Opening doors to new worlds in Laser Scanning Microscopy Welcome! Workshop University of Pennsylvania March 21th 2002 Introduction to technique and applications of The multi-fluorescence imaging technology for Laser Scanning Microscopy Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 1 Opening doors to new worlds in Laser Scanning Microscopy Content Status Quo Open issues The new detection method Features and benefits Application examples A new way for FRET experiments Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 2 Opening doors to new worlds in Laser Scanning Microscopy Focus on Life Sciencev Developmental Biology Neurobiology Genetics Molecules, organelles, cells, tissue, embryos as functional units Physiology Cell Biology Goal: - Non destructive observation of specimen - Qualitative and quantitative analysis (2D, 3D, 4D, ...) - Examine structure and function! - Trends: fluorescence quantification .. FRAP .. FRET .. Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 3 Opening doors to new worlds in Laser Scanning Microscopy Confocal Microscopy - Principle Pinhole Confocal Sample Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 4 Opening doors to new worlds in Laser Scanning Microscopy Brightfield versus Confocal non confocal Advanced Imaging Microscopy / Sebastian Tille confocal www.zeiss.com/lsm 5 Opening doors to new worlds in Laser Scanning Microscopy We’ve come a long way…and keep on going! Demands, demands, demands: - - High resolution - Spatial - x, y, z - Temporal – Time lapse - Spectral – Multi color Authentic data - Convenience - Flexibility It’s a mammoth. 3D imaging, first successful try (whole mount): Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 6 Opening doors to new worlds in Laser Scanning Microscopy Zeiss solutions before META Proven functionality for (almost) any application: LSM 510 <> LSM 5 PASCAL <> ConfoCor 2 <> LSM 510/ConfoCor 2 Combi Flexible scanning strategies (DSP concept) Multitracking Fiber Input Real ROIs Multiple Pinholes Spline Scan Time Series Physiology Autofocus Reuse-Concept 12 bit ADC Image Database UV Image VisArt .... Motorized Collimators LSM 510 NLO (2photon) Fluorescence Correlation Spectroscopy Topography ... Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 7 Opening doors to new worlds in Laser Scanning Microscopy The fluorescence emission from the sample is separated by dichroic beamsplitters and/or by filters (longpass, bandpass) Long wavelength Conventional Emission Separation Short wavelength Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 8 Opening doors to new worlds in Laser Scanning Microscopy Crosstalk distorts co-localization FITC / Rhod Simultaneous Simultaneous FITC Rhod merged bovine endothelial cells Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 9 Opening doors to new worlds in Laser Scanning Microscopy No Crosstalk with Multitracking FITC / Rhod Sequential • Fast line-wise switching of laser lines and • Multitracking • • FITC Advanced Imaging Microscopy / Sebastian Tille Rhod intensities Fast switching between tracks in line or frame mode Scanning quasi-simultaneously (in dual directional scan) Better signal with longpass filters (compared merged to bandpass) www.zeiss.com/lsm 10 Opening doors to new worlds in Laser Scanning Microscopy Multifluorescence Imaging The Problem Spectral properties of the available dyes limit the experimental freedom. Often it is even difficult to clearly separate two fluorescence markers. With more markers, the problem grows increasingly complex. (spectra published by Clonetech) Cross-talk between the FP variants at the excitation and emisson level Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 11 Opening doors to new worlds in Laser Scanning Microscopy Content Status Quo Open issues The new detection method Features and benefits Application examples A new way for FRET experiments Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 12 Opening doors to new worlds in Laser Scanning Microscopy Acknowledgements It has been a very fruitful collaboration with the people at Caltech, who tried multi-spectral imaging first with a prototyp using an LCTF setup. Idea - Profit from knowledge of remote sensing systems - Instead of avoiding crosstalk – deal with it! Jet Propulsion Laboratory Rusty Lansford Scott Fraser Mary Dickinson Advanced Imaging Microscopy / Sebastian Tille Greg Bearman www.zeiss.com/lsm 13 Opening doors to new worlds in Laser Scanning Microscopy The new detection scheme Efficient PMT array with 32 elements Special grating as dispersive medium Covering entire emission spectral range Adjustable pinhole (x,y, diameter) Replaces one conventional channel Upgradeable Fast multiplexed electronic selection of PMT elements/combinations Patents pending Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 14 Opening doors to new worlds in Laser Scanning Microscopy Look inside the solution – LSM 510 META Based on the proven LSM 510 concept Multiple pinhole concept Adjustable pinholes (x,y, Ø) Efficient beam path Plus: META detector PMT array with 32 elements Reflection grating for even dispersion Capture full emission spectra Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 15 Opening doors to new worlds in Laser Scanning Microscopy System setup for life science LSM 510 META Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 16 Opening doors to new worlds in Laser Scanning Microscopy Advantages of the new technique (1) Electronic band selection => no moving parts Highly reproducible Settings can be stored and reused Highly stable Grating is temperature insensitive Real - Rapid - Reproducible - Reliable Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 17 Opening doors to new worlds in Laser Scanning Microscopy Advantages of the new technique (2) Fast linewise Multitracking with user defined emission bands More signal by using long pass settings Crosstalk free data (prerequisite for colocalization) Faster than framewise switching (better suited for live cell imaging) More than 4 dyes possible METATRACKING . . . . Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 18 Opening doors to new worlds in Laser Scanning Microscopy Advantages of the new technique (3) Fast electronic lambda acquisition Parallel acquisition of spectral data for all pixel Collects Lambda Stack (xy-l) with user definable number of elements Get the knowledge of the spectral conditions of individual pixels or defined areas (ROIs) Optimize channel setup for scanning accordingly Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 19 Opening doors to new worlds in Laser Scanning Microscopy Emission Fingerprinting - 3 easy steps 1. Acquire a single Lambda Stack or a series of Lambda stack(s) Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 20 Opening doors to new worlds in Laser Scanning Microscopy Emission Fingerprinting - 3 easy steps 1. 2. Acquire a single Lambda Stack or a series of Lambda stack(s) Select Regions of Interest (ROI) in the Lambda stack(s) or load reference spectra from Spectra Database Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 21 Opening doors to new worlds in Laser Scanning Microscopy Emission Fingerprinting - 3 easy steps 1. 2. 3. Acquire a single Lambda Stack or a series of Lambda stack(s) Select Regions of Interest (ROI) in the Lambda stack(s) or load reference spectra from Spectra Database Unmix Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 22 Opening doors to new worlds in Laser Scanning Microscopy Discover spectral signatures within ROIs ln l3 l1 l2 Advanced Imaging Microscopy / Sebastian Tille I l1 l2 l3 l4 www.zeiss.com/lsm ..... ln 23 Opening doors to new worlds in Laser Scanning Microscopy Which cells express CFP, GFP and YFP? Cell 1 Cell 2 Cell 3 1400 1200 1000 800 600 400 200 0 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 GFP CFP YFP Cell 1 = CFP Cell 2 = GFP Cell 3 = YFP M. Dickinson, R. Lansford, S. Fraser, BIC, Caltech Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 24 Opening doors to new worlds in Laser Scanning Microscopy Linear Unmixing – brief explanation Linear unmixing can determine the relative weights (abundance) of component spectra even when the individual spectra overlap + YFP 450 500 550 450 600 + CFP 500 550 600 GFP 450 500 550 600 .4*CFP+.4*GFP+.2*YFP .5*GFP+.5*YFP G. Bearman, JPL 450 Advanced Imaging Microscopy / Sebastian Tille 500 550 600 www.zeiss.com/lsm 25 Opening doors to new worlds in Laser Scanning Microscopy META + Emission Fingerprinting succeed! Insufficient separation using (variable) band pass detection Advanced Imaging Microscopy / Sebastian Tille Crosstalk-free separation using Emission Fingerprinting www.zeiss.com/lsm 26 Opening doors to new worlds in Laser Scanning Microscopy Principle of Linear Unmixing =a× +b× GFP Advanced Imaging Microscopy / Sebastian Tille YFP www.zeiss.com/lsm 27 Opening doors to new worlds in Laser Scanning Microscopy Content Status Quo Open issues The new detection method Features and benefits Application examples A new way for FRET experiments Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 28 Opening doors to new worlds in Laser Scanning Microscopy Multi-fluorescence with Metatracking Example - Metatracking: DAPI, Alexa Fluor 488, Cy3, Cy5 Developing eye of the zebrafish; Green - cell adhesion molecule Tag-1 (Alexa Fluor 488) Red - tubulin (Cy3) Purple - sugar epitope PSA (Cy5) Blue - cell nuclei (DAPI) Track 1 (488/633) Track 2 (364 /543) METATRACKING the enhanced Multitracking Dr. M. Marx, Prof. M. Bastmeyer, University of Konstanz, Germany Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 29 Opening doors to new worlds in Laser Scanning Microscopy The issue: FP’s spectra do overlap! Fluorescent Proteins are essential for life science studies. However, overlapping emission AND excitation spectra and corresponding crosstalk makes combinations difficult for imaging! (especially true for multiphoton imaging) Data from Clonetech, Inc. www.clonetech.com Advanced Imaging Microscopy / Sebastian Tille Heavy overlap! www.zeiss.com/lsm 30 Opening doors to new worlds in Laser Scanning Microscopy Separating 2 FPs – GFP and YFP Example 2 – Emission Fingerprinting: GFP and YFP (Distance of emission peaks approx. 12nm) Human epidermoid tumor cells A431 expressing GFP and a YFP-Rab11 fusion protein Sample: Jochen Rink, Max Planck institute for Cell Biology and Genetics, Dresden, Germany Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 31 Opening doors to new worlds in Laser Scanning Microscopy Separating 2 FPs – GFP and YFP Example 2 – Emission Fingerprinting: GFP and YFP (Distance of emission peaks ca. 12nm) A431 cells expressing GFP, Rab11-YFP GFP Advanced Imaging Microscopy / Sebastian Tille YFP www.zeiss.com/lsm overlay 32 Opening doors to new worlds in Laser Scanning Microscopy Separating 3 FPs – CFP, GFP, YFP Examples 3 and 4 – Emission Fingerprinting: CFP, GFP and YFP • Cultured cells expressing CFP-RanGAP1, GFP-emerin und YFP-SUMO1 • Mixture of NIH3T3 cells expressing either CFP, GFP or YFP Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 33 Opening doors to new worlds in Laser Scanning Microscopy Separating 3 FPs – CFP, GFP, YFP Examples 3 and 4 - Emission Fingerprinting: CFP, GFP and YFP • Cultured cells expressing ECFP-RanGAP1, EGFP-emerin und EYFP-SUMO1 • Mixture of NIH3T3 cells expressing either CFP, GFP or YFP CFP GFP YFP CFP, GFP, YFP Courtesy: Prof. Y. Hiraoka, KARC, Kobe, Japan; Mary Dickinson, PhD, Caltech, Pasadena, USA Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 34 Opening doors to new worlds in Laser Scanning Microscopy High Overlap - Separating GFP and FITC Example 5 – Emission Fingerprinting: GFP and FITC (Distance of emission peaks 7nm) Cultured fibroblasts expressing a GFP-Histone2B fusion protein, actin filaments stained with FITC-phalloidin Excitation: 488nm Emission Fingerprinting Emission: bandpass 505-530nm FITC GFP Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 35 Opening doors to new worlds in Laser Scanning Microscopy Emission Fingerprinting – GFP & FITC Example 5 – Emission Fingerprinting: GFP and FITC (Distance of emission peaks 7nm) Cultured fibroblasts expressing a GFP-Histone2B fusion protein (green), actin filaments stained with FITC-phalloidin (red) GFP FITC Clear separation of signals despite heavy spectral and spatial overlap of emission spectra Sample: Mary Dickinson, PhD, Caltech, Pasadena, USA Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 36 Opening doors to new worlds in Laser Scanning Microscopy Ultrahigh Overlap – Sytox Green & FITC Example 6 – Emission Fingerprinting: Sytox Green (nuclei) and FITC (actin filaments) in cultured fibroblasts Sample: Mary Dickinson, PhD, Caltech, Pasadena, USA Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 37 Opening doors to new worlds in Laser Scanning Microscopy Emission Fingerprinting – Example Example 6 – Emission Fingerprinting: Sytox Green (nuclei) and FITC (actin filaments) in cultured fibroblasts FITC Sytox Green overlay Sample: Mary Dickinson, PhD, Caltech, Pasadena, USA Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 38 Opening doors to new worlds in Laser Scanning Microscopy Separating 4 FPs – CFP, CGFP, GFP, YFP Example 7: CFP, CGFP, GFP and YFP Cultured cells expressing 4 FPs in ER, nuclei, plasma membranes and mitochondria, repectively Sample: Drs. Miyawaki, Hirano, RIKEN, Wako, Japan Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 39 Opening doors to new worlds in Laser Scanning Microscopy Emission Fingerprinting – 4x FP challenge Example 7– Emission Fingerprinting: CFP, CGFP, GFP and YFP Cultured cells expressing 4 FPs in ER, nuclei, plasma membranes and mitochondria, respectively (can be excited with single wavelength from either single or multiphoton laser) CFP CGFP GFP YFP Sample: Drs. Miyawaki, Hirano, RIKEN, Wako, Japan Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 40 Opening doors to new worlds in Laser Scanning Microscopy FRAP & Emission Fingerprinting Example 8: FRAP with Emission Fingerprinting ROI 1 Experiment: Pixel-precise bleaching of GFP and YFP GFP ROI 2 ROI 2 ROI 1 Result: Slow flow-back of GFP from the cytoplasm and adjacent nucleus into the bleached nucleus; free GFP passes the nuclear membrane YFP Sample: Dr. F. Boehmer, Friedrich Schiller University Jena, Germany Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 41 Opening doors to new worlds in Laser Scanning Microscopy Eliminate background Tissue section of the adrenal gland stained with Alexa 488 conjugated antibody 3000 2500 2000 1500 1000 500 0 509 519 529 539 section background Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 549 559 569 Alexa 488 42 Opening doors to new worlds in Laser Scanning Microscopy FRET - Basics Yellow Cameleon 2 as internal Ca2+-sensor Can be expressed in living cells as internal Ca2+-reporter low Ca2+ no FRET high Ca2+ FRET (conformation change) A. Miyawaki, RIKEN, Wako, Japan Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 43 Opening doors to new worlds in Laser Scanning Microscopy FRET with LSM 510 META Advantage for META detection over standard bandpass imaging Conventional FRET acquisition Lambda Stack Acquisition Emission Emission no FRET FRET 460 480 500 520 540 560 580 600 460 480 Wavelength (nm) • Detection of two narrow emission bands • Some signal is discarded Advanced Imaging Microscopy / Sebastian Tille 500 520 540 560 580 600 Wavelength (nm) • Complete emission detection • No signal is discarded www.zeiss.com/lsm 44 Opening doors to new worlds in Laser Scanning Microscopy FRET & Emission Fingerprinting Step 1: Aquire complete emission via Lambda Stack acquisition Series of Lambda Stacks acquired over time (xylt) 0s 100 s 200 s 300 s Y. Hiraoka, KARC, Kobe, Japan/ A. Miyawaki, RIKEN, Wako, Japan Cytoplasmic expression of Yellow Cameleon2 in a cultured cell Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 45 Opening doors to new worlds in Laser Scanning Microscopy FRET & Emission Fingerprinting Step 2: Linear Unmixing via Spectral Signatures and Reference Spectra Reference spectra Intensity Stimulus YFP FRET CFP Time (s) Y. Hiraoka, KARC, Kobe, Japan/ A. Miyawaki, RIKEN, Wako, Japan Cytoplasmic expression of Yellow Cameleon2 in a cultured cell Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 46 Opening doors to new worlds in Laser Scanning Microscopy FRET & Emission Fingerprinting Step 3: YFP/CFP ratio Reference spectra YFP/CFP ratio Intensity Stimulus FRET Time Higher information density ...Lambda Stacks Y. Hiraoka, KARC, Kobe, Japan/ A. Miyawaki, RIKEN, Wako, Japan Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 47 Opening doors to new worlds in Laser Scanning Microscopy More Advantages with META Combines scanning flexibility with enhanced detection possibilities Combination of Conventional & Multispectral Imaging (META is an additional detector – nothing is taken away!) Superior technology driven by application needs Multiple pinholes benefits Fast excitation & emission Multitracking - Metatracking Fast electronic Lambda Stack acquisition Adding the spectral dimension, xyz-t-l Clear spearation of channels with Emission Fingerprinting Upgradeable Increased experimental freedom for upcoming applications Multi FP imaging Separation of background or autofluorescence Perfectly suited for single and multiphoton excitation Multi-FRET! Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 48 Opening doors to new worlds in Laser Scanning Microscopy Opening doors to new worlds! Thank you for your attention! Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 49 Opening doors to new worlds in Laser Scanning Microscopy More Information! Laser Scanning Microscopy www.zeiss.de/lsm Fluorescence Correlation Spectroscopy www.zeiss.de/fcs Mirrored at www.zeiss.com Workshop on FCS sponsored by Zeiss in May 21st, 22nd, St. Louis, USA register via internet! Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 50 Opening doors to new worlds in Laser Scanning Microscopy Sensitivity comparison (green emission) META PMT 2 Sytox Green and Fitc-Phalloidin Gain=900 458 EX 502-545nm Advanced Imaging Microscopy / Sebastian Tille Sytox Green and Fitc-Phalloidin Gain=1250 458 EX 505-550nm BP www.zeiss.com/lsm 51 Opening doors to new worlds in Laser Scanning Microscopy Sensitivity comparison (red emission) META PMT 3 ToPro-3 Gain=900 543 EX 587-800nm Advanced Imaging Microscopy / Sebastian Tille ToPro-3 Gain=1250 543 EX 585nm LP www.zeiss.com/lsm 52 Opening doors to new worlds in Laser Scanning Microscopy How much overlapping is resolvable? Fluorochrome Emission Peak DiOa 506nma eGFPb 507nmb Alexa 488a 519nma Fluoresceina 519nma Oregon Greena 526nma Sytox Greena 524nma ToPro-1a 531nma a Molecular Probes, Eugene, OR b Clonetech Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 53 Opening doors to new worlds in Laser Scanning Microscopy Green dyes with close emission peaks 120 120 100 100 80 80 60 60 40 40 20 20 0 490 500 510 520 530 540 GFP 550 560 570 580 507 0 490 510 520 DiO 530 Alexa488 120 120 100 100 80 80 60 60 40 40 20 20 0 490 500 540 550 560 570 519580 Fitc-Phall 0 500 510 520 530 OreGrn 540 SytoxGrn Advanced Imaging Microscopy / Sebastian Tille 550 560 570 580 525 490 500 510 520 530 540 ToPro1 www.zeiss.com/lsm 550 560 570 580 531 54 Opening doors to new worlds in Laser Scanning Microscopy Shades of Green 120 100 80 60 40 20 0 490 500 510 OreGrn Advanced Imaging Microscopy / Sebastian Tille 520 GFP 530 DiO 540 Fitc-Phall 550 Alexa488 www.zeiss.com/lsm 560 SytoxGrn 570 580 ToPro1 55 Opening doors to new worlds in Laser Scanning Microscopy Results of pairwise comparison Alexa488 DiO FITC GFP Ore Green Sytox ToPro1 Alexa488 DiO Not Attempted FITC NO Not Attempted GFP YES NO YES Ore Green YES* Not Attempted YES* YES Sytox YES* YES YES* YES NO ToPro1 YES YES YES Not Attempted YES YES * Probe concentration must be balanced Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 56 Opening doors to new worlds in Laser Scanning Microscopy Colors… Whatever comes next… new XFP variants? CGFP Alexa 350 CFP Alexa 488 Alexa 543 Alexa 568 GFP YFP DsRed DiA DAPI Hoechst Advanced Imaging Microscopy / Sebastian Tille DiI Fluorescein Oregon green DiO www.zeiss.com/lsm Rhodamine Texas Red DiD 57 Opening doors to new worlds in Laser Scanning Microscopy Two-photon excitation Whatever comes next… Alexa 350 Fluorochromes Excited at 830nm Alexa 488 CGFP CFP Alexa 568 new XFPs variants? DsRed YFP GFP DiA DAPI Hoechst Advanced Imaging Microscopy / Sebastian Tille Alexa 543 Fluorescein Oregon green DiO www.zeiss.com/lsm DiI Rhodamine Texas Red DiD 58 Opening doors to new worlds in Laser Scanning Microscopy Multi-dimensional analysis of living cells X, Y and t X, Y and Z tn zn z3 t2 z2 z1 t3 t1 X, Y and l ln l3 3 spatial dimensions 1 time dimension multiple colors, lifetimes, intensity + molecular genetic analysis l2 l1 Advanced Imaging Microscopy / Sebastian Tille www.zeiss.com/lsm 59