PUBLICATIONS
Peter C. Jordan
1. "The Lower Electronic Levels of the Radicals CH, CH2, CH3, NH, NH2, BH, BH2 and BH3," Mol. Phys.,
1962, 5, 121-138; with H. C. Longuet-Higgins.
2. "Lower Electronic Levels of the Radicals PH and PH2," J. Chem. Phys., 1964, 41, 1442-1449.
3. "Towards a Theory of Linear Nonequilibrium Statistical Mechanics, Ann. of Phys., 1965, 35, 96-163; with
M. Baur, J. R. Jordan and J. E. Mayer.
4. "Lower Electronic Levels of the Radicals SiH, SiH2 and SiH3," J. Chem. Phys., 1966, 44, 3400-3406.
5. "Non-Equilibrium Statistical Mechanics of a Multi-Component Fluid," J. Chem. Phys., 1966, 45, 2492-2507;
with J. R. Jordan.
6. "Upper Bounds for the Chemical Potential and the Self-Consistent Field," Phys. Rev., 1968, 169, 215-221;
with S. Golden.
7. "Intensities in Octahedral Complexes of 4d and 5d Transition Metal Ions," J. Chem. Phys., 1968, 49, 38583866; with H. H. Patterson and P. B. Dorain.
8. "The Optical Spectra of Os+4 in Single Cubic Crystals at 4.2 °K," J. Chem. Phys., 1968, 49, 3845-3857; with
P. B. Dorain and H. H. Patterson.
9. "Comments on the Theory of Self-Diffusion in Liquids," J. Chem. Phys., 1970, 53, 4355-4357; with A.
Greenberg.
10. "Application of the BBGKY Hierarchy to the Study of Self-Diffusion in Liquids", J. Chem Phys., 1972, 56,
2181-2188; with A. D. Greenberg.
11. "Association Phenomena in a Ferromagnetic Colloid," Mol. Phys., 1973, 25, 961-973.
12. "Theory of Self-diffusion in Liquids," Phys. Rev. A., 1974, 10, 319-322.
13. "Theory of Transport in Liquids. II. Viscosity," Phys. Rev. A, 1975, 12, 1638-1647; with R. E. Boehm.
14. "Field Dependent Chain Formation by Ferromagnetic Colloids," Mol. Phys., 1979, 38, 769-780.
15. "Kinetics of Transport of Hydrophobic Ions Through Lipid Bilayer Membranes Including Diffusion
Polarization in the Aqueous Phase," Biophys. Chem., 1979, 10, 273-287; with G. Stark.
16. "Current Noise in Transport of Hydrophobic Ions Through Lipid Bilayer Membranes Including Diffusion
Polarization in the Aqueous Phase," Biophys. Chem., 1980, 12, 1-11.
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17. "Energy Barriers for Passage of Ions Through Channels. Exact Solution of Two Electrostatic Problems,"
Biophys. Chem., 1981, 13, 203-212.
18. "A Laser-Temperature-Jump Method for the Study of the Rate of Transfer of Hydrophobic Ions and Carriers
Across the Interface of Thin Lipid Membranes," Biophys. Chem., 1981, 13, 329-348; with W. Brock and
G. Stark.
19. "Electrostatic Modeling of Ion Pores. Energy Barriers and Electric Field Profiles," Biophys. J., 1982, 39,
157-162.
20. "Electrostatic Modeling of Ion Pores. II. Effects Attributable to the Membrane Dipole Potential," Biophys.
J., 1983, 41, 189-195.
21. "Electrostatic Models of the Gramicidin and the Delayed Rectifier Potassium Channel," Biophys. J., 1984,
45, 100-102.
22. "The Total Electrostatic Potential in a Gramicidin Channel," J. Membrane Biol., 1984, 78, 91-102.
23. "The Effect of Pore Structure on Energy Barriers and Electric Field Profiles. I. Symmetrical Channels,"
Biophys. J., 1984, 45, 1091-1100.
24. "The Effect of Pore Structure on Energy Barriers and Electric Field Profiles. II. Unsymmetrical Channels,"
Biophys. J., 1984, 45, 1101-1107.
25. "Molecular Dynamics Simulation of Cation Motion in Water-filled Gramicidin-like Pores," Biophys. J.,
1984, 46, 805-819; with W. K. Lee.
26. "How Shortening a Channel May Lower its Conductance. The Case of Des Val7 -DVal8 - Gramicidin A",
Biochim. Biophys. Acta, 1985, 818, 416-420; with I. S. Vayl.
27. "Structures and Energetics of Monovalent Ion-Water Microclusters", J. Chem. Phys., 1986, 85, 4045-4051;
with S. S. Sung.
28. "How Pore Mouth Charge Distributions Alter the Permeability of Transmembrane Ionic Channels", Biophys.
J., 1987, 51, 297-311.
29. "Why is Gramicidin Valence Selective? A Theoretical Study", Biophys. J., 1987, 51, 661-672; with S. S.
Sung.
30. "Electrostatic Modeling of Ion Pores. Multipolar Sources", Biophys. Chem. 1987, 27, 7-13; with I. S. Vayl.
31. "The Interaction of Cl- with a Gramicidin-like Channel", Biophys. Chem., 1987, 27, 1-6; with S. S. Sung.
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32. "A Theoretical Study of Double Ion Occupancy in a Gramicidin-like Channel", J. Phys. Chem., 1988, 92,
2362-2366; with S. S. Sung.
33. "A Theoretical Study of the Anti-parallel Double Stranded Helical Dimer of Gramicidin as an Ion Channel",
Biophys. J., 1988, 54, 519-526; with S. S. Sung.
34. "Structures and Energetics of Monovalent Ion-Water Microclusters. II. Thermal Phenomena", J. Chem.
Phys., 1988, 89, 7492-7501; with S. Lin.
35. "The Effect of Electrolyte Shielding on the Electrical Potential in Transmembrane Ion Channels", Biophys.
J., 1989, 55, 1041-1052; with R. J. Bacquet, A. J. McCammon and P. Tran.
36. "Channel Properties of Potential Gramicidin Dimers", J. Theor. Biol., 1989, 140, 369-380; with S.-S. Sung.
37. "Ion-Water and Ion-Polypeptide Correlations in a Gramicidin-like Channel. A Molecular Dynamics Study,"
Biophys. J., 1990, 57, 1133-1156.
38. "Application of the Thermodynamic Cycle Perturbation Method to Systems with Non-additive Potentials," J.
Chem. Phys., 1990, 93, 2762-2768; with J. Wang.
39. "How does Vestibule Surface Charge affect Ion Conduction and Toxin Binding in a Sodium Channel,"
Biophys. J., 1990, 57, 883-891; with M. Cai
40. "A Dipolar Chain Model for the Electrostatics of Transmembrane Ion Channels," Chem. Phys., 1991, 153,
125-131; with M.B. Partenskii and M. Cai.
41. "Influence of Pore-Former Charge Distributions on the Electrostatic Properties of Dipolar Water Chains in
Transmembrane Ion Channels," Electrochem. Acta, 1991, 36, 1753-1756; with M.B. Partenskii and M. Cai.
42. "Polarizability Effects in a Four-Charge Model for Water," J. Chem. Phys., 1992, 96, 3120-3130; with R.E.
Kozack.
43. "Empirical Models for the Hydration of Protons," J. Chem. Phys., 1992, 96, 3131-3136; with R.E. Kozack.
44. "Nonlinear Dielectric Behavior of Water in Transmembrane Ion Channels: Ion Energy Barriers and the
Channel Dielectric Constant," J. Phys. Chem., 1992, 96, 3906-3910; with M.B. Partenskii.
45. "The Admissable Sign of the Differential Capacity. Instabilities and Phase Transitions at Electrified
Interfaces," J. Chem. Phys., 1993, 99, 2992-3002; with M.B. Partenskii
46. "Structure of H+(H2O)n Clusters near the Magic Number n=21," J. Chem. Phys., 1993, 99, 2978-2984; with
R.E. Kozack.
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47. "Influence of a Channel Forming Peptide on Energy Barriers to Ion Permeation, Viewed from a Continuum
Dielectric Perspective," Biophys. J., 1994, 67, 1429-1438; with V. Dorman and M.B. Partenskii.
48. "Extended Dipolar Chain Model for Ion Channels. Electrostriction Effects and the Translational Energy
Barrier," Biophys. J., 1995, 68, 427-433; with V. Dorman, M. Partenskii and M. Sancho.
49. "Towards Phase Transferable Potential Functions. Methodology and Application to Nitrogen," J. Chem.
Phys., 1995, 103, 2272-2285; with H.J.C. Berendsen, J. Mavri, P.J. van Maaren and D. van der Spoel.
50. "A semi-microscopic Monte Carlo study of permeation energetics in a gramicidinlike channel. The origin of
cation selectivity," Biophys. J. 1996, 70, 121-134; with V. Dorman and M.B. Partenskii.
51. "Density functional approach to non-uniformly charged membrane/solvent interfaces," Physica A, 1996, 231,
324-329; with W.J. Ellis and M.B. Partenskii.
52. "Ion-water and water-water interactions in a gramicidinlike channel: Effects due to group polarizability and
backbone flexibility," Biophys. Chem., 1997, 65, 123-141; with K.A. Duca.
53. "Non-local approach to membrane stability under electrical stress " in Biomedical Sensing and Imaging
Technologies, R.A. Lieberman, T.Vo-Dinh, Eds. Proceedings of SPIE., 3253, 266-279 (1998); with M.B.
Partenskii and V.L. Dorman
54. “Comparison of Selectively Polarizable Force Fields for Ion-Water-Peptide Interactions: Ion
Translocation in a Gramicidinlike Channel,” J. Phys. Chem. B, 1998, 102, 9127-9138; with K.A. Duca.
55. "Membrane stability under electrical stress. A non-local electroelastic treatment," J. Chem. Phys., 1998, 109,
10361-10371; with M.B. Partenskii and V.L. Dorman.
56. "Unusual distributed charge models of water’s electric potential," Chem. Phys., 1999, 246, 37-47; with S.
Tanizaki, H. Partridge and J. Mavri
57. "Membrane capacitance: A non-local electroelastic treatment," Mol. Phys., 2000, 98:193-200; with M.B.
Partenskii.
58. "Ion permeation and chemical kinetics," J. Gen. Physiol., 1999, 114:601-603.
59. "Membrane deformation and the elastic energy of insertion: Perturbation of membrane elastic constants due
to peptide insertion" J. Chem. Phys. , 2002, 117:10768-10776; with M. B. Partenskii
60. "Unclogging a pipe: Potassium channel pinball" Biophys. J., 2002, 83: 2-4.
61. "Trial by ordeal: Ionic free energies in gramicidin" Biophys. J., 2002, 83: 1235-1236.
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62. "Ion-water interaction potentials in the semi-microscopic model" J. Chem. Phys., 2003, 118:1333-1340; with
V. L. Dorman
63. "Modeling permeation energetics in the KcsA potassium channel" Biophys. J. 2003, 84:2814-2830; with
S. Garofoli
64. "Stabilization of ion channels due to membrane-mediated elastic interaction" J. Chem. Phys. 2003,
118:10306-10311; with G. V. Miloshevsky and M. B. Partenskii
65. "Gating gramicidin channels in lipid bilayers: Reaction coordinates and the mechanism of dissociation"
Biophys. J. 2004, 86:92-104; with G. V. Miloshevsky
66. "Membrane inclusions as coupled harmonic oscillators: Effects due to anisotropic membrane slope
relaxation" J. Chem. Phys. 2004, 120:7183-7193; with G. V. Miloshevsky and M. B. Partenskii
67. "Anion pathway and potential energy profiles along curvilinear bacterial ClC Cl- pores: Electrostatic
effects of charged residues" Biophys. J. 2004, 86:825-835; with G. V. Miloshevsky
68. "Ionic permeation free energy in gramicidin: A semi-microscopic perspective" Biophys. J 2004, 86:35293541; with V. L. Dorman
69. "Water and ion permeation in bAQP1 and GlpF channels: A kinetic Monte Carlo study" Biophys. J 2004,
87:3690-3702; with G. V. Miloshevsky
70. "Negative capacitance and instability at electrified interfaces: Lessons from the study of membrane
capacitance" Condensed Matter Physics 2005, 8:397-412; with M. B. Partenskii
71. "Negative capacitance and related instabilities in theoretical models of the electric double layer and
membrane capacitors" ArXiv.Physics 2005, 0412183 (23 pages); with M. B. Partenskii
72. "Permeation and Gating in Proteins: kinetic Monte Carlo Reaction Path Following", J. Chem. Phys. 2005,
122:214901 (7 pages); with G. V. Miloshevsky
73. "Application of Finite Difference Methods to Membrane-Mediated Protein Interactions and to Heat and
Magnetic Field Diffusion in Plasmas", J. Comp. Phys. in press; with G. V. Miloshevsky, V. A. Sizyuk, M. B.
Partenskii, A. Hassanein
INVITED PAPERS
1. "On the Interpretation of the Optical Spectra of Hexahalogen Complexes of 4d and 5d Transition Metal
Ions," Acc. Chem. Res., 1974, 7, 202-208.
2. "Relaxation Studies of Ion Transport Systems in Lipid Bilayer Membranes," Quart. Rev. Biophys., 1981, 14,
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513-598; with P. Läuger, R. Benz, G. Stark, E. Bamberg, A. Fahr and W. Brock.
3. "Ion Channel Electrostatics and the Shape of Channel Proteins," in Ion Channel Reconstitution; C. Miller,
Ed.; Plenum: New York, 1986, 37-55.
4. "Ion Transport through Transmembrane Channels: Ab Initio Perspectives," in Molecular Biology of Ion
Channels; W. S. Agnew, T. Claudio, F. J. Sigworth, Eds.; Academic Press, New York, 1988, 91-111.
5. "Microscopic Approaches to Ion Transport through Transmembrane Channels. The Model System
Gramicidin", J. Phys. Chem., 1987, 91, 6582-6591 (Feature article).
6. "A Molecular Dynamics Study of Cesium Ion Motion in a Gramicidinlike Channel. Structural and Energetic
Implications," in Transport through Membranes: Carriers, Channels and Pumps; A. Pullman, J. Jortner and B.
Pullman, Eds.; Kluwer Academic Publishers, Dordrecht, Netherlands, 1988, 237-251.
7. "Interaction of Ions with Membrane Proteins," in Thermodynamics of Membrane Receptors and Channels;
M. Jackson, ed.; CRC Press, Inc., Boca Raton, FL, 1993, 27-80.
8. "Theoretical Perspective on Ion-channel Electrostatics. Continuum and Microscopic Approaches," Quart.
Rev. Biophys., 1992, 91, 477-510; with M.B. Partenskii.
9. "Electrostatic influences on ion-water correlations in ion channels," in Prog. Cell Res., Sokabe, M.,
Auerbach, A., Sigworth, F., 1997, 6, 279-293 with M.B. Partenskii and V. Dorman.
10. "The question of negative capacitance and its relation to instabilities and phase transitions at electrified
interfaces," Int. Revs. Phys. Chem., 1996, 15, 153-182; with M.B. Partenskii and V.L. Dorman.
11. "Ionic interactions in multiply occupied channels, " in Gramicidin and related ion-channel forming peptides;
Novartis Found Symp 225, Wiley, Chichester, 1999, 153-169; with V.L. Dorman and S. Garofoli
12. "Ionic energetics in narrow channels," in Proceedings of the IMA Workshop on Membrane Transport and
Renal Physiology, H. E. Layton & A. M. Weinstein, ed.; Springer-Verlag, 2002, 1-25
13. “Electroelastic instabilities in double layers and membranes,” in Liquid Interfaces in Chemical,
Biological, and Pharmaceutical Applications, A.G. Volkov, ed.; Marcel Dekker, 2000, 51-82; with M.B.
Partenskii
14. “Permeation energetics in a model potassium channel,” in Ion channels-from atomic resolution to
functional genomics; Novartis Found Symp 245, Wiley, Chichester, 2002, 109-121; with S. Garofoli, G.
Miloshevsky and V.L. Dorman
15. “Energetics and gating of narrow ionic channels: The influence of channel architecture and lipid-channel
interactions,” in Interfacial Catalysis, A.G. Volkov, ed.; Marcel Dekker, 2003, 493-534; with G.
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Miloshevsky and M.B. Partenskii
16. “Permeation in ion channels. The interplay of structure and theory,” Trends in Neurosciences, 2004,
27:308-314; with G. V. Miloshevsky
17. “Fifty Years of Progress in Ion Channel Research,” IEEE Transactions on Nanobioscience, 2005, 4:3-9
18. “Semi-Microscopic Modeling of Permeation Energetics,” IEEE Transactions on Nanobioscience, 2005,
4:94-101
BOOK
1.
"Chemical Kinetics and Transport," Plenum: New York, N.Y., 1979, pp 1-368.