Uploaded by amanuelaweke13

2020-Theeffectofsoilorganicmatteronplantmineralnutrition (2)

advertisement
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/339402843
The effect of soil organic matter on plant mineral nutrition
Chapter · February 2020
DOI: 10.19103/AS.2019.0062.14
CITATIONS
READS
4
589
9 authors, including:
Oscar Urrutia
Marta Fuentes
Universidad de Navarra
Universidad de Navarra
32 PUBLICATIONS 711 CITATIONS
58 PUBLICATIONS 2,132 CITATIONS
SEE PROFILE
SEE PROFILE
Maite Olaetxea
M. Garnica
Universidad de Navarra
Universidad de Navarra
24 PUBLICATIONS 399 CITATIONS
49 PUBLICATIONS 1,681 CITATIONS
SEE PROFILE
SEE PROFILE
Some of the authors of this publication are also working on these related projects:
Role of organic acids as plant biostimulators View project
Relación entre el balance hormonal y la calidad fenólica de la uva en plantas sometidas a déficit hídrico View project
All content following this page was uploaded by Roberto Baigorri on 03 March 2020.
The user has requested enhancement of the downloaded file.
BURLEIGH DODDS SERIES IN AGRICULTURAL SCIENCE
Achieving sustainable
crop nutrition
Edited by Professor Zed Rengel
University of Western Australia, Australia
E-CHAPTER FROM THIS BOOK
The effect of soil organic matter
on plant mineral nutrition
O. Urrutia, J. Erro, M. Fuentes, M. Olaetxea and M. Garnica, University of Navarra, Spain;
R. Baigorri, TIMAC AGRO, UK; A. M. Zamarreño, M. Movila and D. De Hita, University of
Navarra, Spain; and J. M. Garcia-Mina, University of Navarra, Spain and Centre Mondial De
L’Innovation Roullier, France
1
Introduction
2
The main mechanisms involved in the beneficial action of humic
substances on plant mineral nutrition: the complexing and biochemical
pathways
3
A possible signalling crosstalk between the biochemical and complexing
pathways
4
Conclusion
5
Acknowledgements
6
Where to look for further information
7
References
1 Introduction
The functional relationships between soil fertility and the content of natural
organic matter in soil are well known (Chen et al., 2004a; Magdoff and Weil,
2004). One of the main components of soil organic matter (SOM) is soil humus,
which results from the abiotic and biotic transformation of fresh organic matter
in soil (Chen et al., 2004a; Stevenson, 1994). Soil humus, in fact, is a very complex
organic system including simple biomolecules as well as highly complex and
transformed biomolecules that are normally known as humic substances (HS)
(Stevenson, 1994; Wershaw, 1993; Piccolo, 2002; Baigorri et al., 2007). From
an operational viewpoint, HS are fractionated in the laboratory into three main
fractions: (i) the humic acids (HA) that are soluble at basic pH but not at acidic
pH, (ii) the fulvic acids (FA) that are soluble at both acidic and basic pH and (iii)
the humin that is insoluble in water regardless of pH (Stevenson, 1994). The HA
fraction may be further separated to grey HA and brown HA taking advantage
of their different solubility at neutral pH and high ionic strength (Stevenson,
1994; Baigorri et al., 2007).
http://dx.doi.org/10.19103/AS.2019.0062.14
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
Chapter taken from: Rengel, Z. (ed.), Achieving sustainable crop nutrition,
Burleigh Dodds Science Publishing, Cambridge, UK, 2020, (ISBN: 978 1 78676 312 9; www.bdspublishing.com)
2
The effect of soil organic matter on plant mineral nutrition
Although the chemical nature and structural features of HS are the
object of intense discussion in the literature (Lehmann and Kleber, 2015;
Olaetxea et al., 2018), recent studies have demonstrated that these organic
molecules have specific structural features that are not present in well-defined
biomolecules such as proteins, microbial metabolites, polysaccharides,
lignin or cellulose (Cao and Schmidt-Rorh, 2018). These distinctive structural
features appear to be related to specific distributions of aromatic moieties
in large aliphatic ones in the complex molecular aggregates (Perminova
et al., 2018). Molecular aggregation provides HS with some new chemical
properties such as amphiphilicity that influences their ability to interact with
inorganic and organic molecules, as well as with root surfaces (Olaetxea et al.,
2018) (Fig. 1). The emergence of new properties associated with molecular
aggregation allows us to consider HS as a family of natural supramolecules
(Piccolo, 2002). In fact, the supramolecular and macromolecular characters
of HS are coexisting in solution. Thus, grey HA is mainly macromolecular,
whereas brown HA and, principally, FA are supramolecular (Baigorri et al.,
2007; Garcia-Mina, 2007).
Many studies have reported the capacity of HS to improve the growth of
plants cultivated in soils as well as in inert substrates and hydroponics (Chen
and Aviad, 1990; Chen et al., 2004a; Rose et al., 2014; Canellas et al., 2015). In
general, the various effects caused by HS in plants are divided into two main
classes: the indirect effects resulting from the interaction of HS with the main
components of the soil and rhizosphere and the direct effects resulting from
the interaction of HS with cell membranes at root surface (Chen and Aviad,
1990; Chen et al., 2004a; Olaetxea et al., 2018). Both types of HS-mediated
effects affect plant mineral nutrition. The indirect effects of HS include an
increase in the fraction of bioavailable nutrients in the rhizosphere, whereas
Figure 1 A structural model of leonardite humic acid proposed from the C13-NMR, FTIR,
dynamic light scattering and elemental analysis data (the primary structure has been
optimized using the Hyperchem 8.0 software).
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
The effect of soil organic matter on plant mineral nutrition
3
the direct effects are related to a high efficiency in nutrient uptake by roots and
further utilization within the plant.
In this chapter we discuss these effects of HS on plant mineral nutrition as
well as possible signalling pathways involved in their regulation and interactions.
2 The main mechanisms involved in the beneficial
action of humic substances on plant mineral nutrition:
the complexing and biochemical pathways
2.1 The indirect effects of humic substances
on plant mineral nutrition
The capacity of HS, both HA and FA, to interact with metals in soils and waters
has been well established by many studies (Stevenson, 1994; Chen and Aviad,
1990; Chen et al., 2004a; Senesi, 1992; Tipping, 2002). This capacity of HS
lies in the presence of certain functional groups in the HS structure. These
functional groups can contain oxygen (O) (e.g. carboxylic, hydroxyl, phenolic
and carbonyl), nitrogen (N) (e.g. amide, amine) or sulphur (S) (e.g. sulfhydryl)
(Stevenson, 1994; Senesi, 1992; Tipping, 2002) (Fig. 2). Through these functional
groups, HS react with metals, forming stable complexes in soil solution and soil
interphases (Stevenson, 1994; Senesi, 1992; Tipping, 2002) (Fig. 3a).
Two main types of HS-metal interactions can be defined depending on
whether the interaction influences the water solubility and bioavailability
of cations – for example, some micronutrients such as iron (Fe), copper (Cu),
zinc (Zn) or manganese (Mn), or anions (mainly phosphate). In the case of
micronutrient availability, the direct binding of the metal to the binding sites in
HA has most relevance, whereas for macronutrient availability this interaction
also involves the binding of the anion to the HS-binding sites through the metal
bridges (Chen et al., 2004a; Urrutia et al., 2013, 2014).
2.1.1 Humic substances – metal complexation
affecting micronutrient availability
Many studies have demonstrated that soil pH and soil mineral composition affect
the availability of the main micronutrients with metallic character, mainly Fe, Cu,
Mn and Zn (Mortvedt et al., 1991). Thus, alkaline and calcareous soils favour
micronutrient precipitation in the form of hydroxides that are rapidly transformed
into stable oxides (Mortvedt et al., 1991). This precipitation is associated with a
decrease in the availability of these micronutrients to plants and microorganisms
that, in turn, causes nutritional deficiencies that are behind significant reductions
in crop yield and fruit quality (Mortvedt et al., 1991). In this context, many
studies have reported the beneficial action of SOM, and principally of HS, on
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
4
The effect of soil organic matter on plant mineral nutrition
Figure 2 Main functional groups present in humic substances that may act as binding
sites for metal complexation.
Figure 3 (a) Fe complexation by a salycilic type-binding site in humic substances (HS); (b)
Phosphate binding in a salycilic type-binding site in HS through an Fe bridge. (hydrogen
atoms in white; carbon atoms in grey; oxygen atoms in red; iron atoms in purple;
phosphorus atoms in yellow.)
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
The effect of soil organic matter on plant mineral nutrition
5
micronutrient availability resulting from their capacity to form stable and watersoluble metal complexes (Chen and Aviad, 1990; Chen et al., 2004a). In fact, the
major fraction of these micronutrients that is present in the soil solution of alkaline
and calcareous soils is in the form of stable complexes with the dissolved organic
matter (DOM)-humic fractions (Geering et al., 1969; Mortvedt et al., 1991).
The role of HS as enhancers of micronutrient availability for plants has great
relevance in case of Fe. Many studies have demonstrated that HS are directly
involved in the availability of Fe in alkaline and calcareous soils, as probably
the most important growth-promoting action of HS, principally in soils with low
SOM (Chen et al., 2004a,b). Some studies suggest that this might also be the
case for other micronutrients such as Zn and Cu (Chen et al., 2004a,b; GarciaMina et al., 2004).
It is noteworthy that the maximum stability and water solubility of these
HS-metal complexes correspond to a pH interval 7–10 that is associated with
the minimum water solubility of the free metals (Tipping, 2002; Garcia-Mina
et al., 2004; Garcia-Mina, 2006). Likewise, acidic pH values that are associated
with high (in some cases toxic) micronutrient concentrations in soil solutions are
linked to low HS-metal stability and water solubility (Garcia-Mina et al., 2004;
Garcia-Mina, 2006).
There exists certain specificity in the functional groups involved in the
complexation of each metal. Thus, carboxylic groups in aliphatic domains
appear to be the major ligands for Fe complexation, whereas phenols at
alkaline pH and amines at acidic pH are likely to be the major binding sites for
Cu complexation (Fuentes et al., 2013).
Studies involving HS-metal complexes and plants growing in soil or
hydroponics under micronutrient deficiency have demonstrated the capacity
of plant roots to hydrolyse the HS-metal bonds and take up micronutrients
(Chen et al., 2004a,b; Garcia-Mina et al., 2004; Urrutia et al., 2014). This process
appears to involve local acidification of root surface as well as the possible
release of complexing and/or reducing agents as root exudates (Chen et al.,
2004a,b; Garcia-Mina et al., 2004; Urrutia et al., 2014).
Efficiency of natural HS-metal complexes to alleviate micronutrient
deficiency has promoted development of similar metal-complexing
compounds in laboratory and in large-scale production as potential correctors
of micronutrient deficiency in crops (Garcia-Mina et al., 2004 and references
therein).
2.1.2 Humic substances – metal complexation
affecting macronutrient availability
Phosphorus (P) availability is very low in alkaline/calcareous as well as
acidic soils (Urrutia et al., 2014 and references therein). In calcareous soils
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
6
The effect of soil organic matter on plant mineral nutrition
phosphate tends to precipitate as calcium phosphates, whereas in acidic soils
phosphate availability is decreased by the formation of Fe and aluminium (Al)
phosphates as well as the adsorption on clay minerals (Urrutia et al., 2014).
In this context, several studies have shown that, as in the case of metallic
micronutrients, the presence of humified organic matter in soil increases
phosphate solubility in soil solution and, thereby, P availability (Urrutia et al.,
2014).
Among different mechanisms that may explain the beneficial effects of SOM
on P availability, the potential formation of stable compounds containing both
HS and phosphate appears to play a relevant role (Gerke, 2010; Urrutia et al.,
2014). A number of studies have shown that the capacity of HS to form stable
complexes with metals can also influence availability of some macronutrients,
mainly P. This is because HS can complex P by the formation of metal bridges
between the negatively charged functional groups in HS and the phosphate
anion (Gerke, 2010; Urrutia et al., 2013, 2014) (Fig. 3b).
Several studies have demonstrated that this HS-metal-P (phosphate) type
of complex has stability similar to that of HS-metal complexes (Guardado et al.,
2005, 2007, 2008; Urrutia et al., 2013, 2014). However, various plant species
were shown to hydrolyse these HS-metal-P complexes at the root surface and
take up both the metal and phosphate (Urrutia et al., 2013). In fact, fertilizers
that contain these P-humic complexes have proved to be highly effective in
providing available P to plants growing in alkaline/calcareous as well as acidic
soils (Erro et al., 2007, 2009, 2012). Similarly, the formation of stable humicmetal complexes with sulphate might also improve plant uptake of S (Baigorri
et al., 2013).
HS may also improve N and K plant uptake (Olaetxea et al., 2018). As
discussed in the following sections, such improvements appear to be related
to the direct HS effects on enhancing nutrient uptake by roots. In fact, the
chemical interaction between HS functional groups and K or ammonium is
mainly ionic and quite weak. Likewise, there is no experimental evidence
showing stable chemical interactions between HS and nitrate (Stevenson,
1994).
2.1.3 Conclusions
These results clearly show that HS may benefit plant mineral nutrition by
increasing the pool of available nutrients present in soil, particularly in the
rhizosphere, via complexation. The chemical activity of HS relies on the
presence of specific functional groups distributed throughout their structure,
allowing formation of stable metal complexes with variable water solubility
depending on pH and metal:HS ratio.
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
The effect of soil organic matter on plant mineral nutrition
7
2.2 The direct effects of humic substances
on plant mineral nutrition
In addition to the previously discussed indirect effects of HS influencing nutrient
availability in soils, a number of studies have reported the capacity of HS to also
influence nutrient root uptake mechanisms as well as nutrient metabolism in
plants (Nardi et al., 2002; Olaetxea et al., 2018). These direct effects arising from
the interaction of HS with cells at the root surface result in the HS-dependent
regulation of the biochemical and molecular networks associated with root
nutrient uptake at the three levels:
1 The root plasma membrane (PM) H+-ATPase activity,
2 Specific root nutrient transporters, and
3 Major enzymes involved in nutrient utilization within plants.
As in the case of the complexing action of HS, several studies have shown that
the physiological effects associated with the direct effects of HS are greatly
influenced by the structural features of HS (Garcia et al., 2016).
2.2.1 The effects of humic substances on the root PM-ATPase
at the transcriptional and enzyme-activity levels
Proton transport is directly involved in the generation of membrane potential
gradients and, therefore, in the regulation of many processes associated with
the transport of minerals and organic solutes. Proton transport is governed
by plasma membrane H+-ATPase activity, with the energy needed for setting
up the gradients provided by ATP hydrolysis (Falhof et al., 2016). In this
framework, it becomes clear that those compounds that stimulate PM H+ATPase activity at the root surface may promote transport of many ions into
plant tissues.
A number of studies have demonstrated the capacity of HA extracted from
diverse organic substrates (leonardite, peat and vermicompost) to significantly
increase root PM H+-ATPase activity (Pinton et al., 1999; Canellas et al., 2002;
Mora et al., 2010). This effect was associated with stimulation of some processes
related to the development of both roots and shoots, such as lateral root
proliferation and shoot growth (Zandonadi et al., 2007, 2010; Mora et al., 2010).
Likewise, the HA-mediated increase in the root PM H+-ATPase activity was also
linked to the increase in root uptake of some nutrients such as nitrate (Pinton
et al., 1999) or Fe (Aguirre et al., 2009). In addition, HA caused an increase in
the root-to-shoot translocation of practically all nutrients, likely linked to the
HA capacity to promote root-to-shoot cytokinin transport (Mora et al., 2010;
Olaetxea et al., unpublished results).
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
8
The effect of soil organic matter on plant mineral nutrition
The effects of HS on root PM H+-ATPase activity were accompanied by
significant up-regulation of the genes encoding some isoforms of the root
PM H+-ATPase in cucumber (Aguirre et al., 2009). It was noteworthy that the
isoform transcriptionally up-regulated by HA (Cs-HA2) was different from that
up-regulated by Fe deficiency (Cs-HA1) (Aguirre et al., 2009). Another study in
maize also showed that HA extracted from vermicompost may up-regulate the
expression of the ZmHA2 gene (Quaggiotti et al., 2004). Similarly, HA extracted
from leonardite up-regulated the genes coding for other ATPase isoforms in
cucumber in addition to Cs-HA2, such as the Cs-HA4, Cs-HA8 and Cs-HA9
(Olaetxea et al., unpublished results).
It is likely that root uptake of other major nutrients is also enhanced by a
HS-influenced increase in root PM H+-ATPase activity, particularly in case of K
and sulphate as well as Mg and Ca (Marschner, 2012).
2.2.2 The effects of humic substances on root nutrient transporters
In addition to the previously discussed action of HS on root PM H+-ATPase
activity, a number of studies have demonstrated the capacity of HA of diverse
origin to regulate the expression of genes encoding major nutrient transporters
in roots (Olaetxea et al., 2018 and references therein).
Regarding Fe, many studies have reported the capacity of HA extracted
from leonardite to increase the expression of the gene encoding an Fe(II)
transporter, IRT1, in the roots of cucumber plants growing with no limitation
of Fe availability (Aguirre et al., 2009). Other studies have also observed an
increase in the IRT1 expression in the roots of rapeseed plants treated with HA
extracted from black peat (Jannin et al., 2012). These effects caused by HA of
diverse origin were associated with significant increases in Fe root uptake and
further translocation from roots to shoots (Aguirre et al., 2009; Jannin et al.,
2012). In wheat (strategy II plant species, Marschner, 2012), the root application
of leonardite HA under Fe-limiting conditions was associated with an increase in
the root release of phytosiderophores compared with non-treated Fe-deficient
plants, with this effect being linked to a significant increase in the remobilization
of Fe within the plant (Garnica et al., unpublished results). In addition, the
application of HA extracted from black peat to rapeseed roots increased the
expression of genes encoding COMT2 and NRAMP3, two transporters involved
in transport of Cu, Zn and Mn within the plant (Billard et al., 2014). Hence, HS
improve micronutrient uptake not only by enhancing their availability in the
rhizosphere through complexation, but also by improving the functioning of
nutrient transporters in the global plant nutrient-uptake network system.
Regarding macronutrients, a number of studies have reported a significant
increase in the expression of some nitrate transporters in diverse plant species
(Olaetxea et al., 2018 and references therein). Quaggiotti et al. (2004) observed
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
The effect of soil organic matter on plant mineral nutrition
9
that HA extracted from the earthworm faeces up-regulated the expression of
gene coding for a specific nitrate transporter (ZmNRT2.1) in leaves, but not
roots, of maize. Peat-derived HA applied to rapeseed roots was associated
with up-regulation of both BnNRT1.1 and BnNRT2.1 in roots and an increase in
nitrate uptake (Jannin et al., 2012). More recently, Tavares et al. (2017) reported
the capacity of HA extracted from vermicompost to up-regulate OsNRT2.12.2 and OsNAR2.1 as well as some ATPase isoforms in rice. In maize treated
with water-extracted peat HA, Zanin et al. (2018) also observed significant
up-regulation of these nitrate transporters.
Similar results to those previously discussed in relation to nitrate were
also observed in the case of sulphate in rapeseed plants treated with HA
extracted from peat (Jannin et al., 2012). Root application of HA up-regulated
the expression of sulphate transporters in roots (BnSulftr1.1 and 1.2) as well
as another S transporter involved in sulphate sequestration in shoot vacuoles,
resulting in increased sulphate uptake (Jannin et al., 2012).
The results regarding phosphate are less clear. Vermicompost HA
up-regulated the expression of a phosphate transporter in roots (LPT2) of
tomato plants growing in P-replete medium; however, this effect was not
observed in tomato growing under P deficiency (Jindo et al., 2016).
Regarding K root uptake, a recent study showed that an HA extracted from
terrestrial organic sediments prevented degradation of the high-affinity K+
transporter 1 (HKT1) in Arabidopsis, thus improving plant growth under salinity
(Khaleda et al., 2017).
2.2.3 Effects on the activity of major enzymes
involved in nutrient utilization in plants
Several microarray studies have reported that HS have major effects of the
expression of a large number of genes, and activity of corresponding enzymes,
involved in practically all aspects of plant metabolism, including nutrient
use (Trevisan et al., 2011; Jannin et al., 2012). Significantly increased nitrate
reductase activity was reported in both roots and shoots of rapeseed plants
treated with peat-derived HA (Jannin et al., 2012) and of cucumber plants
treated with HA extracted from leonardite (Mora et al., 2010). Other studies
have reported significant increases in the main enzymes involved in ammonium
metabolism such as glutamine synthetase and glutamate synthase (Conselvan
et al., 2017). These effects on N metabolism were also reflected in changes in
the protein patterns in HA-treated plants (Carletti et al., 2008).
Leonardite-derived HA increased the activity of phosphoenolpyruvate
carboxylase (PEP-carboxylase, an enzyme directly involved in phosphate
availability in the TCA cycle), and up-regulated the gene encoding this enzyme
in cucumber (Lemenager et al., unpublished results).
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
10
The effect of soil organic matter on plant mineral nutrition
Humic acids induced significant variations in the enzymatic network
involved in carbon metabolism (including glycolysis and Krebs cycle) as well as
phenolic synthesis (Conselvan et al., 2017).
2.2.4 Conclusions
The findings discussed previously show that HS act as efficient enhancers of
nutrient uptake by roots and further utilization in plants. These effects result
from the interaction of HS with the root-cell plasma membrane and could
be denoted as the biochemical pathway by which HS improve plant mineral
nutrition. As discussed in the next section, it is plausible that the biochemical
pathway is interconnected at a molecular level with the complexing pathway
occurring in the rhizosphere.
3 A possible signalling crosstalk between the
biochemical and complexing pathways
A number of studies have shown that the plant-growth promoting action of HS
involves the participation of several inter-related signalling pathways (Olaetxea
et al., 2018 and references therein). An increase in shoot growth caused by
leonardite-derived HA was expressed through the IAA- and nitric oxide (NO)dependent signalling pathways (Mora et al., 2014), with root ABA also having
an important role in this process (Olaetxea et al., 2015). Finally, both root PM
H+-ATPase and cytokinins play a crucial role in the regulation of the HA activity
in shoot growth (Olaetxea et al., unpublished results), whereas both root PM H+ATPase and root ABA have a vital role in the HA action in root growth (Olaetxea
et al., unpublished results). It is noteworthy that these two signalling pathways
are regulated, although not exclusively, by IAA (Zandonadi et al., 2010; Mora
et al., 2014).
It is likely that one or more signalling pathways activated by HS may be
involved in the regulation of the effects of HS on nutrient transporters and
enzyme activities. A plausible hypothesis is that HS act through the IAA-H+ATPase pathway because this pathway is associated with the regulation of, and
energy supply to, most nutrient transports (Falhof et al., 2016). However, new
experiments involving IAA- or H+-ATPase-defective mutants, and/or IAA-H+ATPase inhibitors are needed in order to explore this hypothesis.
On the other hand, several studies have revealed a role of some nutrient
transporters influenced by HS as the sensors of nutrient concentrations in the
root medium (Ho and Tsay, 2010). The examples are CHL1/NRT1.1-2.1 for
nitrate (Ho et al., 2009; Vert and Chory, 2009; Gojon et al., 2011) and IRT1
for Fe (II) (Dubeaux et al., 2018), which are known as transceptors. Other
studies indicated that NRT2.1 may affect IAA-dependent processes such as
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
The effect of soil organic matter on plant mineral nutrition
11
lateral root development (Little et al., 2005). Hence, it is plausible that these
transceptors might play a role in regulating the crosstalk between the two
pathways (complexing and biochemical) involved in beneficial activity of HS
in plant mineral nutrition. For example, in plants growing under Fe-limiting
conditions, as in calcareous soils, IRT1 (Fe(II) transporter) may act as a sensor
of Fe concentration in soil solution, with Fe under these soil conditions being
in the form of soluble Fe-HA complexes (the complexing pathway), and trigger
the all-root responses to Fe-limiting conditions that include the processes
involved in the biochemical pathway. In this way, the complexing and the
biochemical pathways will be closely related to each other through IRT1.
Nevertheless, new specifically designed experiments are needed in order to
check this hypothesis.
4 Conclusions
The mechanisms involved in the beneficial action of soil humus, and more
specifically HS, on plant mineral nutrition are multiple, complex and likely
interconnected. We have denoted two main routes: one related to the reaction
between HS and nutrients in soil (complexing pathway) and another linked
to the effects of HS on the molecular and biochemical network involved in
nutrient uptake by roots and further utilization in plants (biochemical pathway).
The two modes of action of HS are directly linked to the structural properties
and functional features of HS.
It is plausible that the two modes of action could be the two sides of a single
and complex mechanism. In this framework, the relative importance of each
pathway is determined by the concentration of HS in soil solution; interestingly,
the concentration needed to cause direct effects in plants (150–300 mg L-1) is
higher than that necessary to increase micronutrient availability (10–50 mg L-1)
(Chen and Aviad, 1990). Thus, in soils with very low concentration of HS in the
soil solution (but with most of metallic micronutrients in the form of soluble
humic complexes) the complexing pathway will be more important than the
biochemical pathway. Conversely, in plants with relatively high HS concentration
in the rhizosphere the biochemical pathway may also be important.
The transceptor role of some nutrient transporters influenced by HS opens
up a possibility of a single general pathway combining the complexing and
biochemical pathways.
5 Acknowledgements
We would like to thank the Regional Government of Navarra, the Government
of Spain, the University of Navarra Research Foundation as well as the Roullier
Group for their support and funding.
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
12
The effect of soil organic matter on plant mineral nutrition
6 Where to look for further information
Further information about the role of HS in plant mineral nutrition and plant growth
can be found in the web page of the International Society of Humic substances
(IHSS) (www.humic-substances.org/). In this site a collection of selected articles
as well as the most relevant published books about humic substances’ structural
features, physico-chemical features and biological activity can be found.
Also the main contacts in different countries can be also found there.
7 References
Aguirre, E., Leménager, D., Bacaicoa, E., Fuentes, M., Baigorri, R., Zamarreño, A. M. and
García-Mina, J. M. 2009. The root application of a purified leonardite humic acid
modifies the transcriptional regulation of the main physiological root responses to
Fe deficiency in Fe-sufficient cucumber plants. Plant Physiol. Biochem. 47(3), 215–23.
doi:10.1016/j.plaphy.2008.11.013.
Baigorri, R., Fuentes, M., Gonzalez-Gaitano, G. and García-Mina, J. M. 2007. Simultaneous
presence of diverse molecular patterns in humic substances in solution. J. Phys.
Chem. B 111(35), 10577–82. doi:10.1021/jp0738154.
Baigorri, R., Urrutia, O., Erro, J., Mandado, M., Perez-Juste, I. and Garcia-Mina, J. M. 2013.
Structural characterization of anion calcium-humate complexes in phosphate-based
fertilizers. ChemSusChem 6(7), 1245–51. doi:10.1002/cssc.201300024.
Billard, V., Etienne, P., Jannin, L., Garnica, M., Cruz, F., Garcia-Mina, J. M., Yvin, J. C. and
Ourry, A. 2014. Two biostimulants derived from algae or humic acid induce similar
responses in the mineral content and gene expression of winter oilseed rape (Brassica
napus L.). J. Plant Growth Regul. 33(2), 305–16. doi:10.1007/s00344-013-9372-2.
Canellas, L. P., Olivares, F. L., Okorokova-Façanha, A. L. and Façanha, A. R. 2002. Humic
acids isolated from earthworm compost enhance root elongation, lateral root
emergence, and plasma membrane H+-ATPase activity in maize roots. Plant Physiol.
130(4), 1951–7. doi:10.1104/pp.007088.
Canellas, L. P., Olivares, F. L., Aguiar, N. O., Jones, D. L., Nebbioso, A., Mazzei, P. and
Piccolo, A. 2015. Humic and fulvic acids as biostimulants in horticulture. Sci. Hortic.
196, 15–27. doi:10.1016/j.scienta.2015.09.013.
Cao, X. and Schmidt-Rorh, K. 2018. Abundant nonprotonated aromatic and oxygenbonded carbons make humic substances distinct from biopolymers. Environ. Sci.
Technol. Lett. 5(8), 476–80. doi:10.1021/acs.estlett.8b00107.
Carletti, P., Masi, A., Spolaore, B., De Laureto, P. P., De Zorzi, M., Turetta, L., Ferretti, M.
and Nardi, S. 2008. Protein expression changes in maize roots in response to humic
substances. J. Chem. Ecol. 34(6), 804–18. doi:10.1007/s10886-008-9477-4.
Chen, Y. and Aviad, T. 1990. Effects of humic substances on plant growth. In: MacCarthy,
P., Clapp, C. E., Malcolm, R. L. and Bloom, P. R. (Eds), Humic Substances in Soil and
Crop Sciences: Selected Readings. American Society of Agronomy, Madison, pp.
161–86.
Chen, Y., De Nobili, M. and Aviad, T. 2004a. Stimulatory effects of humic substances on
plant growth. In: Magdoff, F. and Weil, R. R. (Eds), Soil Organic Matter in Sustainable
Agriculture. CRC Press, New York, pp. 103–30.
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
The effect of soil organic matter on plant mineral nutrition
13
Chen, Y., Clapp, C. E. and Magen, H. 2004b. Mechanisms of plant growth stimulation
by humic substances: the role of organo-iron complexes. Soil Sci. Plant Nutr. 50(7),
1089–95. doi:10.1080/00380768.2004.10408579.
Conselvan, G. B., Pizzeghello, D.,Francioso, O., Di Foggia, M., Nardi, S. and Carletti, P.
2017. Biostimulant activity of humic substances extracted from leonardites. Plant
Soil 420(1–2), 119–34. doi:10.1007/s11104-017-3373-z.
Dubeaux, G., Neveu, J., Zelazny, E. and Vert, G. 2018. Metal sensing by the IRT1 transporterreceptor orchestrates its own degradation and plant metal nutrition. Mol. Cell 69(6),
953–964.e5. doi:10.1016/j.molcel.2018.02.009.
Erro, J., Urrutia, O., Francisco, S. S. and Garcia-Mina, J. M. 2007. Development and
agronomical validation of new fertilizer compositions of high bioavailability and
reduced potential nutrient losses. J. Agric. Food Chem. 55(19), 7831–9. doi:10.1021/
jf0708490.
Erro, J., Zamarreno, A. M., Garcia-Mina, J. M. and Yvin, J. C. 2009. Comparison of different
phosphorus-fertiliser matrices to induce the recovery of phosphorus-deficient maize
plants. J. Sci. Food Agric. 89(6), 927–34. doi:10.1002/jsfa.3530.
Erro, J., Urrutia, O., Baigorri, R., Aparicio-Tejo, P., Irigoyen, I., Torino, F., Mandado, M.,
Yvin, J. C. and Garcia-Mina, J. M. 2012. Organic complexed superphosphates (CSP):
physicochemical characterization and agronomical properties. J. Agric. Food Chem.
60(8), 2008–17. doi:10.1021/jf204821j.
Falhof, J., Pedersen, J. T., Fuglsang, A. T. and Palmgren, M. 2016. Plasma membrane
H+-ATPase regulation in the center of plant physiology. Mol. Plant 9(3), 323–37.
doi:10.1016/j.molp.2015.11.002.
Fuentes, M., Olaetxea, M., Baigorri, R., Zamarreño, A. M., Etienne, P., Laîné, P., Ourry, A.,
Yvin, J.-C. and Garcia-Mina, J. M. 2013. Main binding sites involved in Fe(III) and Cu(II)
complexation in humic-based structures. J. Geochem. Exp. 129, 14–7. doi:10.1016/j.
gexplo.2012.12.015.
García, A. C., de Souza, L. G. A., Pereira, M. G., Castro, R. N., García-Mina, J. M., Zonta,
E., Lisboa, F. J. and Berbara, R. L. L. 2016. Structure-property-function relationship
in humic substances to explain the biological activity in plants. Sci. Rep. 6, 20798.
doi:10.1038/srep20798.
Garcia-Mina, J. M. 2006. Stability, solubility and maximum metal binding capacity in metal–
humic complexes involving humic substances extracted from peat and organic
compost. Org. Geochem. 37(12), 1960–72. doi:10.1016/j.orggeochem.2006.07.027.
Garcia-Mina, J. M. 2007. Advantages and limitations of the use of an extended
polyelectrolyte model to describe the proton-binding process in macromolecular
systems: application to a poly(acrylic acid) and a humic acid. J. Phys. Chem. B
111(17), 4488–94. doi:10.1021/jp0689518.
Garcia-Mina, J. M., Antolin, M. C. and Sanchez-Diaz, M. 2004. Metal-humic
complexes and plant micronutrient uptake: a study based on different
plant species cultivated in diverse soil types. Plant Soil 258(1), 57–68.
doi:10.1023/B:PLSO.0000016509.56780.40.
Geering, H. R., Hodgson, J. F. and Sdano, C. 1969. Micronutrient cation complexes in soil
solution: IV. The chemical state of manganese in soil solution. Soil Sci. Soc. Am. Proc.
33(1), 81–5. doi:10.2136/sssaj1969.03615995003300010023x.
Gerke, J. 2010. Humic (organic matter)-Al(Fe)-phosphate complexes: an underestimated
phosphate form in soils and source of plant-available phosphate. Soil Sci. 175(9),
417–25. doi:10.1097/SS.0b013e3181f1b4dd.
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
14
The effect of soil organic matter on plant mineral nutrition
Gojon, A., Krouk, G., Perrine-Walker, F. and Laugier, E. 2011. Nitrate transceptor(s) in
plants. J. Exp. Bot. 62(7), 2299–308. doi:10.1093/jxb/erq419.
Guardado, I., Urrutia, O. and Garcia-Mina, J. M. 2005. Methodological approach to
the study of the formation and physicochemical properties of phosphate–metal–
humic complexes in solution. J. Agric. Food Chem. 53(22), 8673–8. doi:10.1021/
jf052031p.
Guardado, I., Urrutia, O. and Garcia-Mina, J. M. 2007. Size distribution, complexing
capacity and stability of phosphate–metal–humic complexes. J. Agric. Food Chem.
55(2), 408–13. doi:10.1021/jf062894y.
Guardado, I., Urrutia, O. and Garcia-Mina, J. M. 2008. Some structural and electronic
features of the interaction of phosphate with metal–humic complexes. J. Agric. Food
Chem. 56(3), 1035–42. doi:10.1021/jf072641k.
Ho, C. H. and Tsay, Y. F. 2010. Nitrate, ammonium, and potassium sensing and signaling.
Curr. Opin. Plant Biol. 13(5), 604–10. doi:10.1016/j.pbi.2010.08.005.
Ho, C. H., Lin, S. H., Hu, H. C. and Tsay, Y. F. 2009. CHL1 functions as a nitrate sensor in
plants. Cell 138(6), 1184–94. doi:10.1016/j.cell.2009.07.004.
Jannin, L., Arkoun, M., Ourry, A., Laîné, P., Goux, D., Garnica, M., Fuentes, M., Francisco,
S. S., Baigorri, R., Cruz, F., Houdusse, F., Garcia-Mina, J. M., Yvin, J.-C. and Etienne,
P. 2012. Microarray analysis of humic acid effects on Brassica napus growth:
involvement of N, C and S metabolisms. Plant Soil 359(1–2), 297–319. doi:10.1007/
s11104-012-1191-x.
Jindo, K., Soares, T. S., Peres, L. E. P., Azevedo, I. G., Aguiar, N. O., Mazzei, P., Spaccini,
R., Piccolo, A., Olivares, F. L. and Canellas, L. P. 2016. Phosphorus speciation and
high-affinity transporters are influenced by humic substances. J. Plant Nutr. Soil Sci.
179(2), 206–14. doi:10.1002/jpln.201500228.
Khaleda, L., Jin Park, H. J.,Yun, D. J., Jeon, J. R., Kim, M. G., Cha, J. Y. and Kim, W. Y. 2017.
Humic acid confers HIGH-AFFINITY K+ Transporter 1-mediated salinity stress tolerance
in Arabidopsis. Mol. Cells 40(12), 966–75. doi:10.14348/molcells.2017.0229.
Lehmann, J. and Kleber, M. 2015. The contentious nature of soil organic matter. Nature
528(7580), 60–8. doi:10.1038/nature16069.
Little, D. Y., Rao, H., Oliva, S., Daniel-Vedele, F., Krapp, A. and Malamy, J. E. 2005. The
putative high-affinity nitrate transporter NRT2.1 represses lateral root initiation
in response to nutritional cues. Proc. Natl. Acad. Sci. U. S. A. 102(38), 13693–8.
doi:10.1073/pnas.0504219102.
Magdoff, F. and Weil, R. R. 2004. Soil Organic Matter in Sustainable Agriculture. CRC Press,
New York.
Marschner, P. 2012. Marschner’s Mineral Nutrition of Higher Plants (3rd edn.). Elsevier
Academic Press, Amsterdam.
Mora, V., Bacaicoa, E., Zamarreno, A. M., Aguirre, E., Garnica, M., Fuentes, M. and GarciaMina, J. M. 2010. Action of humic acid on promotion of cucumber shoot growth
involves nitrate-related changes associated with the root-to-shoot distribution
of cytokinins, polyamines and mineral nutrients. J. Plant Physiol. 167(8), 633–42.
doi:10.1016/j.jplph.2009.11.018.
Mora, V., Bacaicoa, E., Baigorri, R., Zamarreño, A. M. and Garcia-Mina, J. M. 2014. NO and
IAA key regulators in the shoot growth promoting action of humic acid in Cucumis
sativus L. J. Plant Growth Regul. 33(2), 430–9. doi:10.1007/s00344-013-9394-9.
Mortvedt, J. J., Cox, F. R., Shuman, L. M.. and Welch, R. M. 1991. Micronutrients in
Agriculture. Soil Science Society of America, Madison.
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
The effect of soil organic matter on plant mineral nutrition
15
Nardi, S., Pizzeghello, D., Muscolo, A. and Vianello, A. 2002. Physiological effects of humic
substances on higher plants. Soil Biol. Biochem. 34(11), 1527–36. doi:10.1016/
S0038-0717(02)00174-8.
Olaetxea, M., Mora, V., Bacaicoa, E., Garnica, M., Fuentes, M., Casanova, E., Zamarreño, A.
M., Iriarte, J. C., Etayo, D., Ederra, I., Gonzalo, R., Baigorri, R. and García-Mina, J. M.
2015. Abscisic acid regulation of root hydraulic conductivity and aquaporin gene
expression is crucial to the plant shoot growth enhancement caused by rhizosphere
humic acids. Plant Physiol. 169(4), 2587–96. doi:10.1104/pp.15.00596.
Olaetxea, M., De Hita, D., Garcia, C. A., Fuentes, M., Baigorri, R., Mora, V., Garnica, M.,
Urrutia, O., Erro, J., Zamarreño, A. M., Berbara, R. L. and Garcia-Mina, J. M. 2018.
Hypothetical framework integrating the main mechanisms involved in the promoting
action of rhizospheric humic substances on plant root and shoot growth. Appl. Soil
Ecol. 123, 521–37. doi:10.1016/j.apsoil.2017.06.007.
Perminova, I. V., Shirshin, E. A., Konstantinov, A. I., Zherebker, A., Lebedev, V. A.,
Dubinenkov, I. V., Kulikova, N. A., Nikolaev, E. N., Bulygina, E. and Holmes, R. M.
2018. The structural arrangement and relative abundance of aliphatic units
may effect long-wave absorbance of natural organic matter as revealed by 1H
NMR spectroscopy. Environ. Sci. Technol. 52(21), 12526–37. doi:10.1021/acs.
est.8b01029.
Piccolo, A. 2002. The supramolecular structure of humic substances: a novel
understanding of humus chemistry and implications in soil science. Adv. Agron. 75,
57–134. doi:10.1016/S0065-2113(02)75003-7.
Pinton, R., Cesco, S., Iacolettig, G., Astolfi, S. and Varinini, Z. 1999. Modulation of NO3
uptake by water-extractable humic substances: involvement of root plasma
membrane H+ ATPase. Plant Soil 215(2), 155–61. doi:10.1023/A:1004752531903.
Quaggiotti, S., Ruperti, B., Pizzeghello, D., Francioso, O., Tugnoli, V. and Nardi, S. 2004.
Effect of low molecular size humic substances on nitrate uptake and expression of
genes involved in nitrate transport in maize (Zea mays L.). J. Exp. Bot. 55(398), 803–
13. doi:10.1093/jxb/erh085.
Rose, M. T., Patti, A. F., Little, K. R., Brown, A. L., Jackson, W. R. and Cavagnaro, T. R. 2014.
A meta-analysis and review of plant-growth response to humic substances: practical
implications for agriculture. Adv. Agron. 124, 37–89.
Senesi, N. 1992. Metal-humic substance complexes in the environment. Molecular and
mechanistic aspects by multiple spectroscopic approach. In: Adriano, D. M. (Ed.),
Biogeochemistry of Trace Metals. Lewis Publishers, Boca Raton, pp. 429–95.
Stevenson, F. J. 1994. Humus Chemistry. Genesis, Composition, Reactions (2nd edn.).
Wiley, New York.
Tavares, O. C. H., Santos, L. A., Ferreira, L. M., Sperandio, M. V. L., da Rocha, J. G., Garcia, A.
C., Dobbss, L. B., Berbara, R. L. L., de Souza, S. R. and Fernandes, M. S. 2017. Humic
acid differentially improves nitrate kinetics under low and high-affinity systems and
alters the expression of plasma membrane H+-ATPases and nitrate transporters in
rice. Ann. App. Biol. 170(1), 89–103. doi:10.1111/aab.12317.
Tipping, E. 2002. Cation binding by humic substances. Cambridge Environmental
Chemistry Series 12. Cambridge University Press, Cambridge.
Trevisan, S., Botton, A., Vaccaro, S., Vezzaroa, A., Quaggiotti, S. and Nardi, S. 2011. Humic
substances affect Arabidopsis physiology by altering the expression of genes
involved in primary metabolism, growth and development. Environ. Exp. Bot. 74,
45–55. doi:10.1016/j.envexpbot.2011.04.017.
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
16
The effect of soil organic matter on plant mineral nutrition
Urrutia, O., Erro, J., Guardado, I., Mandado, M. and Garcia-Mina, J. M. 2013. Theoretical
chemical characterization of phospho-metal-humic complexes and relationships
with their effects on both phosphorus soil fixation and phosphorus availability for
plants. J. Sci. Food Agric. 93, 293–303.
Urrutia, O., Erro, J., Guardado, I., San Francisco, S., Mandado, M., Baigorri, R., Claude
Yvin, J. and Ma Garcia-Mina, J. 2014. Physico-chemical characterization of humicmetal-phosphate complexes and their potential application to the manufacture
of new types of phosphate-based fertilizers. J. Plant Nutr. Soil Sci. 177(2), 128–36.
doi:10.1002/jpln.201200651.
Vert, G. and Chory, J. 2009. A toggle switch in plant nitrate uptake. Cell 138(6), 1064–6.
doi:10.1016/j.cell.2009.09.005.
Wershaw, R. L. 1993. Model for humus in soils and sediments. Environ. Sci. Technol. 27(5),
814–6. doi:10.1021/es00042a603.
Zandonadi, D. B., Canellas, L. P. and Façanha, A. R. 2007. Indoleacetic and humic acids
induce lateral root development through a concerted plasmalemma and tonoplast
H+ pumps activation. Planta 225(6), 1583–95. doi:10.1007/s00425-006-0454-2.
Zandonadi, D. B., Santos, M. P., Dobbss, L. B., Olivares, F. L., Canellas, L. P., Binzel, M.
L., Okorokova-Façanha, A. L. and Façanha, A. R. 2010. Nitric oxide mediates humic
acids induced root development and plasma membrane H+-ATPase activation.
Planta 231(5), 1025–36. doi:10.1007/s00425-010-1106-0.
Zanin, L., Tomasi, N., Zamboni, A., Sega, D., Varanini, Z. and Pinton, R. 2018. Waterextractable humic substances speed up transcriptional response of maize roots to
nitrate. Environ. Exp. Bot. 147, 167–78. doi:10.1016/j.envexpbot.2017.12.014.
© Burleigh Dodds Science Publishing Limited, 2020. All rights reserved.
View publication stats
Download