After a full year in this class, you should know, at a minimum: 1. Most science experiments use a control (normal condition) group and an experimental group (with a single variable changed or manipulated). 2. A hypothesis is the “predictive statement” being tested in an experiment. It usually takes the form of: “The more (Independent variable) used, the more (Dependent variable) occurs.” Ex. The more ultraviolet light exposure on a skin cell, the greater the frequency of skin cancer. -The Independent variable is the amount of violet light exposure-this is what I, the scientist, change during the experiment. -The Dependent variable is the frequency of skin cancer-the data collected as a result. 3. Data collected should be in easily measured units; organized in a table or graph. In a 2 column table, 1st column is the Ind. var. or “x” axis; 2nd column is the Dep. var. or “y” axis. In a 3 column table, 1st is “label” for the group, 2nd the Ind. var, 3rd the Dep. var.. On a graph, the Ind. var. is on the “x” axis; Dep. var. is on the “y” axis. UV light exposure (lumens) 100 500 1000 2000 Skin cancer (# of cells) 8 120 250 450 OR Group A B C D UV light exposure (lumens) 100 500 1000 2000 Skin cancer (# of cells) 8 120 250 450 On the graph shown: -the Ind. var. is “Auto. Speed.” -the Dep. var. is “Cost of the average speeding ticket.” Hypothesis probably stated: “The greater the auto’s speed, the greater the cost of the speeding ticket.” (Note: Data points may be connected “dot to dot” OR with an “average trend” line.) 4. To improve any experiment: a) increase the sample size; b) repeat the test; or c) “control for other factors” that might also have influenced the results. 5. If in doubt, the “other factors to control for” include: size of containers, amount of water used, temperature of room, age/health of the test subjects as long as these were NOT the independent variable(s) in the hypothesis. 6. Metabolism is the “sum of all life functions.” Common life functions include: Growth – increase in cell size or number of cells Respiration – “the release of energy from food” C6H12O6 + O2 CO2 + H2O and lots of ATP (energy carriers) Regulation – keeping conditions relatively similar; homeostasis; react/respond Reproduction – make offspring to continue life of your species Asexual – one parent, identical offspring Sexual – two parents, non-identical offspring; meiosis to make gametes followed by fertilization to make zygote which becomes embryo baby Excretion – removal of metabolic wastes Nutrition – obtaining and converting food into smaller, easily moved forms - autotrophic nutrition means “makes own food” or photosynthesis - heterotrophic nutrition means “eats” and digests other organisms Transport – move items around body (ex. circulation of food/wastes/oxygen in blood OR pushing food down intestines by peristalsis) 7. There are several biochemical equations to MEMORIZE: Aerobic respiration (in mitochondria) Sugar + Oxygen Carbon dioxide + Water and lots of ATPs Anaerobic respiration (aka fermentation) (in cytoplasm) Sugar alcohol + Carbon dioxide OR Lactic acid Photosynthesis (in chloroplasts) (Note: Photosynthesis is “the opposite” of aerobic respiration.) Carbon dioxide + Water and Sunlight Sugar + Oxygen Digestion of big molecules into “building blocks” Starch many simple sugar molecules Proteins many amino acids 8. Parts of cells are called “organelles.” ALL cells have a semi-permeable cell membrane and cytoplasm (cell goo). Ribosomes make proteins under direction from the mRNA. Mitochondria are the site of aerobic respiration, releasing energy from food. Vacuoles are storage sacs. Cell walls are rigid structures around plant cells that give them shape. Chloroplasts are the site of photosynthesis. Nucleus contains DNA (genetic info) that codes for making proteins. Recognize plant cells usually have chloroplasts, cell wall, larger vacuoles. 9. A cell is the “unit of structure and function” for living organisms. Cells come from other cells. Cells may be organized as: Organelle Cell tissue organ organ system large organism 10. Genetic information is found in the sequences of bases of a DNA. A single gene codes for a single protein. Genes are found on chromosomes which are in the nucleus of a cell. 11. The “double helix” is DNA. The “big X shape” is a “replicated chromosome.” 12. DNA is read by mRNA in the nucleus. mRNA moves out to the cytoplasm. mRNA tells tRNA at the ribosome which amino acids to join together. 13. During mitosis for “normal growth and repair of cells” DNA is exactly copied and each new cell has identical DNA. Mitosis = “binary fission” or “asexual reproduction of a single cell.” 14. Meiosis is “the making of gametes.” Male gametes are sperm. Female gametes are eggs. Gametes have ½ the DNA of a normal body cell and gametes are not identical. 15. Fertilization is the “union of gametes” which make a zygote. The zygote then uses simply mitosis to become an embryo, then fetus, then baby. 16. Sexual reproduction involves both meiosis and fertilization and guarantees that the offspring show a variety of traits—a mix of traits from each parent. 17. Ecology of the “study of living things and their interactions with each other and their environment.” This involves biotic factors (“living organisms”) and abiotic factors (“non-living factors” such as gases, water, heat, light, space, and minerals). 18. Organization of living things studied in ecology follows the pattern of: Individual organism all individuals of one species in one area (population) All populations of different species in one area community Community AND all abiotic factors in one area ecosystem Similar ecosystems in a large area biome All biomes on earth biosphere Summarized: Individual Population Community Ecosystem Biome Biosphere 19. The flow of energy in an ecosystem generally follows the pattern of: Sun (light) Producers (photosynthesis) Herbivores (plant eater) Carnivores (meat eater) 20. Only 10% of the energy from any organism moves up to the next trophic (feeding) level. A food chain and a biomass pyramid basically show the same things. 21. A food web shows a number of interconnected food chains. One may find omnivores in a food web (eating both plant and animal material). Rarely, one may find decomposers in a food web (eating almost everything and recycling the material in organisms). In a food chain or food web, the “” is read as “is eaten by.” 22. Decomposers are bacteria and fungi; they recycle nutrients. 23. Relate a pyramid to a chain. Kelp (producer) Sea Urchin (herbivore/first consumer) Sheephead (carnivore/second consumer) Giant Sea Bass (carnivore and “top consumer) With 2000 kilograms of kelp, one may have 200 kg of sea urchin, 20 kg of sheephead, and only 2 kg of giant sea bass. 24. Nutrients may recycle through an ecosystem. Water cycle: Evaporation, Condensation, Precipitation, Run-off, and long term Storage in oceans. (Repeat) Nitrogen cycle: Bacteria use nitrogen in air to make nitrates for plant use; plants make proteins; animals and bacteria convert proteins into ammonia, urea, and other proteins. Bacteria recycle most of the rest of the nitrogen. Carbon cycle: carbon dioxide is used by plants to make sugar (glucose) by photosynthesis. Plants and animals use sugar as an energy source (by aerobic respiration) to make carbon dioxide. Any nutrient needed only in “small amounts” is called a “trace nutrient” and shortages of a particular nutrient (trace nutrient or major nutrient) makes that nutrient a “limiting factor.” 25. Ecologic succession is “the replacement of one community by another at a single place over a period of time.” The first organisms in the area are pioneers, commonly mosses or lichen. The plant life tends to get larger as succession continues. Grasses, shrubs, and trees tend to follow in that order. The final, stable community that remains for a long time is the climax community. Primary succession occurs when no life existed in the area at the beginning (volcanic island). Secondary succession occurs when a stable community has been disturbed by minor fire or other problem. Commonly used examples for succession are shown. 26. Some ecology terms to memorize: Niche – organism’s role or job in an ecosystem; if two organisms have the same niche, they will compete with each other. Habitat – place where an organism lives; if two organisms have the same habitat but do not have the same niche, they will live nicely with each other Predator – an organism that hunts and kills another organism (prey) for food Parasite – an organism that hurts another organism (host) by using it (often for food) but generally does not want to kill the host. Ex. tapeworms (parasite) in human (host) intestines Symbiosis – a special relationship between two different species; if helpful to both (mutualism); helpful to one but other does not care (commensual); helps one but hurts the other (parasitism). 27. A simple comparison of “good vs bad” actions for ecology. Good actions Bad actions Bad because it…. a) Use native organisms Import non-native organisms -may become invasive -disrupts the food web b) Preserve species Kill organisms -will reduce biodiversity -may disrupt food web c) Use natural predators for Spray pesticides and -may bio-accumulate and hurt insect control other chemicals other species up food chain d) Use renewable energy Burn dirty fossil fuel -CO2 may cause global warming (solar, wind, hydro) (coal, petroleum, gas) -SO2 causes acid rain -future generations won’t have this finite resource to use e) Human population control Overpopulation -humans act as invasive species -humans over-use scarce resources f) Preserve bio-diversity Reduce bio-diversity -low bio-diversity = low stability of ecosystem; poor response to change 28. Biomes change as the climate (long term weather) changes, such as: moving farther from equator or moving up a mountain. Land biomes include: Desert – dry with large changes in day/night temperature Tropical rain forest – warm and wet, high biodiversity with low population numbers Temperate deciduous forest – four seasons with trees that drop their leaves Grasslands – have grasses with wet/dry seasons Alpine areas are like tundras –cold with permafrost and low growing plants (if any) Marine biomes include: Deep sea abyss – constant conditions of cold, dark, and barren Estuary – where salt and fresh water mix; highest biodiversity and productivity! 29. The most common elements in a living thing are: Carbon, Hydrogen, Oxygen, Nitrogen, and some Phosphorus and Sulfur. (CHONPS) -Carbohydrates CH2O (glucose = C6H12O6) “-ose” is suffix meaning sugar. Glucose is used as: “quick energy” and for moving energy from cell to cell. Starch and glycogen are huge molecules made from thousands of glucoses – used for “long term storage of sugars.” Huge molecules do not move from cell to cell. -Proteins CHON (a string of amino acids make keratin, insulin, lipase, lactase) “-in” is suffix meaning “protein that is not an enzyme” “-ase” is suffix meaning “protein that is an enzyme” Proteins are used as: structures; chemical messengers (hormones); message receivers (receptors); cellular name tags (antigens); or to “speed up a reaction rate” (act as an enzyme). When proteins are working, shape matters! A specific shape is needed for a specific function. If the shapes do not fit, the protein does not work! Ex. Enzyme-substrate or antigen-antibody Enzyme shape temporarily changes due to changes in pH; permanently by high temperature. “Destroyed enzyme” = “denatured.” -Lipids (also called fats and oils) CHO (big molecules made from glycerol and fatty acids) Lipids are used as: very long term energy storage or as water barriers (in cell membrane). -Nucleic acids CHONPS (double helix of DNA or the smaller single strand of RNA) Nucleic acids carry the “coded messages to make proteins” and are the “genetic materials” used to transfer information on traits from parent to offspring. -Compounds that contain both Carbon and Hydrogen are “organic compounds.” Common organic compounds include: carbohydrates, proteins, lipids, and nucleic acids. ATP is a special organic compound that is used as the “immediate energy carrier inside of cells.” -Compounds that do not contain both Carbon and Hydrogen are “inorganic compounds.” The most common inorganic molecules include: water (H2O), carbon dioxide (CO2), and common salt (NaCl). Water is the most common compound in any living organism! -pH is a measurement of the acidity of a solution. A very low pH (1-3) is very acidic. Slightly low pH (4-6) is slightly acidic. pH of 7 is “neutral.” Slightly high pH (8-10) is slightly basic. A very high pH (11-14) is very basic. Any pH value that is very low or very high tends to harm living things by changing the shapes of their enzymes and disrupting metabolic reactions. 30. Transport processes in cells: Diffusion is movement of small molecules across a membrane from high concentration to low concentration until both sides are equal. Diffusion has no energy need. -Cells placed in hypertonic (lots of stuff) solutions shrink. -Cells in hypotonic (almost pure water) solution will swell. Active transport is movement of molecules across a membrane from low to high concentration and maintains an unequal situation. Active transport requires energy use. 31. Homeostasis – maintain fairly constant internal conditions (dynamic equilibrium) by making slight responses to changing stimuli. Body regulation is rapid and short duration for nervous control; slower and longer duration for endocrine (hormonal) control. Both systems use receptors. 32. Graphs for homeostasis or dynamic equilibrium are similar. “Hormonal control” example is: blood sugar control by insulin (glucose goes in to the cell; out of the blood) and glucagon (glucose be gone from the cells and into the blood). 33. Genetics – study of how traits are passed from parents to offspring Gene – portion of chromosome coding for a single trait. There may be several versions of genes. If only one copy needed to show trait, trait is dominant (G). If all copies must be the same to show trait, trait is recessive (g). Some traits are controlled by “blending of traits” (Red – pink – white flowers ) or by multiple genes (the many different blood types (A, B, AB, O). Other traits are “expressed” (turned on/off) by outside influences (freckles on skin with sun or fur color changes with temperature for rabbits/foxes). Sexual recombination of traits due to meiosis and fertilization is the main reason for variety. Mutations (or accidental DNA changes) account for “new” traits. Mutagens (radiation, cancer-causing chemicals, etc) trigger mutations. Body cell mutation may cause cancer; but sex cell mutation may be passed on to offspring. Modern genetic engineering has allowed transfer of individual genes from one organism into the cell of very different organisms/species. (Human insulin may be made by genetically modified bacteria.) Cloning allows the entire set of genes from one cell to be placed into another cell – making it possible to have many “identical twins, triplets, etc.” Stem cell research has allowed different tissues to be changed into clones of the original organism. Traits may be predicted by analyzing ancestors (in a pedigree chart); directly calculating % odds in offspring (Punnett Squares); direct reading of genes by karyotyping and/or gene sequencing. Ethical issues are common with genetic issues. What is normal? How to deal with genetic diseases? Should we manufacture “new organisms” or “play God”? 34. Evolution or “natural selection” is an explanation how populations (not individual organisms) change over many generations. Darwin suggested: a) variations exist; b) overpopulation leads to competition for scarce resources; c) only traits found in survivors are passed on (“fittest” organisms tend to have more offspring than sickly or dying organisms); d) traits found within populations change over time. Organisms are considered “best adapted” if they have traits that allow them to have many offspring. (For biology classes, never say that “an individual organism adapts” or that an organism “needs to” do anything; these phrases only work for psychology or sociology classes!!!) “Survival of the fittest” only means the organism had a certain set of traits and now has many descendents. The opposite of evolution is “extinction” for the species. 35.Conditions favoring evolution: a) large variation of traits; b) high rates of mutation and/or sexual recombination of genes; c) a changing environment; d) shorter life cycles; e) initially wide dispersal of population followed by isolation under different conditions. 36. Evidence for evolution: a) fossil layers in sedimentary rocks; b) comparison of similar structures (homologous structures); c) comparative biochemistry, esp. similar genes or parts of genes using gel electrophoresis; d) comparing embryo development. Modern example - development of drug resistant bacteria. 37. There is NO direction to evolution. Most species develop by “being lucky” and surviving catastrophes that killed off the competition. Examples include: 1) photosynthesis made excess oxygen - - killed off many of the original life forms which did not use oxygen (anaerobes) but also allowed for development of ozone layer that blocks UV rays (that otherwise kill or cause skin cancers) and allowed for aerobic (oxygen using) organisms to evolve; 2) Ice Ages reduce sea levels and the cold kills off more “cold-blooded” organisms allowing the “warm-blooded” organisms to take over the now vacant areas; 3) meteor crashes near Mexico – triggers events that kill off dinosaurs and allow mammals to take over; 4) virus outbreaks/major plagues may wipe out populations for reasons completely separate from typical “survival of the fittest” issues. 38. Disease is a disturbance in the normal homeostastis/metabolism of an organism that harms the organism. Some diseases are infectious: bacteria, fungi, viruses, and some protozoans may cause disease and spread from one sick person to a healthy person (often by touching, aerosol from coughs, direct body fluid contact, or through a “vector organism” such as mosquito, tick, or flea). Other diseases and non-infectous: exposure to toxic chemicals/occupational considerations; genetic, cancer, hormonal imbalances, psychological, or simple “wear and tear” issues (osteoarthritis). Noninfectious diseases are not passed from a sick person to a healthy one. Know examples of each type of disease, its normal progression, how it is diagnosed, and its treatment or cure. Different bacterial infections may be cured by different antibiotics. Viral infections may be prevented by vaccination (exposure to weakened virus to “alert” your immune system); the viral disease then “runs its normal course” or a shortened period if an anti-viral medicine is used. Fungal infections take a long time to respond to anti-fungal medicines – TB, leprosy, athletes foot. Protozoans cause many common parasitic diseases – malaria. Cancer is “uncontrolled cell growth.” “In situ” is “in one place” and may be cut out. “Metastatic” cancer is potentially “anywhere in the body” so needs chemotherapy and/or radiation treatment. What is the role of public health departments in the prevention of disease? Common healthy living strategies may include…. 39. Classification (or taxonomy) often uses a dichotomous key to identify different organisms. The basic organization is: Kingdom, phylum, class, order, family, genus, species. Prokaryotes are bacteria – the simplest organisms; no nucleus. Eukaryotes are every other type of life – with a nucleus. The five kingdom system: Monera (bacteria); Protista (ameba, paramecium); Fungi, Plants, and Animals. In a phylogenetic tree, the most related organisms share a “recent common ancestor.” 40. Human body systems: Nervous, Circulatory, Endocrine, Excretory, Reproductive, Muscular, Skeletal, Respiratory. Many organs are part of several body systems. Recall common seventh grade themes: RBC- carry oxygen; WBC – fight infection (immunity); bones – support/locomotion/make blood; digestive system – breaks down food into smaller, easily absorbed molecules in the small intestines; liver – processes chemicals; lungs – gas diffusion; muscles - work by contraction often in opposing pairs.