X10, X20 and X40. The microscope has two eyepiece lenses: X5 and X7.5. Make a table like the one below to show all the possible magnifications you could get. Magnification of eyepiece lens Magnification of objective lens Total magnification You will need to be able to label a plant and animal cell as viewed under a microscope. Look at the photographs of the cells below and label using label lines all the visible features of the cells. When a diagram is made, or a photograph taken, it may not be easy to directly show the correct-size, such as, when a structure is really small or very large. The true size of an organism can be calculated using a combination of actual measurement and a known magnification. Magnification = drawing measurement Actual length * Using the formula above, calculate what is the actual size of the plant and animal cell shown. D MxA 17 Biological Drawings. ❖ Required for Paper 6 (alternative to practical) ❖ The drawing is a simple outline of the organism listing any key features that allow it to be identified. ❖ No shading. It is not a test of your artistic talent and so it is not allowed. The examiners will award marks under the following criteria: • • • • • O (outline) S (scale) P (proportion) A (accuracy) L (labelling) Outline You should use an HB pencil as mechanical pencils tend to scar the page and so make it difficult to rub out if you make mistakes. The outline must be a continuous line with no breaks or shading, so it is recommended you draw the outline lightly at first then go over it again darker once you are satisfied with it. Scale The size of diagram must take up at least half of the space provided and if they ask for a large diagram it must be as large as or larger than the photograph in the question Proportion When enlarging your diagram all parts of the diagram must be equally enlarged. Therefore, all parts of the diagram have been magnified by the same amount. You should include the magnification of your diagram. i.e. X2 or X3 Accuracy When completing your diagram you must include the same number of features as shown in the photograph. e.g. If a flower has 5 five petals, you must draw five If a fruit has 20 seeds, you must draw twenty If an invertebrate has 8 legs, you must draw eight. 18 Labelling Labels are done in PENCIL too. You should draw a straight horizontal line with a ruler clearly to the centre of the object being named. Remember you should label key features that distinguish it from other living organisms. i.e. fish include gills, fins insects include waxy exoskeleton, limbs, wings, antennae flowers include petals, sepals, stigma, anthers *To learn key features for Paper 6 you should refer to Unit 2. There are two main methods to draw biological drawings: 1. Draw grid lines. * Draw a cross through the centre of the photograph. * Draw a new grid lightly (so its easy to rub off later) in the space provided for your drawing then draw one part of the picture (section of the grid) at a time. * Draw using light, smooth lines with no shading. 1. The grid has been drawn for you, now you must complete it for the flower shown as the example. 19 2. Graph Grid • Draw graph grid lines over your photograph 10mm X 10mm. • Next draw graph grid lines 20mmX20mm in very light pencil in the space provided for your diagram. • Then fill in squares accordingly. Complete the drawing below. 20 Dichotomous Keys ❖ Another useful skill in biology is making and using keys to identify organisms based on key features that are visible. ❖ Dichotomous means that you are given two descriptions at a time to choose from and each choice leads you to another pair of descriptions until you reach the final stage where you are given the name of your organism. ❖ There are two main types: Branching keys Statement keys Branching Keys 21 Branching keys Use this branching key to identify these two breeds of cow. Cow 1 is _______________. Cow 2 is ____________________. 2 Use this branching key to identify these two dinosaurs. Dinosaur 1 is __________________. Dinosaur 2 is __________. 22 Statement Keys Use this statement key to identify the birds below. Write the names in the lines underneath each picture. 1 Feet are webbed Feet are not webbed go to 2 go to 5 2 Neck feathers are all white Neck feathers are not all white go to 3 go to 4 3 Hooked beak Straight beak Great Black-backed Gull Whooper Swan 4 Long, slender beak Short beak Avocet Brent Goose 5 Underside feathers mostly white go to 6 Few or no white underside feathers go to 8 6 Long, thin beak Short beak 7 Some sticking up feathers on head Lapwing All feathers are flat Ringed Plover 8 Head feathers all one colour go to 9 Head feathers have different colours go to 10 9 Hooked beak and sharp talons Golden Eagle Straight beak and no sharp talons Carrion Crow 10 All feathers on back are black Feathers on back are speckled Bird 1 is ______________ Bird 2 is ______________ Oyster Catcher go to 7 Bird 3 is ______________ Coot Grey Plover Bird 4 is ______________ 23 Statement Keys Use this statement key to identify which plants the leaves below came from. Write the names of the leaves in your book. 1 Leaf edges are jagged leaf edges are smooth go to 2 go to 8 2 Leaf edges do not have hard spines Leaf edges have sharp hard spines go to 3 Holly 3 Leaves are not arranged in opposite pairs go to 4 Leaves arranged in opposite pairs go to 5 4 Leaves are long and narrow Leaves are not long and narrow Crack Willow go to 6 5 Leaves nearer branch are small Leaves are roughly the same size Common Ash Rowan 6 5–7 leaves grow from a central point Horse Chestnut Leaves do not grow from a central point go to 7 7 Leaf has many lobes Leaf has no lobes and a pointed tip Sycamore Lime 8 Leaf has no lobes Leaf has lobes go to 9 go to 10 9 Leaves grow in opposite pairs Three leaves grow from a central point go to 11 Laburnum 10 Each leaf has five lobes Each leaf has more than five lobes Field Maple English Oak 11 Stem ends in a pair of leaves Stem ends in a single leaf Box False Acacia Leaf 1 is _______________ 2 3 Leaf 2 is _______________ Leaf 3 is ___________ Using the key, write down the features of False Acacia leaves. You will need to work through the key backwards. Draw pictures of what you think Rowan, Sycamore and False Acacia leaves might look like on a stem. 24 A Key to Life 25 Unit 2: Classification and Adaptation Classification and diversity of living organisms Once you have learned to distinguish between living and non-living, you then need to learn how to classify living things. Carl Linnaeus of Sweden in 1735 introduced the basis of modern taxonomy (classification).This groups organisms according to how closely related they are). With this in mind he invented the Binomial System. Binomial System All living organisms are given two names in Latin to show how closely related they are to each other. 1 Genus name, written first and starts with a capital letter, e.g. Homo (same) 2 species name, written second and starts with a small letter, e.g. sapien (modern) So Homo sapiens is modern man when printed, it’s typed in Italics When handwritten it is Homo sapien - it’s simply underlined In the past organisms, were grouped together based on several factors: • • • • Physical Features i.e. teeth, wings, scales Habitat Methods of Nutrition Methods of reproduction, including if organisms were capable of interbreeding • Life cycle Nowadays, the techniques used to organise living things is more scientific and uses genetic information such as RNA and DNA sequencing to show how closely related organisms are to each other and the rest of living world. This method of study is known as cladistics. Cladistics shows us how we are related on a biochemical level (DNA/RNA), while taxonomic classification is based 26 on visible, physical features. Cladistics is a more accurate, scientific way of classification. Organisims which share a more recent ancestor are more closely related and have base sequences in DNA that are more similar, as opposed to a more distant ancestor. Every living thing, or organism has got at least one thing in common, that one thing is DNA. How closely related the organisms are, the more similar their DNA is. Here is how a “clade” or “cladogram” looks like 27 DNA (Deoxyribonucleic Acid) • DNA is a polymer made up of nucleotides. • The structure of DNA consists of two strands coiled together to form a double helix. • Each strand contains chemicals called bases. • There are cross-links between the strands which are formed by pairs of bases. • The bases always pair up in the same way: A with T, and C with G, there full names are Adenine, Thymine, Cytosine and Guanine, but you only need to know the letters. Nucleotide DNA Use this space for additional notes ____________________________________ ____________________________________ ____________________________________ ____________________________________ ____________________________________ ____________________________________ ____________________________________ ____________________________________ 28 The Living World There are 5 major groups of living organisms known as Kingdoms. Kingdom Prokaryotes Protoctista Fungi Plantae Angiosperm Phylum Algae Protozoans Monocotyledons Class Eudicotyledons Living Things Order Family Genus Species Living things are organised from the largest group (Kingdom) down to the smallest group (species) of closely related organisms. So organisms of the same species may interbreed as they are so closely related which is why ALL dogs, even though they may look remarkably different, are still able to produce puppies. However, when organisms belonging to the same genus try to interbreed they produce infertile offspring which are unable to reproduce. For example, when a female horse and male donkey interbreed a mule is born. It has characteristics of both parents which make it good for farming but it is unable to produce more of itself. Organisms are rarely able to interbreed beyond such groupings as they are related but so distantly that it is no longer possible either physiologically or behaviourally. 29 The Living World Animalia Kingdom Vertebrate s Invertebrates Chordate Phylum Molluscs Nematodes Annelids Arthropods Class Fish Amphibian s Insects Order Family Genus Species Birds Crustaceans Reptiles Mammals Arachnids Myriapods ❖ One easy way to remember a list is to use mnemonics, where you take the first letter of each word from the list and make a sentence with words beginning with the same first letters. i.e. Kingdom Phylum Class Order Family Genus Species Kuwait Produces Crude Oil For General Sale 30 The Variety of Life Let’s begin with the simplest organisms such as the unicellular organisms which are made up of only one cell and yet still carry out all seven of the life processes known collectively as MRS GREN. They made be small but they each have their own kingdom. They are the: • Viruses (included only due to size but remember they are not truly alive and so have no Kingdom) • Prokaryotes (Bacteria) • Protoctista (Algae and Protozoans) • Fungi (Yeast are unicellular but Fungi do have some multicellular organisms such as mushrooms) ❖ As most of these are unicellular, they are incredibly small and so a microscope must be used to see them, they are referred to as microscopic. Only Fungi (and a few Protoctista but they are not on the syllabus) have individuals which are large enough to be seen without a microscope. Mushrooms are macroscopic and can be viewed with the naked eye. 31 • Viruses ❖ Extremely small and can only be seen with an electron microscope at a magnification of X30 000. They are 50X smaller than bacteria. ❖ The electron microscope was only invented in 1931 by Ernst Ruska and Max Knoll so we had no way of knowing what these tiny particles looked like but we knew they caused disease. ❖ Not alive. Their only true living quality is their ability to reproduce but they can only do this when they have infected a host cell. ❖ They are made up of a central core of genetic information which can be either RNA or DNA surrounded by a protein coat known as a capsid, made up of subunits of capsomeres. ❖ They have NO Cytoplasm Nucleus Organelles Cell membrane. membrane from previous host cell 32 • Prokaryotes or Bacteria ❖ Larger than viruses and can be seen with an ordinary light microscope. They range in size from 0.5-5μm *(1μm = 1∕1000mm) ❖ They are living and as such carry out all seven life processes within the one cell. ❖ They are composed of: a cell wall made of protein, sugar and fats. a cell membrane made of fats and proteins. (All livings things have one) cell contains cytoplasm (a jelly substance where all chemical reactions take place for the cell known as metabolism) No nucleus but they do have genetic information as one large single circular strand of coiled DNA called its chromosome. And there are some smaller DNA circular strands known as plasmids, which are important for genetic engineering. ❖ They may have: ▪ Flagellum used for movement or fimbria (look like cilia). ▪ Slime capsule used for protection from Fungi and our antibiotics. 33 • Bacteria Bacteria are often classified according to their shape. Importance of Bacteria to humans Bacteria can be both helpful and harmful and it may even be the same bacteria that are both. Activity Helpful Harmful Decomposing a) Dead organisms, litter, manure are converted into simple nutrients for green plants to use b) Sewage treatment, so preventing water pollution. a) Causes rotting of food and leads to wastage. Circulating Nitrogen a) Nitrogen-fixing bacteria found in root nodules of leguminous plants. They fix nitrogen gas from air and so improve soil quality. b) Nitrifying bacteria convert ammonia to nitrates a) Denitrifying bacteria converting useful nitrates back to inert nitrogen. In Industry a) dairy products i.e. used to make yoghurt*and cheese b) wine making c) biofuel a) causes milk to sour b) causes wine to sour c) may damage oil lubricating engines Health a) producing antibiotics b) producing human hormones and enzymes by genetic engineering a) causing disease in humans and animals * Yoghurt is made using Lactobacillus (converts lactose into lactic acid causing milk to clump and curdle) and Streptococcus (makes yoghurt buttery in texture). 34 • Fungi There are three main types: yeasts, moulds and mushrooms. Yeast ❖ They are unicellular. ❖ Important for alcohol production and used in fermenters to make SCP (Single Celled Protein used to produce protein supplements for vegetarians or as cattle feed) ❖ They are composed of: a cell wall made of chitin. a cell membrane made of fats and proteins. cytoplasm containing vacuoles, oil droplets and glycogen granules *These features are the same for moulds and mushrooms a nucleus (Double stranded DNA) and so are eukaryotes Moulds Macroscopic Moulds consist of filaments known as hyphae. The hyphae form a mesh of threads known as mycelium through which they feed using extracellular enzymes. They often feed on dead or decaying matter and so are called saprophytic or they can be parasitic, where they feed off living organisms and cause harm. Some have a nucleus, some have many nuclei (multinucleate). Have no true cross wall separating hyphae but instead have Septa (supporting cross walls with many holes), this means solutes in cytoplasm simply diffuse along the whole of the organism as it’s all connected. 35 Moulds Cell membrane, cytoplasm and vacuoles are present. No chloroplasts and so are heterotrophic; they must feed off of other living things to gain energy. Reproduce asexually by producing spores either by budding off or in a sporangium. Mushrooms Multicellular networks of mycelium made up of many hyphae which spread over many metres in the surface layers of the soil. In autumn or in the rainy season, they produce a fruiting body known as a mushroom which releases the spores from its gills to be carried away by air currents. 36 Complete the following table once you have reviewed the characteristics of viruses, bacteria (prokaryotes) and fungi, to check you have understood the key differences and similarities. Viruses Bacteria Fungi Living or not? Size Outer covering or cell wall (include what it is made of) Cell membrane Genetic Material Type and is it found in a nucleus Does it have cytoplasm? Does it have any organelles? Key features Example 37 • Plants ❖ Multicellular organisms. They are made up of many cells. ❖ Autotrophic as they are able to photosynthesise (make sugar for food energy using sunlight) ❖ They are composed of: ❖ a cell wall made of cellulose a cell membrane made of fats and proteins. (All living things have one) a nucleus and so are eukaryotes. It contains double stranded DNA. cytoplasm, site of chemical reactions or metabolism. organelles include vacuoles containing cell sap, chloroplast for photosynthesis and starch granules for storage of sugar. We will look only at the phylum angiosperms which are commonly called the flowering plants. The two classes are listed below. Monocotyledons one cotyledon (food store for its embryo plant in the seed) Long, narrow leaves with parallel veins and a smooth edge Non-branching stem Fibrous root Flower parts in 3’s Scattered vascular bundles (plant transport system) e.g. maize, all cereals, grass, palm trees Eudicotyledons Two cotyledons (food stores) Broad leaves with branching veins and a toothed edge Branching stem Tap root Flower parts in 5’s Vascular bundles form a ring e.g. beans and trees 38 Label the key feature for each class and complete the leaves for the eudicotyledons. Monocotyledons Eudicotyledons 39 Ferns Over to you here, find out about ferns. You will be working on some skills here, research and biological drawings. You need a diagram ( labelled) and some characteristic features. Remember, no copy and paste, don’t transcribed Wikipedia, use a few sources and write short concise notes. Only use words that you understand, if there is a word that you don’t understand, look it up, write down the meaning and there you go, you have learned something!. 40 Animals Heterotrophic so must feed on other living things for energy. Multicellular organisms They are made up of many cells, They are composed of: a cell membrane made of fats and proteins. (All living things have one) a nucleus and so are eukaryotes. It contains double stranded DNA. Cytoplasm containing mitochondria (respiration) and glycogen granules (sugar storage). ❖ Animals can be divided clearly between two main branches. Those with backbones known as the vertebrates or scientifically as the phylum chordata. And those with no backbones known collectively as the invertebrates but are composed of many phyla. 41 Vertebrates All vertebrates have: ▪ a bony backbone surrounding the spinal cord ▪ two pairs of limbs ▪ a post anal tail (a tail that starts behind the anus) Vertebrates are divided into five classes. Vertebrates Fish Amphibians Reptiles Birds Mammals Fish - Body consists of head, thorax∕abdomen, and tail. streamlined shape damp overlapping scales breathe through gills fins: tail fin for locomotion, and lateral and dorsal fins for orientation in water Lateral line canal detects vibrations in the water to find food and avoid predators Jelly eggs laid in water Amphibians - Body consists of a head, thorax and an abdomen with two pairs of limbs. - Moist skin - Shell-less eggs which must be laid in water. - Visible eardrums 42 Vertebrates: five classes Reptiles - Body consists of a head, thorax and an abdomen with two pairs of limbs. - Dry, scales for skin - Leathery eggs - sunken eardrums, visible only as a hole on the surface Birds - Body consist of head, thorax∕abdomen, and tail. Feathers, beaks are key features for them Wings for flying Scales on legs only Holes leading to eardrums Hard shelled eggs made with calcium carbonate. streamlined shape Mammals - Body consists of a head, thorax and an abdomen with two pairs of limbs. - hair ∕ fur covering skin, including whiskers Live birth with young fed on milk from mammary glands Eardrums with ear pinnae to funnel sound better. - 43 Using the above information about Vertebrates construct a key to classify the following RememberUse a pencil Base your key on visible external characteristics If you are unsure about the organisms, look them up Why don’t you print out some pictures of the species to help you? Glue them in. When you are finished, give the key to your friend and see if they can make sense of it Panda Cobra Whale Salamander Kestrel Owl Iguana Shark Barracuda Bullfrog 44 Invertebrates (collective name only) ❖ All invertebrates have no backbone. ❖ Their soft bodies may be without covering, or with either hard shells or waxy exoskeletons. ❖ Their bodies consist usually of a head, thorax and abdomen. ❖ Limbs may range in number from zero pairs in molluscs to 3 pairs in insects to 4 pairs in arachnids to 5 or more pairs in both crustaceans and myriapods. Of all the numbers of different phyla (which is the plural of phylum) in the invertebrates we only need to learn about 1! Thank you Cambridge. The reason is that it would take approximately 46.7 years to learn them all, so don’t moan about learning these ones, remember....46.7 years.... The phylum arthropods is characterised by: - three body parts - exoskeleton - jointed limbs which is the meaning of arthropods We will look at four of the classes of arthropods only. Insects - Body in 3 parts: head, thorax and abdomen - Waxy exoskeleton made of chitin - 3 pairs of limbs - 1 pair of compound eyes - 1 pair of antennae - Wings (1 or 2 pairs) 45 Arachnids - Body in 2 parts: head/thorax called encephalothorax, and abdomen - Waxy exoskeleton made of chitin - 4 pairs of limbs - 4 pairs of simple eyes - No wings or antennae 46 Phylum Arthropods: 4 classes Crustaceans - Body in 2 parts: encephalothorax, and abdomen - Chalky exoskeleton made of calcium carbonate - 5 or more pairs of limbs - 1 pair of compound eyes and may be on stalks - 2 pairs of antennae - No wings Myriapods - Body in many segments begins with a head. - Waxy exoskeleton - Each segment may have 1 or 2 pairs of limbs - 1 pair of simple eyes - 1 pair of antennae - No wings - Cylindrical or flattened body 47 *Copy and complete the tables below to help you study. Animal Kingdom: Vertebrate Phylum: Classes Fish Body Limbs Covering Ears Eggs Extra Feature Scales No ears, instead have a lateral line Surrounded by soft jelly, laid in water Almost all fish live in water No proper limbs, fins instead to help with swimming and balance Amphibians Reptiles Birds Mammals Animal Kingdom: (invertebrates) Arthropod Phylum: Classes Body covering Number of body parts Number of limbs Eyes Antenna or wings Insect Arachnid Crustacean Myriapods 48 Unit 3: The movement of molecules * The random movement of particles / molecules is brought about by Kinetic Energy. There are three main types: A. Diffusion B. Osmosis C. Active Transport A. Diffusion Diffusion: is the net movement of molecules from a region of their higher concentration to a region of their lower concentration down a concentration gradient, as a result of their random movement. ❖ It’s PASSIVE and requires no added energy. Kinetic energy only. ❖ It occurs whenever there is a difference in concentration known as a concentration gradient. ❖ Diffusion can occur in solids(only rarely), liquids or gases. N.B. When dealing with liquids, remember: Solute + Solvent Solution Concentration refers to the amount of dissolved solute in a given volume of solvent. Concentrated but free moving Before Moved by Kinetic Energy until evenly distributed After 49 Factors affecting Diffusion • Temperature Increasing temperature increases heat which causes molecules to move faster so there is more kinetic energy. So the higher the temperature – the faster the rate of diffusion. • Pressure The greater the pressure, the more force is exerted on the molecules causing them to move faster. So the higher the pressure – the faster the rate of diffusion. • Distance The longer the distance, the more time it takes for the molecules to randomly move so diffusion is slower. So the shorter the distance – the faster the rate of diffusion. • Concentration Gradient The greater the difference in concentration between two regions – the faster the rate of diffusion. So the steeper the concentration gradient – the faster the rate of diffusion. • Size of the Molecule The larger the molecule, the more energy it needs to move so the longer it takes. So the smaller the molecule – the faster the rate of diffusion. • Cell Wall The thicker the wall, the longer it will take for molecules to diffuse through. So the thinner the wall – the faster the rate of diffusion. 50 Three main examples of diffusion in living things: ❖ Cells The diffusion of substances, such as glucose and oxygen, into and out of cells is done through the cell membrane, which is partially permeable. ❖ Diffusion of gases such as carbon dioxide and oxygen. In plants, the leaf is the organ of gaseous exchange through its stomata. In humans, the lungs are the organs of gaseous exchange through their alveoli. ❖ Diffusion of dissolved nutrient molecules In humans, dissolved nutrient molecules like glucose pass from the small intestine through the villi into the bloodstream. B. Osmosis Osmosis: is the diffusion of water molecules from a region of high water potential to a region of low water potential, through a partially permeable membrane. Osmosis: is the diffusion of water molecules from a region of their higher concentration (dilute solution) to a region of their lower concentration (concentrated solution), through a partially permeable membrane. Important points to remember: • concentration usually refers to dissolved solute so you must use the word `their` if you choose to write the second definition to show you mean the water concentration. • Water concentration is usually referred to as water potential and deals with the number of `free water molecules` available to move by osmosis. • All cells are surrounded by cell membranes which are partially permeable so osmosis primarily happens in living organisms. 51 Osmosis Water Starch Dilute Solution ______Water Potential Weak Solution Concentrated Solution ______Water Potential Strong Solution Solutions are the same strength *Only water diffuses cm3 cm3 1000 1000 500 500 0 0 Partially permeable membrane 5g of sugar 10g of sugar 5g of sugar 10g of sugar In this experiment a potato has been cut in half, and a well scooped out of it. The well has been filled with salt solution and the whole lot placed into a dish of distilled water. The potato on the right shows what has happened after it has been left for 30 minutes. 52 Osmosis in Cells A. Animal Cells In a Hypotonic solution (dilute or weak solution), such as water. A Red Blood Cell Water Water Water The red blood cell would gain water by osmosis as it’s more concentrated than water and would eventually burst. This is known as cell lysis. Water In a Hypertonic solution, such as a concentrated salt solution. A Red Blood Cell Water Water Water Water The red blood cell would lose water by osmosis as it’s less concentrated than the salt solution and would eventually shrivel up. It is now crennated. B. Plant Cells 1 1. Cell loses water by osmosis as it’s in a concentrated solution. First the cell loses water pressure and becomes flaccid. However if untreated, the cell membrane will pull away from the cell wall and the cell is called plasmolysed. *The tissue is wilting. 2 2. Cell gains water by osmosis as it’s in a dilute solution. The cell membrane lies next to the cell wall. The cell is only just turgid. 3 3. Cell has gained as much water as it can and is now fully turgid. The pressure of the cell walls now resists any further osmosis. Osmosis stops. *The tissue is firm and rigid. 53 Osmosis Experiments • Visking tubing is a partially permeable membrane which we use to test osmosis. • The sugar molecules are too large to pass through and so only small water molecules can move by osmosis. • The sugar and water molecules are moving randomly by kinetic energy in both the beaker and the visking tubing. • Water will move into the visking tubing due to the difference concentration, or gradient, as sugar can not get out. • This increases the hydrostatic pressure in the capillary tube so water is forced up an out of the capillary tube. a. The osmometer b. Using potato tissue – this allows us to determine the concentration inside the potato tissue and so are able to predict the concentration in its cells. 54 C. Active Transport Active Transport: is the movement of ions in or out of a cell through the cell membrane, from a region of their lower concentration to their higher concentration against a concentration gradient, using energy released from respiration. * Energy is applied which causes the protein carrier molecule to change shape allowing the ion or molecule to be released inside the cell, against its concentration gradient. Important points to remember: • Active transport is ACTIVE, it requires energy from respiration. • As the energy comes from respiration, it takes place inside living cells. Two main examples of active transport in living things: ❖ Root hair cell in plants. As important ions, such as magnesium and nitrates, are often in higher concentration inside the cells than in the soil, the root hair cell will use energy to bring them inside as they are useful. ❖ Epithelial cells of the villi lining the gut in animals. Once food is digested, the dissolved nutrients such as glucose and amino acids rapidly begin diffusing into the blood. However, once equilibrium in concentration is achieved between the lumen (the inside of a tube) of the small intestine and the blood, diffusion slows preventing useful nutrients being absorbed. To speed up diffusion through the villi into the blood stream, the epithelial cells of the villi will use energy to actively transport useful nutrients into the bloodstream. 55 Unit 4: Enzymes A catalyst speeds up a chemical reaction and is not changed by the reaction. Enzymes are considered to be biological catalysts as they are made of organic substances and speed up chemical reactions while remaining unchanged. Important Features: ❖ They are made of protein, so can be tested using the Biurets test and will turn purple. ❖ They are specific, meaning they can only speed up one chemical reaction. amylase i.e. Starch maltose catalase i.e. Hydrogen peroxide water +oxygen gas * Enzymes and catalysts are written above the arrow in a chemical reaction to indicate they are unchanged. Amylase can only work on starch, it is specific for starch. ❖ They can either join simple molecules into large ones or break down large molecules into small molecules. ❖ Joining or breaking down of molecules can occur with lower activation energy than if no enzyme was used. (*25°C to fix Nitrogen in bacteria or 750°C in the Haber process) *The substrate fits into the enzyme’s active site like a ‛ lock and key’, its shape is complementary to it. 56 Factors which affect enzyme rate of reaction: ❖ Temperature ❖ pH ❖ Enzyme concentration ❖ Substrate concentration ❖ Surface Area ❖ Temperature Fig. 4.a the effect of temperature on enzyme activity. • At low temperatures, enzyme action is reduced and the rate of reaction is slow. • An increase of 10°C doubles the rate of reaction. • Each enzyme has an optimum temperature at which it works best. In mammals it ranges from 37-40°C. • A slight increase above the optimum (up to 50°C) will slow down the rate of the reaction. • At high temperatures (above 50-60°C) the enzyme will be destroyed and will stop working. The enzyme is denatured, altering its active site permanently due to intense kinetic energy. ❖ Enzyme Concentration The more enzyme molecules there are, the more open active sites there are to act on the substrate molecules and as a result an increase in enzyme concentration – increases the rate of reaction. ❖ Substrate Concentration The more substrate molecules there are, the more likely they will ‛collide’ successfully with the enzymes’ active sites to be acted on. As a result an increase in substrate concentration - increase the rate of reaction. 57 ❖ pH • Each enzyme has its own preferred pH, the pH in which it works best is known as its optimum pH. • Fig. 4.b the effect of pH on enzyme activity For example, o Pepsin works best in acidic conditions, its optimum pH is _____2_____. o Human amylase works best in neutral conditions, its optimum pH is ___________ . o Trypsin works best in alkaline conditions, its optimum pH is _________ . ❖ Surface Area The larger the surface area, the larger the area that can be acted on by enzymes. As a result an increase in surface area - increases the rate of reaction. * This is why chewing food helps as it increases surface area for enzyme action. How do we measure enzyme rate of reaction? There are two methods: • Measure the rate substrates disappear. • Measure the rate products form. The enzyme amylase will break down the substrate starch and produce the disaccharide maltose. Now design an experiment you could do to test the effect of one of the factors that affect enzymes i.e. temperature, pH on their rate of reaction. *Remember you will need to be able to measure rate of reaction, which is equal to1/time. So you must time how long it takes for the substrates to disappear or the products to form. *Think of what you already know about how to test for starch and sugars. Write it in ten lines or less on a sheet of A4. [10] 58 Unit 5 Nutrition Nutrition: the taking in of nutrients which are organic substances and mineral ions, containing raw materials or energy for growth and tissue repair, absorbing and assimilating them. ❖ Organic substances are those that contain Carbon. i.e. sugars, proteins and fats. ❖ There are Seven Natural Food Groups that make up our diet and an eighth group of artificial foods such as additives and preservatives. The Seven Natural Food Groups are: 1. Carbohydrates 2. Lipids (Fats/Oils) These three are organic and provide the body with both energy and the building blocks of raw materials for growth and tissue repair. 3. Proteins 4. Vitamins 5. Minerals These three are necessary for the proper functioning of the body but do not provide energy. 6. Water 7. Roughage/Fibre This is not absorbed by the body but instead exercises our intestines and keeps them functioning healthily by promoting peristalsis (muscular contractions) of the gut. 8. *Additives (artificial) These are used to produce processed foods and not needed by the body. 59 The Seven Natural Food Groups 1. Carbohydrates ❖ They are made up of three elements: Carbon, Hydrogen, and Oxygen. There are three main types of Carbohydrates. a) Simple Sugars – these are the most basic units. They are only one sugar molecule in size and are known as monosaccharides. i.e. glucose fructose galactose b) Complex Sugars – these are made up of two sugar molecules and are known as disaccharides. i.e. sucrose (glucose and fructose) lactose (glucose and galactose) maltose (glucose and glucose) c) Polysaccharides – these are made up of many sugar molecules. i.e. starch (plants) cellulose (plants) glycogen (animals) • How would you draw a polysaccharide? • Did you notice any similarity between the names of the sugars? 60 The Seven Natural Food Groups 1. Carbohydrates Good Food Source Carbohydrates tend to be the staple foods in every country as they provide us with 5/7th or the majority of our diet and are needed to give us energy. A lack of carbohydrates (and protein) may cause the deficiency disease known as marasmus. The symptoms include severe wasting away of body tissues and dehydration. Potatoes, Rice, and Maize (corn) are good staple foods. Other carbohydrates include cereals (starch), fruit juices, or refined sugars such as those found in desserts, soft drinks and sweets. Function in our bodies • Simple sugars are used to release energy by respiration and the energy can then be used for active transport, cell division, and muscle contraction and to build new larger molecules. • Complex sugars are used to quickly and temporarily store energy. Disaccharides are less reactive than monosaccharides and so the cell needs less water to store them inside their cytoplasm. • Polysaccharides are used to store energy long-term. Plant cells use starch and animal cells use glycogen. Also polysaccharides can be used as structural components of the cell. For example, plants use cellulose to build their cell wall and animals use polysaccharides as antigens on their cell membrane to provide attachment and recognition by our white blood cells. 61 The Seven Natural Food Groups 2. Lipids (Fats in animals, oils in plants) ❖ They are made up of three elements: Carbon, Hydrogen, and Oxygen. ❖ They are made up of two basic sub-units of molecules: a) fatty acids b) glycerol ❖ It is the type of fatty acids that determines if it’s a fat or an oil. ▪ Saturated fatty acids are found in animal cells and contain all single bonds with carbon and hydrogen. (C-H) ▪ Unsaturated fatty acids are found in plant cells and contain some double bonds between two Carbons (C=C) as there is not enough Hydrogen atoms available. This double bond causes a bend in the fatty acid tail of the lipid molecule. * Complete the boxes below by drawing in the first box as many saturated fatty acids as you can fit and in the second draw as many unsaturated fatty acids. In which box can you fit more? Saturated fatty acids Unsaturated fatty acids 62 The Seven Natural Food Groups 2. Lipids (Fats in animals, oils in plants) Good Food Source Lipids need only make up 1/7th of our diets but are important as they provide energy and the raw materials to build new larger molecules. A lack of lipids may contribute to the deficiency disease marasmus and weight loss. Red meat and dairy products contain animal fat which contains cholesterol a “sticky fat” which forms a lining (plaque) inside the lumen of the blood vessels, making the blood vessels narrower and can lead to heart disease and obesity. Margarine and cooking oils contain plant or vegetable oil. Fish oils are also needed as they contain omega oils which are important for brain function. Functions in our bodies • To build cell membranes by a making phospholipids. • To store energy as it contains twice the energy (34KJ/g) as either carbohydrates or proteins (17KJ/g). • To insulate as fat deposits under the skin (adipose tissue), for example as blubber in whales and polar bears. It is also used to insulate nerves so that their electrical messages travel faster. • For buoyancy; whales use it so that they can float. • To make hormones such as oestrogen and testosterone 63 The Seven Natural Food Groups 3. Proteins ❖ They are made up of four elements: Carbon, Hydrogen, Oxygen and Nitrogen. ❖ They are molecules made up of many units (polymers) of amino acids. There are 20 commonly occurring amino acids. ❖ Two amino acids join together to form a dipeptide bond by removing water and is known as a condensation reaction. When many amino acids join together they are called polypeptides. ❖ Proteins may be made up one chain of amino acids or polypeptides or may be made up of many polypeptide chains. These are the basic units or amino acids. When two amino acids join, a dipeptide forms. When many amino acids join, a polypeptide forms. Finally, a protein is made either from one polypeptide chain or many. *Remember it is DNA that codes for what sequence of amino acids is joined together and how so any mutation to the DNA may alter what protein is coded for. 64 The Seven Natural Food Groups 3. Proteins Good Food Source Proteins need only make up 1/7th of our diet but are important as they provide energy and the raw materials needed for tissue growth and repair. A lack of protein may cause the deficiency disease known as kwashiorkor. The symptoms include cracked lips, a swollen belly and possibly liver and brain damage. Also lack of essential amino acids can cause marasmus. Lean meats such as fish and chicken are good animal sources whereas eggs and red meats such as beef have high levels of cholesterol which is a saturated fat that lines the blood vessels causing high blood pressure. Other sources of protein include peas, beans, milk and cheese. Functions in our bodies • To form protein carriers in the cell membrane. • Hormones i.e. insulin • Enzymes i.e. amylase • Haemoglobin in red blood cells • Antibodies produced by white blood cells • Muscle cells • Hair, and nails • Used for respiration energy when carbohydrates are low. 65 The Seven Natural Food Groups *A recap of the first three, which are used for energy and to provide us and all living organisms with the building blocks of life as raw organic materials. Carbohydrates Lipids Proteins What elements are they made of? What is their main use? What are their monomers (basic single units) called? Give examples Draw their basic structure. 66 The Seven Natural Food Groups * The next three are needed for the healthy functioning of the body and its cells. 4. Vitamins 5. Minerals 6. Water 4. Vitamins – are a group of organic molecules that vary widely in their chemical structure. The features they share include: • • • • Not digested for energy. Essential is small quantities for normal health. Needed for chemical reactions in our cells. Not built into the body cells. Nutrient Vitamin C • denatures when cooking • watersoluble so cannot be stored and is excreted Vitamin D Food Sources Citrus fruits, green vegetables, kiwis and tomatoes. Liver, oily fish, dairy • fat-soluble products and margarine. It and so is stored in the is also made by the skin in body. sunlight. Functions in Our Body Deficiency Disease Production of connective tissue such as collagen fibres in skin. To help us absorb iron. Scurvy – symptoms include bleeding gums, wounds fail to heal. Connective tissue fibres fail to form. Anaemia. Heart Failure. Calcium absorption and storage. To build bones and teeth. Rickets – symptoms include weak bones which bend under the weight of the person and hearing problems. 67 The Seven Natural Food Groups 5. Minerals – these are inorganic mineral ions. There are four important mineral ions for healthy nutrition of plants and animals. Nutrient Food Sources Functions in Our Body Deficiency Disease Calcium • Needed for animals • Stored in bones Dairy products, sardines, watercress, bread and cabbage For healthy bones and teeth, nerve function, blood clotting and muscle contraction. Ricketts – bones become soft and weak. Iron • Liver, kidneys, red meat, To form haemoglobin, spinach and egg yolks. which carries oxygen in red blood cells. Important for healthy muscles. Anaemia blood doesn’t hold enough oxygen so cells can’t respire and soon the person becomes tired and short of breath. • Needed for animals Stored in liver Nitrogen Protein such as red meat, chicken, fish and • Needed by both plants too. animals and plants. • As the gas it is unreactive. First bacteria convert it to ammonia, then to nitrites/nitrates so both plants and then animals can use it. To form amino acids needed to build protein. Proteins are needed for growth and tissue repair. Kwashiorkor – lack of essential amino acids and so tissue are unable to grow or repair themselves in animals. May lead to long term brain damage in humans. Magnesium • Needed by plants more. To form chlorophyll, the green pigment found in plant cell chloroplasts which absorb sunlight to make sugars in photosynthesis. Plants without chlorophyll die as they can’t carry out photosynthesis to gain energy. Plants obtain it from the soil water that surrounds their roots and will use energy in active transport to absorb it as it’s essential. 68 The Seven Natural Food Groups 6. Water – this is considered to be one of the most important molecules as it allows life to happen. This is why it is one of the first molecules we look for when we explore space and the planets. It is not used to produce energy but is important for the healthy functioning of an organism. A lack of water in an organism can lead to dehydration. As most living organisms are made up of water, humans up to 70%, we call this weight the Fresh Mass. However, the amount of water in an organism varies greatly from one organism to another. It also varies depending on time of day, season, and temperature of their environment, among other factors. As the amount of water in organisms varies, biologists often find the fresh mass to be a misleading measurement and so prefer to use dry mass. Dry mass is the weight of an organism after it has been killed and dried. It is a measurement that is used in ecology, which is the study of how organisms interact with each other and their environment. Good Food Source Water is found in drinking water, drinks, fruits and vegetables. Functions in living organisms All living cells contain cytoplasm which is largely water. The cytoplasm is the site of all chemical reactions that provide energy (metabolism) and is where larger molecules are built up for growth and tissue repair by assimilation. In multicellular animals like plants and animals, water allows for transport of nutrients, gaseous exchange with the environment and heat loss. 69 The Seven Natural Food Groups 7. Roughage/Fibre – Important for multicellular animals only. Fibre is made up of non-digestible plant material such as cellulose found in plant cell walls and lignin found in xylem vessels. We are unable to digest them due to a lack of the necessary enzymes to break them down and make them soluble enough for absorption into our bloodstream. *Note bacteria do produce cellulase the enzyme needed to break down cellulose in plant cell walls and so are often found inside the guts of herbivores i.e. cows to eat grass and insects i.e. termites to eat wood. Good Food Sources They are found in foods such as fruits, vegetables, wholegrain breads, rice and cereals. Functions in the body Insoluble fibre ‘exercises’ the gut muscles by promoting peristalsis (muscular contraction) of the intestines, especially of the large intestine. This ensures that faeces (waste are egested through the anus) do not remain too long in the large intestines, as faeces is full of toxins, which irritate the lining of the large intestine and can lead to bowel cancer. Also fibre allows water to be held in the faeces and so prevents constipation. Soluble fibre (the kind you get in porridge oats) can help by helping to control the cholesterol (‘sticky fat’) levels by binding with it in the small intestine and preventing the cholesterol from being absorbed. Bacteria in the large intestine are able to metabolise the fibre which releases a chemical into the bloodstream reducing plaques (fat deposits lining blood vessels which can lead to heart disease). This chemical also reduces blood clots. 70 The 6 Food Tests and the Energy Test in Food Content ❖ There are several different experiments food scientists conduct to determine what is in food (such as proteins, fats and carbohydrates) and to determine how much energy is in a food so that they are able to produce nutritional food labels on packaged foods. ❖ Most food tests need to be conducted with the solid food made into a solution. ▪ First grind one gram of the sample food with a pestle and mortar. ▪ Then add 5 cm3of water to ground sample and mix. ▪ Then filter the solution to remove any non-dissolved pieces of food. ▪ Finally use 1 cm3 of sample solution to conduct food tests. 71 The 6 Food Tests and the Energy Test in Food Content Do yourself a favour and learn these, you can rely on these coming up on IGCSE papers. They are as follows: • Iodine Test to test for starch, a polysaccharide. • Benedict’s Test to test for carbohydrate sugars known as reducing sugars. (sucrose is not a reducing sugar and so must be broken down first.) • Emulsion Test to test for fats/oils in solution. • Filter Paper Test to test for fats/oils in a solid. • Biurets Test to test for proteins. • DCPIP Test to test for Vitamin C. • Energy Combustion Test or Bomb Calorimeter to test for the amount of energy in 1g of food. Iodine Test (To Test for Starch) Add one to two drops of iodine solution (potassium iodide solution) to the sample. If the result is negative the orange/brown colour of the iodine solution stays the same. If the result is positive the colour changes to blue/black indicating that starch is found in the sample. Negative Starch absent Positive Starch present * Colour in the test tubes to show the colours that would be seen by these results. 72 The 6 Food Tests and the Energy Test in Food Content Benedict’s Test (To Test for Reducing Sugars) • Add excess Benedict’s solution 2cm3 to 1cm3 of sample solution. • Then add heat at 100°C in a hot water bath and observe colour change. ❖ It is important to use a hot water bath to avoid ‘spitting’ and safety goggles should be worn. • If the result is negative the light blue colour of the Benedict’s solution stays the same. • If the result is positive the colour will change from BLUE BLUE BRICK RED PRECIPITATE GREEN YELLOW ORANGE (1 mark answer) BRICK RED PRECIPITATE (2 mark answer) A precipitate is an insoluble solid that comes out of solution due to a chemical reaction when two liquids are mixed. A colour change indicates the presence of a reducing sugar. *Sucrose, a disaccharide, is not a reducing sugar so must be either broken down using the enzyme sucrase or hydrolysed using an acid and heat followed by an alkaline to neutralise it. (not on syllabus) 73 The 6 Food Tests and the Energy Test in Food Content Emulsion Test (To Test for Lipids such as Fats/Oils) • Add 4 cm3 of Ethanol to 1cm3 of sample solution. • Then add 3-4 drops of distilled water. • If the result is negative, the colourless solution stays the same. • If the result is positive, the colourless solution changes colour to a cloudy white emulsion which is best viewed against black card. * An emulsion is a mixture formed when two normally immiscible liquids such as water and oil are shaken together. Filter Paper Test (To Test for Lipids in solids) • Rub the solid food against the filter paper. • If the result is negative, the filter paper’s white colour will stay the same. • If the result is positive, the filter paper’s white colour will change to a clear, translucent colour which is best viewed towards a light. 74 The 6 Food Tests and the Energy Test in Food Content Biurets Test (To Test for Protein) There are two methods: a) Simple method – • Add 1 cm3 Biurets solution to 1 cm3 of sample solution. (Equal amounts) • If the result is negative then the colour stays blue. • If the result is positive then the colour changes to mauve/purple indicating that protein is found. b) Detailed method – • Add 1 cm3 of sodium hydroxide to 1 cm3 of sample solution. (Equal amounts) • Mix gently by tapping the base of test tube with your finger. • Then add 3- 4 drops of copper (II) sulphate. • If the result is negative then the colour stays blue. • If the result is positive then the colour changes to mauve/purple indicating that protein is found. Negative Protein absent Positive Protein present * Colour in the test tubes to show the colours that would be seen by these results. 75 The 6 Food Tests and the Energy Test in Food Content DCPIP Test (To Test for Vitamin C) *DCPIP is normally blue in colour but it will turn colourless when Vitamin C is present. • Add 1ml of DCPIP to a test tube. • Fill a syringe with your sample solution and slowly drop by drop, release it into the DCPIP filled test tube. • Record the number of drops it takes to decolourise the DCPIP. *The fewer drops needed to decolourise it the higher the Vitamin C content of the sample solution. Energy Combustion Test (To Test for the amount of energy) ▪ Fill a test tube with 20 cm3 of water and attach to clamp stand. ▪ Record temperature of water using a thermometer. ▪ Weigh food sample in grams. ▪ Attach food sample to mounted needle. ▪ Set the food sample alight or burn it. ▪ Place lit food sample under test tube and allow radiant heat from burning food sample to heat the water. ▪ Once sample is completely burnt, record the final temperature of the water. * Use the temperature increase to determine the amount of energy released from the sample food. *Remember when using a thermometer not to touch the sides of the test tube as it will measure the temperature of the glass test tube not the contents of the tube. 76 The 6 Food Tests and the Energy Test in Food Content Energy Combustion Test (To Test for the amount of energy) How to calculate energy produced Once the temperature increase has been recorded you can use the equation below to determine the amount of energy in 1g of a food sample. Energy (joules) = mass of water (grams) X specific heat capacity of water X temperature increase (Celsius) Energy (J) = mass of water (g) X 4.2 J°C/g X temperature increase (°C) *1g of water =1ml of water Therefore the amount of energy in a given mass of food is calculated as: Energy content (joules/g) = Energy released as calculated above (J) Mass of sample food (g) 77 Nutrition: The process of taking in nutrients which are organic substances and mineral ions, containing raw materials or energy for growth and tissue repair, absorbing and assimilating them. In other words we need to take in the 7 basic food groups to obtain energy or building blocks of life for growth and tissue repair. But how much of each do we need to get the correct balance? A balanced diet consists of the seven basic food groups, such as carbohydrates, lipids, and proteins in the correct proportions. Guidelines: Balance Calories • Enjoy your food, but eat less. • Avoid oversized portions. Foods to Increase • Make half your plate fruits and vegetables. • Switch to fat-free or low-fat (1%) milk. • Make at least half your grains whole grains Foods to Reduce • Compare sodium (salt) in foods like soup, bread and frozen meals, and choose foods with lower numbers. • Drink water instead of sugary drinks. Carbohydrates, and lipids provide our bodies with energy, whereas proteins are mostly used to provide raw materials for growth. Vitamins, minerals, water and roughage are needed for the healthy functioning of our bodies. *Refer to table on the following page for more details. 78 Constituent Source Importance Carbohydrates Potatoes, beans and Starch peas, yams, cereals Honey, fruit, and candy Sugars Carbohydrates which are broken down by digestion so they can release energy in cells by respiration. Lipids Red meat, dairy products, nuts, and egg yolk Lipids contain more energy than carbohydrates (2x). It’s stored in the skin and around kidneys. Proteins Meat, peas and beans, fish, nuts Proteins are used for growth and repair. Muscle is largely protein. Citrus fruit, cabbage, kiwi Healthy gums and skin repair. Fish liver oil, potato, egg yolk, skin able to make it in the sun. To absorb calcium and deposit ions to build strong teeth and bone growth. Milk and dairy products, flour For healthy bones and teeth, for muscle action and blood clotting. Liver, red meat, spinach For haemoglobin in red blood cells, needed to carry oxygen. Vitamins C (ascorbic acid) D (calciferol) Minerals Calcium Iron Fibre Fruit, nuts vegetables, Forms bulk in the intestines. This exercises the gut muscles used for peristalsis by giving them something to push against and prevents constipation. This lowers risk of bowel cancer. Soluble fibre reduces absorption of fats, especially cholesterol. Water Drinks, and all food Water is the solvent in our body. It is the medium of all chemical reactions. We are 68% water. 79 A Balanced Diet A balanced diet includes eating a variety of foods from the seven food groups in the correct proportions so as to gain energy and the raw materials needed for growth and tissue repair. i.e. carbohydrates 5/7th,fats 1/7th, and protein 1/7th The energy needed by a person depends on three main factors: A. Gender – males generally need more energy than females as they have more muscles and tend to be more active. B. Age – energy consumption increases during our early years of life to our twenties as we are undergoing growth and development during this time. It then stabilises during our 30’s60’s and will eventually decrease after our 70’s. C. Activity Levels/Lifestyle/Occupation – the more physically active you are, the more energy you will need to consume. Nutrients are needed to provide your muscles with energy from respiration. Recommended daily energy intakes for different people Type of person New born baby Child 1 year Child 2-3 Child 5-7 Girl 12-15 Boy 12-15 KJ per day 2000 3000 6000 7500 9500 12000 Type of person Girl 16-18 Boy 16-18 Office worker Factory worker Manual worker Pregnant woman KJ per day 12000 15000 11000 12000 15000 10000 80 Nutrition and Energy needs However, the amount of nutrients/ energy needed by a person is affected by several factors: • Age • Activities • Sex/Gender Using the graph below, write two simple rules for how these two factors affect nutrient energy requirement. • Age – • Activity level - A balance diet is also affected by the gender of the individual. Men have more muscles than women. Referring to the table below how does this effect their energy requirements? • Gender - 81 Malnutrition A balanced diet is all about eating the right amounts of the right nutrients. Unfortunately, that balance is not always easy to achieve and malnutrition can result. Malnutrition (‘bad feeding’) is when a person’s diet either is deficient or has excess of need. Malnutrition can result from: • Eating too much of all foods. (excess) This can lead to weight gain and eventually obesity (an obese person’s fat storage is over the healthy limit). This is often called overnutrition and is a becoming a health issue in developing countries as obesity is associated with diabetes, heart disease, breathing difficulties, and arthritis. • Eating too little food. This will result in weight loss but if certain nutrients are not provided can result in a deficiency disease or undernutrition. A deficiency disease develops when one of the seven food groups is lacking and can be remedied usually once the food is provided. (*You studied 4 deficiency diseases) Undernutrition is a health issue in the developing world, where drought conditions have led to poor harvests or where people have left their homes due to civil war. The two most extreme conditions are kwashiorkor (a lack of essential amino acids leading to slow mental and physical development in young children) and marasmus (caused by starvation where the child is simply not given enough energy foods and so body tissues waste away). 82 Unit 6: Plant Nutrition Plants are autotrophic (self-feeding) which means they are able to take simple substances from their environment and use light energy to build them up into complex food compounds. The diagram below gives a quick overview of the simple substances plants need to build more complex compounds for energy and growth. Plants are able to use the Sun’s light energy to fuse carbon dioxide and water to make glucose (sugar) and releasing oxygen in the process of photosynthesis. This sugar can be used to provide energy by respiration, or it can be stored as lipids. However, mineral ions need to be absorbed from the soil to make proteins, and nucleic acids for growth and repair. 83 Plant Structure lamina (surface of the leaf) Midrib or vein enters leaf via stoma Vascular bundle made of xylem and phloem xylem phloem spongy mesophyll cells lower epidermis guard cell ▪ The leaf is the main photosynthesising organ of the plant and it is where sugar is produced. ▪ The roots (with the help of root hair cells) absorb water and mineral ions which are transported up the plant stem in the xylem vessels to leaves by transpiration stream. Water is used in photosynthesis and the mineral ions are used to build large complex substances for growth and repair. ▪ The phloem delivers these substances (e.g. sucrose, amino acids) to the rest of plant and is found in the throughout the stem and the root. 84 Leaf Structure Structure waxy cuticle Function This layer prevents water loss. upper epidermis These cells contain no chloroplasts so light can easily pass through as it’s transparent. palisade (mesophyll) cells Palisade cells are the main photosynthesising cells in a plant. They contain many chloroplasts filled with chlorophyll, a green pigment used to capture sunlight. spongy (mesophyll) cells Irregular shape creates air spaces in the leaf which allows gaseous exchange and movement of water by transpiration. They also contain chloroplasts for photosynthesis. lower epidermis Most cells in this layer contain no chloroplasts except the guard cells. guard cells stoma(ta) Two guard cells surround a pore called a stoma. During the day, guard cells bend when full of water causing the stoma to open. At night, they lose water causing them to deflate and so close the stoma. Through these holes in the leaf gaseous exchange and water movement by transpiration occurs. 85 Leaves are the main photosynthesising organ and they are adapted (well suited) to their function. ❖ Two main purposes of the leaves are to absorb carbon dioxide and sunlight for photosynthesis. Adaptations for CO2 and sunlight absorption: • Leaves have large laminas. Their flat, broad shape provides a large surface area for absorption of light and carbon dioxide. • They are thin and flat to reduce diffusion distances of carbon dioxide and to allow light to penetrate easily. • Thin epidermal cells with no chloroplasts allows light to pass through to palisade cells. • Air spaces created by spongy mesophyll cells allow diffusion of carbon dioxide within the leaf. • The chloroplasts are moveable to maximise available light. • Many stomata to allow entry of carbon dioxide into leaf. • The vascular bundle in the midrib provides support for the leaf so that it maximises its exposure to the sun. • Leaves are arranged to prevent shading of one another to allow the most light to be captured by the plant. 86 Photosynthesis ❖ It is the process where plants using chlorophyll in their leaves are able to absorb the Sun’s light energy to fuse carbon dioxide (from air) and water (from roots) (glucose). They also release oxygen as a waste product. to form sugar So photosynthesis can be written as a word equation as follows: carbon dioxide + water Sunlight glucose + oxygen chlorophyll ❖ However, you must also learn the chemical equation. Sunlight 6CO2 + 6H2O C6H12O6 + 6O2 Chlorophyll Chlorophyll converts light energy into chemical energy and so is called an energy transducer. The chemical energy is initially incorporated as glucose which can be used for respiration by the plants’ cells to provide energy or to build new substances. Glucose can be converted to ▪ ▪ ▪ ▪ starch for storage. cellulose for building cell walls sucrose for transport in the phloem cells. amino acids for protein synthesis with nitrate ions from the soil. Magnesium ions from soil are needed to build the chlorophyll protein complex. N.B This means you must know 4 mineral ions for healthy nutrition. • Iron and calcium for humans. • Nitrates and magnesium for plants. Do you remember what each is for? 87 Photosynthesis Experiments How do we know that the following are needed for photosynthesis to occur? • • • • Chlorophyll Carbon dioxide Light Water We learn this the way all scientists learn things, by conducting experiments. ❖ The first ever experiment to show that plants were able to convert light energy into chemical energy was by placing a plant of a known mass on a scale for a year. This original mass included the pot and the soil it was grown in. The only nutrient provided was water. Its mass increased so it was deduced that it must have been gaining energy from the sun. Next scientists wanted to prove that plants were using sunlight to make sugar. i.e. photosynthesising. ❖ First, they had to assume that if plants produced a lot of glucose from photosynthesis, they would have to convert it to starch otherwise too much water would be drawn into their cells by osmosis. ❖ Also, iodine solution can be used to test for the presence of starch. If it turns from orange/brown to blue/black then starch is present. ❖ They then had to destarch a plant by simply placing it in a dark cupboard for at least 24 hours. This forces the plant to use its stored starch for food as it is unable to photosynthesise. ❖ Finally, they placed their plant in the sunlight and after a day they removed several leaves to test for starch to see if glucose was produced using light in the process of photosynthesis. 88 Testing a leaf for starch 1) Dip a leaf in a boiling water bath for 1 minute • This kills the leaf and makes it more permeable 2) Turn off bunsen burner. • Ethanol is flammable and will be used next. Goggles must be worn. 3) Place leaf in a test tube filled with ethanol and stand in a hot water bath for 10 minutes. • The ethanol breaks down cell and organelle membranes and so releases chlorophyll, which can be dissolved in alcohol. 4) Remove leaf and rinse in cold water. • The ethanol makes the leaf brittle and so must be washed away to make leaf supple so it can be spread out. 5) Spread leaf on white cutting tile and cover with iodine solution. • If leaf turns blue/black starch is found, but if it remains orange/brown no starch is present. N.B. There are several other methods to test for rate (1/time) of photosynthesis, such as: • change in mass or height in a given time. • increase in leaves or surface area in a given time. • oxygen production in water plants in a given time. 89 Chlorophyll Experiment ❖ A variegated leaf is used. Variegated leaves have both green (containing chlorophyll) and white (not containing chlorophyll) parts in its surface. Geraniums are a good example. 1) Detach a variegated leaf from a plant that has been in sunlight. 2) Trace around the leaf onto graph paper, and label your diagram indicating where green and white parts are found. No shading. 3) Test the leaf for starch and show which parts turned blue/black and which parts stayed the same. Example Results Before After white green Label the above diagram to show what colour you think they will be after testing with iodine solution. 90 Carbon Dioxide Experiment 1) Destarch two plants of equal mass, height and with leaves of equal number and size. 2) Place one potted plant in a polythene (plastic) bag with soda lime to absorb CO2 from air. 3) Place the other potted plant in a polythene bag with sodium hydrogen carbonate which releases CO2. *This will be used as the control to show if there is any differences between the plant with carbon dioxide and the plant without it. 4) Place both plants in light for several hours. 5) Remove a leaf from each plant and test for starch. So remember when designing experiments testing the effect of CO2 on photosynthesis, you can use: • Sodium hydrogen carbonate to release CO2 • Soda lime or bicarbonate to absorb CO2 91 Light Experiment 1) Destarch a plant. 2) Cut out a simple letter or design on a piece of black card and attach it to the leaf. 3) Place plant in light for several hours. 4) Remove black card and test leaf for starch. * Only those parts which received sunlight will have produced starch and so turn blue/black. 92 Water Experiment 1) Take two potted plants of equal size or mass. 2) One plant is provided with water daily, the other is not. 3) After a week’s time, observe plants. Plant A with water Plant B with no water Plant A will still be strong and upright, as its cells are full with water and are turgid. The water fills the plant cell walls (forming a hydrostatic skeleton), their cytoplasm and their vacuoles so the whole plant becomes rigid. Plant B will be limp and the leaves will have become wilted, as its cells lose water pressure and become flaccid. *If left long enough without water, the plant will die. * This experiment is not on syllabus for photosynthesis but is useful when thinking about osmosis. 93 What mineral ions are needed by the plant? Water Culture Experiment 1) Set up several plants like diagram. 2) One plant is given all the necessary nutrients, the others will have all but one mineral ion removed. For example, the nutrient solutions may lack magnesium or nitrate ions. ❖ Magnesium is needed to build the chlorophyll protein complex so a plant grown without it will begin producing yellow leaves and have poor growth due to its inability to photosynthesise. ❖ Nitrate ions are needed to convert glucose to amino acids and so produce proteins. A plant cannot grow without proteins and so its growth will be stunted. Draw the results you would expect to see in the table below. Plant grown in complete nutrient solution. Plant grown in Plant grown in nutrient solution nutrient solution lacking magnesium. lacking nitrate ions. 94 Is oxygen released during photosynthesis? Oxygen Experiment 1) Use a water plant and set up apparatus as shown. 2) Place apparatus in light and collect gas released in an inverted measuring cylinder to determine volume. *Use a gas syringe to measure volume if accuracy is important. 3) Use a glowing splint to test the gas collected for the presence of oxygen. It will relight if oxygen is found. 95 Rate of photosynthesis and limiting factors A limiting factor is a something found in the environment that when in short supply limits the rate of a process when all other factors are in excess. Good examples of processes that can be limited are photosynthesis, respiration and enzyme reactions. The rate of photosynthesis is affected or can be limited by these main factors: • Carbon dioxide • Light • Temperature Carbon Dioxide *Globally, it is a constant limiting factor despite time of day or year. In summer/midday in most parts of the world carbon dioxide is a constant at 0.04% of atmospheric air. However, the major limiting factor in winter or dawn/dusk is temperature or light. The graph show the daily changes in CO2 one metre above a plant crop. Why do you think CO2 drops at midday? What process is using it up? Why do you think levels of CO2 are high at 4am? 96 Carbon dioxide Experiment 1: To show how increasing carbon dioxide affects the rate of photosynthesis. Rate of photosyn thesis A B CO2 Concentration A – shows that as CO2 concentration increases, so does the rate of photosynthesis which tells us it was a limiting factor. B – shows that with increased CO2 concentration, there is no further increase in the rate of photosynthesis so something else must now be the limiting factor. Experiment 2: To show the effects of different concentrations of CO2 on the rate of photosynthesis. Rate of photosyn thesis A – high CO2 concentration. B – low CO2 concentration. Time At B, the rate of photosynthesis increases to its maximum level. However, at A it can be seen that once CO2 was increased, the rate of photosynthesis increases to a new maximum rate. This indicates that although it was a limiting factor, it is not the only limiting factor. 97 Light Light conditions depend on several aspects: ▪ Time of day – light tends to be a limiting factor in the morning and evening but not midday. ▪ Latitude - more light is spread over the equator than the poles. ▪ Season – less light in autumn/winter; more light in spring/summer. ▪ Wavelength (colour) – Red and violet are best, and green is the worst. Rate of photosyn thesis A B Using the graph, write one sentence for what is occurring at A and B and what may be the limiting factor in each? A ____________________________ ____________________________ ____________________________ ____ Light intensity B ____________________________ ____________________________ ____________________________ ____ 98 Temperature Temperature can be a limiting factor. At lower temperatures (low thermal energy), the lower the kinetic energy and so the rate of reaction slows. Also, at high temperatures, the kinetic energy becomes so high the chemical bonds joining molecules together break down. When enzymes break apart they are said to be denatured and are unable to catalyse reactions. All chemical reactions inside cells and living things are controlled by enzymes and so directly limit them. However, at optimum temperatures the rate of reaction is at its maximum. Rate of photosyn thesis Both plants and animals use enzymes to control their chemical reactions, but animals are more metabolically active as they need more energy for movement. Human body temperature is 37°C which is slightly below optimum temperature for reactions but still allows reactions to work at reasonably quick rate. Temperature (°C) Plants tend to work best at lower temperatures and their optimum temperature tends to be closer to 20-25°C. 99 Stomata Number Stomata are pores that are usually found on the underside of the leaf that control gaseous exchange (carbon dioxide in and oxygen out) and water movement by transpiration. The effect of stomata is fixed per species of plant, as the number and distribution on a leaf will always be roughly the same and so affect the rate of photosynthesis and gaseous exchange in the same way. However, it can be used when comparing two different species of plant to see if they photosynthesise at different rates due to different number of stomata. Stomata are controlled by the two guard cells surrounding them. Opening Closing Open during the day. Closed at night. Starch Glucose glucose starch This lowers the water potential in the guard cells. This raises the water potential of the guard cells. Water is drawn in by osmosis and the cells become TURGID. Water moves out by osmosis and the cells become FLACCID. Their guard cells walls are thickest on the inside and so bend creating the opening. The guard cells deflate and so cause the pore to close. 100 Greenhouses Greenhouses are used to control limiting factors so that optimal growth can be achieved and therefore yield can be increased. How are conditions controlled to improve yield (amount of crop produced): ❖ Temperature • Sunlight heats up the inside of the glasshouse and the glass stops a lot of this heat from escaping. • Electric or methane burners* can be used in cold weather. (*methane burners also release carbon dioxide) • Ventilator flaps can be opened to cool greenhouses if its gets too hot. Or to allow exchange of gases. ❖ Light • The glass lets light in. • Artificial lighting can be used to grow plants when light gets too low. • Blinds can be used for shade when light gets too strong and could damage chlorophyll in the leaves. ❖ Carbon dioxide • Growers can pump carbon dioxide into greenhouses to increase rate of photosynthesis. • Methane burners can used to add carbon dioxide and heat. ❖ Water • Many greenhouses have automatic watering systems. • When needed, sprinklers and humidifiers come on. Due to the expense, normally only cash crops are grown with a good financial return, such as tomatoes, or spring flowers. 101 Unit 7: Animal Nutrition Animal nutrition begins with the process of digestion. Nutrition: The process of taking in nutrients which are organic substances and mineral ions, containing raw materials or energy for growth and tissue repair, absorbing and assimilating them. Digestion is the process that breaks down large, insoluble molecules into small, soluble molecules by chemical or mechanical means. Once the raw materials have been broken down into small, soluble molecules they can be absorbed into the blood or lymph and finally used for energy or assimilated into new tissue for growth or repair. There are five main stages to nutrition: 1) Ingestion – the process of taking food substances into the body through the mouth. 2) Digestion – the process of breaking large, insoluble molecules into small, soluble molecules by chemical (i.e. enzymes) or mechanical (i.e. muscle action) means. 3) Absorption – the process of small, soluble molecules moving into the blood or lymph from the small intestine. 4) Assimilation – the process of using the small, soluble molecules to produce energy by respiration or to be used as raw materials for growth and repair. 5) Egestion – the process of removing any undigested materials and waste from the body through the anus. 102 Here’s a diagram of the human alimentary canal. 1 2 5 As you go through the main stages of nutrition, write the corresponding number next to the place it occurs. *The first and last one have been done for you. 103 Stages of Nutrition 1) Ingestion – begins by the taking in food in the mouth. 2) Digestion – also begins in the mouth by both mechanical and chemical means. Mechanical digestion is carried out by the teeth and chemical digestion is carried out by saliva (mucus, water, and the enzyme amylase). Mastication or chewing has two important functions: • to reduce the sizes of the pieces to be swallowed • to increase surface area of the food for enzyme action. Fig. Shows the lateral view of the human teeth and jaws. Humans have two sets of teeth during their lifetime: a) Milk teeth –appear around one and last to six years of age. b) Permanent teeth – replace milk teeth and normally finish growing by age 26. 104 There are four main types of adult teeth: Incisors – Four in the front of each jaw. They are chisel-shaped and have sharp edges. They are used for cutting and biting. Canines – Two in each jaw. They are long and pointed. Their function used be tearing meat but they are now used for cutting and biting. to Pre-molars – Four at the side of each jaw. They have flat crowns with two blunt cusps. They are used for crushing and grinding. Molars – Six at the back of each jaw. They are the largest teeth and have four or more cusps in their crown or surface. They are used for crushing and grinding. Human teeth represent omnivores, animals that consume both plant and animal material. Animal dentition or teeth tell scientists a lot about the type of consumer an animal is. Look at the examples of a carnivore and herbivore’s teeth. • Large dagger like incisor and canine teeth, used for holding onto prey, as well as ripping/tearing flesh. • Large, heavily cusped premolars/ molars for grinding bone. One pair may be adapted into carnassial teeth, used for slicing flesh off bones. • Chisel-like incisors for cutting or pulling off vegetation. • Diastema may be present - a space to store food due to long periods of chewing • Premolars/molars are heavily ridged large surfaces for grinding up tough vegetable matter. Grinding sharpens them. • Canines are usually absent or small. 105 The structure of the tooth The tooth is composed of three layers: Enamel – is the hard outer layer. It is the hardest substance in the body and its strength comes from the mineral salt calcium. Dentine – is the middle layer. It is also very hard and resembles bone in composition. Pulp cavity – is the inside layer. It contains soft connective tissue, blood vessels and nerves. The blood vessels supply nutrients such as glucose and oxygen for respiration. (Teeth are alive.) The nerves allow messages to be sent to the brain if the tooth is hurting. *If teeth are not properly cared for then dental carries or decay may result. Plaque If you don’t clean your teeth, a mixture of food, saliva and bacteria collects at the base of the tooth, near the gums. This deposit is called plaque. The acids released by the bacteria damage the enamel of the tooth and can lead to gum disease. 106 Tartar If plaque is not removed then it hardens and forms tartar. Tartar forms a solid barrier, so bacteria anaerobically respire the sugary waste left on teeth producing lactic acid which causes tooth decay. Care of the teeth • Do not eat sweets or candies. • Eat more fibre such as apples and carrots which help to remove plaque from teeth. • Drink milk which has calcium for strengthening enamel and dentine. • Vitamin D is needed for calcium absorption and Vitamin C for healthy gums. • Brush teeth with toothpaste twice daily. • Use dental floss to clean between teeth. • Visit a dentist every six months. N.B. Toothpaste with fluoride helps to strengthen teeth enamel, kills bacteria and neutralises acid produced by bacteria. However, people prefer to have the choice of using it rather than having it added directly to their water supply. The main reasons being: Restricts freedom of choice. Can cause brown patches (mottling) on teeth. Water may taste unpleasant. In industrial areas, it may already occur in high levels. Calculating dose levels accurately is difficult. Health risks such as brittle bones and bone cancer Tooth Decay Food particles become stuck between teeth. Bacteria begin to feed on the sugary material. These bacteria are anaerobic and so respire sugar without oxygen producing lactic acid. This acid slowly dissolves away the tooth enamel. A hole or cavity is gradually formed catching even more sugary foods encouraging even more bacteria to feed and respire. Eventually, the hole becomes so large that it reaches the living part of the tooth – the pulp cavity. If left untreated it can lead to an abscess which is a painful swelling filled with pus. 107 Chemical Digestion in Mouth While the food is being chewed it is being mixed with saliva. Saliva is made of water, mucus and the enzyme amylase and is produced by the salivary gland. The water provides the ideal pH for amylase to break down starch into maltose. The mucus helps to coat the food to be swallowed down the oesophagus forming the ‘bolus’. Swallowing (oesophagus) With the help of the tongue the partially digested food is rolled up forming the bolus and is pushed to the back of the mouth for swallowing. The epiglottis closes preventing food entering the larynx (air passageways). The bolus hits the pharynx which triggers a reflex action (automatic response) moving it down the oesophagus by rhythmic muscular contractions known as peristalsis. 108 There are two sets of muscles that help with peristalsis. Before bolus After bolus Circular muscles Contract Relax Longitudinal muscles Relax Contract * These muscles work in opposition to each other and so are a good example of antagonistic pairing of muscles. N.B. there is no digestion in the oesophagus only movement to the stomach. How do we know food is moving by muscular contractions and not gravity? • We can eat upside-down or in space • Vomiting is reverse peristalsis • Most animal have a horizontal alimentary canal but still food is pushed through. 2) Digestion: Stomach Cardiac sphincter The main function of the stomach is protein digestion. *The sphincters on either side of the stomach regulate the flow of food through the stomach. Food may remain in the stomach for several hours finally leaving as a semi-liquid substance called chyme. Pyloric sphincter There are two means of digestion in the stomach: A) Mechanical Digestion – the stomach walls contract by peristalsis to churn/mix the partially digested food with stomach juices. B) Chemical Digestion – the stomach walls release gastric juice which contains: hydrochloric acid, pepsin (a protease enzyme), and mucus. 109 • Hydrochloric acid – kills any bacteria that may have entered with food in the mouth with pH2 and so the optimum pH for protein digestion is acidic. • Pepsin – a protease enzyme that breaks down large protein molecules into polypeptides. • Mucus – this lines the inside of the stomach to prevent the acid from digesting the stomach Possible stomach problems: ▪ Ulcers – where mucus lining has been worn away and gastric juice has eaten a raw patch in the stomach wall. ▪ Heartburn – cardiac sphincter does not close properly and gastric juice goes into oesophagus causing a burning sensation to the acidic pH. This is common in pregnancy as alimentary canal is pushed up into woman’s thoracic cavity to accommodate the fetus. 2) Digestion: Small Intestine Chyme (partially digested food) enters the duodenum of the small intestine. It is mixed with bile and pancreatic juice to help neutralise the acid and provide enzymes to aid with digestion. • Bile is made in the liver when red blood cells (haemoglobin) are broken down, then stored in the gall bladder and finally released into the small intestine through the bile duct. It contains sodium hydrogen carbonate which neutralises the acid pH and bile salts which emulsify fats so lipase can work on them. 110 Bile salts emulsify fats into small fat droplets. Then surround them to make them semi-soluble so lipase can act on them. lipase Fatty acids + glycerol • Pancreatic juice is made in the pancreas and is released via the pancreatic duct. It contains sodium hydrogen carbonate to further neutralise the acid and to help obtain the optimum pH of pH 7-8. It also contains enzymes for protein, fat and carbohydrate digestion, such as trypsin, lipase, and amylase. In the duodenum (top part of the small intestine), large, complex molecules are broken down into their simpler sub-units. a. Proteins trypsin Proteases* Polypeptides Amino acids *Proteases are produced by small intestine and protein digestion finishes in the ileum of the small intestine. b. amylase Carbohydrases* Polysaccharides Disaccharides Monosaccharides i.e. Starch i.e. maltose i.e. glucose *Carbohydrases such as maltase are produced by the small intestine and carbohydrate digestion finishes in the ileum. c. Lipid * lipase Fatty acids + glycerol *Lipids can only have enzymes work on them if they have been emulsified first. Lipid digestion is completed in the duodenum of the small intestine. 111 Once digestion has been completed, the simple monomers of each food group are ready to be absorbed. 3) Absorption: Small Intestine: Ileum Absorption is the movement of small, soluble food molecules and water (5-10dm3) by diffusion through the wall of the small intestine into the blood or lymph. The small intestine is well designed for its job of absorption. It is long and narrow. This increases the surface area and reduces diffusion distance for soluble nutrient molecules. But most importantly they have specialised structures known as villi. Structure of villi and how they help with absorption: Single epithelial layer of cells – short diffusion distance. Many villi – 40/mm2 they increase surface area for diffusion. Villi have microvilli on each epithelial cell - further increasing the surface area for diffusion. 112 Closely Associated Capillary Network– amino acids and monosaccharide are absorbed and quickly removed by blood to maintain a steep diffusion gradient. Lacteal – fatty acids and glycerol are absorbed into lymph vessel and quickly removed to maintain steep diffusion gradient. Muscle fibres at base of villi – allow villi to wiggle closer to soluble molecules and so shorten diffusion distance. *Lipids – travel in the lymph vessel and are used: ▪ To build hormones ▪ Build cell membranes ▪ As energy for muscle tissue. 4) Assimilation: Liver Assimilation – the process of using the small, soluble molecules to produce energy by respiration or to be used as raw materials for growth and repair. The liver is a unique organ in that it has two blood vessels that bring nutrient or oxygen rich blood to it: ▪ hepatic artery ▪ hepatic portal vein* *Soluble nutrient molecules such as amino acids and glucose are brought to the liver for processing. Glucose – ▪ Respired for energy ▪ Stored as glycogen ▪ Stored as fat for insulation Amino Acids – ▪ Used to build new proteins 113 ▪ Excess are deaminated, removing the amine group of the amino acids and producing urea to be excreted. The carboxyl part of the amino acid can be converted into carbohydrates for energy. 114 5) Egestion Egestion – the process of removing any undigested materials and waste from the body through the anus. What remains of the food now enters the large intestine. Composition of food residues: • • • • • • • • Water Cellulose and lignin (plant cell walls) Epithelial cells Bacteria Dead cells Bile salts Mucus Toxic residues This is now referred to as faeces. ❖ Any useful substances such as water (0.3-0.5dm3) and salt are absorbed back into the body and the remainder is egested through the anus. N.B. Fibre is important part of egestion. Fibre is largely made up of indigestible plant material and provides the bulk of faeces. The bulk is used to exercise intestinal walls (peristalsis) and to hold water in faeces which avoids constipation. If faeces are not egested regularly, the toxic residues in the faeces can irritate the delicate lining of the intestines and can lead to bowel cancer. Additionally, high fibre diets tend to have less sugar and fat and so reduce obesity and even heart disease. 115 A quick overview of the human alimentary canal. 116 Unit 8: Ecology Energy flow, energy loss The Sun is the principal source of energy input to biological systems. The Earth receives 2 main types of energy from the Sun: light (solar) and heat. Photosynthetic plants and some bacteria can trap light energy and convert it into chemical energy. Non-cyclical nature of energy flow Heterotrophic organisms obtain their energy by eating plants or animals that have eaten plants. So all organisms, directly or indirectly, get their energy from the Sun. The energy is passed from one organism to another in a food chain but, unlike water and elements such as carbon and nitrogen, energy does not return in a cycle. Energy give out by organisms is lost to the environment. 117 Energy is lost at each level in the food chain, as in the examples below. Energy lost through the process of respiration (as heat) Energy used up for movement (to search for food, find a mate, escape from predators…). Warm-blood animals (birds and mammals) maintain a standard blood temperature – they lose heat to the environment. Warm-blood animals lose heat energy in faeces and urine. Some of the material in the organism being eaten is not used by the consumer, for example a locust does not eat the roots of maize, and some of the parts eaten are not digestible. Even plants do not make use of all the light energy available to them. This is because some light: is reflected off shiny leaves is the wrong wavelength for chlorophyll to trap passes through the leaves without passing through any chloroplasts does not fall on the leaves. On average, about 90% of the energy is lost at each level in a food chain. This means that in long food chains, very little of the energy entering the chain through the producer is available to the top carnivore. So there tend to be small numbers of top carnivores. The food chain below shows how energy reduces through the chain. It is based on maize obtaining 100 units of energy. maize locust lizard snake 100 units 10 units 1 unit 0.1 unit On shorter food chains, less energy is lost. 118 Try this Figure below shows the flow of energy through a complete food chain: 119 1. a) Which form of the Sun’s energy is trapped by the producer? [1 mark] b) Into which energy form is the Sun’s energy converted when it is trapped by the producer? [1 mark] 2. a)The first consumer has received 6000 units of energy. How many units of energy (X on the figure) have been passed to the second consumer? [1 mark] b) How many units of energy (Y on the figure) are lost from the third consumer to the decomposers. [1 marks] 3. a) Suggest why the proportion of the energy intake which a producer loses to the environment (20%) is smaller than that lost to the environment by a first consumer (30%). [2 marks] b) Many countries have difficulty in producing enough food for their population. How might it help to overcome this problem if humans were always fed as first consumers, rather than second or third consumers? [3 marks] Answer 1. 2. 3. 120 Food chains Food chain is a chart showing the flow of energy (food) from one organism to the next beginning with a producer. Examples: mahogany tree maize caterpillar locust song bird lizard hawk snake A food chain usually starts with a photosynthetic plant, which gains its energy from the Sun. The arrows used to link each organism to the next represent the direction of energy flow. They always points towards the ‘eater’, and away from the plant. The feeding level is known as the trophic level. 121 Plant are producers (they make/produce food for other organisms). Animals that eat plants are primary consumers (a consumer is an ‘eater’). They are also called carnivore Examiner’s tips Make sure you can write a food chain involving 3 consumers, with the arrows in the correct direction. Don’t include the Sun (it is not an organism). Always start with the producer on the left of diagram. Practice labeling each trophic level in your food chain under the organisms (producer, primary consumer, etc.). Don’t waste time drawing plants and animals: this will not get you any extra marks. Common misconceptions Marks are often lost when students write out food chains and webs because they draw the arrows the wrong way round or put the chain backto-front (or both). The following example was seen in a recent paper: jackal sheep grass This student is suggesting that grass eats sheep and sheep eat jackals! 122 Food webs Food web is a network of interconnected food chains showing the energy flow through part of an ecosystem. These are a more accurate way of showing feeding relationships than food chains, because most animals have more than one food source. For example, in the food webs in figure below, the leopard feeds on baboons and impala. The leopard can be placed at 2 different trophic levels: 123 secondary consumer (feeding on imlala) quaternary or fourth level consumer (feeding on baboons). Another example of food web. Food webs are easily unbalanced, especially if one population of organisms in the web dies or disappears. This may happen for a number of reasons, including: over–predation or hunting disease pollution use of pesticides lack of food (or other resources) emigration. For example, in the food web here, if all the baboons were killed by hunters the leopard would have only impala to eat. So the impala population would decrease. The scorpion population may increase because of less predation by baboons, but if there are more scorpions they will eat more locusts, reducing the locust population, and so on. 124 Try this Figure below shows a food web: 1. Select appropriate organisms form the food web to complete each column in the table below. [4 marks] Consumer Producer Carnivore Herbivore Organism 1 Organism 2 2. Ladybirds eat aphids. A very large number of ladybirds arrive in the habita where these organisms live. Predict some of the possible effects this could have on the organisms in the above food web. [6 marks] Answer a) b) 125 Food pyramids of numbers, biomass and energy A food pyramid shows the relative sizes of different components at the various trophic levels of a food chain. There are three types of ecological pyramid we use: numbers, biomass and energy. In a food pyramid, each trophic level in a food chain is represented by a horizontal bar, with the width of the bar representing the number of organisms, the amount of biomass or the amount of energy available at that level. The base of the pyramid represents the producer; the second level is the primary consumer; and so non. 1. Pyramids of numbers A pyramid of numbers shows the relative number of organisms at each stage of a food chain. Example 1: clover → snail → thrush → hawk Clover is a plant and it is the producer in this food chain. Its bar goes at the bottom of the pyramid. Energy is lost to the surroundings as we go from one level to the next, so there are fewer organisms at each level in this food chain. A lot of clover is needed to support the snail population. A thrush eats lots of snails, and a hawk eats lots of thrushes, so the population of hawks is very small. 126 Other pyramid shapes Sometimes the pyramid of numbers doesn't look like a pyramid at all. This could happen if the producer is a large plant such as a tree, or if one of the animals is very small. Remember, though, that whatever the situation, the producer still goes at the bottom of the pyramid. Here are two examples like this: Example 2: Oak tree → Insects → Woodpecker An oak tree is very large so many insects can feed on it. 127 Example 3: Grass → Rabbit → Flea Fleas are very small and lots of them can feed on a rabbit. 128 2. Pyramids of biomass Sometimes a pyramid of numbers is not the best way to represent a food chain. In this case a pyramid of biomass (the dry mass of an organism) is a better diagram to use. It shows the total mass of organisms at each stage of a food chain. In general, all producers have a higher biomass than the primary consumer, so a pyramid will always be produced. The total energy (and biomass) present at a lower tier of the pyramid, must be greater than the higher tiers in order to support the energy requirements of the subsequent organisms. Pyramid of numbers and pyramid of biomass 129 3. Pyramids of energy Pyramid of energy shows amount of energy trapped per unit time and area at each stage of a food chain. A normal-shaped pyramid is always produced because there is a reduced amount of energy at each successive level. * Most of information in this post is taken from BBCBitesize 130 Food chains and energy efficiency In term of conversations of energy, there is an increased efficiency in supplying green plants as human food and a relative inefficiency in feeding crop plants to animals. Short food chains are more efficient than long ones in providing energy to the top consumer. Below are two food chains and energy values for each level in them. Both food chains have a human being as the top consumer. maize → cow → human unit of energy 100 10 1 maize → human unit of energy 100 10 Ten times more energy is available to the human in the second food chain than in the first. In the second food chain, the human is a herbivore (vegetarian). But eating parts of a cow provide humans with other nutrients, as well as those we gain energy from – it would be very difficult to persuade everyone to become vegetarian for the sake of energy efficiency. Some farmers try to maximize meat production by reducing movement of their animals (keeping them in pens or cages with a food supply) and 131 keeping them warm in winter. This means less stored energy is wasted by the animals. Why food chains usually have fewer than 5 trophic levels? As the energy is passed along the chain, each organism uses some of it. So the further along the chain you go, the less energy there is. The loose of energy along the food chain limits the length of it. There rarely more than 5 links in a chain, because there is not enough energy left to supply the next link. Many food chains only have 3 links. 132 Invasive species An invasive species is a plant or animal that has been introduced to an ecosystem intentionally or by accident. It is not native to the ecosystem and this, usually, leads to problems. As it is not native, it is going to disrupt the food web. One of the main problems is that there are no natural predators for the species, nothing to keep its numbers down. So, if the new species finds a source of food and begins to reproduce its population will get out of control very quickly. This affects all other members of the food web. Invasive species are a fascinating area of study in biology. Most countries have problems with at least one. Some of the reasons that they have been introduced vary from accidental- zebra mussels in the Great Lakes and the brown tree snake in Guam, to intentional- cane toad and rabbit in Australia. Look up the four invasive species mentioned above and look up a few more. Investigate why the species were introduced in the first place and also what damage they are doing. Invasive species research. 1. Name of species and countrySpecies sufferingActions being done to control the invasive species2. Name of species and countrySpecies sufferingActions being done to control the invasive species- 3. Name of species and countrySpecies sufferingActions being done to control the invasive species 133 Population Size Population size depends on birth rates, death rates, immigration and emigration. Immigration - IN Emigration - EXIT The factors influencing birth and death rates are the limiting factors on population growth. The biggest population that a given area can support is called its carrying capacity. The three factors that affect population size are: • Food Supply • Disease • Predation (being eaten) Growth can be shown using the sigmoid growth curve which is shown below: The phases a-e are shown below: A = Lag phase (population settling in) B = Exponential growth (Log) phase C = Population growth slows down D = Stationary phase (zero growth) E = Death phase 134 Human Population Growth Curves Globally, the human growth curve is still in the log phase, This is mainly due to: • Increased health care: - reduced mortality (death rate of children). - less disease. • More efficient agriculture: - better food supply. - better nutrition. • Decreased predation - substituted to a degree by military conflict. 135