Motor Proteins - Introduction Part 1 Biochemistry 4000 Dr. Ute Kothe

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Motor Proteins

- Introduction Part 1

Biochemistry 4000

Dr. Ute Kothe

Motor Proteins

Motor Proteins convert chemical energy into motion.

• chemical energy is derived from ATP hydrolysis

• motion is generated by conformational changes depending on the bound nucleotide

Myosin Kinesin Dynein

Motor Protein Function

Myosin (18 known classes, 40 different myosins in humans)

Movement along actin fibres

• Muscle movement

• Cytokinesis (cytoplasmic division, tightening of contractile ring)

• Transport of cargo along microfilaments (vescicles etc.)

Kinesin (16 classes)

Movement along microtubule tracks , usually to (+) end

• Transport of cargos: vesicles, organelles, cytosolic components such as mRNAs & proteins, chromosomes

Dynein (12 mammalian dyneins)

Movement along microtubule tracks , to (-) end, i.e. cell center

• Cytoplasmic dyneins: transport of cargos such as vesicles

• Axonemal dyneins: Movement of cilia and flagella

Tubulin

• building block of microtubules

• heterodimer of closely related Tubulin a

& b

• G proteins : N-terminal residues fold into

G domain-like structure

• a

tubulin’s GTP buried at subunit interface, nonexchangable, not hydrolyzed

• b

tubulin’s GTP is solvent exposed until tubulin dimers polymerize

• upon polymerization, a

-tubulin from adjacent dimer provides catalytic residue to hydrolyze btubulin’s GTP; resulting

GDP is nonexchangeable unless tubulin dissociates from microtubule

Tubulin b

+ GDP

Tubulin a

+ GTP

Voet Fig. 35-89

Microtubules

1. Tubulins interact head to tail to form a long protofilament

2. Protofilaments align side by side in curved sheet

3. Sheet of 13 (9-16) protomers closes on itself to form microtubule

4. Microtubule lengthens by addition of tubulins to both ends

(preferentially to + end , i.e. the end terminating in b

-tubulins)

Voet Fig. 35-92

Structure of the Axoneme

• Bundle of microtubules called axoneme

• coated by plasma membrane

• Forms eukaroytic flagella & cilia

Voet Fig. 35-102

Dynein

• 1 or more heavy chains (motor domain)

• several intermediate and light chains

• motor domain is 7-membered ring, ATPhydrolyzing unit

• coiled-coil extension forms stalk that interacts via globular domain with microtubules

• long stem (with intermediate and light chains) binds cargo

Valle, Cell 2003; Voet Fig. 35-107

Conventional Kinesin

• two identical heavy chains forming two large globular heads attaching to microtubules and a coiled-coil

• two identical light chains interacting wit cargo

• transports vesicles and organelles in (-) to (+) direction (towards cell periphery)

Voet Fig. 35-94

Kinesin Structure

• Globular head : tubulin-binding site & nucleotide binding site

• flexible neck linker

• a

-helical stalk leading into coiled-coil

• ATP hydrolysis triggers conformational change in neck linker via 2 switch regions :

• When ATP is bound, neck linker docks with catalytic core

• Upon ATP hydrolysis, the neck linker

“unzips”

Voet Fig. 35-95 & 96 & 97

Kinesin Cycle

Voet Fig. 35-98

Hand-over-Hand Mechanism

ATP-bound state: strong microtuble binding

ADP-bound state: weak microtubule binding

1.

ATP binds to leading head - globular kinesin head which is already bound to the microtubule and oriented towards (+) end

2.

Neck linker of leading head “zips up” agains catalytic core

3.

trailing head is thrown forward (trailing head has bound ADP and reduced affinity to microtubule):

4.

Trailing head swings by ~ 160 Å, net movement of dimeric kinesin is ~ 80 Å = length of one microtubule dimer

5.

ATP in new trailing head is hydrolyzed & phosphate released: affinity for microtuble decreases

6.

ADP in new leading head dissociates

Two heads work in a coordinated fashion

ATP binding to leading head induces power stroke

Processivity

Kinesin is highly processive: it takes several 100 steps on a microtubule without detaching or sliding backwards!

How?

• coordinated, but out of phase ATP cycle in both heads

• one head is always firmly attached to microtubule

Movie demonstrating kinesins processivity: http://www.proweb.org/kinesin/axonemeMTs.html

Dynein

• 1 or more heavy chains (motor domain)

• several intermediate and light chains

• motor domain is 7-membered ring, ATPhydrolyzing unit

• coiled-coil extension forms stalk that interacts via globular domain with microtubules

• long stem (with intermediate and light chains) binds cargo

Valle, Cell 2003; Voet Fig. 35-107

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