Glossary Terms Species - a group of living organisms consisting of similar individuals capable of exchanging genes or interbreeding. Morphology - Morphology, in biology, the study of the size, shape, and structure of animals, plants, and microorganisms and of the relationships of their constituent parts. Phylogeny Taxonomy - Phylogeny pertains to the evolutionary history of a taxonomic group of organisms. Binomial Nomenclature - the system of nomenclature in which two terms are used to denote a species of living organism, the first one indicating the genus and the second the specific epithet Genus - Genus, plural genera, biological classification ranking between family and species, consisting of structurally or phylogenetically related species or a single isolated species exhibiting unusual differentiation Classification - Classification, in biology, the establishment of a hierarchical system of categories on the basis of presumed natural relationships among organisms. The science of biological classification is commonly called taxonomy Hierarchial Classification - Hierarchy refers to the taxonomic classification of living organisms in successive levels of complexity Rank - In biological classification, taxonomic rank is the relative level of a group of organisms (a taxon) in a taxonomic hierarchy. Taxon - a taxonomic group of any rank, such as a species, family, or class. Ancestor - Ancestors can also refer to a group of people that came before but that are not necessarily directly related Anatomy - Anatomy, a field in the biological sciences concerned with the identification and description of the body structures of living things Physiology - Physiology is the science of life. It is the branch of biology that aims to understand the mechanisms of living things, from the basis of cell function at the ionic and molecular level to the integrated behaviour of the whole body and the influence of the external environment. Phylogenetic tree - Phylogenetic tree, also called Dendrogram, a diagram showing the evolutionary interrelations of a group of organisms derived from a common ancestral form. Structural diversity - Structural diversity is variation in the way parts are organized. Patterns formed by plant species are the most easily recognized form of structural diversity. Prokaryotic - a microscopic single-celled organism that has neither a distinct nucleus with a membrane nor other specialized organelles. Prokaryotes include the bacteria and cyanobacteria. Eukaryotic - The eukaryotic cell has a nuclear membrane that surrounds the nucleus, in which the well-defined chromosomes (bodies containing the hereditary material) are located. Dichotomous key - A dichotomous key is a tool that allows the user to determine the identity of items in the natural world, such as trees, wildflowers, mammals, reptiles, rocks, and fish. Autotroph - an organism that is able to form nutritional organic substances from simple inorganic substances such as carbon dioxide. Heterotroph - an organism deriving its nutritional requirements from complex organic substances. Species diversity - Species diversity is a function of species richness, the number of species in a given locality and species evenness, the degree to which the relative abundances of species are similar. Genetic diversity - Genetic diversity as the number of different alleles of genes in a population. Genetic diversity is a factor enabling natural selection to occur. Ecosystem diversity - Ecosystem diversity addresses the combined characteristics of biotic properties (biodiversity) and abiotic properties (geodiversity). Gene pool - A gene pool is the total genetic diversity found within a population or a species. Population - all the inhabitants of a particular town, area, or country. Resilience - the capacity to recover quickly from difficulties; toughness. Virus - an infective agent that typically consists of a nucleic acid molecule in a protein coat, is too small to be seen by light microscopy, and is able to multiply only within the living cells of a host. Capsid - another term for mirid Replication - DNA replication is the process by which a double-stranded DNA molecule is copied to produce two identical DNA molecules. Lytic Cycle - The lytic cycle is named for the process of lysis, which occurs when a virus has infected a cell, replicated new virus particles, and bursts through the cell membrane. Lysogenic cycle - the lysogenic cycle, is one of two cycles of viral reproduction (the lytic cycle being the other). Prion - Prion, an abnormal form of a normally harmless protein found in the brain that is responsible for a variety of fatal neurodegenerative diseases of animals, including humans, called transmissible spongiform encephalopathies. Bacterium - Bacteria are microscopic, single-celled organisms that exist in their millions, in every environment, both inside and outside other organisms. Archaeon - Archaea, (domain Archaea), any of a group of single-celled prokaryotic organisms (that is, organisms whose cells lack a defined nucleus) that have distinct molecular characteristics separating them from bacteria (the other, more prominent group of prokaryotes) as well as from eukaryotes. Coccus - A coccus (plural cocci) is any bacterium or archaeon that has a spherical, ovoid, or generally round shape. Bacillus - Bacillus, (genus Bacillus), any of a genus of rod-shaped, gram-positive, aerobic or (under some conditions) anaerobic bacteria widely found in soil and water. Methanogenesis - Methanogenesis or biomethanation is the formation of methane by microbes known as methanogens Extremophile - An extremophile is an organism that thrives in extreme environments. Extremophiles are organisms that live in "extreme environments," under high pressure and temperature. Mesophile: An organism that grows in best moderation temperature, neither too hot nor too cold, with an optimum growth range from 20 to 45 degrees celsius. This term is mainly about microorganisms. Binary fission: Asexual reproduction by a seperatin of the body into two new bodies. The process of binary fission, is when an organism duplicates its genetic material, deoxyribonucleic acid (DNA), and then divides into two parts (cytokinesis), with each new organism receiving one copy of DNA Conjugation: This process is when one bacterium transfers genetic material to another through direct contact. When conjugation occurs, one bacterium acts as the donor of the genetic material, while the other acts as the recipient. The donor bacterium carries a DNA sequence called the fertility factor/ F-factor Endospore: a dormant, tough, and non- reproductive structure produced by certain bacteria from the Firmicute phylum. Gram stain: a common technique used to differentiate two large groups of bacteria based on their different cell wall constituents. Gram positive bacteria stain violet because of the presence of a thick layer of peptidoglycan in their cell walls, which retains the crystal violet these cells are stained with. Endosymbiosis: Symbiosis in which one of the symbiotic organisms lives inside the other Endosymbiont: A type of symbiosis in which one organism lives inside the other, they both typically behave as a single organism. It is believed that such organelles as mitochondria and chloroplasts arose within eukaryotic cells. Host cell: a living cell invaded by or capable of being invaded by an infectious agent (such as a bacterium or a virus) This drug integrates with the virus in a way that prevents it from attaching to host cells, and prevents viral replication of cells already infected. Protest: an expression of objection/ disapproval Parasite: an organism that lives on or in a host organism and gets its food from or at the expense of its host. There are three main classes of parasites that can cause disease in humans: protozoa, helminths, and ectoparasites. Pseudopod:They are projections of the cytoplasm of unicellular protists or eukaryotic cell membranes. Often formed by the filament structure and microtubule, the surface of the cell projects a membrane in a process called lamellipodium, which is supported by the microfilaments. Cilium: small hair-like protuberances on the outside of eukaryotic cells. They are primarily responsible for locomotion, either of the cell itself or of fluids on the cell surface. They are also involved in mechanoreception. Flagellum: a microscopic hair-like organelle used by cells and microorganisms for movement. Specialized flagella in some organisms are also used as sensory organelles that can detect changes in temperature and pH. Red tide: Algal bloom refers to the excessive growth of algae, especially cyanobacteria in polluted waters. Red tides refer to the red colour imparted to the sea water by the rapid multiplication of dinoflagellates like Gonyaulax. Alga: (Algae) organisms that belong to Domain Eucarya and are distinct from animals by being photosynthetic. Differ from the vascular plants by lacking true roots, stems and leaves. Plant: multicellular organisms in the kingdom Plantae that use photosynthesis to make food and energy. Producers of oxygen, which is important in the food chain because many organisms eat plants. Embryo: early stage of development of a multicellular organism. Invertebrate: animals that neither possess nor develop a spine/ backbone. Vertebrate: also known as Craniata; any animal that has a spine/ backbone. Radial symmetry: symmetry found within a central axis. Example: starfish or flower Bilateral symmetry: a basic body plan that when the left side of an organism is symmetrical to the right side; mirror images of each other along the middle. Coelom: the main body cavity in most animals and is positioned inside the body to surround and contain the digestive tract and other organs. Segmentation: also known as metamerism. It is the condition of being constructed of a linear series of repeating parts, each being a metamere (body segment), and each being formed in sequence in the embryo, from anterior to posterior. Polyp: the sessile form of cnidarian (such as a coral or sea anemone) typically having a hollow cylindrical body closed and attached at one end and opening at the other by a central mouth surrounded by tentacles armed with nematocysts. Medusa: on out of two main body types occurring in members of the invertebrate animal phylum Cnidaria. It is mostly the form of the jellyfish. Mantle: Also known as pallium. It is a soft covering, formed from the body wall, of brachiopods and mollusks; also the fleshy outer covering, sometimes strengthened by calcified plates Exoskeleton: the external skeleton that supports and protects the the animal's body Notochord: a rodlike cord of cells that forms the chief axial supporting structure of the body of the lower chordates, as amphioxus and the cyclostomes, and of the embryo of the vertebrates. Cartilage: a resilient and smooth elastic tissue, a rubber- like padding that covers and protects the ends of long bones at the joints and nerves. It is a structural component of the ribcage, the ear, the nose and bronchial tube. Tetrapod: Four limbed animals (snakes are an exception). Ectothermy: cold- blooded animal. An animal who can regulate its body temperature depending on external sources. Mammary gland: the organs in the female mammal that produce milk to its young. Placenta: a flattened circular organ in the uterus of pregnant mammals that nourishes and maintains the fetus through the umbilical cord. Mass extinction: a loss of about three quarters of all species in existence. Embryo: Early stage of development of a multicellular organism Sporic Reproduction: The production of spores. Most eukaryotic spores are haploid and form by cell division, but some are formed through call fusion. Gametophyte: in plants and some algae, the sexual phase, in the alterations of generations, in which two phases happen in the life of an organism. Sporophyte: the nonsexual phase in plants Bryophyte: Mosses. Any plant of phyla Bryophyta Gymnosperm: a group of plants that produce seeds, that do not contain ovary or fruit. Angiosperm: a major division of plant life, which makes up the majority of all plants on earth. They produce seeds inside “fruits”. Cone: also known as strobilus, mass of scales or bracts, typically ovate in shape, that includes the reproductive organs of some non flowering plants. Flower: also known as bloom or blossom, the function of flowers is to reproduce. Fruit: in batomy, it is a seed bearing structure in flowering plants (angiosperms) formed from the ovary after flowering. Monocot: has seeds that contain a single (mono-) embryonic leaf known as cotyledon. Ex: grains, sugarcane, banana, ginger, onions, sugar Dicot: the dicotyledons, known as dicots (or rarely dicotyls), are one of the two groups into which all the flowering plants or angiosperms were formally divided. Fungus: plural fungi, is any diverse group of eukaryotic single-celled or multinucleate organism that live by decomposing and absorbing organic material in which they grow, comprising the mushrooms, molds, mildews, smuts, rusts, and yeats. About 144,000 known species of organisms. Hypha: (plural: Hyphae) one long stender tube that develops from germinated spores and forms the structural parts of the body of a fungus. A large mass of hyphae is known as mycelium, which is the growing form of most fungi. Mycelium: A large mass of hyphae, the vegetative part of a fungus or fungus like bacterial colony. Fruiting body: a plant organ specialized for producing spores especially sporophore Zygospore: diploid reproductive stage in the life cycle of a lot of fungi and protists. They are made by the nuclear fusion of haploid cells. Ascus: (Plural: asci) a saclike structure produced by fungi or the phylum ascomycota (sac fungi) in which sexually produced spores (asopores), usually four or eight in number are formed Basidium: in fungi (kingdom Fungi), the organ in the members of the phylum Basidiomycota (q.v.) that bears sexually reproduced bodies called basidiospores. The basidium serves as the site of karyogamy and meiosis, functions by which sex cells fuse, exchange nuclear material, and divide to reproduce basidiospores. Biodiversity crisis: The loss of ecosystem diversity results in the loss of interactions between species, unique features of co- adaptation, and biological productivity. Human-generated species diversity has decreased due to migration, market forces, and agriculture. Modeling: a model is a representation of the structure and function of a biologicalsystem, and may be concerned with any level of biology from molecules to ecosystems. Models allow us to test our understanding of particular systems and, if the models are good, to make predictions. Temperature sex determination: Temperature-dependent sex determination (TSD) is a type of environmental sex determination in which the temperatures experienced during embryonic/larval development determine the sex of the offspring. It is only observed in reptiles and teleost fish.