Texas Southmost College BIOL 2120.M01: Microbiology Lab for Non-Science Majors Instructor Name: Babajide Ajanaku Phone: 956-295-3749 Email: Babajide.ajanaku@tsc.edu I will respond to you email within a 24 hours period, except the weekends. Office Hours: Required MTWTHF: -12:00-1:00 pm Semester: Spring 2022 Office Location: SET: B-Rm. 2.322 Course Description This course covers basics of culture and identification of bacteria and microbial ecology. This course is primarily directed at pre-nursing and other pre-allied health majors and covers basics of microbiology, infectious diseases, and public health. Course Prerequisites Prerequisite: TSI met in reading, writing and math or ELAR and math or equivalent. Corequisite: BIOL 2320. Lab 4, Cr 1 Student Learning Outcomes Upon completion of this course, students will: 1. Use and comply with laboratory safety rules, procedures, and universal precautions. 2. Demonstrate proficient use of a compound light microscope. 3. Describe and prepare widely used stains and wet mounts, and discuss their significance in identification of microorganisms. 4. Perform basic microbiology procedures using aseptic techniques for transfer, isolation and observation of commonly encountered, clinically significant bacteria. 5. Use different types of bacterial culture media to grow, isolate, and identify microorganisms. 6. Perform basic bacterial identification procedures using biochemical tests. 7. Estimate the number of microorganisms in a sample using methods such as direct counts, viable plate counts, or spectrophotometric measurements. 8. Demonstrate basic identification protocols based on microscopic morphology of some common fungi and parasites. Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 1 THECB Core Curriculum Through the core curriculum, students will gain a foundation of knowledge of human cultures and the physical and natural world; develop principles of personal and social responsibility for living in a diverse world; and advance intellectual and practical skills that are essential for all learning. THECB Core Objectives: (List of objectives required for this course) Critical Thinking Skills (CT) – to include creative thinking, innovation, inquiry, and analysis, evaluation and synthesis of information Communication Skills (COM) – to include effective development, interpretation and expression of ideas through written, oral and visual communication Empirical and Quantitative Skills (EQS) – manipulation and analysis of numerical data or observable facts resulting in informed conclusions Teamwork (TW) – to include the ability to consider different points of view and to work effectively with others to support a shared purpose or goal NOTE: This course is not a Core Science Course; however, the usual science core objectives, listed above, will be assessed. All required Core Objectives will be assessed for all courses offered as part of the Core Curriculum; optional Core Objectives may be assessed at faculty discretion, and will be considered in program-level reviews of institutional effectiveness relating to the delivery of instruction. Learning Outcome and Curriculum Map Semester Project (Signature Assignment) Quizzes Assignments X X X X X X X X X X EQS, SLO 7 X X X X X TW X Learning Outcome and Core Objective CT, SLOs 1, 5, 6, 8 COM, SLOs 2, 3, 7 Mid-Term Exam Final Exam X (some) Course Materials Text: Microbiology –Laboratory Theory & Application Brief Third Edition By Michael J. Laboffe and Burton E Pierce. Morton-pub.com ISBN 10:1-61731-4773, ISBN 978-1-61731-477-3 Course Components Attendance and Participation (required) Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 2 Quizzes and/or Assignments (in-class and online) Mid-term Exam Final Exam Course Grading Grading Scheme Activity Types Quizzes & Assignments Midterm Exam Signature Assignment Final Exam Point Values 20% 30% 20% 30% Total: 100% Grading Conversion Table Letter Grade A B C D F Grade Point 4.0 3.0 2.0 1.0 .0 Percentage 90-100 80-89 70-79 60-69 0-59 Numerical Value 4 3 2 1 0 Operational Value Exemplary Proficient Developing Beginning Not Evident Numerical and operational values apply to assessment of signature assignments only. 1. Criteria will reflect alignment of Student Learning Outcomes and Core Objectives. 2. Numerical rating is 0-4. Course Calendar Days Week 1 Week 2 Version # 3.0 Learning Objectives & Topics Introduction: Lab Orientation, Student Safety Contract, Scientific Investigation/Exercise #2-1: Ubiquity of Microorganisms Exercises #3-1, 3-3: Introduction to the Light Microscope, Microscopic Examination of Eukaryotic Microbes Implemented By Instruction Work & Due Dates Lab Safety Quiz Homework Questions Due on Canvas before Next Class Meeting Pre-Lab Quiz Due on Canvas before Next Class Meeting Readings & Resources (Pages in lab book) N/A/ (61-66) (143-152, 159-172) In Class Assignment Due at end of Class Revision Date 10.18.2021 3 Week 3 Exercises #1-4 – 1-6: Common Aseptic Transfers and Inoculation Methods, Streak Plate Methods, Spread Plate Methods/Exercises# 2-2 – 2-4: Colony Morphology, Growth Patterns on Slants, Growth Patterns in Broth Week 4 Exercises #3-4 – 3-5: Preparation of Smears & Simple Stains/Negative Stains Week 5 Exercise #3-6: Gram Stain Exercise #3-7: Acid-Fast Stains Week 6 Exercises #3-8 – 3-11: Capsule Stain, Endospore Stain, Bacterial Motility: Wet Mount, Bacterial Motility: Flagella Week 7 Midterm Exam/Exercises #4-3 – 4-5: Mannitol Salt Agar, MacConkey Agar, Eosin Methylene Blue Agar Week 8 Exercise #8-2: Bacterial Transformation: The pGLO™ System Week 9 Week 10 Version # 3.0 Exercise #2-13: Effectiveness of Chemical Germicides/Discuss Identification of Unknowns Project Exercise #2-12: The Effect of Ultraviolet Radiation on Microbial Growth/Exercise #3-12: Begin Identification of Unknowns Project Part I Implemented By Instruction Pre-Lab Quiz Due on Canvas before Next Class Meeting In Class Assignment Due at end of Class (31-58)/ (67-86) Pre-Lab Quiz Due on Canvas before Next Class Meeting (173-182)/ (183-186) In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting (187-194)/ (195-200) In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting (201-220) N/A/(227-228, 241-260) Bio-Rad Kit In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting (135-140)/ N/A In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting (131-134)/ (221-226) In Class Assignment Due at end of Class Revision Date 10.18.2021 4 Week 11 Exercise #7-2: Antimicrobial Susceptibility Test/Exercise #3-12: Continue Identification of Unknowns Project Part I Week 12 Exercise #3-12: Complete Identification of Unknowns Project Part I/Exercise #9-5: Begin Identification of Unknowns Project Part II (EnteroPluri-Test) Week 13 Exercise #9-5: Continue Identification of Unknowns Project Part II Week 14 Exercise #9-5: Finish Identification of Unknowns Project Week 15 Identification of Unknowns Project Presentations/ Review for Final Exam Week 16 Final Exam (Comprehensive) Pre-Lab Quiz Due on Canvas before Next Class Meeting (447-454)/ (221-226) In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting (221-226)/ (581-588) In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting (581-588)/ In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting (581-588)/ In Class Assignment Due at end of Class Pre-Lab Quiz Due on Canvas before Next Class Meeting In Class Assignment Due at end of Class In Class Exam, including practical questions N/A Student Created Topic Review Available on Canvas Assignments (30%) Quizzes and Assignments: These activities include pre-lecture quizzes. In addition, students will have homework questions and/or a case study to help them review the material. Quizzes (0%) Part of Assignments. See above Signature Assignment (20%) Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 5 The signature assignment for this course is an in-depth exploration of the scientific method in which student teams design and carry out an experiment. The assignment is scaffolded by the assignments described above and the final product is a lab report or scientific-style poster and a reflection that each student turns in individually. This is a team work based on one of the experiments performed in the Lab. Please follow this Template. Introduction, Hypothesis, Raw materials, Data Collection, Data Analysis and conclusion. Mid-Term Exam (25%) Final Exam (25%) This exam is given during finals week and covers the content from whole semester. It will include different styles of questions, such as multiple choice, multiple answer, short answer, and critical thinking. Library Services Texas Southmost College Library Services are now available in SET-B 1.536. Our librarian, Mrs. Nancy Bond, will help you navigate through our vast digital library, which includes more than: 450,000 e-books 200 databases, including full-text of more than 90,000 e-journals 1,000 online periodical titles Our library services also include access to computers so you can search through the digital library, research your study topics, and complete your homework in a quiet space. For more information, please call Mrs. Bond at (956) 295-3452 or go to tsc.edu/library to visit our digital library. At the UTRGV Library, TSC students continue to have access to the following: More than 538,371 circulating books 9,824 audio/visual items, including CDs, DVDs, and LPs An estimated one million items in the archives and special collections More than 1,000 individually purchased periodical titles in print, microfilm, and online Study space on every floor and rooms that can be reserved for group projects Please bring your TSC ID if you want to check out library materials from or use other resources at the UTRGV Library. For more information on UTRGV library services, call (956) 882-8221. Student Help Assistance with Course Content Student help is available directly from your instructor via email, telephone, video conferencing and in person by appointment. Your instructor has scheduled office hours and can also meet with you at other mutually convenient times to help you understand course content. Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 6 Please begin all emails to your instructor with the course and section number "ENGL-1301.M01" in the subject line and include your first and last names at the end of all messages. Assistance with Canvas For 24/7 support for Canvas Learning Management System (LMS), please call the Canvas Support Hotline (+1-844-880-9810) or use the Chat with Canvas Support feature located on the Canvas help menu to submit a ticket. For technical (non-Canvas) issues, please contact the HELP DESK at (956) 295-3800 or email helpdesk@tsc.edu. Help desk staff are available MondayThursday from 8:00 a.m. to 6:00 p.m. and on Friday from 8:00 a.m. to 5:00 p.m. General Course Requirements/Instructor’s Expectations 1. Be punctual. The learning environment must be conducive to learning for all students. Tardiness is distracting and disruptive to your fellow classmates as well as the instructor. If you miss quizzes or class assignments due to tardiness, you may not be able to make up the missed grade. You may visit with fellow classmates to acquire notes of information missed or make an appointment with the instructor for further direction. 2. Avoid absences. Be absent ONLY when absolutely necessary. Your best chance to do well in this class is to attend every class meeting. 3. Be diligent. In order to be prepared for class, you are expected to complete the weekly readings and assignments by the due date. You are also expected to actively participate with the learning content using the Canvas platform. You can access your course site at: https://texassouthmostcollege.instructure.com. Regular and punctual class attendance is essential and no assigned work is excused because of an absence, no matter what the cause. Records of class attendance and participation are kept by faculty. When an accumulation of absences reaches the point of endangering your academic status, the faculty member can report this situation to the Early Alert and Intervention team. 4. Plan ahead for quizzes. Make-up quizzes may be allowed at the discretion of the instructor. A grade of a zero will be recorded for every quiz missed. Quizzes are to be taken in class when provided or in Canvas when scheduled. Depending on instructions, quizzes may be taken without notes or textbooks so follow instructions carefully. Canvas will automatically stop the quiz or examination when the allotted time has been reached; therefore, be vigilant of your testing time. Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 7 5. Plan ahead for exams. Make-up exams may be allowed at the discretion of the instructor. Canvas will automatically stop the examination when the allotted time has been reached; therefore, be vigilant of your testing time. 6. Submit assignments on-time. Late work of any kind may be accepted at the discretion of the instructor. 7. Extra Credit. Extra credit may be awarded at the discretion of the instructor. The instructor will determine the means by which extra credit can be redeemed if appropriate. 8. Silence your mobile devices. Cell phones are required to be “turned off” or set on a silent/vibrate mode during class. Under no circumstances will any student be allowed to carry on a telephone conversation or text during the class session. In case of emergencies, please leave the room as quietly and courteously as possible. 9. Maintain a clean learning environment. You may keep food and drinks at their desks; however, you must ensure the area is clean before leaving for the day. In lab environments, food and drinks are not permitted around lab equipment. 10. Demonstrate respect in the physical and virtual classroom. Each student is expected to demonstrate respect for the instructor, fellow classmates, and external learning experience site personnel (if applicable). College Policies Satisfactory Academic Progress (SAP) Federal regulations require all students applying for financial assistance to maintain Satisfactory Academic Progress in order to receive aid. The progress standards that you are required to meet in order to maintain financial aid eligibility are: Grade Point Average. This qualitative measure requires undergraduate students working towards a certificate or an associate degree to maintain a minimum cumulative Grade Point Average (GPA) of 2.000. This includes grades earned for developmental, dual enrollment, and/or transfer coursework; Completion Rate. This quantitative measure requires undergraduate students maintain a cumulative completion rate of 67% of the attempted coursework (including developmental, dual enrollment, and/or transfer hours accepted by TSC). This percentage is determined by dividing the number of hours completed by the total number of hours attempted. Attempted hours are the total number of hours completed plus hours of “W”, “I”, “F” (as well as repeated coursework); and Timeframe to Complete Academic Program. This measure limits the number of credit hours attempted in the pursuit of an undergraduate certificate or a degree. The maximum attempted Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 8 hours are 150% of the credits required to complete the students’ program of study. For the purposes of obtaining an associate degree at TSC requiring 60 credit hours, the maximum is typically 90 credit hours, including developmental, dual enrollment, and/or transfer coursework. Students contemplating degree plan changes should consider the ability to complete a new plan with the maximum allowable limits. Compliance with SAP must be met in order for a student to retain their financial aid eligibility. Students are advised to check their status through their TSC Online account. “Incomplete” Grades At the discretion of the instructor, a conditional grade of “I” may be issued to a student who has a passing average on all completed coursework, but for a justified reason, such as illness or death in the family, has been prevented from taking the final examination or completing other required coursework. The “I” becomes an “F” following the completion of the next long (fall or spring) semester, unless the student completes the balance of the coursework with a performance grade of “D” or higher. Re-enrollment in the course will not change the incomplete status. Academic Integrity Students are expected to be above reproach in all scholastic activities. Students who engage in scholastic dishonesty are subject to disciplinary penalties, including the possibility of failure in the course and expulsion from the College. Scholastic dishonesty includes but is not limited to cheating, plagiarism, collusion, and submission for credit of any work or materials that are attributable in whole or in part to another person, taking an examination for another person, any act designed to give unfair advantage to a student, or the attempt to commit such acts. Since scholastic dishonesty harms the individual, all students, and the integrity of the College, policies on scholastic dishonesty will be strictly enforced. All scholastic dishonesty incidents will be reported to the Vice President of Student Services. Do not allow your peers to pressure you to cheat. Your grade, academic standing, and personal reputation are at stake. Some components of this course are designed to be highly interactive with students helping each other learn; however, all written assignments are designed to represent the efforts of each student individually and not to be shared. When students submit their efforts for grading, they are attesting that they have abided by this rule. Plagiarism includes, but is not limited to, the use of, by paraphrase or direct quotation without correct citation in the text and on the reference list, the published or unpublished works of another person. Students may not submit papers and assignments that they have previously submitted for this or other courses. The use of materials generated by agencies engaged in "selling" term papers is also plagiarism. Students are encouraged to review the tutorials and suggested websites for more information about plagiarism. Papers and other assignments may be submitted to an external agency for verification of originality and authenticity. Adhere to copyright regulations Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 9 Unauthorized photocopying of copyrighted works, including musical works, may be unlawful and may infringe the copyright of the copyright owner. Students in possession of unauthorized duplications of copyrighted material are subject to appropriate disciplinary action as well as those civil remedies and criminal penalties provided by federal law. Student Initiated Withdrawals Students are encouraged to meet with a faculty member or advisor before they withdraw from a course. A withdrawal will result in a “W” on the official transcript if the withdrawal occurs after the census date and before the deadline to withdraw from a course. A Withdrawal form must be submitted to the Office of Admissions and Records for processing. Students are responsible for following up and confirming that requests to withdraw from classes have been processed. It is the responsibility of the student to “withdraw” from a course. Emergency Academic Continuity Plan In compliance with the TSC Emergency Academic Continuity Program, courses, partially or entirely, will be made available on the Canvas Learning Management System. This allows faculty members and students to continue teaching and learning via Canvas, in case the College shuts down as a result of a hurricane or any other major disruption. The college will use Canvas to post announcements notifying faculty members and students of their responsibilities during this time. If the college is forced to shut down, faculty will notify students through their course(s). To receive credit for a course, it is the student’s responsibility to complete all the requirements for that course. Failure to access course materials, once reasonably possible, can result in a reduction of your overall grade in the class. To facilitate the completion of class, all communication between students and the institution, the instructor, and fellow classmates will take place using students’ TSC primary email address. Students may update their phone number, address, and secondary email address, by logging in to TSC Online (www.tsc.edu). In the event of a disaster that disrupts normal operations, all students and faculty must make every effort to access an internet-enabled computer as often as possible to continue the learning process. Americans with Disabilities Act (ADA) Students with disabilities, including learning disabilities, who wish to request accommodations in this class should notify the Disability Support Services early in the semester so that the appropriate arrangements may be made. In accordance with federal law, a student requesting accommodations must provide documentation of his/her disability to the Disability Services counselor. Contact Information: Student Accessibility Resources Lightner Center 100 C Office: (956) 295-3417 Fax: (956) 544-9093 Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 10 Privacy/FERPA Statement As a student at Texas Southmost College, your education record information is protected by FERPA. The Family Educational Rights and Privacy Act (FERPA) of 1974 is a federal law that requires Texas Southmost College to treat your education records in a legally specified manner. As a student, under FERPA you have the following rights: 1. The right to inspect and review your own education records within 45 days of the day the College receives a request for access. 2. The right to request to amend of your education records if you believe they are inaccurate or misleading. 3. The right to limit the disclosure of personally identifiable information designated by the College as "directory information." 4. The right to file a complaint with the U.S. Department of Education concerning an alleged failure by the College to comply with the requirements of FERPA. The name and address of the office that administers FERPA is: Family Policy Compliance Office U.S. Department of Education 400 Maryland Avenue, SW Washington, DC 20202 The Office of Admissions and Records maintains student records and has available the categories of information made available as public information, and the manner in which students may request that information about them not be released as public information. For more information contact: Texas Southmost College Executive Director of Enrollment and Academic Support Services Oliveira Student Services Center 80 Fort Brown, Brownsville, Texas 78520 (956) 295-3615 Note: Course content and schedule may vary from that specified by this syllabus (and related documents), to accommodate contingencies that may develop during the course. The instructor will explain the rationale for any variance as it occurs. Version # 3.0 Implemented By Instruction Revision Date 10.18.2021 11