Name ______________________________ Date _______________ Biology I Fall Semester Exam Review Directions: Answer the following on your own paper for extra credit on your exam. I. Scientific Method/Process of Science and Graphing 1. Define the following terms: a. Controlled experiment – an c. Experimental group – the group experiment with only one independent variable being tested. d. Independent variable – the b. Control group – the group with variable that the experimenter no manipulation. *used for comparison* changes. e. Dependent variable – variable that changes as a result. 2. What variable is always graphed on the X axis? Independent (MIX) What variable is graphed on the Y axis? Dependent (DRY) 3. When is a bar graph used? Comparison When is a line graph used? Show relationship 4. List the steps of the scientific method and briefly describe each. 1. Problem – make observations to find a question to be studied 2. Hypothesis – make an educated guess to answer the problem *must be testable* 3. Prediction – what you expect to happen if the hypothesis is true 4. Experiment – Test the hypothesis, collect data 5. Conclusion – Summary of the results *Evaluates the hypothesis* 5. Define the following terms: a. Reproduction – the process of generating new individuals of the same kind. b. Evolution – change over time c. Metabolism – obtaining and using energy d. Homeostasis – stable internal environment e. Development – grow and develop 6. List the characteristics of living things. Made of cells, reproduce, based on a universal genetic code (DNA), grow and develop, obtain and use materials and energy (metabolism), respond to their environment (stimuli), maintain a stable internal environment (homeostasis), taken as a group living things change over time (evoluation). 7. Define the following and place in order from smallest to largest: Page 1 a. biosphere c. community b. ecosystem d. population e. species species population community ecosystem biosphere 8. Define the following and place in order from smallest to largest: a. cell c. organism b. organ system d. organ e. tissue cell tissue organ organ system organism II. The Cell 1. Describe the following scientists’ contributions to cellular biology: a. Virchow – cells form from other cells c. Schwann – animals made of cells b. Hooke – coined the term “cells” d. Schleidan – plants made of cells 2. What are the three parts of the cell theory? 1. Living things are composed of one or more cells 2. Cells are the basic units of structure and function in organisms 3. Cells are produced only from other cells. 3. For the following, write a “P” if it belongs to a plant; write an “A” if it belongs to an animal; write “B” if it applies to BOTH a plant and animal cells; write “N” if it applies to neither: Cell membrane B Golgi body B Ribosomes B Cytoplasm B Chloroplast P Large vacuole P Cell wall P Mitochondria B Small vacuole A Nucleus B SER B Prokaryotic N Nucleolus B RER B Eukaryotic B 4. Copy the following chart. Place an “X” in the box if the characteristic applies to the type of cell. cell membrane DNA cytoplasm Bacteria X X X Plants X X X Animals X X X cell wall, chloroplasts X nucleus membrane-bound organelles X X X X Page 2 5. Copy and fill in the following chart: Organelle and Sketch Mitochondria Nucleus Function Provides energy Contains genetic material Nucleolus Ribosome synthesis Ribosome Protein synthesis Rough Endoplasmic Reticulum Vacuole Makes & transports proteins Stores food and water Chloroplast Energy conversation – plants only Centrioles Aids in cell division – animals only Golgi Apparatus Plasma Membrane Cell Wall Packages and distributes Barrier around cell Protection, shape, structure – plants only Lysosome Smooth Endoplasmic Reticulum Cytoplasm Digestive enzymes- break down waste Makes lipids Location of all organelles 6. Give the main function of each of the following organic macromolecules: a. Lipid – store energy. Made of glycerol head and 3 fatty acid tails b. Nucleic Acid – store and transmit genetic info. Monomer - nucleotides c. Carbohydrate- Energy. Monomer- simple sugars d. Protein –act as enzymes, transport materials, muscles. monomers- amino acids 7. Give the monomer (building block) of each of the above next to its description. Page 3 8. Draw and label plasma membrane with the following components/labels: a. embedded (integral) proteins e. fatty acids b. lipid bilayer f. head c. individual phospholipids g. hydrophilic d. cholesterol h. hydrophobic Lipid bilayer 9. What is passive transport? Movement of particles from areas of high concentration to low. No energy required. Example: 1. diffusion 2. facilitated diffusion – needs transport protein 3. osmosis – diffusion of water molecules. 10. Describe each of the 3 types listed above. 11. Describe what happens to a cell placed in the following solutions and what happens to the net movement of water: a. Isotonic – concentration inside and outside cell are the same = no net water movement b. hypertonic – concentration of water is greater inside the cell = water moves out c. hypotonic – concentration of water is greater outside the cell = water moves in 12. What is active transport? Movement of particles from areas of low concentration to high. Movement against the concentration gradient. Requires energy and a transport protein. 13. Compare and contrast exocytosis and endocytosis. Exocytosis- movement of particles out of a cell. Endocytosis – movement of particles into a cell 14. Suppose a certain protein is needed outside of the cell. Describe the pathway of the protein from its synthesis to its exit from the cell. The involved organelles are listed. Please give the correct order in which the organelles would be used and briefly explain how each is involved. Page 4 a. Plasma Membrane b. Ribosomes c. Nucleus d. Vacuoles e. Golgi Apparatus f. Rough E. R. g. Nuclear Membrane h. Nucleous Ribosome is made in the nucleous. Directions for the protein are found coded in the DNA which is found in the nucleus. The message is transcribed into RNA and travels from the nucleus to the ribosome (on the rough ER). The protein is constructed at the ribosome and gets modified in the rough ER. The protein then travels to the golgi to be packaged and distributed. The protein travels in a vacuole to the plasma membrane and leaves the cell by exocytosis. III. Photosynthesis 1. Define autotroph and give an example of an organism that is an autotroph. An organism that makes its own food. Ex: plants 2. Define heterotroph and give an example of an organism that is a heterotroph. An organism that must obtain its nutrients from another source. Ex: humans 3. Copy the following chart. Place an X in the appropriate boxes. ATP ADP Contains Adenine X X Contains Ribose X X Contains 3 phosphates X Contains 2 phosphates X “fully charged battery” X “partially charged battery” X 4. Write the balanced equation for photosynthesis. 6CO2 + 6H2O C6H12O6 + 6O2 a. Label the reactants. CO2 AND H2O b. Label the products. C6H12O6 AND O2 c. Label the reactants and products in the LDR. H2O AND O2 Page 5 d. Label the reactants and products in the LIR. CO2 AND C6H12O6 5. What is the function of a pigment? Absorb light in the thylakoid 6. What main pigment do chloroplasts contain? Describe the colors that this pigment absorbs and the main colors that it reflects. Chlorophyll, absorbs all colors, reflects green 7. What is the organ of photosynthesis? What organelle is found in the cells of this organ? chloroplast 8. Draw the organelle of photosynthesis and include the following: a. Thylakoids b. Stroma 9. Sketch the light dependent reactions (LDR) that occur along the thylakoid membrane of the chloroplast. Include the following AND label: a. light i. light o. NADP+ b. chlorophyll j. electron p. NADPH c. Photosystem II d. Photosystem I e. Water transport chain k. NADP+ reductase f. Oxygen l. ATP synthase g. H+ ions m. ADP + P h. electrons n. ATP Page 6 10. Draw a chloroplast and sketch the Calvin Cycle (LIR). Include the following (label): a. Stroma b. Carbon dioxide c. Glucose d. NAPDH e. ATP 11. Describe how the Calvin Cycle depends on the Light Dependent reactions. The dark reaction uses the ATP and NADPH made in the light reaction to turn CO2 into glucose. IV. Cellular Respiration 1. Write the balanced equation for cellular respiration. C6H12O6 + 6O2 6CO2 + 6H2O + ATP a. Label the reactants. C6H12O6 + 6O2 b. Label the products 6CO2 + 6H2O + ATP 2. What is the organelle of cellular respiration? Mitochondria What other part of the cell is involved? Cytoplasm 3. What is the difference between aerobic and anaerobic respiration? Aerobic- with oxygen. Anaerobic- no oxygen Which types of organisms perform each? Anaerobes (some bacteria); anaerobic respiration. Aerobic – animals, plants, etc. 4. What is the first step of cellular respiration? Glycolysis What is broken down in this step? Glucose What is produced? 2 pyruvate, 2 ATP, 2NADH 5. If there is no oxygen present, what happens after glycolysis? Fermentation 6. What is fermentation? Describe the two types of fermentation and give an example of an organism that performs each. 1. Lactic acid – takes place in animals. Produces lactic acid from glucose. 2. Alcoholic – produces alcohol from glucose. Takes place in plants and yeast. 7. Draw cell with the organelle involved in cellular respiration. Show where glycolysis, the Krebs cycle, and the electron transport chain all occur. Indicate what goes in and comes out of each step. Page 7 V. Comparing Photosynthesis and Cellular Respiration: 8. How are NADPH (in photosynthesis) and NADH (in cellular respiration) similar? Both high energy electron carriers. 9. How are mitochondria and chloroplasts similar? Both deal with energy conversions. 10. Describe the role of ATP in photosynthesis vs. cellular respiration. PS- ATP is used to make glucose (food for plant). CR- ATP is usable energy used for cellular processes. 11. Copy the following and mark an “X” in the appropriate spaces (one, both, or neither): Photosynthesis Stores Energy as glucose Cellular Respiration X Releases Energy in glucose X Occurs in Living Cells X X Uses an Electron Transport Chain X X X- NADPH X- NADH & FADH2 X X Uses electron carrier molecules Occurs in Plant Cells Occurs in Animal Cells Releases Oxygen X X Releases Carbon Dioxide X Uses Oxygen X Page 8 Converts Creates Energy X energy X Water is released X Water is consumed The number of ATP produced is X (32) higher in Occurs during the day Occurs at night X X X (dark rxns) X VI. DNA Structure and Replication 1. Describe the experiments/major contributions of the following scientists: a. Griffith – transformation: gene from one cell was taken in by another cell b. Avery – repeated Griffith’s work: when DNA was destroyed transformation did not occur. c. Watson and Crick – made 3D model of DNA – double helix d. Rosalind Franklin – used Xray diffraction to predict the shape of DNA (helix) e. Chargaff – base pairing rules: A-T and G-C f. Hershey and Chase - used bacteriophages to prove DNA transmits genetic information. 2. What is the monomer of DNA? Nucleotide What are the 3 parts that make up this monomer? Deoxyribose sugar, phosphate, nitrogenous base (A,T,G,C) 3. What are the four nitrogenous bases in DNA? Adenine, Thymine, Guanine, Cytosine. 4. Explain the base paring rules of DNA. A-T and G-C 5. Which bases are purines? Adenine & Guanine Which are pyrimidines? Thymine & Cytosine 6. What type of bonds hold nitrogenous bases together? Hydrogen bonds 7. What is represented by the “rungs of the ladder” of DNA? Bases What is represented by the “backbone” of DNA? Sugar and phosphate. 8. Write the correct complementary sequence of the following. Draw and label deoxyribose, phosphate, hydrogen bonds, 3’ and 5’ ends to make a complete strand. 5’ A A T C G C G T T 3’ 3’ T T A G C G C A A 5’ 9. Where does DNA replication take place in eukaryotes? Nucleus Prokaryotes? Cytoplasm Page 9 10. What is the end result of DNA replication? 2 identical copies of DNA (each with one old and one new strand). 11. Describe the steps in DNA Replication. Be sure to include the following: a. Helicase d. Okazaki b. DNA fragments polymerase c. Ligase g. 5’ end h. 3’ end e. Leading strand i. Template f. Lagging strand strand Step 1: Helicase unwinds the DNA Step 2: DNA Polymerase adds one nucleotide at a time in the 3’ 5’ direction. Both strands act as a template. The strand that is assembled in a continuous motion is the leading strand. The strand that is assembled in a back stitch motion is a lagging strand and contain small fragments call Okazaki fragments. The gaps between the Okazaki fragments are closed by the enzyme ligase. Step 3: DNA Polymerase proofreads. 12. What is the direction of new strand elongation during replication? DNA polymerase “reads” in the 3’ 5’ direction. new strand elongates from 5’ 3’ 13. Describe how DNA replication “checks” itself. DNA polymerase proofreads the newly assembled DNA. VII. Protein Synthesis 1. Transcribe the following sequence: T G A C G G A C T T G G A A C T A A T A G T C C ACUGCCUGAACCUUGAUUAUCAGG a. What did you create after transcribing the sequence? RNA b. How many codons does the sequence have? 8 2. Where does transcription occur? Nucleus 3. Describe the function of RNA polymerase in transcription. Adds one nucleotide at a time 4. Describe IN DETAIL the process of transcription beginning with DNA and ending with mature RNA that will leave the nucleus. In the nucleus, RNA polymerase binds to the DNA and bring one nucleotide at a time to form the RNA strand. Before the RNA leaves the nucleus, it must be edited. Here, the INTRONS are removed and the EXONS are pieced together to make the mature RNA. 5. What do we get from transcription that is used in translation? RNA 6. Sketch each of the following and write its function. Page 10 a. mRNA – brings a coded message from the nucleus to the ribosome. Contains codons that code for specific amino acids. b. rRNA – makes up the ribosome c. tRNA – brings the amino acids to the ribosome to construct the protein. Contains anticodons. 7. What is a codon? Sequence of 3 bases found on the mRNA. It codes for specific amino acids. 8. Using the RNA from #1, write the sequence of amino acids that will be put together in translation. Thr – Ala – Stop – Thr – Leu – Ile – Ile – Arg a. What tool did you use to figure out the sequence of amino acids? Codon chart/wheel b. Describe how to use the Codon Wheel. First base is the inside, second base is the middle ring and the third base is the outside ring. 9. Where does translation occur? Ribosome 10. What is an anticodon? Sequence of 3 bases found on the tRNA. It “locates” the proper codon to bring the correct amino acid to the ribosome. 11. What is the “Genetic Code”? the rules by which genetic information is translated into proteins. (ex: ACU = Thr) 12. What is a polypeptide? Chain of amino acids = protein. 13. What is a peptide bond and where is it found? Bond that holds amino acids together. Found in a polypeptide. 14. What is a protein? What is its purpose? Protein is a chain of amino acids. It carries out cellular functions, acts as enzymes, etc. 15. Describe IN DETAIL the entire process of translation. The mRNA arrives at the ribosome. The codons (located on the mRNA) codes for a specific amino acid which is brought to the ribosome by the tRNA. The amino acids are added one at a time, creating peptide bonds between them. Once a stop codon is reached, the ribosome breaks apart and a polypeptide remains the carry out cellular functions. 16. Explain the terms protein synthesis and gene expression. Genes are translated into proteins so that the genes are then expressed. 17. What is a mutation? How are mutations caused? Mutation is a change/error in a gene. Mutations can be genetic or caused by environmental factors like radiation, etc. 18. Describe a point mutation. A point mutation is a mutation that changes one base in a DNA sequence. a. Transcribe the following DNA sequence: A T G C A C A C G C G T Page 11 UACGUGUGCGCA b. Re-write the DNA sequence, substituting the 3rd “A” for a “T”. Transcribe the mutated sequence. ATGCACTCGCGT UACGUGAGCGCA c. Translate the amino acid sequence of i. The original DNA sequence (a) Tyr – Val – Cys - Ala ii. The mutated DNA sequence (b) Tyr – Val – Ser – Ala d. Describe the difference between the amino acid sequences. One amino acid changed 19. Describe a frameshift mutation and the two types. Frameshift mutation is when every base following the mutation is affected. Ex: Deletion and Insertion Page 12