Senior High School NOT General Biology 1 Quarter 2 - Module 1 Energy Transformation Department of Education ● Republic of the Philippines 1 General Biology 1- Grade 11 Alternative Delivery Mode Quarter 2 - Module 1: Energy Transformation First Edition, 2020 Republic Act 8293, section 176 states that: No copyright shall subsist in any work of the Government of the Philippines. However, prior approval of the government agency or office wherein the work is created shall be necessary for exploitation of such work for profit. Such agency or office may, among other things, impose as a condition the payment of royalty. Borrowed materials (i.e., songs, stories, poems, pictures, photos, brand names, trademarks, etc.) included in this book are owned by their respective copyright holders. Every effort has been exerted to locate and seek permission to use these materials from their respective copyright owners. The publisher and authors do not represent nor claim ownership over them. Published by the Department of Education – Division of Cagayan de Oro Schools Division Superintendent: Dr. Cherry Mae L. Limbaco, CESO V Development Team of the Module Author: Romer T. Aguirre Reviewers: Jean S. Macasero, Shirley Merida, Duque Caguindangan, Eleanor Rollan, Rosemarie Dullente, Marife Ramos, January Gay Valenzona, Mary Sieras, Arnold Langam, Amelito Bucod Illustrators and Layout Artists: Jessica Bunani Cuňado, Kyla Mae L. Duliano Management Team Chairperson: Cherry Mae L. Limbaco, Ph.D., CESO V Schools Division Superintendent Co-Chairperson: Alicia E. Anghay, Ph.D., CESE Assistant Schools Division Superintendent Members Lorebina C. Carrasco, OIC-CID Chief Jean S. Macasero, EPS- Science Joel D. Potane, LRMDS Manager Lanie O. Signo, Librarian II Gemma Pajayon, PDO II Evelyn Q. Sumanda, School Head Cely B. Labadan, School Head Printed in the Philippines by Department of Education – Division of Cagayan de Oro City Office Address: Fr. William F. Masterson Ave Upper Balulang, Cagayan de Oro Telefax: (08822)855-0048 E-mail Address: cagayandeoro.city@deped.gov.ph 2 Senior High School Senior High School General Biology 1 Quarter 2 - Module 1: Energy Transformation This instructional material was collaboratively developed and reviewed by educators from public schools. We encourage teachers and other education stakeholders to email their feedback, comments, and recommendations to the Department of Education at action@ deped.gov.ph. We value your feedback and recommendations. Department of Education ● Republic of the Philippines 3 This page is intentionally blank 4 Table of Contents What This Module is About ....................................................................................................................... i What I Need to Know .................................................................................................................................. ii How to Learn from this Module .............................................................................................................. ii Icons of this Module ................................................................................................................................... iii What I Know ................................................................................................................................................iii Second Quarter Lesson 1: ATP-ADP Cycle What I Need to Know..................................................................................................... 12 What I know ..................................................................................................................... 13 What’s In............................................................................................................................ 14 What’s New ...................................................................................................................... .19 What Is It: Learning Concepts ................................................................................... .19 What’s More: Synthesizing Information .................................................................. .20 What I Have Learned…………………………………………………………………...20 What I Can Do: Performance Task…………………………………………………..20 Lesson 2: Photosynthesis What I Need to Know..................................................................................................... 21 What I know ...................................................................................................................... 22 What’s In: Learning Concepts..................................................................................... 22 What’s New ..................................................................................................................... 26 What Is It………………………………………………………………………………….27 What’s More………………………………………………………………………………28 What I Have Learned: .................................................................................................. 28 What I Can Do …………………………………….......................................... 28 Lesson 3: Cellular Respiration What I Need to Know..................................................................................................... 29 What I know ...................................................................................................................... 30 What’s In ………………………………………………………………………….30 303 5 What’s New…………………………………………………………………34 What Is It: Learning Concepts ................................................................... 35 What’s More: ........................................................................................... 37 What I Have Learned: .............................................................................. 38 What I Can Do……………………………………........................................40 Summary…………………………………………………………………………………. 40 Assessment: (Post-Test) ................................................................................................. 40 Key to Answers.............................................................................................................. 42 References ..................................................................................................................... 45 6 This page is intentionally blank 7 Module 1 Energy Transformation What This Module is About This module focuses on respiration and photosynthetic process as reactions that complements each other to enable life to survive. It will enhance your understanding of major features and events involved such as important steps in Calvin cycle, glycolysis, and Krebs cycle. At the end of this module, you will be able to have a deeper understanding on the importance of photosynthesis and cellular respiration to all forms of living things. In this module, you will study the important process of energy transformation that occurs at the cellular level of plants, animals, and microbial cells. This reaction is intervened by the energy known as adenosine triphosphate (ATP) using the mitochondria and the chloroplasts as the main cell organelles for the majority of cell types. This module has three (3) lessons: Lesson 1- ATP-ADP Cycle Lesson 2- Photosynthesis Lesson 3- Cellular Respiration What I Need to Know After going through this module, you are expected to: 1. Explain coupled reaction processes and describe the role of ATP in energy coupling and transfer (STEM_BIO11/12-IIa-j-1). 2. Explain the importance of chlorophyll and other pigments (STEM_BIO11/12-IIa-j-3). 3. Describe the patterns of (STEM_BIO11/12-IIa-j-4). electron flow through light reaction events 4. Describe the significant events of the Calvin Cycle (STEM_BIO11/12-IIa-j-5). 5. Differentiate aerobic from anaerobic respiration (STEM_BIO11/12-IIa-j-6). 6. Explain the major features and sequence the chemical events of cellular respiration (STEM_BIO11/12-IIa-j-7). 7. Distinguish major features of glycolysis, Krebs cycle, electron transport system, and chemiosmosis (STEM_BIO11/12-IIa-j-8). 8. Describe reactions that produce and consume ATP (STEM_BIO11/12-IIa-j-9). 9. Describe the role of oxygen in respiration and describe pathways of electron flow in the absence of oxygen (STEM_BIO11/12-IIa-j-10). 10. Explain the advantages and disadvantages of fermentation and aerobic respiration (STEM_BIO11/12-IIa-j-12). 8 How to Learn from this Module To achieve the learning competencies cited above, you are to do the following: • Take your time reading the lessons carefully. • Follow the directions and/or instructions in the activities and exercises diligently. • Answer all the given tests and exercises. Icons of this Module What I Need to This part contains learning objectives that Know are set for you to learn as you go along the module. What I know This is an assessment as to your level of knowledge to the subject matter at hand, meant specifically to gauge prior related knowledge This part connects previous lesson with that of the current one. What’s In What’s New An introduction of the new lesson through various activities, before it will be presented to you What is It These are discussions of the activities as a way to deepen your discovery and understanding of the concept. What’s More These are follow-up activities that are intended for you to practice further in order to master the competencies. What I Have Learned Activities designed to process what you have learned from the lesson What I can do These are tasks that are designed to showcase your skills and knowledge gained, and applied into real-life concerns and situations. II 9 What I Know PRE-ASSESSMENT MULTIPLE CHOICE: Directions: Read and understand each item and choose the letter of the correct answer. Write your answers on a separate sheet of paper. __1. Majority of the CO2 is released during A. Glycolysis B. Citric acid cycle C. Electron transport chain D. Oxidative phosphorylation __2. Cellular respiration processes that do not use O2 are called A. Heterotrophic organism B. Anaerobic organism C. Aerobic organism D. Anabolic __3. The positively charged hydrogen ions that are released from the glucose during cellular respiration eventually combine with _________ ion to form _____________. A. another hydrogen, a gas B. a carbon, carbon dioxide C. an oxygen, water D. a pyruvic acid, lactic acid __4. The Krebs cycle (also known as citric acid cycle or tricarboxylic acid) and ETC are biochemical pathways performed in which eukaryotic organelle? A. Nucleus B. Ribosome C. Chloroplast D. Mitochondrion __5. Anaerobic pathways that oxidize glucose to generate ATP energy by using an organic molecule as the ultimate hydrogen acceptor are called A. Fermentation B. Reduction C. Krebs cycle D. Electron pumps __6. When skeletal muscle cells function anaerobically, they accumulate the compound ________, which causes muscle soreness. A. Pyruvic acid B. Malic acid C. Carbon dioxide D. Lactic acid __7. Each molecule of fat can release _______ of ATP, compared with a molecule of glucose. A. smaller amounts B. the same amount C. larger amount D. only twice the amount __8. In complete accounting of all ATPs produced in aerobic respiration, a total of ____ATPs: _____from the ETC, _____from glycolysis, and _____ from the Krebs cycle. A. 36, 32, 2, 2 B. 38, 34, 2, 2 10 C. 36, 30, 2, 4 D. 38, 30, 4, 4 __9. The chemical activities that remove electrons from glucose result in the glucose being A. reduced B. oxidized C. phosphorylated D. hydrolyzed __10. Which of the following is NOT true of the citric acid cycle? The citric acid cycle A. includes the preparatory reaction B. produces ATP by substrate-level ATP synthesis C. occurs in the mitochondria D. is a metabolic pathway, as is glycolysis 11 Lesson 1 ATP-ADP Cycle What I Need to Know Performance Standards: Prepare simple fermentation setup using common fruits to produce wine or vinegar via microorganisms. Introduction: Adenosine triphosphate (ATP) is the energy currency used throughout the cell. ATP provides energy for the cell to do work, such as mechanical work, transport substances across the membrane, and perform various chemical reactions. ATP is composed of phosphate groups, a ribose and adenine. In the structure of ATP, there are three phosphate groups attached to adenosine. The last two bonds on the phosphate groups contain especially high energy and are therefore very useful for doing work within living cells. The bonds that hold phosphate groups are easily broken by hydrolysis which results in the release of energy. Fig. 1a. Adenosine triphosphate (ATP) to adenosine diphosphate (ADP) transformation 12 What I Know Directions: Write the letter of the best answer on a separate sheet of paper. _____1. A structure that composed of sugar ribose, nitrogen base adenine and a chain of 3-phosphate groups. a. ADP b. ATP c. NADH+ d. Nucleus _____2. The process of breaking down bonds between the phosphate groups; this happens when a water molecule breaks the terminal phosphate bond a. Hydrolysis of ATP b. Phosphorylation c. Oxidation d. Reduction _____3. A separation technique used to identify various components of mixtures based on the differences in their structure and/or composition. a. Phosphorylation b. Dephosphorylation c. Hydrolysis d. Chromatography _____4. Are substances that absorb visible light; different pigments absorb light of different wavelengths. a. Chlorophyll b. Photon c. Pigments d. Light energy _____5. The greenish pigment found in the thylakoid membrane inside the chloroplast of a plant cell. a. Light energy b. Chlorophyll c. Photon d. Pigments 13 What’s In Adenosine Triphosphate (ATP) • Structure composed of: sugar ribose, nitrogen base adenine and a chain of 3- phosphate groups • Mediates most energy coupling in cells • Powers cellular work • 3 main kinds of work of a cell: chemical work, transport work and mechanical work. These are possible through energy coupling, where the cells use and exergonic process to drive an endergonic reaction. • chemical work: synthesis of polymers from monomers (pushing of endergonic reactions) • transport work: pumping of substances across membranes (against the direction of spontaneous movement) • mechanical work: beating of cilia, contraction of muscles • also used to make RNA (since ATP is used as one of the nucleoside triphosphate Hydrolysis of ATP • process of breaking down bonds between the phosphate groups • this happens when a water molecule breaks the terminal phosphate bond • HOPO32-, abbreviated P I leaves ATP • Forming Adenosine diphosphate (ADP) • Energy is released. This comes from the chemical change of the system state of lower free energy and NOT from the phosphate bonds. • Hydrolysis releases so much energy because of the negative charges of the phosphate groups. These charges are crowded together and their mutual repulsion contributes to the instability of that region of the ATP. The energy equivalent of the triphosphate tail of ATP is compared to a compressed spring. Fig. 1.b. The Hydrolysis of ATP 14 How the Hydrolysis of ATP Perform Work • Proof that ATP releases heat: in a test set up, the hydrolysis of ATP releases energy in the form of heat in the surrounding water. • Most of the time when an animal is exposed in a cold environment, the reaction of the body is through shivering. In this reaction of the organism, shivering uses ATP during muscle contraction to warm the body. Since it will also be a disadvantage for organisms to generate heat during ATP hydrolysis, in order to maintain the living conditions inside the cell, the energy released during ATP hydrolysis is used by proteins to perform work: chemical, transport and mechanical • Hydrolysis of ATP leads to change in the shape of protein and in its ability to bind to another molecule. Phosphorylation (ADP to ATP) and dephosphorylating (ATP to ADP) promote crucial protein shape changes during important cellular process Fig. 1.c. Phosphorylation (ADP to ATP) and dephosphorylation (ATP to ADP) The Fluidity of the membrane is due to temperature, the configuration of the unsaturated fatty acid tails (some kinked or form a sharp twist by double bonds), the presence of cholesterol embedded in the membrane, and the mosaic nature of the The Regeneration of ATP • ATP is a renewable it can be regenerated by the addition of phosphate to ADP • Catabolism (exergonic) provides the free energy to phosphorylate ADP. 15 • ATP formation is not spontaneous, so there is a need to use free energy for the process to work. • ATP cycle is the shuttling of inorganic phosphate and energy. • It couples the cell’s energy yielding processes (exergonic) to energy consuming process (endergonic) • ATP regeneration happens very fast (10M molecules of ATP used ad regenerated per second) • If ATP could not be regenerated by phosphorylation of ADP, HUMANS would use nearly their body weight in ATP each day. Fig. 1.d. The ATP cycle • As temperatures cool, membranes switch from a fluid state to a solid state. • The temperature at which a membrane solidifies depends on the types of lipids. • Membranes rich in unsaturated fatty acids are more fluid than those rich in saturated fatty acids. (Fig. 7.f.) The Importance of Chlorophyll and Other Pigments Terminology: Chromatography is a separation technique used to identify various components of mixtures based on the differences in their structure and/or composition. Pigments are substances that absorb visible light. Different pigments absorb light of different wavelengths. 16 Light, as it encounters an object, is either reflected, transmitted, or absorbed. Visible light, with a wavelength of 380–750nm, is the segment in the entire range of electromagnetic spectrum that is most important to life on earth. It is detected as various colors by the human eye. The color that is not absorbed by pigments of objects is transmitted or reflected and that is the color of the object that we see. Fig. 1.e. The Electromagnetic Spectrum Pigments are the means by which plants capture sun’s energy to be used in photosynthesis. However, since each pigment absorbs only a narrow range of wavelength, there is usually a need to produce several kinds of pigments of different colors to capture more of sun’s energy. Chlorophyll is the greenish pigment found in the thylakoid membrane inside the chloroplast of a plant cell. Chlorophyll absorbs blue and red light while it transmits and reflects green light. This is why leaves appear green. There are several kinds of chlorophyll. Among these, chlorophyll a plays the most important role in photosynthesis. It directly participates in converting solar energy to chemical energy. Other pigments in the chloroplast play the part of accessory pigments. These pigments can absorb light and transfer the energy to chlorophyll a. One of these accessory pigments is chlorophyll b. Some carotenoids also contribute energy to chlorophyll a. Other carotenoids, however, serve as protection for chlorophyll by dissipating excessive energy that will otherwise be destructive to chlorophyll. 17 Structure of chlorophyll • Head—a flat hydrophilic head called porphyrin ring. It has a magnesium atom at its center. Different chlorophylls differ on the side groups attached to the porphyrin. • Tail—a lipid-soluble hydrocarbon tail. How does photoexcitation of chlorophyll happen? 1. A chlorophyll molecule absorbs photon or light energy. 2. An electron of the molecule in its normal orbital, said to be in its ground state, will be elevated to an orbital of a higher energy. The molecule is now in an excited state. The molecule only absorbs photon that has the energy that is equal to the energy needed for it to be able to elevate from the ground state to the excited state. 3. The excited state is unstable. Hence, excited electrons drop back down to the ground state immediately after, releasing energy in the form of heat and photon. This happens in isolated chlorophyll molecules. However, chlorophyll molecule that is found in its natural environment in the thylakoid membrane forms a photosystem together with proteins and other organic molecules to prevent the loss of energy from the electrons. Fig. 1.f. The Photoexcitation of Chlorophyll Photosystem A photosystem is an aggregate of pigments and proteins in the thylakoid membrane responsible for the absorption of photons and the transfer of energy and electrons. It is composed of: • Light-harvesting complex— is also called the ‘antenna’ complex and is consisted of several different pigments (chlorophyll a, chlorophyll b, and carotenoids) bounded with proteins. When a pigment molecule absorbs a photon, energy is passed on from one pigment molecule to another pigment molecule until the energy reaches the reaction center. • Reaction-center complex—is composed of a pair of chlorophyll a and a primary electron acceptor. The primary electron acceptor is a specialized molecule that is able to accept electrons from the pair of chlorophyll a. The pair of chlorophyll a in the reaction-center is also specialized because they are capable of transferring an 18 electron to the primary electron acceptor and not just boosting the electron to a higher energy level. There are two types of photosystem: • Photosystem II—was discovered later after the discovery of Photosystem I, but functions first in the light reaction of photosynthesis. The chlorophyll a in the reactioncenter of Photosystem II effectively absorbs light with a wavelength of 680nm and thus called P680. • Photosystem I—was discovered first. Its reaction-center has a chlorophyll a called P700 because it is effective in absorbing light with a wavelength of 700nm. What’s New • Visual and Listening Activity: 1. Research videos on the Forms of Energy, Transformation of Energy, Free energy and metabolism and ATP- structure and function. 2. Watch and Listen carefully to the video and be able to recognize and relate to each attributes of the energy transformation. 3. Reflect on your life experiences and relate them to the lesson in the video so that you will be able to make an analogy relating the concepts under ATP. 4. Write your answer on a long bond paper or newsprint. What Is It • Q & A Activity: 1. What are the different forms of energy? 2. What are the laws of energy transformation and cite examples? 3. How does the cell go about the continuous release of heat during ATP hydrolysis? (Write your answers on a long bond paper or newsprint.) 19 What’s More • Q and A Activity: 1. How do plants cope with the change in season? Give a detailed description and explanation. 2. How do plants capture the sun’s energy? 3. What happens to light when it hits an object? What I Have Learned • Learning Process Activity: Provide the best answer in the blank. 1. 2. 3. 4. 5. What wavelength of light is most important to life on earth? What color/s of light does chlorophyll absorb? What color does it reflect? What composes a photosystem? In what part of the photosystem does the first step of light reaction take place? Differentiate the two types of photosystem. What I Can Do • Performance Activity: Construct a final draft sketch on the photoexcitation of Chlorophyll. Write your sketch on a long bond paper/newsprint. 20 Lesson Photosynthesis 2 What I Need to Know Introduction: Autotrophic organisms use the pigment chlorophyll to harvest solar energy to produce the stored energy as chemical bonds of ATP and carbohydrates. In eukaryotes, chlorophyll is associated with thylakoid membranes of the chloroplast. Photosynthesis in eukaryotes involves three essential processes: 1. Energy absorption from sunlight via pigments during light-dependent reaction 2. Reactivation of reaction center 3. Carbohydrates production by carbon fixation during dark reaction. Fig. 2a. Chemical reaction for photosynthesis 21 What I Know Chemical reactions for photosynthesis: Which groups participate in the reaction? Which groups are released? 6 CO2 + 6 H2O + sunlight C6H12O6+ 6 O2 PRIOR KNOWLEDGE: Definition of Terms 1. Light reactions 2. Noncyclic electron flow 3. Cyclic electron flow 4. Plastoquinone (Pq) 5. Plastocyanin (Pc) 6. ATP 7. Photophosphorylation 8. Ferredoxin 9. NADP+ 10. NADPH 11. Chemiosmosis What’s In During PHOTOSYNTHESIS: • Energy from sunlight is harvested and used to drive the synthesis of glucose from CO2 and H2O. By converting the energy of sunlight to a usable form of potential chemical energy, photosynthesis is the ultimate source of metabolic energy for all biological systems. 22 • Photosynthesis takes place in two distinct stages. (A) In the light reactions, energy from sunlight drives the synthesis of ATP and NADPH, coupled to the formation of O2 from H2O. (B) In the dark reactions (named because they do not require sunlight), the ATP and NADPH produced by the light reactions drive glucose synthesis. • In eukaryotic cells, both the light and dark reactions of photosynthesis occur within chloroplasts—the light reactions in the thylakoid membrane and the dark reactions within the stroma. The two stages of photosynthesis: • Light reactions—use sunlight to initiate electron transfer, thereby reducing NADP+ to NADPH and splitting water to give off oxygen as a by-product. • form ATP through phosphorylation • take place in the thylakoids of the chloroplast • Calvin Cycle—sometimes referred to as ‘dark reactions’ because it does not require light energy for its processes to take place • incorporates CO2 into organic molecules through carbon fixation • uses NADPH and ATP to produce carbohydrate from the fixed carbon • takes place in the stroma of chloroplast • returns ADP, inorganic phosphate, and NADP+ to the light reactions Fig. 2.b. The Light Reactions . 23 Light Reactions Events 1. Light energy or photon is absorbed by a pigment molecule of the light-harvesting complex of Photosystem II and is passed on to other pigment molecules nearby until the energy makes it to the reaction center. In the reaction center, it is absorbed by the P680 pair of chlorophyll a. 2. The electron in this pair of chlorophyll a is raised to an excited state and is transferred to the primary electron acceptor. P680 loses its electron and becomes positively charged (P680+). 3. The positively charged molecule attracts electrons from a water molecule, resulting to the splitting up of H20 into two electrons, two hydrogen ions (H+), and an oxygen atom with the provision of light energy. The oxygen atom immediately combines with another oxygen atom to form an oxygen molecule (O2) which is then released outside the leaf through the stomata. 4. The excited electrons are then passed on from the primary electron acceptor to the electron carrier molecules through the electron transport chain until they reach Photosystem I. The electron carrier molecules involved here are plastoquinone (Pq), a cytochrome complex, and plastocyanin (Pc). 5. At each transfer, the electrons release small amounts of energy. This energy is used to pump hydrogen ions across the membrane. The splitting up of water molecules results to an uneven distribution of hydrogen ions in the stroma and the lumen. The H+ ions tries to equalize their distribution by moving from the lumen to the stroma through the aid of a membrane protein called ATP synthase. This is referred to as chemiosmosis. The movement of hydrogen ions through the ATP synthase channel triggers the synthesis of ATP from ADP. The ATP contains high-energy phosphate bonds. 6. Meanwhile, photon is also absorbed and energy is passed on from one pigment molecule to another until the energy reaches the reaction center complex of Photosystem I. The energy excites the electron present in the pair of P700 chlorophyll a located here. The excited electron is then transferred to a primary electron acceptor, making the P700 positively charged and now seeking electrons to fill up the missing ones. This is filled up by the electrons from Photosystem II that are passed on through the electron transport chain. 7. The photo-excited electron from the primary electron acceptor of Photosystem I enters another electron transfer chain, passing the electron to an iron-containing protein called ferredoxin (Fd). 8. An enzyme, the NADP+ reductase, then transfers the electron to NADP+ and stabilizes it by adding a proton (H+) to form NADPH. NADPH is then released to the stroma and becomes part of the Calvin Cycle. Cyclic Electron Flow Aside from the usual route of electron flow as described in the events of the light reactions (i.e., noncyclic or linear electron flow), photo-excited electrons may take a short-circuited route which utilizes Photosystem I but not 24 Photosystem II. The ferrodoxin goes back to the cycle and passes the electron to the cytochrome complex and to the Pc until it reaches P700 chlorophyll instead of transferring the electron to NADP+reductase. Due to this event, no NADPH is produced but ATP is still synthesized. Fig. 2.c. Cyclic Electron Flow 1. Oxidoreductase - catalyze redox reactions; dehydrogenases, oxidases, peroxidases, reductases. 2. Transferases - catalyze group transfer reactions; often require coenzymes. 3. Hydrolases - catalyze hydrolysis reactions. 4. Lyases - lysis of substrate; produce contains double bond. 5. Isomerases - catalyze structural changes; isomerization. The Calvin Cycle • also referred to as light-independent reactions or “dark reactions” • takes place in the stroma of the chloroplast • second stage of photosynthesis that is involved in the formation of sugar from CO2 using chemical energy stored in ATP and NADPH, the products of light reactions The Calvin Cycle Important points to know: • The sugar that is produced in the Calvin Cycle is not the six-carbon glucose that we are familiar with. This is formed later on. What is produced in the Calvin Cycle is a three-carbon sugar known as G3P or glyceraldehyde-3-phosphate. • The Calvin Cycle needs to ‘spin’ three times to make one molecule of G3P from three molecules of CO2. Three Phases of Calvin Cycle: Carbon Fixation • Carbon fixation is a process of incorporating an inorganic carbon molecule, CO2, into an organic material. 25 • In this phase, the CO2 molecule is attached to a five-carbon sugar molecule named ribulose biphosphate (RuBP) aided by an enzyme named rubisco or RuBP carboxylase. Rubisco is believed to be the most abundant protein in the chloroplast and maybe on Earth. • The resulting product, a six-carbon sugar, is extremely unstable and immediately splits in half. The split forms two molecules of a 3-phosphoglycerate (3-carbon). Reduction • A phosphate group (from ATP) is then attached to each 3-phosphoglycerate by an enzyme, forming 1,3-phosphoglycerate. • NADPH swoops in and reduces 1,3-biphosphogycerate to G3P. • For every six G3Ps produced by the Calvin Cycle, five are recycled to regenerate three molecules of RuBP. Only one G3P leaves the cycle to be packaged for use by the cell. • It will take two molecules of G3P to make one molecule of glucose. • The ADP and NADP+ that is formed during the Calvin Cycle will be transported back to the thylakoid membrane and will enter the light reactions. Here, they will be ‘recharged’ with energy and become ATP and NADPH. Regeneration of RuBP • Five molecules of G3P undergo a series of complex enzymatic reactions to form three molecules of RuBP. This costs the cell another three molecules of AT, but also provides another set of RuBP to continue the cycle. What happens to G3P after its release from the cycle? • Two G3Ps can combine together to form either glucose or fructose which are both are six-carbon sugar. • Glucose and fructose can be combined to form sucrose. • Glucose can be connected in chains to form starch. • G3Ps can also be used in lipid and protein synthesis. The cost of making carbohydrate: To make one molecule of G3P, the chloroplast needs: • 3 molecules of CO2 • 9 molecules of ATP • 6 molecules of NADPH What’s New • Visual and Listening Activity: 1. You can draw pictures of photosynthesis in a long bond paper/newsprint. You can also go to computer/printing shop by watching videos or sample pictures of Overview 26 of Photosynthesis, Overview of the Stages of the Calvin Cycle in Photosynthesis and make these pictures into tarpaulin type for long use. What Is It • Q & A Activity: 1. What are the two kinds of reactions in photosynthesis? 2. What are the basic stages of the Calvin cycle? 3. What are the reactants and products of photosynthesis? (Write your answers on a long bond paper/newsprint.) What’s More Directions: Fill-in the table below for the major events and features of photosynthesis. The option table is given for you to answer the needed materials and end products of photosynthesis. Major Events and Features of Photosynthesis REACTION NEEDED MATERIALS SERIES 1. Light-dependent reactions (take place in the a. thylakoid membrane) a. Photochemical reactions END PRODUCTS a. b. b. c. Chemiosmosis c. c. 2. Carbon fixation reactions (take place in stroma) 2 b. Electron transport 2 27 Available Choices a. Electrons b. NADPH, O2 e. Electrons, NADP+, H2O, electron acceptors f. Proton gradient, ADP + P, ATP synthase c. Light energy; pigments (chlorophyll) g. Carbohydrates, ADP + P, NADP+ d. ATP h. Ribulose bisphosphate, CO2, ATP, NADPH, necessary enzymes What I Have Learned • Learning Process Activity: Write T if the statement is true and F if the statement is false. ______1. In photosynthesis, water is oxidized and oxygen is released. ______2. Has electron transport chain located within the ribosomes, where ATP is produced by chemiosmosis. ______3. Has enzyme-catalyzed reactions within the semi-fluid interior. ______4. Water is reduced to a carbohydrate. ______5. In photosynthesis, oxygen is reduced to water. What I Can Do Performance Task: For this activity, you have to gather materials that will help build a three-dimensional model that represents the events or phases of the Calvin cycle. You may use clay, Styrofoam balls, beads, or recyclable materials. The outputs will be presented to the teacher. 28 Lesson Cellular Respiration 3 What I Need to Know Cellular Respiration In cellular respiration, glucose is converted to pyruvic acid which can enter either through aerobic respiration or anaerobic respiration. In aerobic respiration, pyruvic acid molecules enter the mitochondria and through a series of chemical reactions known as the citric acid cycle (Kreb’s cycle) via electron transport chain. In the Kreb’s cycle, the pyruvic acid is converted to carbon dioxide. The electron transport chain accepts the electron from the breakdown products of the Kreb’s cycle and glycolysis via the NADH and FADH2. At the end of the chain, the electrons are combined with hydrogen ions and molecular oxygen to form water. This process can produce ATP. During this process, the glucose molecule is broken down and the carbon atoms released from glucose are combined with oxygen to produce carbon dioxide. In anaerobic respiration, pyruvic acid is converted to lactic acid. There is a production of two ATP molecules for each glucose molecule. Fig. 3.a. Courtesy: Enger, Eldon D. et. Al., (2012). Concepts in Biology 14th Edition. USA: McGraw-Hill (Retrieved August 13, 2015) 29 What I Know Chemical reactions for cellular respiration: Which groups in the cellular respiration equation go in? Which groups are released? C6H12O6 + 6 O2 6 CO2 + 6 H2O + energy PRIOR KNOWLEDGE: Definition of Terms 1. Aerobic respiration 2. Anaerobic respiration 3. Pyruvic acid 4. Fermentation 5. Glycolysis 6. Krebs cycle 7. Electron transport chain What’s In In Cellular respiration: • Oxygen is reduced to water • Has electron transport chain located within the cristae of the mitochondria, where ATP is produced by chemiosmosis • Has enzyme-catalyzed reactions within the semi-fluid interior • A carbohydrate is oxidized to carbon dioxide Glycolysis-means “sugar-splitting” that occurs in the cytosol of the cell. It does not require oxygen to breakdown glucose into pyruvate. Krebs cycle-completes the metabolic breakdown of glucose to carbon dioxide and produces 2 ATP. Oxidative phosphorylation-a process occurring in mitochondria and accounts for majority of the ATP production. Electron Transport Chain-contains the chain members (carrier and protein complexes, ATP synthase complex and ATP channel protein. These membrane 30 proteins shuttle electrons during the redox reactions. The electrons will be used to produce ATP by chemiosmosis. NADH and FADH2-these are electron acceptor molecules that contain high-energy electrons. They transport the electrons to ETC to produce many more ATPs by oxidative phosphorylation. ATP synthase-is an enzyme that is responsible for the great production of ATPs. This happens when it uses the energy coming from H+ ions to bind ADP and phosphate group together to produce ATP. Fig. 3.b. The diagram below shows the total energy produced from the complete breakdown of glucose by aerobic respiration. 31 Summary of Cellular Respiration STAGE 1. Glycolysis (in cytosol) 2. Formation of acetyl CoA (in mitochondria) 3. Citric acid cycle (in mitochondria) 4. Electron transport and chemiosmosis (in mitochondria) SOME STARTING MATERIALS SUMMARY Series of reactions in which glucose is degraded to pyruvate; net profit of 2 ATPs; hydrogen atoms are transferred to carriers; can proceed anaerobically Pyruvate is degraded and combined with coenzyme A to form acetyl CoA; hydrogen atoms are transferred to carriers; CO2 is released Series of reactions in which the acetyl portion of acetyl CoA is degraded to CO2; hydrogen atoms are transferred to carriers; ATP is synthesized Chain of several electron transport molecules; electrons are passed along chain; released energy is used to form a proton gradient; ATP is synthesized as protons diffuse down the gradient; oxygen is final electron acceptor 32 Glucose, ATP, NAD+, Pi Pyruvate, coenzyme A, NAD+ Acetyl CoA, H2O, NAD+, FAD, ADP, Pi SOME END PRODUCTS Pyruvate, ATP, NADH Acetyl CoA, CO2, NADH CO2, NADH, FADH2, ATP ATP, H2O, NAD+, FAD NADH, FADH2, O2, ADP, Pi Differences and Similarities of Aerobic, Anaerobic and Fermenting Organisms Similarity Differences Aerobic Organisms Anaerobic Organisms Use oxygen Do not use oxygen H2O is the by-product H2O and potassium nitrite are the by-products Fermenting Organisms Do not use oxygen Lactate (lactate fermentation) or ethyl alcohol (alcoholic fermentation) is the by-product) Final acceptors of electrons are pyruvate reduced to lactate, and acetaldehyde reduced to ethyl alcohol Electron acceptor is O2 and is reduced to water With electron transport chain With electron transport chain Electron acceptor is nitrate or sulfate No electron transport chain Occur in prokaryotes and eukaryotes Occur in prokaryotes Occur in prokaryotes and eukaryotes Requires no special organelles Simple and faster alternative to cellular respiration Requires no special organelles Glycolysis and waste product formation are two sets of reactions that occur 33 Aerobic, Anaerobic and Fermenting Organisms ATP is produced CO2 is the waste product Electrons are transferred from glucose to NADH What’s New Procedure: Refine your knowledge on cellular respiration by doing the sample graphic organizer below. Fill-out the table and distinguish how the two types of respiration are alike and different. Then write your conclusion based on the similarities and differences you have listed. 34 What Is It • Directions: Accomplish the table below by comparing aerobic and anaerobic respiration. Factors Aerobic Respiration Anaerobic Respiration Main function Site of Reaction Production of ATP Sustainability Production of lactic acid Oxygen requirement Recycling of NADH Participating cells Directions: Compare aerobic and anaerobic respiration by accomplishing the Venn diagram below. Venn Diagram of Aerobic and Anaerobic Respiration 35 What’s More Directions: Compare fermentation with anaerobic and aerobic respiration by analyzing the diagram below. 1. What are the three kinds of enzyme-controlled reactions so that the chemical-bond energy from a certain nutrient is released to the cell in the form of ATP? 2. What are the hydrogen electron acceptors for aerobic and anaerobic respiration as well as in fermentation? 3. These are the by-products of aerobic respiration that are considered low-energy molecules. 4. What are the outputs produced by anaerobic respiration? What about in fermentation? 5. What are two general metabolic mechanisms by which certain cells can oxidize organic fuel and generate ATP without the use of oxygen? Directions: Fill-in the table below for the major events and features of cellular respiration. The option table is given for you to answer the needed materials and end products of cellular respiration. 36 Major Events and Features of Cellular Respiration STAGE STARTING MATERIALS END PRODUCTS 1. Glycolysis (in cytosol) 2. Preparatory reaction 3. Citric acid cycle 4. Electron transport and chemiosmosis Available Choices a. Pyruvate, ATP, NADH b. NADH, FADH2, O2, ADP Pi c. Glucose, ATP, NAD+, ADP Pi e. Acetyl CoA, H2O, NAD+, FAD, ADP Pi f. Acetyl CoA, CO2, NADH g. CO2, NADH, FADH2, ATP 37 d. Pyruvate, Coenzyme A, NAD+ h. ATP, H2O, NAD+, FAD What I Have Learned • A. Learning Process Activity: Directions: This is a modified TRUE or FALSE activity. Write the word TRUE if the underlined word/phrase being referred to is correct. If it is FALSE, change the word/phrase to make the whole statement correct based on the concept of cellular respiration. Write your answer on a separate sheet of paper. _____1. Fermentation and anaerobic respiration enable the cells to produce ATP without the use of oxygen. _____2. The term cellular respiration includes both aerobic and anaerobic processes. _____3. Fermentation is a complete degradation of sugars or other fuel that occurs without the use of oxygen. _____4. An electron transport system consists of a number of molecules, majority are proteins, located in the matrix of the mitochondria of eukaryotic cells and the plasma membrane of aerobic prokaryotes. _____5. Pyruvate oxidation and the citric acid cycle, oxidative phosphorylation: electron transport chain and chemiosmosis are the metabolic stages reserved for cellular respiration. _____6. The breakdown of glucose to carbon dioxide is completed in the electron transport chain. _____7. ATP synthase is the enzyme that makes the bulk of the ATP from ADP and Pi by chemiosmosis. _____8. ATP synthase uses the energy of an existing hydrogen ion gradient to power ATP synthesis. _____9. Phosphorylation of ADP to form ATP stores at least 14.6 kcal per molecule of ATP. _____10. Citric acid cycle generates 2 ATP whether oxygen is present or not, whether the conditions are aerobic or anaerobic. 38 • B. Learning Process Activity: Directions: Arrange the following to get the right energy flow sequence in aerobic respiration. NADH • Electron Transport Chain Glucose ATP C. Learning Process Activity: Directions: Identify the following statements as photosynthesis or cellular respiration. ____________1. Energy-releasing pathways ____________2. Energy-acquiring pathways What I Can Do Performance Task: Homemade Virgin Coconut Oil and Fermentation/Modified Natural Vinegar Fermentation Method. A video link is provided: https://www.youtube.com/watch?v=xGK8z3DXw7E https://www.youtube.com/watch?v=EUu7SF25tXM https://www.youtube.com/watch?v=Jh0wWMdNkv4 https://www.youtube.com/watch?v=3-wE7pbXaXY This can be done at home with precautionary measures. Document your output and submit it via YouTube or Facebook. Just click the video link on how to make the homemade virgin coconut oil and natural vinegar fermentation method. Choose only one for your performance task. 39 Key Concepts: Fermentation refers to the addition of yeast or a specific microorganisms or enzyme to a raw material to produce a desired product. But for the so-called natural fermentation method, we will produce VCO that does not require any addition of microorganisms or substance. When the coconut milk mixture is allowed to stand for at least 10 hours, the VCO will naturally separate from water and protein. Several theories say that the separation of these substances is due to the presence of airborne acetic acid bacteria (Acetobacter aceti). A. aceti breaks the protein bonds in the coconut milk causing the mixture to separate distinctively. Another theory says that the enzyme present in the coconut makes the separation of substances to occur. The so-called ‘fermentation method’ happens when after 16 to 24 hours of settling, the water smells and tastes sour. The so-called ‘natural’ explains that there is no addition of any other substance or microorganism in fermenting the virgin coconut oil. Also the ‘virgin’ in the virgin coconut oil implies that there is no substance added to make the oil. On the other hand, vinegar is a sour-tasting condiment and preservative. It can be prepared by two successive microbial processes. The first phase is done through alcoholic fermentation by a eukaryotic organism called yeast. The second phase is by oxidation of alcohol by a prokaryotic organism called Acetobacter aceti. This bacterium is responsible for converting the alcohol in wine to acetic acid or vinegar. Since coconut is abundant in our country, use this example to show the principle of fermentation process involving microorganisms and the series of reactions that take place as coconut water is converted into vinegar. Post-Assessment MULTIPLE CHOICE: Directions: Read and understand each item and choose the letter of the correct answer. Write your answers on a separate sheet of paper. __1. Majority of the CO2 is released during A. Glycolysis B. Citric acid cycle C. Electron transport chain D. Oxidative phosphorylation __2. Cellular respiration processes that do not use O2 are called E. Heterotrophic organism F. Anaerobic organism G. Aerobic organism H. Anabolic __3. The positively charged hydrogen ions that are released from the glucose during cellular respiration eventually combine with _________ ion to form _____________. E. another hydrogen, a gas 40 F. a carbon, carbon dioxide G. an oxygen, water H. a pyruvic acid, lactic acid __4. The Krebs cycle (also known as citric acid cycle or tricarboxylic acid) and ETC are biochemical pathways performed in which eukaryotic organelle? E. Nucleus F. Ribosome G. Chloroplast H. Mitochondrion __5. Anaerobic pathways that oxidize glucose to generate ATP energy by using an organic molecule as the ultimate hydrogen acceptor are called E. Fermentation F. Reduction G. Krebs cycle H. Electron pumps __6. When skeletal muscle cells function anaerobically, they accumulate the compound ________, which causes muscle soreness. B. Pyruvic acid B. Malic acid C. Carbon dioxide D. Lactic acid __7. Each molecule of fat can release _______ of ATP, compared with a molecule of glucose. E. smaller amounts F. the same amount G. larger amount H. only twice the amount __8. In complete accounting of all ATPs produced in aerobic respiration, a total of ____ATPs: _____from the ETC, _____from glycolysis, and _____ from the Krebs cycle. A. 36, 32, 2, 2 B. 38, 34, 2, 2 C. 36, 30, 2, 4 D. 38, 30, 4, 4 __9. The chemical activities that remove electrons from glucose result in the glucose being A. reduced B. oxidized C. phosphorylated D. hydrolyzed __10. Which of the following is NOT true of the citric acid cycle? The citric acid cycle A. includes the preparatory reaction B. produces ATP by substrate-level ATP synthesis C. occurs in the mitochondria D. is a metabolic pathway, as is glycolysis 41 42 Lesson 1 ATP-ADP Cycle What I Know 1b 2a 3d 4c 5b What Is It (Suggested Answers) 1. Kinetic, Thermal, Light, Potential, Chemical 2. Thermodynamics 1st Law: The energy of the universe is constant 2nd Law: Every energy transfers or transformation increases the energy of the universe. 3. The hydrolysis of ATP can be coupled to energy requiring reactions within cells. The inorganic phosphate released during the hydrolysis of ATP can be used to phosphorylate other compounds. Lesson 2 Photosynthesis What I Know 1 Carbon dioxide & water 2 Carbohydrates (glucose) & molecular oxygen What’s More (Suggested Answers) a Light-energy; pigment (chlorophyll) a Electrons b Electrons, NADP+, H2O, electron acceptors b NADPH, O2 c Proton gradient, ADP+ P, ATP synthase c ATP 2 Ribulose bisphosphate, CO2, ATP, NADPH, Necessary enzymes 2 Carbohydrates, ADP+ P, NADP+ What I Have Learned 1T 2F 3T 4F 5T Lesson 3 Cellular Respiration What I Know 1 Carbohydrates (glucose) & molecular oxygen 2 Carbon dioxide & water What’s New Comparing Graphic Organizer How alike? Both undergo glycolysis in the cytoplasm of the cell Both undergo substrate-level phosphorylation and oxidative phosphorylation and chemiosmosis in producing ATP molecules Both split the 6-carbon glucose into two molecules of pyruvate, the three-carbon molecule Both involve a series of enzyme-controlled reactions that take place in the cytoplasm Both use NAD+ (nicotinamide adenine dinucleotide), a redox coenzyme that accepts two electrons plus a hydrogen (H+) that becomes NADH Both performed by eukaryotic and prokaryotic cells How Different? Aerobic Respiration Maximum yield of 36 to 38 ATP molecules per glucose Complete breakdown of glucose to carbon dioxide and water with the use of oxygen Multiple metabolic pathways Pyruvate proceeds to acetyl formation in the mitochondrion The presence of enough oxygen in the cell makes the cell perform its job smoothly without burning sensation More efficient in harvesting energy from glucose with estimated 39% energy efficiency (36-38 ATP) in eukaryotic organisms but much higher ATP production (38 to 40 ATP) in prokaryotic organisms Outputs are carbon dioxide, water and ATP Products produce are for biochemical cycling and for the cellular processes that require energy Slow glucose breakdown Electrons in NADH are transferred to electron transport chain Mechanism of ATP synthesis is by substratelevel and oxidative ANSWER KEY O2 is the final electron acceptor of the electron transport system Brain cells in the human body can only live aerobically. They die if molecular oxygen is absent. Anaerobic Respiration Maximum yield of 2 ATP molecules per glucose for obligate anaerobes Partial degradation of glucose without the use of oxygen (obligate anaerobes) Single metabolic pathway (in fermentation) Pyruvate is broken down to ethanol and carbon dioxide or lactate (in fermentation) Cause burning sensation in the muscle during strenuous exercise (in fermentation) Less efficient in harvesting energy from glucose with 2% energy efficiency (for obligate anaerobes) Outputs are lactate, alcohol and carbon dioxide (in fermentation); but reduced inorganic compound in anaerobic respiration Produce numerous products with economic and industrial importance through fermentation Rapid breakdown of glucose Electrons in NADH are transferred to electron transport chain; but in fermentation electrons in NADH are transferred to organic molecule Mechanism of ATP synthesis is by substratelevel and oxidative phosphorylation/chemiosmosis; but in fermentation substrate-level phosphorylation only during glycolysis In anaerobic respiration, inorganic substances like NO3 - or SO4 2- are the final acceptor of the electron transport system; but in fermentation, there is no electron acceptor because it has no electron transport system Some organisms like yeasts (eukaryotic), many bacteria (prokaryotic) and the human muscle cells (eukaryotic) can make enough ATP to survive in facultative anaerobes (can live in the absence or presence of oxygen). But under anaerobic conditions lactic acid fermentation occurs. A facultative anaerobe needs to consume the nutrient at a much faster rate when doing the fermentation or anaerobic process 43 Summary and Conclusion Aerobic respiration requires molecular oxygen to happen in the cells of most eukaryotes and prokaryotes. Here, nutrients are split into a series of enzyme-controlled reactions producing an estimated 36 to 38 ATP per glucose complete breakdown. Molecular oxygen is the final acceptor of the low-energy level electron at the end of the electron transport system that results in the production of water. In anaerobic respiration on the other hand does not require oxygen in splitting nutrients. Some prokaryotes that live in oxygen-free environments such as water logged soil, in ponds where water does not flow, and in the intestines of animals transfer glucose to NADH and then pass the electrons down the electron transport chain that is joined to ATP synthesis by chemiosmosis. Nitrate and sulfate are the final acceptors of electrons. The end products are carbon dioxide, reduced inorganic substances and ATP. In fermentation (as type of anaerobic respiration) there is no electron acceptor because it has no electron transport chain. Its products are either alcohol (and carbon dioxide) or lactate. What Is It Comparing Aerobic & Anaerobic Respiration Aerobic Respiration Main function: Production of ATP from food such as carbohydrate, lipid and protein Site of Reaction: Cytoplasm and mitochondrion Production of ATP: 36 to 38 ATP per glucose molecule Sustainability: Long-term Production of lactic acid: Does not produce Oxygen requirement: Yes Recycling of NADH: Through the electron transport system Participating cells: Most cells Anaerobic Respiration Main function: Production of ATP without the use of oxygen Site of Reaction: Cytoplasm Production of ATP: 2 ATP per glucose molecule Sustainability: Short-term Production of lactic acid: Produces Oxygen requirement: No Recycling of NADH: In lactic acid fermentation Participating cells: Yeast, other fungi, prokaryotes, muscle cells. ANSWER KEY 44 What Is It Venn Diagram (See Aerobic & Anaerobic Respiration Comparison) What’s More Compare fermentation with anaerobic and aerobic respiration by analyzing the diagram Suggested Answers: 1. Aerobic respiration, anaerobic respiration, and fermentation 2. aerobic respiration — molecular oxygen, anaerobic respiration — nitrate or sulfate, fermentation – pyruvate 3. Water and carbon dioxide 4. Anaerobic respiration—ATP, water reduced acceptor (nitrate or sulfate), fermentation, ATP, carbon dioxide, alcohol or lactate 5. Anaerobic respiration and fermentation Major Events and Features of Cellular Respiration 1 Glucose, ATP, NAD+, ADP Pi Pyruvate, ATP, NADH 2 Pyruvate, Coenzyme A, NAD+ Acetyl CoA, CO2, NADH Pre & PostAssessment 3 Acetyl CoA, H2O, NAD+, FAD, ADP Pi CO2, NADH, FADH2, ATP 1b 2b 3c 4d 5a 6d 7c 8a 9b 10a 4 NADH, FADH2, O2, ADP, Pi ATP, H2O, NAD+, FAD What I Have Learned A. 1 True 2 True 3 Partial or Incomplete 4 Cristae or Folds 5 True 6 Krebs Cycle 7 True 8 True 9 7.3 kcal 10 Glycolysis B. 1 Glucose 2 NADH 3 Electron Transport Chain 4 ATP C. 1 Cellular Respiration 2 Photosynthesis ANSWER KEY References GENERAL BIOLOGY 1 SPECIALIZED SUBJECT | ACADEMIC-STEM, The Commission on Higher Education, Philippine Normal University (2016) https://bit.ly/2DCe9kz (Restrictions are imposed) DEPED Learning Modules Grade 7-10 General Biology 1, Authors: Maria Angelica D. Rea, Mary Zugar M. Dequillo, Jenny Lyn C. Chua For inquiries or feedback, please write or call: Department of Education – Division of Cagayan de Oro City Office Address: Fr. William F. Masterson Ave Upper Balulang Cagayan de Oro Telephone Nos.: (08822)855-0048 E-mail Address: cagayandeoro.city@deped.gov.ph 45