NAME: SUBJECT: GENERAL BIOLOGY 1 WEEK 3 Module 3 SECTION: Aerobic and Anaerobic Respiration What I Need to Know In module 2, you have learned about the patterns of electron flow through light reactions events. You also learned about the significant events of the Calvin cycle. In this module, you will learn how to differentiate aerobic from anaerobic respiration. Glycolysis, Kreb’s cycle, and Electron Transport Chain (ETC) will also be discussed as the sequence of cellular respiration. After going through this module, you are expected to: 1. Differentiate aerobic from anaerobic respiration, and (STEM_BIO11/12-IIa-j-6) 2. Explain the major features and sequence the chemical events of cellular respiration (STEM_BIO11/12-IIa-j-7). Cellular respiration is a set of metabolic reactions and processes that takes place in the cells of an organisms to convert chemical energy from oxygen molecules or nutrients into ATP and released waste product. There are two types of respiration: the aerobic respiration and anaerobic respiration. While aerobic respiration is a process that requires oxygen, on the other hand, anaerobic respiration, oxygen is not required. Aerobic and anaerobic respiration differ in terms of the amount of energy that is produced. Anaerobic respiration produces less energy when compared with the process of aerobic respiration. We all need energy to function and we get this energy from the foods we eat. The most efficient way for cells to harvest energy stored in food is through cellular respiration, a catabolic pathway for the production of adenosine triphosphate (ATP). ATP a high energy molecule, is expended by working cells. Cellular respiration occurs in both eukaryotic and prokaryotic cells. It has three main stages: glycolysis, the citric acid cycle, and electron transport What’s New Now that you have remembered about the two stages of photosynthesis which are the light reaction and dark reaction which also known as Calvin Cycle. Perform the activity below. Score: ___/ 10 ACTIVITY 1: Show me the Difference! Directions: Fill in the table below with the correct answer in the column provided. Write the letter only. Aerobic Anaerobic 1. 6. 2. 7. 3. 8. 4. 9. 5. 10. A. B. C. D. E. F. G. H. I. J. Maximum yield of 36 to 38 ATP molecules per glucose Rapid breakdown of glucose Cause burning sensation in the muscle during strenuous exercise (in fermentation) Brain cells in the human body can only live aerobically. They die if molecular oxygen is absent Outputs are carbon dioxide, water and ATP Electrons in NADH are transferred to electron transport chain O2 is the final electron acceptor of the electron transport system Single metabolic pathway (in fermentation Pyruvate proceeds to acetyl formation in the mitochondrion Cause burning sensation in the muscle during strenuous exercise (in fermentation) What Is It Aerobic respiration takes place in almost all living things. Some organisms can respire in absence of air. There are a number of fermentations pathways that different cells used; yeast cells produced ethyl alcohol by fermentation. Certain cells of our body, namely muscles cells, used lactic acid fermentation. Depending on the organism, some of the other products of fermentation includes acetic acid, formic acid, acetone and isopropyl alcohol. In plain language, anaerobic means where there is no air and thus anaerobic respiration is a term used for the respiration that occurs without the use of oxygen. In this process, the molecules carry oxidation, when oxygen is absent. This results in the production of energy or ATP. This type of respiration is also equivalent to fermentation when energy production path (Glycolytic pathway) is functioning in one cell. There are two processes of this type of respiration alcoholic fermentation, where the Glucose is broken down and produces Energy (ATP), Ethanol and Carbon Dioxide; Lactate fermentation where Glucose breaks down into Energy and Lactic Acid (e.g. soreness of muscles after exercise). AEROBIC RESPIRATION ANAEROBIC RESPIRATION How alike? Both undergo glycolysis in the cytoplasm of the cell Both undergo substrate-level phosphorylation and oxidative phosphorylation and chemiosmosis in producing ATP molecules Both split the 6-carbon glucose into two molecules of pyruvate, the three-carbon molecule Both involve a series of enzyme-controlled reactions that take place in the cytoplasm Both use NAD+ (nicotinamide adenine dinucleotide), a redox coenzyme that accepts two electrons plus a hydrogen (H+) that becomes NADH Both performed by eukaryotic and prokaryotic cells AEROBIC RESPIRATION ANAEROBIC RESPIRATION How different? Maximum yield of 36 to 38 ATP molecules per glucose maximum yield of 2 ATP molecules per glucose for obligate anaerobes Complete breakdown of glucose to carbon dioxide and water with the use of oxygen Partial degradation of glucose without the use of oxygen (obligate anaerobes) Multiple metabolic pathways Single metabolic pathway (in fermentation Pyruvate proceeds to acetyl formation in the mitochondrion Pyruvate is broken down to ethanol and carbon dioxide or lactate (in fermentation) The presence of enough oxygen in the cell makes the cell perform its job smoothly without burning sensation Cause burning sensation in the muscle during strenuous exercise (in fermentation) More efficient in harvesting energy from glucose with estimated 39% energy efficiency (36-38 ATP) in eukaryotic organisms but much higher ATP production (38 to 40 ATP) in prokaryotic organisms Less efficient in harvesting energy from glucose with 2% energy efficiency (for obligate anaerobes) Outputs are carbon dioxide, water and ATP Outputs are lactate, alcohol and carbon dioxide (in fermentation); but reduced inorganic compound in anaerobic respiration Products produce are for biochemical cycling and for the cellular processes that require energy Produce numerous products with economic and industrial importance through fermentation Slow glucose breakdown Rapid breakdown of glucose Electrons in NADH are transferred to electron transport chain Electrons in NADH are transferred to electron transport chain; but in fermentation electrons in NADH are transferred to organic molecule fermentation electrons in NADH are transferred to organic molecule Mechanism of ATP synthesis is by substrate-level and oxidative phosphorylation/chemiosmosis Mechanism of ATP synthesis is by substrate-level and oxidative phosphorylation/chemiosmosis; but in fermentation substrate-level phosphorylation only during glycolysis O2 is the final electron acceptor of the electron transport system In anaerobic respiration, inorganic substances like NO3- or SO42- are the final acceptor of the electron transport system; but in fermentation, there is no electron acceptor because it has no electron transport system Brain cells in the human body can only live aerobically. They die if molecular oxygen is absent Some organisms like yeasts (eukaryotic), many bacteria (prokaryotic) and the human muscle cells (eukaryotic) can make enough ATP to survive in facultative anaerobes (can live in the absence or presence of oxygen). But under anaerobic conditions lactic acid fermentation occurs. A facultative anaerobe needs to consume the nutrient at a much faster rate when doing the fermentation or anaerobic process. The process of anaerobic respiration yields relatively less energy as compared to aerobic respiration. The process of anaerobic respiration for production of energy can occur in either of the following: A.) alcoholic fermentation wherein glucose is broken down to ATP, ethanol and carbon dioxide, B.) lactic acid fermentation wherein glucose is broken down to ATP and lactic acid. Alcoholic Fermentation Types of Anaerobic Respiration Lactic Acid Fermentation Starts with Glycolysis Starts with Glycolysis Occurs in Yeast, plants and one-celled organism Occurs in animal muscle cells and some onecelled organisms Produces 2 ATP and ethyl alcohol Produces 2 ATP and lactic acid Produces soreness when it builds In your muscles Alcoholic Fermentation enzymes Glucose Lactic Acid Fermentation enzymes Glucose carbon dioxide + alcohol + energy lactic acid + energy Sequence of Cellular Respiration Glycolysis Glycolysis begins with the six-carbon ring-shaped structure of a single glucose molecule and ends with two molecules of a three-carbon sugar called pyruvate. Glycolysis consists of two distinct phases. The first part of the glycolysis pathway traps the glucose molecule in the cell and uses energy to modify it so that the six-carbon molecules. The second part of glycolysis extracts energy for the molecules and stores it in the form of ATP and NADH, the reduced form of NAD +. The breakdown of the six-carbon glucose into two molecules of the three-carbon pyruvate occurs in ten steps, the first five of which constitute the preparatory phase (Fig. 1). Note that two molecules of ATP are invested before the cleavage of glucose into two three-carbon pieces; later there will be a good return on this investment. Step 1. The first step in glycolysis is catalyzed by hexokinase, an enzyme with broad specificity that catalyzes the phosphorylation of six-carbon sugar. Hexokinase phosphorylates glucose uses ATP as the source of the phosphate, and produces glucose-6-phosphate, a more reactive form of glucose. Step 2. The enzyme isomerase converts glucose 6-phosphate into one of its isomers, fructose-6phosphate. An isomerase catalyzes the conversion of molecule into one of its isomer. Step 3. The third step is the phosphorylation of fructose-6-phosphate, catalyzes by the enzyme phosphofructokinase. A second ATP molecule donates a high energy phosphate to fructos-6phosphate, producing fructose-1,6-biphosphate. Step 4. The newly added high-energy phosphates further destabilize fructose-1,6-biphosphate. This step employs an enzyme, aldolase, to cleave 1,6-biphosphate into three-carbon isomer: dihydroxyacetone-phosphate and glyceraldehyde-3phosphate. Step 5. An isomerase transforms the dihydroxyacetone-phosphate into its isomer, glycerlaldehyde3-phosphate. Thus, the pathway will continue with two molecules of a single isomer. At this point in the pathway, there is a net investment of energy from two ATP molecules breakdown of one glucose molecule. Image taken from General Biology TG. Pay Off Stage Figure 1. Stages of Glycolysis So far, glycolysis has cost the cell two ATP molecules produced two small, three-carbon sugar molecules. Both of these molecules will proceed through the second half of the pathway, and sufficient energy will be extracted to pay back the two ATP molecules used as an initial investment and produce a profit for the cell of two additional ATP molecules and two even higher-energy NADH molecules. The energy gain comes in the payoff phase of glycolysis. Step 6. The sixth step in glycolysis oxidizes the sugar (glyceraldehyde-3-phosphate), extracting high energy electrons, which are picked up by the electron carrier NAD+, producing NADH. The sugar is then phosphorylated by the addition of a second phosphate group, producing 1,3biphosphoglycerate. Step 7. In this seventh step, catalyzed by phosphoglycerate kinase, 1,3-biphosphoglycerate donates a high energy phosphate to ADP, forming one molecule of ATP. A carbonyl group on the 1,3-biphosphoglycerate is oxidized to a carbonyl group, and 3-phosphoglycerate is formed. Step 8. The remaining phosphate group in 3-phosphoglycerate moves from the third carbon to the second carbon, producing 2-phosphoglycerate (an isomer of 3-phosphoglycerate). The enzyme catalyzing this step is a mutase (isomerase). Step 9. Enolase catalyzes the ninth step. This enzyme causes 2-phosphoglycerate to lose water from its structure; this is a dehydration reaction, resulting int the formation of a double bond and produces phosphoenolpyruvate (PEP). Step 10. The last step in glycolysis is catalyzed by the enzyme pyruvate kinase (the enzyme in this case is named for the reverse reaction of pyruvate’s conversion into PEP) and results in the production of a second ATP molecule by substrate phosphorylation and the compound pyruvic acid (or its salt form, pyruvate). Citric Acid Cycle or Krebs Cycle If oxygen is available, aerobic respiration will go forward. In eukaryotic cells, the pyruvate molecules produced at the end of glycolysis are transported into mitochondria, which are the next site for cellular respiration. There, pyruvate will be transformed into an acetyl group that will be picked up and activated by a carrier compound called coenzyme A (CoA). CoA is made from vitamin B5, pantothenic acid. Acetyl CoA can be used in a variety of ways by the cell, but its major function is to deliver the acetyl group derived from pyruvate to the next stage of the pathway in glucose catabolism. Like the conversion of pyruvate to acetyl CoA, the citric acid cycle or Krebs cycle takes place in the matrix of mitochondria. Almost all of the enzymes of the citric acid cycle are soluble, with the single exception of the enzyme succinate dehydrogenase, which is embedded in the inner membrane of the mitochondrion. Unlike glycolysis, the citric acid cycle is a close loop. The last part of the pathway regenerates the compound used in the first step. The eight steps of the cycle are a series of redox, dehydration, and decarboxylation reactions that produce two carbon dioxide molecules, one GTP/ATP and reduce forms of NADH and FADH2. Image taken from Lehninger’s Principle of Biochemistry Figure 2. The Citric Acid Cycle or Kreb’s Cycle Step 1. Prior to the start of the first step, a transitional phase occurs during which pyruvic acid is converted to acetyl CoA. Then, the first step of the cycle begins. This is the condensations step, combining the two-carbon acetyl group with a fourcarbon oxoacetate molecule to form a six-carbon molecule of citrate. CoA is bound to a sulfhydryl group (-SH) and diffuses away to eventually combine with another acetyl group. This step is irreversible because it is highly exergonic. The rate of this reaction is controlled by negative feedback and the amount of the ATP available. If ATP levels increase, the rate of this reaction decreases. If ATP is in short supply, the rate increases. Step 2. The citrate loses one water molecule and gains another as citrate is converted into its isomer, isocitrate. Step 3. The isocitrate is oxidized, producing a five-carbon molecule, a-ketoglutarate, together with a molecule of CO2 and two electrons, which reduce NAD+ to NADH. This is the step is also regulated by negative feedback from ATP and NADH, and a positive effect of ADP. Step 3 and 4. These steps are both oxidation and decarboxylation steps, which release electrons that reduce NAD+ to NADH and release carboxyl group that forms CO2 molecules. A-ketoglutarate is the products of step three, and a succinyl CoA. The enzymes that catalyzes step four is regulated by feedback inhibition of ATP, succinyl CoA, and NADH. In step 5, a phosphate group is substituted for coenzyme A, and a high-energy bond is formed. This energy is used in substrate-level phosphorylation to form either guanosine triphosphate (GTP) or ATP. There are two forms of the enzymes, called isoenzyme, for this step, depending upon the type of animal tissue in which they are found. Step 6. this is a dehydration process converts succinate into fumarate. Two hydrogen atoms are transferred to FAD, producing FADH2. The energy contains in the electrons in these atoms are insufficient to reduce NAD+ but adequate to reduce FAD. Unlike NADH, this carrier remains attached to the enzyme and transfers to the electrons of the electron transport chain directly. This process is made possible by the localization of the enzyme catalyzing this step inside the inner membrane of the mitochondrion. Step 7. Water is added to fumarate during this step and malate is produced. Step 8. The last step in the citric cycle regenerates oxaloacetate by oxidizing malate. Another molecule of NADH is produced in the process. Electron Transport Chain The electron transport chain is the last component of aerobic respiration and is the only part of glucose metabolism that uses atmospheric oxygen. Oxygen continuously diffuses into plants, in animals, it enters the body through the respiratory system. Electron transport is a series of redox reaction that resembles a relay race or bucket brigade in that electrons are passed rapidly from one component to the next, to the endpoint of the chain where the electrons reduce molecular oxygen, producing water. The electron transport chain is present in multiple copies in the inner mitochondrial membrane of eukaryotes and the plasma membrane of prokaryotes. Image taken from https://images.ap p.goo.gl/1obFTZ2 WpHCec35t9 Figure 4. The Electron Transport Chain Complex I To start, two electrons are carried to the first complex aboard NADH. This complex called NADH dehydrogenase complex, labeled I, is composed of flavin mononucleotide (FMN) and an ironsulfur (Fe-S)-containing protein. The enzyme in complex I is NADH dehydrogenase ad is very large protein containing 45 polypeptide chains. Complex I accepts electrons from NADH, passing them to ubiquinone via FMN and Fe-S centers. It can pump four hydrogen ions across the membrane from the matrix into the intermembrane space, and it is in this way that the hydrogen ion gradient is established and maintained between the two compartments separated by the inner mitochondrial membrane. Q and Complex II Complex II directly receives electrons from FADH2, which does not pass through complex I. The compound connecting the first and second complexes to the third is ubiquinone (Q). Q receives the electrons derived from NADH from complex I and the electrons derived from FADH2, from complex II, including succinate dehydrogenase. The number of ATP molecules ultimately obtained is directly proportional to the number of protons pumped across the inner mitochondrial membrane. Complex III The third complex is composed of cytochrome b, another Fe-S protein, Rieske center (2Fe2S center), and cytochrome c proteins; this complex also called cytochrome oxidoreductase (cytochrome b-c complex). This complex receives electrons from ubiquinone (Q), passing them on to cytochrome c which carries electron to complex IV (cytochrome oxidase complex). Complex III pumps proton through the membrane and passes its electrons to cytochrome c for transport to the fourth complex of proteins and enzymes. Complex IV The fourth complex is composed of cytochrome proteins c, d, and a. This complex contains heme groups and three copper ions. The cytochromes hold an oxygen molecule very tightly between the iron and copper ions until oxygen is completely reduced. The reduced oxygen then picks up two hydrogen ions from the surrounding medium to make water. The removal of hydrogen ions from the mitochondrial matrix contributes to the ion gradient used in the process of chemiosmosis. Chemiosmosis In chemiosmosis, the free energy from the series of redox reactions just described, is to used pump hydrogen ions (protons) across the membrane. The uneven distribution of H+ ions across the inner mitochondrial membrane establishes both concentration and electrical gradients (thus, an electrochemical gradient), owing to the hydrogen ions’ positive charge and their aggregation on one side of the membrane. If the membrane were open to the diffusion by the hydrogen ions, the ions would tend to diffuse back across into the intermembrane, driven by their electrochemical gradient. Chemiosmosis is used to generate 90% of the ATP made during aerobic glucose catabolism; it is also the method used in the light reactions of photosynthesis to harnessed the energy of sunlight in the process of phosphorylation. The production of ATP using the process of chemiosmosis in mitochondria is called oxidative phosphorylation. The overall result of these reactions is the production of ATP from the energy of the electrons removed from hydrogen atoms. These atoms were originally part of glucose molecule. At the end of the pathway, the electrons are used to reduced an oxygen molecule to oxygen ions. The extra electrons on the oxygen attract hydrogen ions (protons) from the surrounding medium, and water is formed. Image taken from p.goo.gl/Q7kx9V https://images.ap RJiQ69jPAj9 Figure 5. ATP Synthase What I Have Learned ACTIVITY 2: Venn Diagram Directions: Compare aerobic and anaerobic respiration by accomplishing the Venn diagram below. Write the letters only. . A. Pyruvate proceeds to acetyl formation in the mitochondrion G. Cause burning sensation in the muscles during strenuous exercise B. Rapid breakdown of glucose H. Both undergo glycolysis in the cytoplasm of the cell. C. Outputs are lactate, alcohol and carbon dioxide. I. Products produce are for biochemical cycling and for the cellular processes that require energy. D. Both performed by eukaryotic and prokaryotic cells. J. Multiple metabolic pathways E. Outputs are carbon dioxide, water and ATP K. Produce numerous products for economic and industrial importance through fermentation F. Single metabolic pathway (in fermentation) L. Both split the 6-carbon glucose into two molecules of pyruvate, the three-carbon molecule. PERFORMANCE ACTIVITY: Gas Production. Fermentation is a metabolic process that convert sugar to acids, gasses, and or alcohol. It occurs in yeast, bacteria, and other microorganism as well as oxygen starved muscle cells. Directions: Perform the activity below to understand further the lesson on fermentation. Take a picture of the steps as you perform the activity. Print the pictures and submit together with the module. Objective: To be able to produce carbon dioxide. Materials: • 4 plastic/gas bottles • 4 balloons • Sugar • Cup • Yeast • 1 tablespoon Procedure: 1. Label the 4 bottles from 1 to 4. 2. Add 1 tablespoon of yeast in each bottles 3. Add no sugar in bottle 1, add ½ tablespoon of sugar in bottle 2, 1 tablespoon in bottle 3, and 1 ½ tablespoon in bottle 4 4. Add 1 cup of warm water in each bottle 5. With all the ingredients in each bottle gently shake the mixtures. 6. Cover the bottles using the balloon and observe for few hours. Guide Questions: Encircle only the letters 1. Which of the 4 bottles produced large amount of gas? 2. How do you know that this bottle produces large amount of gas? 3. What is your implication in doing the activity? Assessment Directions. Choose the letter of your choice and write it on the space provided. ___1. Which of the following organelles present in the cell is associated with cellular respiration? A. Chloroplast B. mitochondrion C. endoplasmic reticulum D. nucleus ___2. During aerobic respiration, which of the following directly donates electrons to the electron transport chain at the lowest energy level? A. NAD+ B. NADH C. ATP D. FADH2 ___3. How many ATP molecules are used up during glycolysis? A. 1 B. 2 C. 3 D. 4 ___4. The primary role of oxygen in cellular respiration is to A. yield energy in the form of ATP as it passed down the respiratory chain B. Act as an acceptor for electrons and hydrogen, forming water C. combine with carbon, forming CO2 D. combine with lactate, forming pyruvate ___5. Which metabolic pathway is common to both cellular respiration and fermentation? A. the oxidation of pyruvate to acetyl CoA B. the citric acid cycle C. oxidative phosphorylation D. glycolysis ___6. It is the first step in cellular respiration that begins releasing energy stored in glucose. A. Glycolysis B. Krebs Cycle C. ETC D. Chemiosmosis ___7. If oxygen is NOT present, glycolysis is followed by _____________________ A. Krebs cycle B. ETC C. Calvin cycle C. Fermentation ___8. What is the products of glycolysis? A. Carbon dioxide B. FAD and NAD C. Pyruvic acid D. Lactate ___9. What are the products of Electron Transport Chain? A. Glucose and oxygen B. ATP and water C. Lactic acid D. Oxygen and ATP ___10. What types of respiration does not require oxygen? A. Aerobic B. Anaerobic C. Glycolysis D. Krebs cycle ___11. Lactic acid fermentation occurs in your muscles after a workout because your cells are struggling to get A. Glucose B. Sunlight C. Oxygen D. Water ___12. which of the following is a reactant of Krebs cycle? A. Oxygen B. Carbon dioxide C. Glucose D. Pyruvate ___13. When an organism is in a low oxygen situation, such as running sprints, cellular respiration ceases and the organisms must use a different metabolic pathway for creating energy without oxygen. What do we call this process? A. Acidification B. Hydrolysis C. Fermentation D. Citric acid cycle ___14. What is the main difference between aerobic and anaerobic respiration? A. Aerobic respiration needs oxygen to occur, while anaerobic does not B. Anaerobic respiration needs oxygen to occur, while aerobic does not C. Aerobic respiration needs carbon dioxide to occur, while anaerobic does not D. Aerobic respiration creates oxygen, while anaerobic does not ___15. Which of the following types of fermentation can occur during anaerobic respiration? A. Glycolysis and fermentation B. Alcohol fermentation and lactic acid fermentation C. Lactic acid and ethanol D. Aerobic and anaerobic