Chapter 12 Molecular Genetics Section 1: DNA: The Genetic Material Section 2: Replication of DNA Section 3: DNA, RNA, and Protein Section 4: Gene Regulation and Mutation http://student.ccbcmd.edu/~gkaiser/biotutorials/index.html http://glencoe.mcgraw-hill.com/sites/0078757134/student_view0/ http://library.thinkquest.org/C0118084/Genetic_Engineering.htm Click on a lesson name to select. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material Griffith Performed the first major experiment that led to the discovery of DNA as the genetic material DNA is the genetic material – The First demonstration of bacterial transformation. – Experiments done by Frederick Griffith (in London) in 1928 found there were two different types of the bacterium Streptococcus pneumoniae: • An "S" or SMOOTH coat strain, which is lethal to mice. • An "R" or ROUGH strain, which will not hurt the mouse. – Griffith found that he could heat inactivate the smooth strain. Fredrick Griffith • However, if he were to take a mixture of the heat-inactivated S strain, mixed with the R strain, the mouse would die. • Thus there was some material in the heat-killed S strain that was responsible for "transforming" the R strain into a lethal form. • Fred Griffith (and a lab co-worker) was killed in their laboratory in 1940 from a German bomb. Griffith’s work continued in U.S. • in 1944, Oswald Avery, C.M. MacLeod, and M. McCarty carefully demonstrated that the ONLY material that was responsible for the transformation was DNA • Thus, DNA was the "Genetic material" however, many scientists were still not sure that it was REALLY DNA (and not proteins) that was the genetic material. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material Oswald Avery Identified the molecule that transformed the R strain of bacteria into the S strain Concluded that when the S cells were killed, DNA was released R bacteria incorporated this DNA into their cells and changed into S cells. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material Hershey and Chase (1952) Used radioactive labeling to trace the DNA (P) and protein (S) Concluded that the viral DNA was injected into the cell and provided the genetic information needed to produce new viruses Chapter 12 Molecular Genetics Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material DNA Structure Nucleotides Consist of a five-carbon sugar, a phosphate group, and a nitrogenous base Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material Chargaff’s rule: C = G and T = A Pyrimidines = Cytosine and Thymine Purines = Guanine and Adenine In 1950, Erwin Chargaff analyzed the base composition of DNA composition in a number of organisms. He reported that DNA composition varies from one species to another. Such evidence of molecular diversity, which had been presumed absent from DNA, made DNA a more credible candidate for the genetic material than protein. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material X-ray Diffraction Structure Analysis (1951-1952) X-ray diffraction data helped solve the structure of DNA Indicated that DNA was a double helix This is the famous Rosalind Franklin - Picture 51 which was leaked to James Watson and Francis Crick by Maurice Wilkins. Sodium deoxyribose nucleate from calf thymus, Structure B, Photo 51, taken by Rosalind E. Franklin and R.G. Gosling (her student). Linus Pauling's holographic annotations are to the right of the photo. May 2, 1952 Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material X-ray Diffraction Rosalind Franklin (1920 - 1958) The technique with which Maurice Wilkins and Franklin set out to do this is called X-ray crystallography. With this technique a crystal is exposed to x-rays in order to produce a diffraction pattern. If the crystal is pure enough and the diffraction pattern is acquired very carefully, it is possible to reconstruct the positions of the atoms in the molecules that comprise the basic unit of the crystal. Rosalind Franklin died from cancer in April of 1958, at the age of 37. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material Watson and Crick 1953 Built a model of the double helix that conformed to the others’ research 1. two outside strands consist of alternating deoxyribose and phosphate 2. cytosine and guanine bases pair to each other by three hydrogen bonds 3. thymine and adenine bases pair to each other by two hydrogen bonds Nobel Prize in Medicine/Physiology • The rules of the Nobel Prize forbid posthumous nominations; because Rosalind Franklin had died in 1958 she was not eligible for nomination to the Nobel Prize subsequently awarded to Crick, Watson, and Wilkins in 1962. • The award was for their body of work on nucleic acids and not exclusively for the discovery of the structure of DNA. • By the time of the award Wilkins had been working on the structure of DNA for over 10 years, and had done much to confirm the Crick-Watson model. Crick had been working on the genetic code at Cambridge and Watson had worked on RNA for some years. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material DNA Structure – Double Helix DNA often is compared to a twisted ladder. Rails of the ladder are represented by the alternating deoxyribose and phosphate. The pairs of bases (cytosine–guanine or thymine–adenine) form the steps. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material Orientation On the top rail, the strand is said to be oriented 5′ to 3′. The strand on the bottom runs in the opposite direction and is oriented 3′ to 5′. Chapter 12 Molecular Genetics 12.1 DNA: The Genetic Material Chromosome Structure DNA coils around histones to form nucleosomes, which coil to form chromatin fibers. The chromatin fibers supercoil to form chromosomes that are visible in the metaphase stage of mitosis. Chapter 12 Molecular Genetics 12.2 Replication of DNA Semiconservative Replication Parental strands of DNA separate, serve as templates, and produce DNA molecules that have one strand of parental DNA and one strand of new DNA. Chapter 12 Molecular Genetics 12.2 Replication of DNA Unwinding DNA helicase, an enzyme, is responsible for unwinding and unzipping the double helix. RNA primase adds a short segment of RNA, called an RNA primer, on each DNA strand. Keeping the DNA strands separate. Chapter 12 Molecular Genetics 12.2 Replication of DNA Base pairing DNA polymerase (an enzyme) continues adding appropriate nucleotides to the chain by adding to the 3′ end of the new DNA strand. Chapter 12 Molecular Genetics Chapter 12 Molecular Genetics 12.2 Replication of DNA One strand is called the leading strand and is elongated as the DNA unwinds so is said to be synthesized continuously. The other strand of DNA, called the lagging strand, elongates away from the replication fork. The lagging strand is synthesized discontinuously into small segments, called Okazaki fragments. Chapter 12 Molecular Genetics 12.2 Replication of DNA Joining DNA polymerase removes the RNA primer and fills in the place with DNA nucleotides. DNA ligase links the two sections. Chapter 12 Molecular Genetics 12.2 Replication of DNA Comparing DNA Replication in Eukaryotes and Prokaryotes Eukaryotic DNA unwinds in multiple areas as DNA is replicated. In prokaryotes, the circular DNA strand is opened at one origin of replication. Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein Central Dogma: DNA to RNA to Protein RNA Contains the sugar ribose (instead of deoxyribose) and the base uracil (instead of thymine) Usually is single stranded Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein Messenger RNA (mRNA) Long strands of RNA nucleotides that are formed complementary to one strand of DNA Ribosomal RNA (rRNA) Associates with proteins to form ribosomes in the cytoplasm Transfer RNA (tRNA) Smaller segments of RNA nucleotides that transport amino acids to the ribosome where proteins are made by adding 1 a.a. at a time Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein Chapter 12 Molecular Genetics Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein Transcription Through transcription, the DNA code is transferred to mRNA in the nucleus. DNA is unzipped in the nucleus and RNA polymerase binds to a specific section where an mRNA will be synthesized. Chapter 12 Molecular Genetics Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein RNA Processing The code on the DNA is interrupted periodically by sequences that are not in the final mRNA – introns removed.. Intervening sequences are called introns. Remaining pieces of DNA that serve as the coding sequences are called exons. DNA and Genes Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein The Code Experiments during the 1960s demonstrated that the DNA code was a three-base code. The three-base code in DNA or mRNA is called a codon. Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein Translation In translation, tRNA molecules act as the interpreters of the mRNA codon sequence. At the middle of the folded strand, there is a three-base coding sequence called the anticodon. Each anticodon is complementary to a codon on the mRNA. Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein Visualizing Transcription and Translation Chapter 12 Molecular Genetics 12.3 DNA, RNA, and Protein One Gene— One Enzyme The Beadle and Tatum experiment showed that one gene codes for one enzyme. We now know that one gene codes for one polypeptide. DNA from the Beginning Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Prokaryote Gene Regulation Ability of an organism to control which genes are transcribed in response to the environment An operon is a section of DNA that contains the genes for the proteins needed for a specific metabolic pathway. Operator Promoter Regulatory gene Genes coding for proteins Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation The Trp Operon Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation The Lac Operon Lac-Trp Operon Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Eukaryote Gene Regulation Controlling transcription Transcription factors ensure that a gene is used at the right time and that proteins are made in the right amounts The complex structure of eukaryotic DNA also regulates transcription. Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Hox Genes Hox genes are responsible for the general body pattern of most animals. Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation RNA Interference RNA interference can stop the mRNA from translating its message. Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Mutations A permanent change that occurs in a cell’s DNA is called a mutation. Types of mutations Point mutation Insertion Deletion Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Protein Folding and Stability Substitutions also can lead to genetic disorders. Can change both the folding and stability of the protein Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Causes of Mutation Can occur spontaneously Chemicals and radiation also can damage DNA. High-energy forms of radiation, such as X rays and gamma rays, are highly mutagenic. Chapter 12 Molecular Genetics 12.4 Gene Regulation and Mutation Body-cell v. Sex-cell Mutation Somatic cell mutations are not passed on to the next generation. Mutations that occur in sex cells are passed on to the organism’s offspring and will be present in every cell of the offspring. Chapter 12 Molecular Genetics Chapter Resource Menu Chapter Diagnostic Questions Formative Test Questions Chapter Assessment Questions Standardized Test Practice biologygmh.com Glencoe Biology Transparencies Image Bank Vocabulary Animation Click on a hyperlink to view the corresponding lesson. Chapter 12 Molecular Genetics Chapter Diagnostic Questions Which scientist(s) definitively proved that DNA transfers genetic material? A. Watson and Crick B. Mendel C. Hershey and Chase D. Avery Chapter 12 Molecular Genetics Chapter Diagnostic Questions Name the small segments of the lagging DNA strand. A. ligase B. Okazaki fragments C. polymerase D. helicase Chapter 12 Molecular Genetics Chapter Diagnostic Questions Which is not true of RNA? A. It contains the sugar deoxyribose. B. It contains the base uracil. C. It is single-stranded. D. It contains a phosphate. Chapter 12 Molecular Genetics 12.1 Formative Questions The experiments of Avery, Hershey and Chase provided evidence that the carrier of genetic information is _______. A. carbohydrate B. DNA C. lipid D. protein Chapter 12 Molecular Genetics 12.1 Formative Questions What is the base-pairing rule for purines and pyrimidines in the DNA molecule? A. A—G and C—T B. A—T and C—G C. C—A and G—T D. C—U and A—G Chapter 12 Molecular Genetics 12.1 Formative Questions What are chromosomes composed of? A.chromatin and histones B. DNA and protein C. DNA and lipids D. protein and centromeres Chapter 12 Molecular Genetics 12.2 Formative Questions True or False The work of Watson and Crick solved the mystery of how DNA works as a genetic code. Chapter 12 Molecular Genetics 12.2 Formative Questions Which is not an enzyme involved in DNA replication? A. DNA ligase B. DNA polymerase C. Helicase D. RNA primer Chapter 12 Molecular Genetics 12.2 Formative Questions During DNA replication, what nucleotide base sequence is synthesized along an original strand that has the sequence TCAAGC? A. AGTTCG B. ATGGCG C. CTGGAT D. GACCTA Chapter 12 Molecular Genetics 12.3 Formative Questions Which shows the basic chain of events in all organisms for reading and expressing genes? A. DNA RNA protein B. RNA DNA protein C. mRNA rRNA tRNA D. RNA processing transcription translation Chapter 12 Molecular Genetics 12.3 Formative Questions In the RNA molecule, uracil replaces _______. A. adenine B. cytosine C. purine D. thymine Chapter 12 Molecular Genetics 12.3 Formative Questions Which diagram shows messenger RNA (mRNA)? A. C. B. D. Chapter 12 Molecular Genetics 12.3 Formative Questions What characteristic of the mRNA molecule do scientists not yet understand? Chapter 12 Molecular Genetics 12.3 Formative Questions A. intervening sequences in the mRNA molecule called introns B. the original mRNA made in the nucleus called the pre-mRNA C. how the sequence of bases in the mRNA molecule codes for amino acids D. the function of many adenine nucleotides at the 5′ end called the poly-A tail Chapter 12 Molecular Genetics 12.4 Formative Questions Why do eukaryotic cells need a complex control system to regulate the expression of genes? Chapter 12 Molecular Genetics 12.4 Formative Questions A. All of an organism’s cells transcribe the same genes. B. Expression of incorrect genes can lead to mutations. C. Certain genes are expressed more frequently than others are. D. Different genes are expressed at different times in an organism’s lifetime. Chapter 12 Molecular Genetics 12.4 Formative Questions Which type of gene causes cells to become specialized in structure in function? A. exon B. Hox gene C. intron D. operon Chapter 12 Molecular Genetics 12.4 Formative Questions What is an immediate result of a mutation in a gene? A. cancer B. genetic disorder C. nonfunctional enzyme D. amino acid deficiency Chapter 12 Molecular Genetics 12.4 Formative Questions Which is the most highly mutagenic? A. chemicals in food B. cigarette smoke C. ultraviolet radiation D. X rays Chapter 12 Molecular Genetics Chapter Assessment Questions Look at the following figure. Identify the proteins that DNA first coils around. Chapter 12 Molecular Genetics Chapter Assessment Questions A. chromatin fibers B. chromosomes C. histones D. nucleosome Chapter 12 Molecular Genetics Chapter Assessment Questions Explain how Hox genes affect an organism. A. They determine size. B. They determine body plan. C. They determine sex. D. They determine number of body segments. Chapter 12 Molecular Genetics Chapter Assessment Questions Explain the difference between body-cell and sex-cell mutation. Chapter 12 Molecular Genetics Chapter Assessment Questions Answer: A mutagen in a body cell becomes part of the genetic sequence in that cell and in future daughter cells. The cell may die or simply not perform its normal function. These mutations are not passed on to the next generation. When mutations occur in sex cells, they will be present in every cell of the offspring. Chapter 12 Molecular Genetics Standardized Test Practice What does this diagram show about the replication of DNA in eukaryotic cells? Chapter 12 Molecular Genetics Standardized Test Practice A. DNA is replicated only at certain places along the chromosome. B. DNA replication is both semicontinuous and conservative. C. Multiple areas of replication occur along the chromosome at the same time. D. The leading DNA strand is synthesized discontinuously. Chapter 12 Molecular Genetics Standardized Test Practice What is this process called? Chapter 12 Molecular Genetics Standardized Test Practice A. mRNA processing B. protein synthesis C. transcription D. translation Chapter 12 Molecular Genetics Standardized Test Practice What type of mutation results in this change in the DNA sequence? TTCAGG A. deletion B. frameshift C. insertion D. substitution TTCTGG Chapter 12 Molecular Genetics Standardized Test Practice How could RNA interference be used to treat diseases such as cancer and diabetes? Chapter 12 Molecular Genetics Standardized Test Practice A. by activating genes to produce proteins that can overcome the disease B. by interfering with DNA replication in cells affected by the disease C. by preventing the translation of mRNA into the genes associated with the disease D. by shutting down protein synthesis in the cells of diseased tissues Chapter 12 Molecular Genetics Standardized Test Practice True or False The structure of a protein can be altered dramatically by the exchange of a single amino acid for another. Chapter 12 Molecular Genetics Glencoe Biology Transparencies Chapter 12 Molecular Genetics Image Bank Chapter 12 Molecular Genetics Image Bank Chapter 12 Molecular Genetics Vocabulary Section 1 double helix nucleosome Chapter 12 Molecular Genetics Vocabulary Section 2 semiconservative replication DNA polymerase Okazaki fragment Chapter 12 Molecular Genetics Vocabulary Section 3 RNA intron messenger RNA exon ribosomal RNA translation transfer RNA transcription RNA polymerase codon Chapter 12 Molecular Genetics Vocabulary Section 4 gene regulation operon mutation mutagen Chapter 12 Molecular Genetics Animation DNA Polymerase Transcription Visualizing Transcription and Translation Lac-Trp Operon