Genetically engineered anthocyanin pathway for high health-promoting pigment production in eggplant Yanjie Zhang1*, Guihua Chu1*, Zongli Hu1, Qiong Gao1, Baolu Cui1, Shibing Tian2, Bo Wang2, Guoping Chen1† 1 Bioengineering College, Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Chongqing University, Campus B, Room 515, 174 Shapingba Main Street, Chongqing 400044, People’s Republic of China; 2 The Institute of Vegetable Research,Chongqing Academy of Agricultural Sciences, 401329 Chongqing , People’s Republic of China; * † These authors contributed equally to this work. Corresponding author. Guoping Chen, Tel: 00862365112674; Fax: 0086 23 65112674; E-mail: chenguoping@cqu.edu.cn. Supplementary Table 1. primers used for qPCR analysis in transgenic and wild-type eggplants Genes Forward primer (5' to 3', top), Accession reverse primer (5' to 3', bottom) SmPAL TGCCTATGCTGATGATCCCT FS095735 GTTCCCACTTTCCAACGCTA SmCHS TCCATTACCAGAAGTCGAAAG FS083297 TTCCAATCAGAAATGCCTAA SmCHI AAATACAAAAGCCAGCATAACC FS057776 AGGGGAGTGTCACCTACAACTA SmF3H AATGCGATAGTGTATCCGTTAA FS038632 CAAGCAAGAATTTCCTCAATG SmF3'5'H CTCATCTAGCGTGATAGAATGG X70824 TTTAGTGGCGTTGAAGGGT SmDFR TTCATTTGCTCATCCCATC FS075550 GCCCCTTGATACATATCCTC SmANS GCACTGACTTTCATCCTCCAC EU809469 TCTTGTACTTTCCGTTGCTTAG SmUFGT CTGTGAACCAGATGATGGAAGT X77369 AAAAGAACCGATCACAAAGAT SmAN11 TCGGTATCTGCTGATGGGTC KF727473 TGTATCTCAAATCTTGCTTGTTCC SmbHLH1 CTTTGGAGACCAGAAGTTGATG KF727475 CTTGCTACCAGTTGGCAGAAT SmMYB1 CAAGTGACAAGCAAACTACCG KF727476 TCTTCTCCTTCAACAGCGTC SmGAPDH GTACGACAACGAATGGGGTTA TCATATCAGCAGCACCAGCA FS001574 Supplementary Figure 1. Fruit and flower phenotypes in T0 generation of transgenic eggplants containing SmMYB1 under the control of the 35S promoter. (A) Map of T-DNA region of the binary vector used for transformation. LB, left T-DNA border region; RB, right T-DNA border region; nptII gene conferring kanamycin resistance under the control of the nos promoter; Tnos, terminator region of nptII gene. (B) Phenotype of flower in wild-type eggplant, the picture at the top right corner indicates an enlargement of the selected region (framed by red circle). (C) Phenotype of flower in transgenic eggplant, the picture at the top right corner indicates an enlargement of the selected region (framed by red circle). (D) Phenotype of fruit in wild-type eggplant, (E) Phenotype of fruit in transgenic eggplant. Supplementary Figure 2. The MS/MS spectrum of candidate anthocyanins indicated in figure 3 A and Table 1. Figure A, B, C, D, E, F and G refers to characteristic fragmentations of peak1, 2, 3, 4, 5, 6 and 7 in the HPLC profiles and table 1 respectively. Supplementary Figure 3. Anthocyanin contents in the leaves, petals, stamens, fruit peels and flesh of WT and transgenic lines (A). (B) Expression analysis of SmMYB1 in the leaves, petals, stamens, fruit peels and flesh of WT and transgenic plants. WT: non-transformed plants. N、P and R indicate independent transgenic lines. The asterisks indicate significant difference (p<0.05) and extremely significant difference (p<0.01) separately between WT and transgenic lines. Supplementary Figure 4. Expression profiles of anthocyanin biosynthetic genes (A-H) in the leaves, petals, stamens, fruit peels and flesh of WT and transgenic lines. WT: non-transformed plants. N, P and R indicate independent transgenic lines. Values represent mean ± SD (n = 3). The asterisks indicate significant difference (p<0.05) and extremely significant difference (p<0.01) separately between WT and transgenic lines. Supplementary Figure 5. Expression profiles of anthocyanin biosynthesis regulatory genes in the leaves, petals, stamens, fruit peels and flesh of WT and transgenic plants. WT: non-transformed plants. N, P and R indicate independent transgenic lines. Values represent mean ± SD (n = 3). The asterisks indicate a significant difference (p<0.05) between WT and transgenic lines.