Chapter 8: From DNA to Proteins (DAY ONE) What is DNA? • Your “genetic” information (___________________________) • ___________________________________________________________________ • DNA is an example of a nucleic acid which is an organic compound/major macromolecule • The monomer (basic building block) of DNA is a ___________________________________ many nucleotides join to form a long chain of DNA. Nucleic Acids • NUCLEIC ACIDS are built from subunits called ____________________ Overview: Structure of DNA • DNA is a long macromolecule made up of units called nucleotides. Each _______________________________________ is made up of 3 basic parts: ▪ a _____________________________________ (DEOXYRIBOSE is the sugar in DNA) ▪ a _____________________________________ ▪ a _____________________________________ • The function of DNA is to _________________________________________ genetic information! • SUGAR in DNA is_______________________________ Deoxyribonucleic Acid ● _____________________________ STRANDED ● Backbone (sides of ladder) made of _______________________and _______________________ DNA Structure: What does DNA look like? ● Classic Shape: “____________________________________________” ● The ___________________________________ of the “ladder” are made up of alternating ________________________________________________________. ● The “steps” or ___________________________________ of the “ladder” are made of 4 major ________________________________________: ● ▪ Adenine 3. Cytosine ▪ Thymine 4. Guanine When looking at the Nitrogen Bases…. ● __________ always pairs with __________ ● __________ always pairs with __________ Structure of DNA: Closer Look ● There are 4 kinds of nitrogenous bases in DNA o The __________________________ (larger, double rings) ▪ A = ___________________ ▪ o G = __________________ The ________________________________ (smaller, single rings) ▪ C = __________________________ ▪ T = __________________________ Nitrogenous Bases – Steps of a Ladder ● ___________________________________ (2 rings) ● ___________________________________ (1 ring) Double Helix ● A double helix looks like a twisted ladder or _____________________________________ o The 2 strands of the double helix are held together by ________________________________ between adenine and thymine and between guanine and cytosine ▪ __________________________ always pair ▪ __________________________ always pair – this is known as the principle of __________________________________ base-pairing rules ▪ These are known as _____________________________ rules Rosalind Franklin ● At the same time of Watson and Crick, Franklin and her aide Maurice Wilkins were studying DNA. ● They used ____________________________ crystallography ● When DNA is bombarded with x-rays, atoms in DNA diffract on the x-rays in a pattern than can be captured on film. ● Her x-rays showed an ______________________ surrounded by a circle James Watson and Francis Crick Double Helix ● Developed an accurate model of DNA’s three-dimensional model called a ____________________________ ● Published their findings in ______________________, to show their double helix model o Two strands of DNA wind around each other like a ______________________________ o Strands are _____________________________________ Chromosome Structure in Eukaryotes ● DNA is:___________________________________________________________; Found in ______________________ ● Eukaryotic chromosomes are made of ________________ & ___________________called ______________________ ● Together the DNA & histone proteins forms a bead-like structure called a _____________________________________ ● Nucleosomes pack together to form thick coiled fibers. When cell is NOT dividing, these fibers are spread out in nucleus as __________________________________. (Allows reading of code) ● When cell gets ready to divide, the fibers pack even more tightly to form _____________________________.(Makes it easier to move DNA during mitosis) DNA Replication: Why Replicate? ● In preparation for cell division (________________________________ the ____________________________________ of Interphase), a cell must duplicate its genetic info (DNA) to pass on to the new daughter cells. Overview: DNA Replication ● Replication __________________________ the genetic information. ● ________________________________________ model suggested a way that DNA could be copied. ● Single DNA strand can serve as a ___________________________, or pattern, for a new strand. o Process by which DNA is copied during the cell cycle is called ____________________________________. o Replication assures that every cell has a _____________________________ set of _________________________________ genetic information. o Remember, DNA is divided into ________________ chromosomes that are replicated during the cell cycle. ● Each strand of the DNA double helix has all the information needed to _________________________________ the other half by the mechanism of base pairing ● Because each strand can be ______________________________________________ the other strand, the strands are said to be complementary. Duplicating DNA ● Before a cell divides, it duplicates its DNA in a copying process called ___________________________________ o During DNA replication, the DNA molecule: ▪ Separates into ___________ strands ▪ Produces __________________________ complementary strands following the rules of base pairing o Each strand of the double helix of DNA serves as a _________________________, or model, for the new strand How is DNA copied? ● The structure of DNA explains how it can be copied. Each strand has all the info needed to construct the _________________________________other half. If strands are separated, _________________________ rules allow you to fill in the complementary bases. Complementary Base Pairing ● ____________________________________________ ● ____________________________________________ ● So a complementary strand would look like this o Therefore, the strand ______________________________________ will replicate as: _______________________________________ DNA Replication ● Sites where strand separation and replication occur are called ________________________________ Replication Steps 1. Enzymes “unzip” molecule by breaking__________________________________ that hold the strands together and unwind it. 2. _________________________________________ joins nucleotides using original strand as template and ___________________________________________for errors. 3. Copying happens in ____________________________ directions along the two strands & in __________________________ places at once. How Replication Occurs: ● DNA replication is carried out by a series of ___________________________________: o These enzymes _____________________________________________________________ other functions o Each strand then serves as a template for the attachment of ________________________________________________________ 1. This is known as a ______________________________________________ process because old strands are used to make new strands 2. The result is ___________________________________________ that are identical, each one having one original strand and one new strand Chapter 8: From DNA to Proteins (DAY TWO) RNA • _______________________________________________________ • Chain of nucleotides, each made of _________________________________________________________________________________ containing base • • Differs from DNA by: – Sugar is _________________________________ – Has ___________________________________ instead of thymine – Is a _____________________________ stranded structure RNA IS USED TO ____________________________ PROTEINS – Remember: proteins are built from _______________________________________ – Protein synthesis occurs on _____________________________________________ Base Pairs in RNA • __________________________________________ • __________________________________________ • THERE IS NO __________________ IN RNA! • The 3 types of RNA • ______________________________ = (messenger) codes for polypeptides • ______________________________ = (ribosomal) makes up ribosomes. – • RIBOSOMES are the protein builders!!! ______________________________ = (transfer) brings the amino acids to the ribosome during protein synthesis 2 Stages in Making Proteins – ______________________________________________ – using DNA template to make mRNA strand • – Writing the code ______________________________________________ – using mRNA strand to create polypeptides • Reading the code TRANSCRIPTION: _______________________________________________________ ● DNA is in the nucleus ● Proteins are made in the cytoplasm • Where? _________________________________________________ Transcription: DNA ______________________________________ ● This is the process by which mRNA is produced/written (transcribed) from DNA. This process occurs in the nucleus, because DNA is TOO LARGE to leave the _______________________________________. The Major Steps of Transcription 1. ___________________________ gets unzipped by____________________________________________. 2. The __________________________________ reads along one DNA strand and uses it as a template, reading one ______________________ at a time. – _________________________________ are groups of 3 nucleotides that code for a specific amino acid. – You can think of _________________________ as “__________________________” in a sentence. Each __________________________________________________________; each _____________________ (which are made of nitrogen bases) = a _____________________________; each codon (or word) means something in the mRNA sentence…the ________________________________________ code for an _______________________________________________!!!! • “___________________________” codon = _________________________ (Methionine) • “___________________________” codons = _________________________________________ 3. __________________________________is produced/ __________________________________ with the complimentary nucleotides. 4. The polymerase keeps making the _______________________ until a “______________________________” codon is reached. 5. When the “stop” is reached, the new strand of ____________________________________ breaks away, leaves the nucleus through the nuclear pore, and _______________________________ to the ________________________________. This is where protein synthesis begins. 6. The next major process of translation will occur at the ribosome, in the cytoplasm of the cell. Transcription: You be the RNA polymerase! ● DNA Strand = _____________________________________________ ● What is the complementary mRNA? o _________________________________________________ Translation: (cell’s way of ________________________________________ the mRNA message) ● Happens on _______________________________________ ● Transfer RNA (tRNA) __________________________________ and brings in the correct amino acid ● Process that ______________________________________________, or translates, an mRNA message into a polypeptide. o ● ● One or more polypeptides make up a protein. Remember, the “language” of nucleic acids uses four nucleotides: o DNA: ___________________________________________ o RNA: __________________________________________ “Language” of proteins, on the other hand, uses ______________ amino acids. o Amino acids are coded by mRNA bases sequences. Translation: ____________________________________________________________________________ ● The synthesis of polypeptides (PROTEINS) by the ribosome using the message carried by the mRNA. Steps of Translation 1. The _____________________________________________________ to the first codon of __________________________. 2. A _______________________________________________________ matches up to the first codon on the ________________ – this is always __________________________________________” – An anticodon is the complimentary base pair that matches the codon. For example, if the codon is ___________________, the anticodon is _________________________________. 3. The ________________________________ is carrying an ____________________________________. 4. The ribosome (________________________________) _____________________________ the _______________________ through and ______________________________ the next codon and _____________________________ up the correct _________________________________; bringing the next _______________________________________into line. 5. The ribosome binds the first and second amino acids together. 6. The _____________________________________________ after they “drop off” the amino acids. 7. This process occurs over and over until a ________________________________________ is met. 8. The result is a chain of polypeptides __________________________________________. The Genetic Code ● The dictionary of the genetic code = ______________________________________ mRNA codon chart ● 64 Codons – only _______________ amino acids ● ______________________________ Last letter can change without mutation… Ex: UUA & UUG both leucine Practice ● What amino acid does the codon UUU code for? ________________ ● What amino acid does the codon GAC code for? ________________ Start and Stop Codons – What’s a gene? ● A _______________________________ amino acid is found at the beginning of most proteins – _______________________________________. The codon for this is ____________________________. ● A ___________________________________ codon DOES _____________________ CODE FOR ANY AMINO ACID – it is the signal that the protein is complete and can be released… Translation: the basic concept 1) ______________________________ (ribosomal RNA) attaches to __________________________and starts reading the _________________________________ 2) ______________________________ (transfer RNA) – carries amino acids and attaches them to the growing protein chain 3) When protein production is complete, the ribosome releases the ___________________________ Translation: the basic concept continued…. • mRNA feeds into the ribosome – • ________________________________________ tRNA decodes the mRNA – How? ________________________________________________________________ • aa’s coded for by ____________________________ are attached to ______________________; • aa’s brought by tRNA link up to form a protein _________________________________________ _____________________________ carries DNA’s instructions • Central dogma of molecular biology: – ___________________________________ copies DNA – Transcription converts ________________________________ into an intermediate molecule, RNA – Translation interprets an RNA message into a string of amino acids, called a _____________________________. • Single or multiple polypeptides working together to form a _____________________________________. – ______________________________________________________ Chapter 8: From DNA to Proteins (DAY THREE) Mutations • Mutations are _______________________________________ in DNA that may or may not affect phenotype. • Mutations are any changes that take place in DNA: • • Can be spontaneous or caused by _______________________________________________ • Chemicals, high temperatures, UV light, • Radiation Can ___________________________________________ the genetic code, and be replicated when forming new body cells. • In sex cells, can be ___________________________________________ to offspring. • Mutations can be neutral, beneficial, or harmful • ex: Blue eyes – a mutation that occurred 6-10,000 years ago, can be traced back to one ancestor Point mutations • _________________________________________: change in single base pair of DNA • if does not affect the length of the code, will just change the amino acid in that position – _________________________________________ • if does change the length of the code, is called a frameshift mutation, and are two types: ________________________________ AND _______________________________ Some mutations affect a single gene, while others affect an entire chromosome. • A mutation is a change in an organism’s DNA. • Many kinds of mutations can occur, especially during _______________________________________. • A point mutation substitutes ___________________________________ for another; ____________________________ • Change in _____________________________ base pair of DNA • Many kinds of mutations can occur, especially during replication. • A frameshift mutation __________________________________________ a nucleotide in the DNA sequence. Chromosomal Mutations • Chromosomal mutations affect many genes. • Chromosomal mutations may occur during _____________________________________ o Gene duplication results from unequal _________________________________. Effects Chromosome Numbers and Chromosome Shapes 1. Mistakes in numbers of chromosomes: • _________________________________ -- members of a pair of homologous chromosome do not move apart properly – result in offspring that have – ________________________________ – abnormal chromosome number • Trisomy or Monosomy or Polyploidy 2. Mistakes in shape of chromosomes: a. _________________________________ – part of chromosome is broken off and lost completely b. _________________________________ – broken fragment of chromosome attaches to sister chromatid so section is repeated on that chromatid c. _________________________________ – when fragment reattaches to original chromosome but in reverse order d. _________________________________ – broken fragment attaches to a nonhomologous chromosome Mutations may or may not affect phenotype. • Chromosomal mutations tend to have a big effect. • Some gene mutations change phenotype. – A mutation may cause a ____________________________ stop codon. – A mutation may change protein _______________________ or the active site. – A mutation may change gene _________________________.