22 April 2002 Chemical Physics Letters 356 (2002) 347–354 www.elsevier.com/locate/cplett The primary photoreaction of photoactive yellow protein (PYP): anisotropy changes and excitation wavelength dependence T. Gensch a,c , C.C. Gradinaru b,d, I.H.M. van Stokkum b, J. Hendriks c, K.J. Hellingwerf c, R. van Grondelle b,* a Institute for Biological Information Processing 1 (IBI-1), Research Centre J€ulich, D-52425 J€ulich Germany Department of Physics and Astronomy, Faculty of Sciences, Institute of Molecular Biological Sciences, Vrije Universiteit, De Boelelaan 1081, NL-1081 HV Amsterdam, Netherlands c SILS, Department of Chemistry, University of Amsterdam, Nieuwe Achtergracht 166, 1018 WV Amsterdam, Netherlands d Department of Biophysics, Leiden University, 2333 CA, Leiden, Netherlands b Received 1 February 2002; in final form 26 February 2002 Abstract The absorption and stimulated emission changes in the first 535 ps of the PYP photocycle can be described by four life times of 0.7, 6.3, and 220 ps and long lived. Two intermediates, I0 and Iz0 , were identified. We did not obtain indications for a significant excitation wavelength dependent primary photochemistry as found in low temperature absorption spectroscopy. The anisotropy of the primary photoproduct I0 and its successor Iz0 amounts to 0.3 – significantly lower than that of the bleached ground state (0.4). This distinctive change of the transition dipole moment orientation in the product state (24°) reflects changes of the chromophore geometry and electron density distribution caused by the photoisomerisation. Ó 2002 Published by Elsevier Science B.V. 1. Introduction The photoactive yellow protein (PYP) from the eubacterium Halorhodospira halophila (formerly Ectothiorhodospira halophila [1]) is the photoreceptor for a negative phototactic (photophobic) response of this photosynthetic organism induced by blue light [2]. It belongs to a family of blue light * Corresponding author. Fax: +31-20-444-7999. E-mail address: rienk@nat.vu.nl (R. van Grondelle). photoreceptors – the xanthopsins – found in several other photosynthetic bacteria [3–5]. After absorption of a blue photon PYP starts a cyclic photoreaction with several intermediates and finally forms a long-living state, pB355 . Since the pB355 state differs substantially from the ground state (pG446 ) [6–14], it is supposed that this difference is detected by the organism and leads to a signal for the flagella. Apart from the blue-shifted pB355 state, the photocycle of PYP consists of a number of earlier intermediates. Ultrafast transient absorption 0009-2614/02/$ - see front matter Ó 2002 Published by Elsevier Science B.V. PII: S 0 0 0 9 - 2 6 1 4 ( 0 2 ) 0 0 3 4 4 - 5 348 T. Gensch et al. / Chemical Physics Letters 356 (2002) 347–354 spectroscopy studies indicated the existence of a primary intermediate with red-shifted absorption I0 ðPYPB Þ after a few picoseconds [15–18]. The existence of yet another intermediate with redshifted absorption spectrum ðIz0 Þ similar to I0 is still debated. A red-shifted state, pR460 [6,19] is formed in a few nanoseconds [16,18]. Recently, a branching in the early photochemistry of PYP was suggested with two primary photointermediates involved – one red ðI0 ð¼ PYPB ÞÞ and one blue shifted ðPYPH Þ – and both leading to pR460 [18]. A multiexponential decay of the PYP fluorescence has been observed [20–22] with major components of 700 fs and 4 ps, which sets the time frame for the primary photoreaction event to the first 10 ps after excitation. Interestingly, in the free p-coumaric acid chromophore the trans–cis photoisomerisation occurs monoexponentially and without an intermediate state involved on a time scale 10 times slower than the fastest process observed for wt-PYP [22,23]. The ultrafast photoisomerisation – also found in other photoreceptors (visual rhodopsins, phytochromes, sensory rhodopsins) as the primary step – may give rise to a change in the direction of the transition dipole moment of the chromophore in the photoproduct compared to that of the ground state. Anisotropy measurements are sensitive to such dipole moment reorientations. Haran et al. [24] observed in bovine rhodopsin very fast (<10 fs) anisotropy changes and the formation of bathorhodopsin with an anisotropy of 0.34, which is significantly lower than 0.4 (the expected value for parallel dipole orientations of rhodopsin and bathorhodopsin). This result was in agreement with the time of the photoisomerisation (<1 ps for rhodopsin) obtained in other studies and has proven the ability of (absorption) anisotropy measurements to reveal structural rearrangements during ultrafast photoisomerisation reactions. 2. Experimental 2.1. Sample preparation PYP was prepared as described [14]. It was used without removal of its poly-histidine tail. The concentration of PYP in the different experiments was 220 lM. A total sample volume of 4–5 ml was loaded into a flow system and circulated by means of a peristaltic pump (Watson Marlow 313S) with a speed of 5–7:5 ml min1 . The cuvette for optical detection was a flow-through quartz cuvette with 1 mm pathlength (5 mm high). The sample had an OD of 1, 0.39, and 0.075 at 446, 400, and 485 nm, respectively. The sample was exchanged after measurement times of about 12 h. No changes in the steady state absorption spectrum were observed when comparing spectra obtained before and after measurements. 2.2. Femtosecond transient absorption spectroscopy Transient absorption spectra were recorded on a home-built femtosecond spectrometer described in [25]. For excitation on the red flank of the pG446 absorption, the non-collinear optical parametric amplifier output was tuned to 485 nm (with a FWHM of 12 nm) and a pulse energy of ca. 200 nJ. The duration of the pulse was ca. 60 fs FWHM. For 400 nm excitation, we used a small fraction of the frequency doubled output from the regenerative amplifier (150 nJ). A part of the amplifier output is sent through a variable delay line (minimal steps of 0:1 lm) and subsequently focused on a sapphire plate in order to generate a white light continuum as probe light. This light is split into two almost identical beams (signal and reference). All three beams, i.e. pump, signal and reference are focused to a spotsize of 120 lm. For 485 nm the frequency was set to 1 kHz, while this was lowered to 100 Hz for the 400 nm pump, to prevent excitation of pB355 produced in the preceding pulse. This assured that virtually all PYP molecules in the excitation volume were in the pG446 state before excitation. The polarisation of the pump beam was set to parallel, magic angle and perpendicular relative to that of the probe beam, by using a Berek prism compensator (New Focus 5540). The spectral detection window for PYP was set to 430–580 nm. Typically, 5000 spectra were recorded for each time delay, and 250 delays were sampled up to 535 ps, which was the largest delay achievable. The T. Gensch et al. / Chemical Physics Letters 356 (2002) 347–354 maximal change in the transmission of the sample was 100 mOD, and the noise level was around 1 mOD. The used excitation area and pump energies resulted in photon densities of 2.7 1015 ðkexc ¼ 400 nmÞ and 4:3 1015 photons cm2 per pulse ðkexc ¼ 485 nmÞ. However, these relatively high photon densities lead only to excited state populations of 8% ðkexc ¼ 400 nmÞ and 2 % ðkexc ¼ 485 nmÞ, because of the relatively low absorption coefficient of PYP (7:5 1017 cm2 at 446 nm) and the choice of pump wavelengths on the blue and red side of the absorption maximum. The experiments were performed in the linear excitation regime. 2.3. Data analysis The time-gated spectra were analysed with a global fitting program described elsewhere [25,26] from which one obtains life times and decay associated difference spectra (DADS). The instrument response function, fitted with a Gaussian profile, had a FWHM of ca. 100 fs, and the probe pulse dispersion was described with a third order polynomial function of the wavelength. The dispersion parameters agree well with the ones measured in a series of experiments performed under similar conditions [25,27]. With 400 nm excitation, difference absorption spectra recorded under parallel and perpendicular polarisation orientations of the probe relative to the pump light were fitted by target analysis [28,29]. Using a kinetic model the (magic angle) time dependence of the concentration of each state was calculated. For each state bleach, stimulated emission and absorption can possess their own anisotropy r. The anisotropies are assumed to be time independent on the 500 ps time scale. The model function for parallel data is the sum of the magic angle concentrations multiplied by ð1 þ 2rÞ and by the species associated difference spectrum (SADS) for each contribution. Likewise, for perpendicular data the anisotropy factor is ð1 rÞ. In order to estimate all unknown parameters (rate constants, spectra and anisotropies) spectral constraints are necessary, which are explained in the text. 349 3. Results and discussion 3.1. Transient absorption with excitation at 400 nm Immediately after the excitation pulse negative signals are detected at all observation wavelengths, reflecting strong ground state bleaching and stimulated emission signal contributions. At later times, ground state bleaching below 470 nm, stimulated emission above 460 nm and product formation around 500 nm are identified. Fig. 1 shows the time-course of these processes at suitable wavelengths. At 452 nm the ground state bleaching is probed, whereas at 471 nm a fast decay of the stimulated emission is observed. In the 492 and 506 nm traces the stimulated emission decays more slowly, and product formation occurs – as seen at times later than 6 ps. A product state transition is present on the long ps time scale. At 471 nm the initial negative signal approaches zero at about 4 ps and stays near zero for the next 530 ps. In other words, this wavelength is the isosbestic point between the ground state and the primary photoproduct. Three exponential decays with life times of 0.8, 8 and 900 ps were sufficient to describe the kinetics of the absorption and stimulated emission changes. It was not possible to reliably estimate a fourth life time. The longest life time is uncertain due to an incomplete overlap with the observation time window. The decay associated difference spectra (DADS) are depicted in Fig. 2a. The first two components (dotted and dashed) are dominated by bleach recovery and stimulated emission decay, and by the formation of the primary product in the region 480–560 nm. The multiexponential stimulated emission decay and the differences in spectral shape of the DADS (extrema of first and second DADS are at 480 and 500 nm, respectively) point towards two different excited states ES1 and ES2. The slowest component shows absorption decrease and increase in the product region (centered at 500 nm) and the bleach region, respectively. The latter could be product relaxation back to the ground state as well as formation of a new product with blueshifted absorption relative to the primary product (see also Section 3.3). The formation of pR460 was 350 T. Gensch et al. / Chemical Physics Letters 356 (2002) 347–354 Fig. 2. DADS estimated from global analysis with three life times. Key: life times (respectively dotted, dashed, solid): 0.8, 8 and 900 ps (a, 400 nm excitation) and 1.5, 11 and 800 ps (b, 485 nm excitation). The vertical axis unit is mOD. study on the free deprotonated p-coumaric acid chromophore [23]. 3.2. Transient absorption with excitation at 485 nm Fig. 1. Magic angle transient absorption data (solid) and model fits (dashed) observed at 452, 471, 492 and 506 nm after excitation with 400 nm light. The bottom trace was observed at 506 nm after excitation at 485 nm, and shows a small remainder of a coherent artefact. Note that the time axis is linear from )5 to 5 ps, and logarithmic from 5 to 500 ps. The vertical axis unit is mOD. not observable due to the observation time window of 535 ps compared to the formation time of 3 ns [16,18]. The small but significant difference of the second and third DADS in the bleach region indicates a contribution of excited state absorption around 450–470 nm blue-shifted to the stimulated emission. A similar excited state absorption has been found in a transient absorption Several low temperature experiments revealed a more complicated, branched photocycle of PYP before the formation of pR460 [30–33]. Imamoto et al. report a distinct excitation wavelength dependence of the relative efficiency of formation of the two primary photoproducts, PYPB ð¼ I0 Þ and PYPH when using cw illumination. At excitation wavelengths larger than 460 nm significantly less PYPB ð¼ I0 Þ is formed, while for excitation below 460 nm a nearly constant concentration ratio is obtained. We tested the possibility that the primary photochemistry is excitation wavelength dependent by comparing the data with excitation at 400 and 485 nm. For the latter, the signal was not reliable at observation wavelengths below 470 nm due to the four times lower excited state population compared to that with 400 nm excitation and the low intensity of the probe light below 470 nm. As a consequence a crucial part for the analysis of the absorption difference spectra – namely the T. Gensch et al. / Chemical Physics Letters 356 (2002) 347–354 ground state bleach region – could not be recorded. Three exponential decays with life times of 1.5, 11 and 800 ps are sufficient to describe the data. The existence of two excited states can be concluded from the biexponential decay of the stimulated emission. In Fig. 2b the DADS are plotted. The spectral shapes and the extrema of the DADS are similar to that for excitation at 400 nm, only the early stimulated emission (dotted) shows less intensity below 500 and above 540 nm. By comparing these DADS we infer that the quantum yield of the formation of the red-shifted intermediate is similar or somewhat smaller for 485 nm excitation. The only significant difference in the experiments at the two excitation wavelengths is the somewhat slower kinetics of the primary photochemistry. The first two life times are larger for the 485 nm excitation by factors of, respectively, 1.9 and 1.4. This can be seen by comparing the traces in the product absorption range at 506 nm (Fig. 1). The zero crossing point, which is found at 6 ps for excitation at 400 nm, shifts to 12 ps for excitation at 485 nm. On the basis of our experiments, we can exclude a change in the primary photochemistry for excitation in the red edge of the ground state absorption spectrum. Instead, the excitation wavelength dependence at low temperatures has to be explained by photobackreactions from PYPB and PYPH to the ground state and the development of photoequilibria. Whether the branching in the early photocycle is also present at room temperature remains to be proven. With the exception of the data presented in Imamoto et al. at 4 ns [18] no evidence for such behaviour has been found. The similar quantum yield of I0 formation for excitation at 485 and 400 nm is an important result with respect to a recently published time-resolved structure analysis by Laue X-ray diffraction on PYP crystals [34]. In this study, which revealed a number of important molecular motions during the PYP photocycle, an excitation wavelength of 495 nm was used. From our study it seems clear that the photochemistry is most probably similar in the first 535 ps to that for excitation near the PYP absorption maximum, although small differences in the reaction rates exist. Most likely, I0 is also produced with excitation at 495 nm. 351 3.3. Time-resolved anisotropy with excitation at 400 nm The data set measured with excitation at 400 nm included observation with parallel, perpendicular and magic angle polarisation conditions. It therefore allows us to determine the anisotropy of the PYP primary photoreaction in a time-resolved manner. In Figs. 3a–c the time course of traces with parallel and perpendicular polarisation in the bleach and stimulated emission as well as product region are shown. While the bleach region shows a constant limiting anisotropy of the expected 0.4, the product formed within 6 ps is characterised by a lower anisotropy. This behaviour is exemplified in Fig. 3d, where the difference absorption spectra at 80 ps with parallel and perpendicular orientation of probe and pump beam polarisation are shown. The inset depicts the anisotropy calculated from the raw data with values around 0.4 and 0.3 in the bleach and product regions, respectively. A target analysis including two excited states (ES1, ES2) and two product states ðI0 , Iz0 Þ was performed assuming the kinetic scheme ES1 ! GS (ground state, 40%), ES1 ! ES2 (35%), ES2 ! GS (100%) and ES1 ! I0 ! Iz0 (25% and 52%, respectively). Spectral constraints were imposed, namely that the bleach parts of the difference spectra of I0 and Iz0 are identical, and that these products do not absorb below 468 nm. The life times of ES1, ES2, and I0 , were then found to be 0.7 and 6.3, and 220 ps. The anisotropy of the ES1 species was fixed at 0.4, as was the anisotropy of the bleach part of the difference spectra of ES2, I0 and Iz0 . Then, the anisotropy of the stimulated emission of ES2 was 0.33, while the anisotropy of the absorption of I0 and Iz0 was 0.30 and 0.31. The estimated relative errors in all parameters are 10%, except for the life time of I0 ð220 50 psÞ. As seen in Figs. 3a–e with this model the data are well fitted for all 500 difference spectra in the complete time window. The anisotropy values of I0 (0.30) and Iz0 (0.31) are significantly lower than that of the ground state (0.4) which we attribute to the isomerisation reaction (see below). We have no explanation for the low anisotropy of ES2. The first two life times obtained in the target analysis compare well with that from a simple 352 T. Gensch et al. / Chemical Physics Letters 356 (2002) 347–354 Fig. 3. Anisotropy data (solid) and model fits (dashed). (a)–(c) Traces at 452 nm (ground state bleach), 477 nm (stimulated emission and formation of Iz0 ) and 492 nm (stimulated emission and formation and decay of I0 ). Estimated life times 0.7, 6.3, and 220 ps and long lived. (d) and (e) Difference spectra at 80 (mainly I0 ) and 535 ps (mainly Iz0 ). For all plots, the parallel data ðkÞ has the largest absolute magnitude and perpendicular the least. Note that the time axis in (a)–(c) is linear from )5 to 5 ps, and logarithmic from 5 to 500 ps. The inset in (d) and (e) depicts the anisotropy calculated from the raw data (solid) and fit (dashed). (f) SADS resulting from target analysis. Key: dot–dashed ES1, dotted ES2, dashed I0 , solid Iz0 . The vertical axis unit is mOD. three exponential fit. The spectral assumptions of the target analysis enable to resolve the 220 ps from the 900 ps life time found with global analysis of the magic angle data. The results obtained from the target analysis – besides delivering quantitative information like SADS and species anisotropy – are also more reliable, since the target analysis uses constraints known about the underlying physical processes. The observation of a near 200 ps component is in agreement with Ujj et al. [16]. The SADS of the primary photoproduct I0 agrees well with that obtained by Ujj et al. [16]. Their spectrum of Iz0 (lower absorption and slightly blue-shifted compared to I0 ), however, looks different from the one obtained here, where the absorption of Iz0 is also blue-shifted but the extinction coefficient is two times larger than I0 . The latter reflects the low efficiency (52%) of the I0 ! Iz0 transformation, which is visualised by the almost two times smaller bleach signal at 535 ps (mainly Iz0 ) compared to that at 80 ps (mainly I0 ) (Figs. 3d and e). This also is the reason for the bleach recovery observed in the 452 nm trace and the decay of absorption in the 492 and 506 nm magic angle traces in Fig. 1 in the long ps time range. The absorption in the product region decreases, although a product ðIz0 Þ with increased absorption is formed, but with a smaller concentration. An additional indication for the larger absorption of Iz0 is the blue shift of the zero crossing point in the absorption difference spectra at 80 ps (474 nm) and at 535 ps (472 nm) (Figs. 3d and e).The different Iz0 spectrum of Ujj et al. [16] arises from their assumption that the I0 ! Iz0 occurs with a quantum yield of 1. T. Gensch et al. / Chemical Physics Letters 356 (2002) 347–354 The anisotropy values can be related to a change of the transition dipole moment of the new state compared to the ground state. The decreased anisotropy value of I0 (0.30) reflects a change in the orientation of the transition dipole moment of b ¼ 24° relative to that of pG446 (calculated from r ¼ 2=5 ð3 cos2 b 1Þ=2). The most obvious event causing this change is the photoisomerisation of the PYP chromophore. Transient absorption studies on mutants [35], structures of early intermediates from X-ray diffraction crystallography [34] and a recent low temperature FTIR study [33] all give experimental evidence that the isomerisation is the first step in the photoreaction. The crystallographic studies have also identified more details of the isomerisation which is a double isomerisation around the double bond and an adjacent single bond flipping of the carbonyl group into a hydrophobic pocket while leaving the phenol part of the chromophore rather fixed. Similarly large and even 10-fold faster anisotropy changes have been observed in a single wavelength transient absorption anisotropy study on rhodopsin [24]. In the latter study a similar decreased anisotropy (0.34 corresponding to a change of 16°) was measured for bathorhodopsin, the fully isomerised photoproduct of rhodopsin which reflects the nuclear motion due to isomerisation. In addition they detected an even lower anisotropy value at 50 fs (0.25 corresponding to 30 °) which was interpreted as sudden redistributions of charges on the retinal chromophore of rhodopsin accompanying excitation. Analogous processes are not detected for PYP. 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