Chemistry of Biological and Natural Products Experiment 1 Objectives: To determine the available nitrogen in the soil sample by Kjeldahl Method. Theory: A soil analysis is a process by which elements such as P, K, Ca, Mg, Na, S, Mn, Cu and Zn are chemically extracted from the soil and measured for their “plant available” content within the soil sample. Significance of Soil Analysis: It increases the knowledge of what nutrients are especially available in our soil. It reduces the environmental impacts due to soil amendments. It increases the efficiency of resource inputs such as fertilisers and water. It helps to predict the nutritional values needed for crop production. It helps to evaluate the fertility status of soils of a country or a state or a district. Procedure for Taking Good Soil Samples: Determine the soil unit (or plot). Make a traverse over the soil unit (or plot). Clean the site (with spade) from where soil sample is to be collected. Insert the spade into soil. Standing on the opposite side, again insert the spade into soil. A lump of soil is removed. A pit of ‘V’ shape is formed. Its depth should be 0-6" or 0-9" or 0-12" (i.e., Depth of tillage). Take out the soil-slice (like a bread slice) of ½ inch thick from both the exposed surface of the pit from top to bottom. This slice is also termed furrow-slice. To collect the soil-slice spade may be used. Collect the soil samples in a polyethylene bucket. Collect furrow-slices from 8-10 or sometimes 20-30 sites. Select the sites at random in a zigzag (or criss-cross) manner. Distribute the sites throughout the entire soil unit (plot). In lieu of spade auger may be used. Do not take the prohibited samples and local problem soils. Furnish the following information in two sheets of thick paper with the sample. One sheet is folded and kept inside the bag. Another sheet is folded and attached to the bag. Available Nitrogen Content in Soil: Nitrogen is one of the major elements required for life. It will stimulate above ground growth, and produces the rich green colour that is the characteristic of healthy plants, because of this Nitrogen is essential for plant life. 78% of the atmosphere is covered by molecular Nitrogen (N2); this form of Nitrogen cannot be used by animals. This molecular Nitrogen must first combine with Oxygen or Hydrogen to produce compounds such as Ammonia or Nitrate, or some other organic form of Nitrogen. This is called Nitrogen Fixation. Some Nitrogen Fixation occurs by lightning and some other by blue green algae. However, the bulk of Nitrogen Fixation is preferred by bacteria living in the soil. Some of the Nitrogen Fixation bacteria were living free in the soil, while the others were living within the root nodules of some plants such as soya bean, peanut, beans, clover, alfalfa, etc. Because of Ammonia or Ammonium is produced by the decomposition process, the decomposition of materials in the forest is also a source of Nitrogen. The movement of Nitrogen from the atmosphere into inorganic forms, followed by the incorporation of Nitrogen into plant matter is represented as the Nitrogen Cycle, which is shown in the figure given below. The rate of plant growth is proportional to the rate of nitrogen supply. If the soil is deficient in Nitrogen, the plants become stunted and pale. However, an excess of Nitrogen can damage the plants just as over-fertilizing the lawn can burn and damage the grass. Apparatus: Kjeldahl Digestion Assembly, Ammonia Distillation Assembly. Principle: The Kjeldahl method permits the available nitrogen to be precisely determined in the plant and in the soil. The method of determination involves three successive phases which are, 1. Digestion: Digestion of the organic material is carried out by digesting the sample with Con. H 2SO4 in the presence of CuSO4.H2O as a catalyst and K2SO4 which raise the digestion temperature. The organic material decomposes into several components i.e., C → CO2, O → H2O and N → NH3 In the organic matter, some nitrates are present, most of which are lost during the digestion. The loss may be disregarded for most soils. Since the amount of NO3- - N is far lesser than the Organic Nitrogen. 2 C6H3 (OH) NH2COO + 26 H2SO4 → (NH4) 2SO4 + 25 SO2 + 14 CO2 + 28H2O 2. Distillation: The Ammonia content of the digest is determined by distillation with excess NaOH and absorption of the evolved NH3 is in standard HCl. (NH4)2SO4 + 2 NaOH → Na2SO4 + 2 NH3 + 2 H2O NH3 +HCl → NH4Cl 3. Volumetric Analysis: The excess of standard HCl is titrated against standard NaOH using Methyl Red as an indicator. The decrease in the multi equivalence of acid as determined by acid-base titration, which gives a measure of the N content of the sample. The end point is determined by a change of colour from pink to yellow. 2 HCl + 2 NaOH → 2 NaCl + H2O Significance: The chemical analysis of the soil for nitrogen is less precise when the requirement for this element needs to be forecast over a longer period of time, as they vary not only with species, but with the phase of growth and season as well. Therefore, the chemical test for NO3- and NH4+ signifies the momentary status when the sample is taken and measures must be taken instantaneously. The analysis of the extractable Nitrogen content of the soil using a given extractable method. In reaction to crop response study provides a basis of Nitrogen fertility levels, which will rationalize the use efficiency of Nitrogen fertilizer content of the soil are also needed for the evaluation of C-N ratios of soils which give an indication of the process of transformation of organic Nitrogen to available Nitrogen like ammoniated nitrate Nitrogen. Observations and Calculations: Results: The % of N in the given soil sample is 0.0672%. Experiment 2 Objective: To determine chemical parameters such as hardness, alkalinity, and chemical oxygen demand COD) of water samples. Theory: It is needless to emphasize the importance of water in our life. Without water, there is no life on our planet. We need water for different purposes. We need water for drinking, for industries, for irrigation, for swimming and fishing, etc. Water for different purposes has its own requirements for composition and purity. Each body of water needs to be analysed on a regular basis to confirm to suitability. The types of analysis could vary from simple field testing for a single analyte to laboratory based multi-component instrumental analysis. The measurement of water quality is a very exacting and time-consuming process, and a large number of quantitative analytical methods are used for this purpose. 1. Total hardness: Theory: Hardness in water is that characteristic, which “prevents the lathering of soap”. This is due to presence in water of certain salts of calcium, magnesium and other heavy metals dissolved in it. A sample of hard water, when treated with soap does not produce lather, but on other hand forms a white scum or precipitate. This precipitate is formed, due to the formation of insoluble soaps of calcium and magnesium. Thus, water which does not produce lather with soap solution readily, but forms a white curd, is called hard water. On the other hand, water which lathers easily on shaking with soap solution, is called soft water. Such water consequently does not contain dissolved calcium and magnesium salts in it. Temporary or carbonate hardness: It is caused by the presence of dissolved bicarbonates of calcium, magnesium and other heavy metals and the carbonate of iron. Temporary hardness is mostly destroyed by mere boiling of water, when bicarbonates are decomposed, will produce insoluble carbonates or hydroxides, which are deposited as a crust at the bottom of vessel. Permanent or non-carbonate hardness: It is due to the presence of chlorides and sulphates of calcium, magnesium, iron, and other heavy metals. Unlike temporary hardness, permanent hardness is not destroyed on boiling. The degree of hardness of drinking water has been classified in terms of the equivalent CaCO3 concentration as follows: Soft Medium Hard Very Hard 0-60mg/L 60-120mg/L 120-180mg/L >180mg/L In a hard water sample, the total hardness can be determined by titrating the Ca2+ and Mg2+ present in an aliquot of the sample with Na2EDTA solution, using NH4Cl-NH4OH buffer solution of pH 10 and Eriochrome Black-T as the metal indicator. Na2H2Y (Disodium EDTA solution) → 2Na+ + H2YMg2+ + HD2- (blue) → MgD (wine red) + H+ D (metal-indicator complex, wine red colour) + H2Y- →Y- (metal EDTA complex colourless) + HD- (blue colour) + H+ Ethylenediamine tetra-acetic acid (EDTA) and its sodium salts form a chelated soluble complex when added to a solution of certain metal cations. If a small amount of a dye such as Eriochrome black T is added to an aqueous solution containing calcium and magnesium ions at a pH of 10 ± 0.1, the solution will become wine red. If EDTA is then added as a titrant, the calcium and magnesium will be complexed. After sufficient EDTA has been added to complex all the magnesium and calcium, the solution will turn from wine red to blue. This is the end point of the titration. Units of Hardness: 1. Parts per million (ppm): Is the parts of calcium carbonate equivalent hardness per 106 parts of water, i.e, 1 ppm = 1 part of CaCO3 eq hardness in 106 parts of water. 2. Milligram per litre (mg/L): Is the number of milligrams of CaCO3 equivalent hardness present per litre of water. Thus: 1 mg/L = 1 mg of CaCO3 eq hardness per L of water. 3. Clarke’s degree (oCl): Is number of grains (1/7000 lb) of CaCO3 equivalent hardness per gallon (10 lb) of water. Or it is parts of CaCO3equivalent hardness per 70,000 parts of water. Thus, 1oClarke = 1 grain of CaCO3 eq hardness per gallon of water. 4. Degree French (oFr): Is the parts of CaCO3 equivalent hardness per 105 parts of water. Thus, 1o Fr = 1 part of CaCO3 hardness eq per 105 parts of water. Relationship Between Various Units of Hardness: 1ppm =1 mg/L=0.1oFr =0.07oCl 1mg/L=1 ppm=0.1oFr =0.07oCl 1oCl=1.43oFr=14.3 ppm=0.7omg/L 1oFr=10 ppm=10 mg/L=0.7oCl 2. Alkalinity: Theory: Alkalinity is an aggregate property of the water sample which measures the acid-neutralizing capacity of a water sample. It can be interpreted in terms specific substances only when a complete chemical composition of the sample is also performed. The alkalinity of surface water is due to the carbonate, bicarbonate and hydroxide content and is often interpreted in terms of the concentrations of these constituents. Higher the alkalinity, greater is the capacity of water to neutralize acids. Conversely, the lower the alkalinity, the lesser will be the neutralizing capacity. Alkalinity of sample can be estimated by titration with standard H2SO4 or HCI solution. Titration to pH 8.3 or decolourisation of phenolphthalein indicator will indicate complete neutralization of OH- and 1/2 of CO32-, while to pH 4.5 or sharp change from yellow to orange of methyl orange indicator will indicate total alkalinity. To detect the different types of alkalinity, the water is tested for phenolphthalein and total alkalinity, using Equations: Where, A = titrant (mL) used to titrate to pH 8.3 B = titrant (mL) used to titrate to pH 4.5 N = normality of the acid (0.02N H2SO4 for this alkalinity test) 50,000 = a conversion factor to change the normality into units of CaCO3 Once PA and TA are determined, then three types of alkalinities, i.e, hydroxides, carbonates and bicarbonates can be easily calculated from the table: Result of Titration OH alkalinity as CaCO3 CO3 alkalinity as CaCO3 HCO3 alkalinity as CaCO3 PA = 0 0 0 TA PA < 1/2TA 0 2PA TA - 2PA PA = 1/2TA 0 2PA 0 PA > 1/2TA 2PA - TA 2(TA - PA) 0 PA = TA TA 0 0 3. Chemical Oxygen Demand (COD): Theory: COD is used as a measure of oxygen equivalent to organic matter content of a sample that is susceptible to oxidation by a strong chemical oxidant. For samples from a specific source, COD can be related empirically to BOD. COD determination has advantage over BOD determination in that the result can be obtained in about 5 hours as compared to 5 days required for BOD test. The organic matter gets oxidized completely by K2Cr2O7 in the presence of H2SO4 to produce CO2 and H2O. The excess of K2Cr2O7 remained after the reaction is titrated with ferrous ammonium sulphate. The dichromate consumed gives the O2 required for oxidation of organic matter. DRINKING WATER QUALITY STANDARDS: Sl. No. 1 2 3 4 Characteristic/Parameter Colour Odour Turbidity pH BIS ICMR WHO 5 Agreeable 10 NTU 6.5-8.5 2.5 Unobjectionable 5 NTU 7.0-85 Unobjectionable 2.5 NTU 7.0-8.5 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 TDS Hardness Ca Mg CL Sulphate Fe Nitrate Phenolic compounds Cd, Sc Cu, As Cyanides Pb Anionic detergents PAH Residual Chlorine Pesticides BIS- Beaurau of Indian Standards. ICMR- Indian Council for Medical Research. WHO- World Health Organization Observations: Titrant used: 2.6 mL 500 mgl 300 mgl 75 mgl 30 mgl 250 mgl 200 mgl 0.3 mgl 45 mgl 0.001 mgl 0.01 mgl 0.05 mgl 0.05 mgl 0.1 mgl 0.2 mgl 0.2 mgl Absent 500 mgl 300 mgl 75 mgl 50 mgl 200 mgl 200 mgl 0.1 mgl 20 mgl 0.001 mgl 0.05 mgl - 500 mgl 200 mgl 75 mgl 30 mgl 200 mgl 200 mgl 0.1 mgl 45 mgl 0.001 mgl 0.01 mgl 0.01 mgl 0.01 mgl 0.01 mgl - Titrant used: 1.6 mL Titrant used: 6.0 mL Calculations: 1. Well water Volume of EDTA used= 2.6 mL Molarity of EDTA = 0.01 M Volume of the water sample = 10 mL Therefore, the total hardness of the sample is = = 260 ppm 2. Tap water Volume of EDTA used= 1.6 mL Molarity of EDTA = 0.01 M Volume of the water sample = 10 mL Therefore, the total hardness of the sample is = = 160 ppm 3. Sea water Volume of EDTA used= 6.0 mL Molarity of EDTA = 0.01 M Volume of the water sample = 10 mL Therefore, the total hardness of the sample is = Results: Hardness of well water is 260 ppm. Hardness of tap water is 160 ppm. Hardness of sea water is 600 ppm. = 600 ppm Experiment 3 Objective: To Estimate the Saponification value of oils Theory: Fats and oils are the principle stored forms of energy in many organisms. They are highly reduced compounds and are derivatives of fatty acids. Fatty acids are carboxylic acids with hydrocarbon chains of 4 to 36 carbons, they can be saturated or unsaturated. The simplest lipids constructed from fatty acids are triacylglycerols or triglycerides. Triacylglycerols are composed of three fatty acids each in ester linkage with a single glycerol. Since the polar hydroxyls of glycerol and the polar carboxylates of the fatty acids are bound in ester linkages, triacyl glycerols are non-polar, hydrophobic molecules, which are insoluble in water. Saponification is the hydrolysis of fats or oils under basic conditions to afford glycerol and the salt of the corresponding fatty acid. Saponification literally means "soap making". It is important to the industrial user to know the amount of free fatty acid present, since this determines in large measure the refining loss. The amount of free fatty acid is estimated by determining the quantity of alkali that must be added to the fat to render it neutral. This is done by warming a known amount of the fat with strong aqueous caustic soda solution, which converts the free fatty acid into soap. This soap is then removed and the amount of fat remaining is then determined. The loss is estimated by subtracting this amount from the amount of fat originally taken for the test. The saponification number is the number of milligrams of potassium hydroxide required to neutralize the fatty acids resulting from the complete hydrolysis of 1g of fat. It gives information concerning the character of the fatty acids of the fat- the longer the carbon chain, the less acid is liberated per gram of fat hydrolysed. It is also considered as a measure of the average molecular weight (or chain length) of all the fatty acids present. The long chain fatty acids found in fats have low saponification value because they have a relatively fewer number of carboxylic functional groups per unit mass of the fat and therefore high molecular weight. Principle: Fats (triglycerides) upon alkaline hydrolysis (either with KOH or NaOH ) yield glycerol and potassium or sodium salts of fatty acids (soap) . Materials required: 1) Fats and Oils [coconut oil, sunflower oil] 2) Conical Flask 3) 100ml beaker 4) Weigh Balance 5) Dropper 6) Reflux condenser 7) Boiling Water bath 8) Glass pipette (25ml) 9) Burette Reagents required: 1) 2) 3) 4) 5) Ethanolic KOH(95% ethanol, v/v) Potassium hydroxide [0.5N] Fat solvent Hydrochloric acid[0.5N] Phenolphthalein indicator Procedure: 1) Weigh 1g of fat in a tared beaker and dissolve in about 3ml of the fat solvent [ ethanol /ether mixture]. 2) Quantitatively transfer the contents of the beaker three times with a further 7ml of the solvent. 3) Add 25ml of 0.5N alcoholic KOH and mix well, attach this to a reflux condenser. 4) Set up another reflux condenser as the blank with all other reagents present except the fat. 5) Place both the flasks in a boiling water bath for 30 minutes . 6) Cool the flasks to room temperature . 7) Now add phenolphthalein indicator to both the flasks and titrate with 0.5N HCl . 8) Note down the endpoint of blank and test . 9) The difference between the blank and test reading gives the number of millilitres of 0.5N KOH required to saponify 1g of fat. 10) Calculate the saponification value using the formula : Saponification value or number of fat = mg of KOH consumed by 1g of fat. Weight of KOH = Normality of KOH * Equivalent weight* volume of KOH in litres Volume of KOH consumed by 1g fat = [Blank – test]ml Procedure: 1 . 2 . 3 . 4 . 5 6 7 8 Mixtureethanol+KOH 9 10 0 11 0 (AFTER ADDING THE INDICATOR) 12 0 13 0 REPEAT THE SAME WITH THE BLANK AND NOTE THE END POINTS. Observations: 1. Oil/fat used- Coconut oilBLANK READING-20.00 mL TEST READING-11.00 mL CalculationsTITLE INITIAL BURETTE FINAL BURETTE VOLUME OF HCL READING READING RUN DOWN TEST 0.0 11.00 11.00 BLANK 0.0 20.00 20.00 VOLUME OF KOH CONSUMED BY 1g FAT= (20.0-11.0) = 9.00 Ml WEIGHT OF KOH= NORMALITY OF KOH*EQUIVALENT WEIGHT*VOLUME OF KOH IN L 0.5*56*9/1000=0.252g=252 mg=saponification number of coconut oil 2. Oil/fat used- Butter- READINGS- 12.6 mL Calculations: TITLE TEST BLANK INITIAL BURETTE READING 0.0 0.0 FINAL BURETTE READING 12.60 20.00 VOLUME OF HCL RUN DOWN 12.60 20.00 VOLUME OF KOH CONSUMED BY 1g FAT= (20.0-12.6) = 7.4 Ml WEIGHT OF KOH= NORMALITY OF KOH*EQUIVALENT WEIGHT*VOLUME OF KOH IN L 0.5*56*7.4/1000=0.2072=207.2 mg=saponification number of butter Result: The saponification number of coconut oil is 252 mg. The saponification number of butter is 207.2 mg. Experiment 4 Estimation of Iodine Value of Fats and Oils Objective: To determine the iodine value of fats and oils and thus estimate the unsaturation of the fats and oils. Theory: Fats and oils are a mixture of triglycerids. Triglycerides are made up of three fatty acids linked to glycerol by fatty acyl esters. Fatty acids are long chain hydrocarbons with carboxyl groups (COOH groups). These fatty acids can be classified into saturated or unsaturated based on the number of double bonds present in the fatty acid. Saturated fatty acids contain only single bond between the carbon atoms and are tend to be solids at room temperature. Unsaturated fatty acids contain double bonds between the carbon atom in addition to the single bonds present in the fatty acid chain. They are likely to exists as liquids at room temperature. The double bonds present in the naturally occurring unsaturated fats are in the Cis form. Trans fatty acids are associated with health problems and cardiovascular diseases. Unsaturated fatty acids can be converted into saturated by the process of hydrogenation. Depending upon the degree of unsaturation, the fatty acids can combine with oxygen or halogens to form saturated fatty acids. So it is important to know the extend to which a fatty acid is unsaturated. There are different methods for checking the unsaturation level in fatty acids, one among them is by determining the iodine value of fats. Iodine value or number is the number of grams of iodine consumed by 100g of fat. A higher iodine value indicates a higher degree of unsaturation. unsaturated fatty acids Principle: Fatty acids react with a halogen [ iodine] resulting in the addition of the halogen at the C=C double bond site. In this reaction, iodine monochloride reacts with the unsaturated bonds to produce a di-halogenated single bond, of which one carbon has bound an atom of iodine. After the reaction is complete, the amount of iodine that has reacted is determined by adding a solution of potassium iodide to the reaction product. ICl + KI ---------------> KCl + I2 This causes the remaining unreacted ICl to form molecular iodine. The liberated I2 is then titrated with a standard solution of 0..1N sodium thiosulfate. I2 + 2 Na2S2O3 -----------------> 2 NaI + Na2S2O4 Saturated fatty acids will not give the halogenation reaction. If the iodine number is between 070, it will be a fat and if the value exceeds 70 it is an oil. Starch is used as the indicator for this reaction so that the liberated iodine will react with starch to give purple coloured product and thus the endpoint can be observed. Materials Required: • • • • • • • • • • • • Iodine Monochloride Reagent Potassium Iodide Standardized 0.1 N Sodium thiosulphate 1% Starch indicator solution Reagent bottle Chloroform Fat sample in chloroform Iodination flask Burette and burette stand with magnetic stirrer Glass pipette Measuring cylinder Distilled water Method: 1. Arrange all the reagent solutions prepared and the requirements on the table. 2. Pipette out 10ml of fat sample dissolved in chloroform to an iodination flask labeled as “TEST". 3. Add 20ml of Iodine Monochloride reagent in to the flask. Mix the contents in the flask thoroughly. 4. Then the flask is allowed to stand for a half an hour incubation in dark. 5. Set up a BLANK in another iodination flask by adding 10ml Chloroform to the flask. 6. Add to the BLANK, 20ml of Iodine Monochloride reagent and mix the contents in the flask thoroughly. 7. Incubate the BLANK in dark for 30 minutes. 8. Mean while, Take out the TEST from incubation after 30 minutes and add 10 ml of potassium iodide solution into the flask. 9. Rinse the stopper and the sides of the flask using 50 ml distilled water. 10. Titrate the “TEST” against standardized sodium thiosulphate solution until a pale straw colour is observed. 11. Add about 1ml starch indicator into the contents in the flask, a purple colour is observed. 12. Continue the titration until the color of the solution in the flask turns colourless. 13. The disappearance of the blue colour is recorded as the end point of the titration. 14. Similarly, the procedure is repeated for the flask labeled ‘Blank'. 15. Record the endpoint values of the BLANK . 16. Calculate the iodine number using the equation below: Volume of Sodium thiosulphate used = [Blank- Test] mL Equivalent Weight of Iodine = 127g Normality of sodium thiosulphate ( Na2S203) = 0.1M Observations: (Procedure) 1. 2. 3. 4. 5. 6. 7. 8. 10mL KI is to be added to the test solution 9. 10. After the pale yellow color is obtained, starch is added to the test solution and then titrated till solution becomes colorless from bluish black. The end point of the titration is noted. 11. Similar procedure is followed with blank only that fat is not added to the blank 12. Calculation is performed in the following format. Observations (Simulator): BLANK- COCONUT OIL- SESAME OIL- OLIVE OIL MUSTARD OIL- Name of oil Volume of blank Coconut Sesame Olive Mustard 65.1 65.1 65.1 65.1 Formula used- Volume of test solution 63.7 43.8 51.7 47.2 Na2S2O3 used 1.399 21.299 13.399 17.899 Normality of Sodium thiosuplate(N) 0.1 0.1 0.1 0.1 Equivalent weight of Iodine 127 127 127 127 Iodine Value 6.35 133.35 82.55 107.94 Result: The iodine value of coconut oil is 6.35 The iodine value of sesame oil is 133.35 The iodine value of olive oil is 82.55 The iodine value of mustard oil is 107.94 EXPERIMENT 5 Objective: To characterize carbohydrates present in an unknown solution on the basis of various chemical assays. Theory: Carbohydrates are polyhydroxy aldehydes and ketones or substances that hydrolyze to yield polyhydroxy aldehydes and ketones. Aldehydes (–CHO) and ketones ( = CO) constitute the major groups in carbohydrates. Fig: Carbohydrates are mainly divided into monosaccharides, disaccharides and polysaccharides. The commonly occurring monosaccharides includes glucose, fructose, galactose, ribose, etc. The two monosaccharides combine together to form disaccharides which include sucrose, lactose and maltose. Starch and cellulose fall into the category of polysaccharides, which consist of many monosaccharide residues. 1. Molisch’s Test: This is a common test for all carbohydrates larger than tetroses. The test is on the basis that pentoses and hexoses are dehydrated by conc. Sulphuric acid to form furfural or hydroxymethylfurfural, respectively. These products condense with α-naphthol to form purple condensation product. 2. Fehling’s Test: This forms the reduction test of carbohydrates. Fehling’s solution contains blue alkaline cupric hydroxide solution, heated with reducing sugars gets reduced to yellow or red cuprous oxide and is precipitated. Hence, formation of the yellow or brownish-red colored precipitate helps in the detection of reducing sugars in the test solution. 3. Benedict’s Test: As in Fehling’s test, free aldehyde or keto group in the reducing sugars reduce cupric hydroxide in alkaline medium to red colored cuprous oxide. Depending on the concentration of sugars, yellow to green color is developed . All monosaccharides are reducing sugars as they all have a free reactive carbonyl group. Some disaccharides, like maltose, have exposed carbonyl groups and are also reducing sugars, but less reactive than monosaccharides 4. Barfoed’s test : Barfoed's test is used to detect the presence of monosaccharide (reducing) sugars in solution. Barfoed's reagent, a mixture of ethanoic (acetic) acid and copper(II) acetate, is combined with the test solution and boiled. A red copper(II) oxide precipitate is formed will indicates the presence of reducing sugar. The reaction will be negative in the presence of disaccharide sugars because they are weaker reducing agents. This test is specific for monosaccharides . Due to the weakly acidic nature of Barfoed's reagent, it is reduced only by monosaccharides. 5. Seliwanoff’s Test: It is a color reaction specific for ketoses. When conce: HCl is added. ketoses undergo dehydration to yield furfural derivatives more rapidly than aldoses. These derivatives form complexes with resorcinol to yield deep red color. The test reagent causes the dehydration of ketohexoses to form 5-hydroxymethylfurfural. 5-hydroxymethylfurfural reacts with resorcinol present in the test reagent to produce a red product within two minutes (reaction not shown). Aldohexoses reacts so more slowly to form the same product. 6. Bial’s Test: Bial’s test is used to distinguish between pentoses and hexoses. They react with Bial’s reagent and are converted to furfural. Orcinol and furfural condense in the presence of ferric ion to form a colored product. Appearance of green colour or precipitate indicates the presence of pentoses and formation of muddy brown precipitate shows the presence of hexoses. 7. Iodine Test: This test is used for the detection of starch in the solution. The blue-black colour is due to the formation of starch-iodine complex. Starch contain polymer of α-amylose and amylopectin which forms a complex with iodine to give the blue black colour. 8. Osazone Test: The ketoses and aldoses react with phenylhydrazine to produce a phenylhydrazone which further reacts with another two molecules of phenylhydrazine to yield osazone. Needle-shaped yellow osazone crystals are produced by glucose, fructose and mannose, whereas lactosazone produces mushroom shaped crystals. Crystals of different shapes will be shown by different osazones. Flower-shaped crystals are produced by maltose. Materials Required: 1) Glassware 2) Test tubes 3) Test tube holder 4) Water bath 5) Spatula 6) Dropper Reagents Required: 1) Molisch’s Reagent 2) Iodine solution 3) 4) 5) 6) 7) 8) 9) 10) 11) 12) 13) Fehling’s reagent A Fehling’s reagent B Benedict’s qualitative reagent Barfoed’s reagent Seliwanoff ’s reagent Bial’s reagent Phenylhydrazine hydrochloride Sodium acetate Glacial acetic acid Glucose, fructose Microscope Procedure: No. Test Observation Inference Reaction Molisch’s Test 1 2-3 drops of betanaphthol solution are added to 2ml A deep of the test violet coloration is Presence of solution. Very produced at the carbohydrates. gently add 1ml of junction of two Conc. layers. H2SO4 along the side of the test tube.. This is due to the formation of an unstable condensation product of betanaphthol with furfural (produced by the dehydration of the carbohydrate). Iodine test 4-5 drops of iodine solution are added Blue colour 2 to 1ml of the test observed. solution and contents are mixed gently. Fehling's test 3 About 2 ml of sugar solution is Iodine forms coloured is Presence of adsorption polysaccharide. complexes with polysaccharides. A red precipitate is Presence formed reducing sugar This is due to the of formation of cuprous oxide by the reducing action added to about 2 ml of Fehling’s solution taken in a test-tube. It is then boiled for 10 min of the sugar. Benedict’s test 4 To 5 ml of Benedict's solution, add 1ml of the test solution If the saccharide is and shake each a reducing sugar it Formation of a tube. Place the Presence of will reduce Copper green, red, or tube in a boiling reducing sugars [Cu] (11) ions to yellow precipitate water bath and Cu(1) oxide, a red heat for 3 precipitate minutes. Remove the tubes from the heat and allow them to cool. Barfoed’s test 5 To 2 ml of the solution to be tested added 2 ml of freshly prepared Barfoed's reagent. Place test tubes into a boiling water bath and heat for 3 minutes. Allow to cool. A deep blue colour is formed with a red ppt. settling down at the bottom or sides of the test tube. Presence of reducing sugars. Appearance of a red ppt as a thin film at the bottom of the test tube within 3-5 min. is indicative of reducing monosaccharide. If the ppt formation takes more time, then it is a reducing disaccharide. If the saccharide is a reducing sugar it will reduce Cu (11) ions to Cu(1) oxide 6 When reacted with Seliwanoff reagent, ketoses react within 2 minutes forming a cherry red condensation product A cherry red Presence of colored precipitate ketoses Seliwanoff test within 5 minutes is [Sucrose gives a obtained. To 3ml of of positive ketohexose Seliwanoff’s test ] reagent, add 1ml of the test solution. Boil in Aldopentoses react water bath for 2 slowly, forming the A faint red minutes. Presence of aldoses coloured colour produced condensation product. Bial's test 7 A blue-green Presence product pentoses. Add 3ml of Bial’s reagent to 0.2ml of the test solution. A muddy brown to Presence Heat the solution gray product hexoses. in a boiling water bath for 2 minutes. of The furfurals formed produces of condensation products with specific colour. Osazone Test 8 Two two ml of the test solution, add 3ml of phenyl hydrazine hydrochloride solution and mix. Keep in a boiling water bath for 30mts. Cool the solution and observe the crystals under microscope. Formation beautiful crystals of Needle crystals Hedgehog Sunflower crystals of yellow osazone Glucose/fructose shaped Reducing sugars Presence of lactose forms ozazone on crystals Presence of treating with shaped maltose phenylhydrazine Observation: 1. MOLISCH TEST 2. BENEDICT’S TEST 3. FEHLING’S TEST 4. BARFOED’S TEST 5. SELIWANOFF’S TEST 6. BIAL’S TEST 7. IODINE TEST 8. OSAZONE TEST Result: Conclusion: The given sugar maybe ribose . EXPERIMENT 6 Objective: To perform the isoelectric precipitation of casein present in milk. Theory: Milk is a mixture of many types of proteins, most of them present in very small amounts. Milk proteins are classified into three main groups of proteins on the basis of their widely different behaviors and forms of existence. They are caseins (80%), whey proteins and minor proteins. Casein is a heterogeneous mixture of phosphorous containing proteins in milk. Casein is present in milk as calcium salt and calcium caseinate. It is a mixture of alpha, beta and kappa caseins to form a cluster called micelle. These micelles are responsible for the white opaque appearance of milk. Casein, like proteins, are made up of many hundreds of individual amino acids. Each may have a positive or a negative charge, depending on the pH of the [milk] system. At some pH value, all the positive charges and all the negative charges on the [casein] protein will be in balance, so that the net charge on the protein will be zero. That pH value is known as the isoelectric point (IEP) of the protein and is generally the pH at which the protein is least soluble. For casein, the IEP is approximately 4.6 and it is the pH value at which acid casein is precipitated. In milk, which has a pH of about 6.6, the casein micelles have a net negative charge and are quite stable. During the addition of acid to milk, the negative charges on the outer surface of the micelle are neutralized (the phosphate groups are protonated), and the neutral protein precipitates. The same principle applies when milk is fermented to curd. The lactic acid bacillus produces lactic acid as the major metabolic end-product of carbohydrate [lactose in milk] fermentation. The lactic acid production lowers the pH of milk to the IEP of casein. At this pH, casein precipitates. Materials required: 1) Raw milk - 100ml 2) 0.2N HCl - 50ml 3) Diethyl ether - 50ml 4) 50% Ethanol - 50ml 5) Whatman No 1 filter paper strip (Size 25×50mm) - 2 no. Procedure: 1. Measure 100ml of milk in a measuring cylinder and transfer 25ml of milk to four Oakridge centrifuge tubes each. 2. Centrifuge the milk in a centrifuge at 4000rpm at room temperature (25- 30o C) for 20 minutes. This is done to remove the fats and lipids from the mixture. 3. After centrifugation, carefully remove the fats and lipids from the surface of the milk with a spatula. 4. Then transfer the milk from all the tubes into a beaker and add equal volume of distilled water and stir well. Now check the pH. 5. Start adding 0.2N HCl drop by drop into the milk mixture and stir well. 6. Note the PH at which precipitation (white curdy substances) appears. The pH should be 4.6. 7. Take the curdy precipitate and allow it to sediment. 8. Now decant the supernatant using a filter paper and funnel and wash the precipitate with distilled water to remove the salts, then wash with diethyl ether and ethanol. 9. Dry the precipitate and take the weight of the casein and record it. Observations (Animation video): 1 2 1 3 2 2 2 1 4 3 3 2 2 2 1 5 3 3 2 2 2 1 6 3 3 2 2 2 1 7 3 3 2 2 2 1 Simulator: Result: Casein gets precipitated at pH 4.6 where it has the least solubility. Thus 4.6 is the isolectric pH of casein. EXPERIMENT 7 Aim: To extract DNA from leaves/ fruit at home. Theory: Plant materials are among the most difficult for high quality DNA extractions. The key is to properly prepare the tissues for extraction. In most cases this involves the use of liquid nitrogen flash freezing followed by grinding the frozen tissue with a mortar and pestle. Liquid nitrogen is difficult to handle and it is dangerous in an open laboratory environment such as a classroom. For this reason, we have modified a very simple plant DNA extraction protocol to use fresh tissue. Materials Required: o o o o o o o o o o Fruit – Kiwi, Strawberries, and Banana, leafy vegetables all work well 5 g washing up liquid 2 g salt 100 ml tap water 100 ml of ice-cold alcohol (isopropyl alcohol can usually be found at the pharmacists); put in a freezer for at least 30 mins before starting the experiment Access to hot water – about 60 °C Sieve or coffee filter paper Two glass beakers (or old jam-jars) Several bowls of different sizes, including a large bowl for making a water bath Freshly ground papaya juice/ pineapple juice Procedure: o Mash up the fruit/leaves of your choice in a bowl. This experiment uses spinach leaves. o In a separate bowl, mix the washing up liquid, salt and tap water. Stir gently trying to avoid making too many bubbles in the mixture. This is your extraction buffer. o Add the fruit to the extraction buffer and mix again. Mash your sample as much as you can, but again, try to avoid making too many bubbles. o Make a water bath with a temperature of about 60 °C. (A large washing up bowl works well for this.) Leave the extraction mixture to incubate for 15 minutes. o After 15 minutes, filter your mixture through a fine sieve or coffee filter. This will remove all the solid material that you don’t want. You should be left with a clear(ish) liquid. o Take the ice-cold alcohol and very slowly, drop by drop, pour it down the inside of the container with your fruit mixture. What you want to do is produce a layer of the alcohol floating on top of the mixture. o At the interface between the alcohol and the mixture, you should see a white cloud-like substance forming. Use a hook (a bent paperclip would work) to slowly draw the DNA up and out of the solution. Observations: Material used- Spinach leaves Result: DNA was successfully extracted from spinach leaves EXPERIMENT 8 Objective: To retrieve more information about the drug molecules, drug targets, enzymes and pathways related to drugs. Theory: Drug is a chemical molecule that can interact and bind to a target and control the function biological receptors to control the disease. Proteins are the important biological receptors which interact with the other biological molecules to maintain various cellular functions. Drugs have a specific activity that goes and binds to the target and can activate/inhibit the reactions in a proper manner. To find more about the drug molecules, their target molecules and the drug enzymatic reactions and the drug involvement in a specific pathway can easily found using different databases like Drugbank. Drugbank is a freely accessible, web enabled, fully query based database. It contains a data like structure and activity of a drugs and structure/function/sequence of a protein molecule. Drugbank is unique bioinformatics and cheminformatics database, having the details of drug molecules and their target molecules. It gives well developed concepts search and also comparisons from medicinal chemistry. Database will be updated by semi-annually. Drugbank database contains 6711 drug entries. It includes 1447 FDA-approved small drugs, 131 FDA-approved protein/peptide drugs, 85 nutraceuticals and 5080 experimental drugs. Additionally, 4227 non-redundant protein sequences are linked to these drug entries. Each DrugCard entry contains more than 150 data fields with half of the information being devoted to drug/chemical data and the other half devoted to drug target or protein data. Searching through drug bank can also be supported with the help of logical operators. Keeping the query word in quotes can help to search exact match, in a search by giving “acetic acid” will allow search for only “acetic acid” and not its similar matches. Another type of search can be done by using wild cards is by giving * with the query word, the result would be hits which starts with the query word. In Drugbank browse option one can get the drug molecules by using “Drug browse”. It allows the user to get all the drug molecules which has been stored in the database by alphabetically with an information like Drugbank ID, CAS number, Molecular weight, Structure, Categeories, Therapeutic indication. “Pharma browse “ allows the user to find the drug molecules by categeory wise. Geno browse gives the chemical molecules with Drug name, with which enzyme it is going to bind, SNPs, all the adverse reactions and references belongs to the Drug molecule. “pathway Browse” allows one to search the pathway which is going to affect by the drug molecule. “Class Browse” allows one to search the drug classes by names. “Association browse” allows user to find the name of the drug, Genename , which species it belongs and its specific function. Drug bank gives the details about the drugs with information like: Table 1: Information regarding Drugs. Generic Name name DrugBank ID drugbank_id AHFS Code ahfs_code ATC Code atc_code Absorption absorption Affected Organisms organism Chemical Formula formula Chemical Name iupac IUPAC Clearance clearance DPD ID (DIN) dpd_id Description description Dosage Form dosage_form Dosage Route dosage_route Drug Group group Drug Type type Drug-Food Interaction food_interaction Genbank ID genbank_id Guide to guide_to_pharmacology_id Pharmacology ID H2O Solubility experimental_water_solubility (experimental HET ID het_id Brands brand CAS Number cas_number Caco2 Permeability experimental_caco2_permeability (experimental) Category category ChEBI ID chebi_id Half Life half_life ID id IUPHAR ID iuphar_id InChI Identifier inchi InChI Key inchikey Indication indication KEGG Compound kegg_compound_id ID KEGG Drug ID kegg_drug_id LogP (experimental) experimental_logp LogP (predicted) predicted_logp LogS (experimental) experimental_logs LogS (predicted) predicted_logs Mechanism Action of mechanism_of_action Melting Point (°C) melting_point Metabolism metabolism Mixture Names Brand Mixture Ingredients Molecular (average) mixture_name mixture_ingredient Weight average_mass PDB ID pdb_id PDRhealth Link pdrhealth_link Pathway ID pathway_smpdb_id SMPDB Pathways pathway_name PharmGKB ID pharmgkb_id Pharmacodynamics pharmacodynamics Protein Binding protein_binding PubChem Compound ID pubchem_compound_id Route Elimination of route_of_elimination RxList Link rxlist_link SMILES smiles Secondary secondary_id Accession Number State state Synonyms synonym Target ID target_id Toxicity toxicity pKa/Isoelectric Point pka_isoelectric_point UniProt Name uniprot_name UniProt ID uniprot_id Wikipedia Link wikipedia_link Observations: 1. Azithromycin: link- https://go.drugbank.com/drugs/DB00207 Generic Name Azithromycin DrugBank ID DB00207 52:04.04 — Antibacterials AHFS Code 08:12.12.92 — Other Macrolides ATC Codes J01RA07 — Azithromycin, fluconazole and secnidazole J01RA — Combinations of antibacterials J01R — COMBINATIONS OF ANTIBACTERIALS J01 — ANTIBACTERIALS FOR SYSTEMIC USE J — ANTIINFECTIVES FOR SYSTEMIC USE S01AA26 — Azithromycin S01AA — Antibiotics ATC Code S01A — ANTIINFECTIVES S01 — OPHTHALMOLOGICALS S — SENSORY ORGANS J01FA10 — Azithromycin J01FA — Macrolides J01F — MACROLIDES, LINCOSAMIDES AND STREPTOGRAMINS J01 — ANTIBACTERIALS FOR SYSTEMIC USE J — ANTIINFECTIVES FOR SYSTEMIC USE Absorption Affected Organisms Bioavailability of azithromycin is 37% following oral administration. Absorption is not affected by foo Macrolide absorption in the intestines is believed to be mediated by P-glycoprotein (ABCB1) efflux transporters, which are known to be encoded by the ABCB1 gene 4. Humans and other mammals Chemical Formula Chemical IUPAC Name Clearance C38H72N2O12 (2R,3S,4R,5R,8R,10R,11R,12S,13S,14R)-11-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6- methyloxan-2-yl]oxy}-2-ethyl-3,4,10-trihydroxy-13-{[(2R,4R,5S,6S)-5-hydroxy-4-methoxy-4,6dimethyloxan-2-yl]oxy}-3,5,6,8,10,12,14-heptamethyl-1-oxa-6-azacyclopentadecan-15-one Mean apparent plasma cl=630 mL/min (following single 500 mg oral and i.v. dose) DRG-0104 DPD ID (DIN) Azithromycin is a broad-spectrum macrolide antibiotic with a long half-life and a high degree of tissue penetration 3. It was initially approved by the FDA in 1991. It is primarily used for the treatment of respiratory, enteric and genitourinary infections and may be use instead of other macrolides for some sexually transmitted and enteric infections. It is structurally related to erythromycin. Description Azithromycin [9-deoxo-9a-aza-9a-methyl-9a-homoerythromycin] is a part of the azalide subclass of macrolides, and contains a 15-membered ring, with a methyl-substituted nitrogen instead of a carbonyl group at the 9a position on the aglycone ring, which allows for the prevention of its metabolism. This differentiates azithromycin from other types of macrolides. In March 2020, a small study was funded by the French government to investigate the treatment of COVID-19 with a combination of azithromycin and the anti-malaria drug hydroxychloroquine. The results were positive, all patients taking the combination were virologically cured within 6 days of treatment, however, larger studies are required.9 Dosage Form Drug Group Anti-Bacterial Agents Anti-Infective Agents Antibacterials for Systemic Use Antiinfectives for Systemic Use Drug Type Small Molecule Drug-Food Interaction Take on an empty stomach. Take at least 1 hour before or 2 hours after meals. Genbank ID ABCB1 Guide to Pharmacology ID MQTOSJVFKKJCRP-BICOPXKESA-N H2O Solubility (experimental 0.514 mg/mL CP 62993 HET ID Brands Act Azithromycin UniProt Name Protein-arginine deiminase type-4 UniProt ID http://www.uniprot.org/uniprot/Q9UM07 Wikipedia Link https://en.wikipedia.org/wiki/Azithromycin 2. Folic acid: 3. Mebutizide: 4. Ibuprofen: EXPERIMENT 9 Aim To prepare a temporary mount of onion root tip to study mitosis. Theory All organisms are made of cells. For an organism to grow, mature and maintain tissue, new cells must be made. All cells are produced by division of pre-existing cells. Continuity of life depends on cell division. There are two main methods of cell division: mitosis and meiosis. In this tutorial we will learn about mitosis. What is Mitosis? Mitosis is very important to life because it provides new cells for growth and replaces dead cells. Mitosis is the process in which a eukaryotic cell nucleus splits in two, followed by division of the parent cell into two daughter cells. Each cell division consists of two events: cytokinesis and karyokinesis. Karyokinesis is the process of division of the nucleus and cytokinesis is the process of division of cytoplasm. Events during Mitosis 1. Prophase: 1. Mitosis begins at prophase with the thickening and coiling of the chromosomes. 2. The nuclear membrane and nucleolus shrinks and disappears. 3. The end of prophase is marked by the beginning of the organization of a group of fibres to form a spindle. 2. Metaphase 1. The chromosome become thick and two chromatids of each chromosome become clear. 2. Each chromosome attaches to spindle fibres at its centromere. 3. The chromosomes are arranged at the midline of the cell. 3. Anaphase 1. In anaphase each chromatid pair separates from the centromere and move towards the opposite ends of the cell by the spindle fibres. 2. The cell membrane begins to pinch at the centre. 4. Telophase 1. Chromatids arrive at opposite poles of cell. 2. The spindle disappears and the daughter chromosome uncoils to form chromatin fibres. 3. The nuclear membranes and nucleolus re-form and two daughter nuclei appear at opposite poles. 4. Cytokinesis or the partitioning of the cell may also begin during this stage. The stage, or phase, after the completion of mitosis is called interphase. It is the non dividing phase of the cell cycle between two successive cell divisions. Mitosis is only one part of the cell cycle. Most of the life of a cell is spent in interphase. Interphase consist of three stages call G1, S and G2. Mitosis in Onion Root Tip The meristamatic cells located in the root tips provide the most suitable material for the study of mitosis. The chromosome of monocotyledonous plants is large and more visible, therefore, onion root tips are used to study mitosis. Based on the kind of cells and species of organism, the time taken for mitosis may vary. Mitosis is influenced by factors like temperature and time Observations: 40X (Low Power) 100X (High Power) Result: Mitosis in onion root tip cells was successfully studied at low (40X) and high (100X) magnification. EXPERIMENT 10 Aim: To find the acid value of given sample of coconut oil Theory: Rancidity may occur in CMM samples upon storage especially when CMM contains high content of fatty acid or fatty oils. The decomposed components such as free fatty acids, peroxides, low molecular weight aldehydes and low molecular weight of ketones are produced. This would result in distinctive smell and affect the quality of the CMM samples. In view of this, acid value which is defined as the number of mg of potassium hydroxide required to neutralize the free acid in 1g of fat, fatty oil or other related substances is determined to assess the rancidity of the CMM samples. Sodium hydroxide may also be used. Reagents: Coconut oil, Phenolphthalein indicator, Sodium hydroxide/ potassium hydroxide titrant, Ethanol-ether solution Method and procedure: o Take sample of coconut oil (2.5 g) in a conical flask (250mL) o Weigh accurately 0.56g of KOH and place it in a 1000-mL volumetric flask and make 100 mL solution with distilled water. o Prepare a 50mL mixture of ethanol and diethyl ether (1:1, v/v). Dissolve the coconut oil in the mixture. Shake it well. If necessary, reflux the mixture gently until the substance is completely dissolved. o Standardize the NaOH/ KOH solution prepared with potassium hydrogen phthalate. o The solution of KOH prepared was 0.1M and was successfully standardized. o Titrate the ethanol mixture with KOH till using phenolphthalein indicator. This is the blank o Titrate the sample with potassium hydroxide titrant until pink coloration can be observed which persists for 30 s. This is the reading for the sample called test. (KOH) Observations: Weight of oil: 2.5 g Average blank reading: 0.9 mL Average test reading: 1.0 mL Volume of KOH used by coconut oil sample: (1-0.9) = 0.1 mL Acid Value: (0.1 mL × 5.6)/ 2.5 = 0.2244 mg Result: Acid value for the given sample of coconut oil was found to be 0.2244 mg KOH.