SIRELINE VARIATION IN NEONATAL LAMB COLD TOLERANCE A thesis submitted in partial fulfilment of the requirements for the Degree of Master of Science At Lincoln University by B.W. Gudex Lincoln University 2001 Abstract of a thesis submitted in partial fulfilment of the requirements for the Degree of Master of Science SIRE-LINE VARIATION IN NEONATAL LAMB COLD TOLERANCE. By B.W. Gudex T h e c o s t o f l a mb m o r t al i t y ca u s e d b y c o l d e x p os u r e h a s be e n e s t i ma t e d a t a p p r o xi ma t e l y 4 0 mi l l i o n dol l ar s p e r y e a r . T h i s v a l u e i s probably conservative as it does not include the cost due to the r e d u c t i o n i n p r o d u c t i v i t y i n h y p o t h er mi c l a mbs t h a t ma n a g e t o survive or the cost of reduced selec t i o n p o t e n t i a l o f t h i s r e s e a r c h w a s t o i n v e st i g a t e w h e t h e r s i r e - l i n e v ar i a t i o n e x i s t s i n n e o n a t a l l a mb c o l d t o l e r a n c e a n d w h e t h e r p o l y mor p h i s m i n t h e 3 a d r e n e r g i c r e c e pt o r ge n e c a n be u s e d a s a g e n e t i c ma r k e t f o r l a mb c o l d t o l e r a n c e a n d l e a n m u s c l e g r o w t h . T h e i n f l u e n c e o f t h e c l i ma t e , b i r t h w e i g h t , a g e o f d a m a t l am b i n g , g e n d e r a n d b i r t h r a n k o n n e o n a t a l l a mb c o l d t o l e r a n c e w a s a l s o a n a l y s e d . N e o n a t a l l a mb mor t a l i t y d u e t o s ol d e x pos u r e w a s a n a l y s e d i n four field trials that used neon a t a l l a m b mo r a l i t y fr o m c o l d e x p o s u r e a s a p r e d i c t o r o f n e o n a t a l lamb cold tolerance. Sire-line v a r i a t i o n i n n e o n a t a l l a mb m o r a li t y w as o b s e r v ed i n a l l t ri a l s , though it appeared that this effect was largely mediated through s i r e - l i n e v a r i a t i o n i n l a mb b i r t h w e i g h t . V a r i a t i o n i n l a mb b i r t h weight between birth rank clas s e d w a s a l s o f o u n d t o b e responsible for the influence of birth rank on neonatal lamb m o r t a l i t y d u e t o c o l d e x p o s u r e . T h e a g e o f d a m a t l a mb i n g a n d t h e l a mb g e n d e r w a s n o t o b s e r v e d t o i n fl u e nc e n e o n a t a l l a mb m o r t al i t y due to cold exposure. T h e s i r e s f r o m t h e c o l d t o l e r an c e s t u d y a n d t h e p r o g e n y o f t h e l e a n mu s c l e g r o w t h s t u d y w e r e g e n o t y p e d f o r t h e 3 a d r e ne r g i c r e c e pt o r l o c u s . O t h e r s t u di e s h a v e f o u n d e v i d e nc e t h a t a ma j o r g e n e e x i s t s i n t h e c a t e c h o l a mi n e s t i mu l a t i o n o f b r o w n a d i p o s e t h e r mo g e n e s i s a n d e v i d e n c e t h a t t h e 3 - A R g e n e i s a l i k e l y candidate. However, this hypot h e s i s a n d t h e h y po t h e s i s t h a t p o l y mo r p h i s m i n t h e 3 - A R g e n e i s a l s o l i n k e d t o l e a n mu s c l e g r o w t h i n l a mb s w a s n o t c o n f i r me d i n t h i s s t u d y . S o w h i l e i t a p p e a r s t h a t t h e r e s u l t s w e r e c o n f o u n d e d b y e x p e r i me n t a l d e s i g n , t h e r e i s e v i d e n c e t h a t i n f l u e nc e o f p o l y mo r p h i s m i n t h e o v i n e 3 AR g e n e o n ne o n a t al l am b mor t a l i t y a n d/ o r l e a n mus c l e g r o w t h i s n o t s u f f i c i e n t t o b e c o ns i d e r e d a ma j o r g e n e e f f e c t . T h e i mp l i c a t i o n s o f t h i s e x p er i me n t o n t h e s h e e p i n d u s t r y a n d s h e e p f a r me r s i n g e n e r a l a r e h u g e . W h i l e c o mp l e t e l y e l i mi n a t i n g l a mb d e a t h s d u e t o i n a d e q u a t e c o l d t ol e r a n c e i s i mp o s s i b l e , t h i s s t u d y s h o w s t h a t l a r g e g a i n s i n l amb s u r v i v a l c o u l d b e p o s s i b l e through selective breeding. Key Words: Sheep (Ovis aries), cold tolerance, lean muscle growth, birthweight, 3 adrenergic receptor SIRE LINE VARIATION IN NEONATAL LAMB COLD TOLERANCE Contents PAGE A b s t r a ct ii Contents iii List of Tables v List of Figures vi Chapter 1 REVIEW OF THE LITERATURE 1 Chapter 2 SIRELINE VARIATION IN NEONAT AL LAMB COLD MORTALITY 23 2.1 Flocks Investigated & Lambing Locations 24 2.2 Methods 25 2.3 Results 29 2.4 Discussion 35 2.5 Conclusions 43 Chapter 3 THE ROLE OF 3 ADRE NE RGIC RECEPT OR GE NE POLYM ORPHIS M IN COLD TOLERANC E AND L EAN MUSCLE GROWTH 44 3.1 Animals Investigated 46 3.2 Methods 46 3.3 Results 50 3.4 Discussion 55 3.5 Conclusions 59 SIRE LINE VARIATION IN NEONATAL LAMB COLD TOLERANCE Chapter 4 DISCUS S I ON AND FUTURE DIRECTI ONS OF RES E ARC H A c k n o w l e d g e me n t s References 60 65 67 A p pendices 1 C o s t o f N e o n a t a l L a mb M o r t a l i t y d u e 80 to Cold Exposure 2 H a mp s h i r e A u t o p s y R e p o r t ( 3 / 9 / 1 9 9 9 ) 81 3 Manufacturers Instructions for FTA 83 Card Purification. iv List of Tables Table 1. Page H eritability estim ate s f or gen e t i c c o mp o n e n t s o f l a mb c o l d t ol e ra n c e 17 2. T o t a l l a m b mo r t a l i t y i n e a c h t r i a l 29 3. T h e l a mb m o r t a l i t y c a u s e d b y c o l d e x pos u r e f o r e a c h s i r e- l i n e 33 4. A c c u r a c y o f t h e l o g i s t i c r e g r e s s i o n mo d e l s 34 5. 3 A R g e n o t y p e o f a l l t h e s i r e s u s e d i n t h e c o l d t o l e r a nc e study 50 6. S i r e l i n e Va r i a t i o n i n L e a n M u s c l e G r o w t h 52 7. V a r i a t i o n b e t w e e n 3 A R g e n o t y p e s i n Le a n M u s c l e G row th 8. 53 DNA sequ ences of the ovine 3 AR standards and the t w o mos t c o m m o n a l l el e s p res e n t i n t he L e a n Mus c l e G r o w t h t ri a l 54 v List of Figures F i g ure 1 Pa g e C a u s e s o f D e a t h i n N e o n a t a l L a mb s U n d e r N e w Z e a l a n d C o n d i t i o ns 1 2 Starvation - Exposure Interactions 3 3 Thermoregulation in Mamma l s 6 4 S ome factors contr olling non- s h i v e r i n g t h e r mo g e n e s i s 7 5 T h e s t r u c t u r a l c h a n g e s i n w o o l a s w i n d v e l o c i t y i n c r e a se s 1 0 6 Mortality of single and twin Merino lambs relative to birth w eight 7 12 The response to three years of upward and downward s e l e c t i o n f o r c o l d r e s i s t a n c e , u s i n g a wa te r ba th te st, i n n e w b o r n l a mbs o f t h e S c o t t i s h Bl a ck f a c e b r ee d 8 T h e a v e r a g e p r e d i c t e d d a i l y he a t l os s an d t h e c o l d m o r t a l i t y o n e a c h t r i a l d a y a t t he L i n c oln s i t e i n 20 0 0 9 30 T h e u n c o r r e c t e d a m o u n t o f l am b mo r t a l i t y d u e t o c o l d e x p o s u r e f o r e a c h 3 AR genotype 13 32 T h e i n f l u e n c e o f b i r t h w e i g h t u p o n l a m b mo r t a l i t y d u e t o c o l d e xp o s u r e i n e a c h o f t he f o u r t r i a l s a n a l y s e d 12 31 T he influence of bir th r a nk upon l a mb m o r t a l i t y d u e t o cold exposure 11 30 T h e a v e r a g e p r e d i c t e d d a i l y he a t l os s an d t h e c o l d m o r t a l i t y o n e a c h t r i a l d a y a t t he L i n c oln s i t e i n 19 9 9 10 15 51 PC R -SS C P gels conta ining the ovine 3 A R a l l e l e s t a n d a r d s a n d s o me o f t h e p r o g e n y o f 9 8 4 / 9 7 53 vi Chapter 1: Literature Review. Sire Line Variation in Neonatal Lamb Cold Tolerance N e o n a t a l l a mb mo r t a l i t y r e pre s e n t s a la r ge loss to Ne w Ze a la n d sheep farming. Not only is the industr y affected by the direct loss of t h e d e a d l a mb s , b u t g e n e t i c p o t entia l ( a nd he nc e f utur e pr oduc tion) is also reduced through having fe w e r l a mbs a t w e a n i n g a n d f e w e r rising adults from which flock replacements can be selected (Dalton, 1 9 8 3 ) . T h i s l o s s h a s b e e n v a l u e d i n t h e S h e e p I m p r o v e me n t L i mi t e d ( S . I . L . ) g e n e t i c i m p r o v e me n t s y s t e m a s v a r y i n g b e t w e e n $ 3 4 p e r l a mb b o r n , f o r d u a l - p u r p o s e b r e e d s t o $ 2 8 f o r t e r mi n a l s i r e b r e e d s a n d $ 2 3 f o r f i n e w o o l b r e e d s o f s h e e p ( A me r , 2 0 0 0 ) . Wi t h i n N e w Z e a l a n d i t h a s b e e n e s t i ma t e d t h a t a n a ve r a g e o f f i f t e e n p e r c e n t o f a l l l a mbs b o r n d i e be f o r e w e a n i n g e a c h y e a r ( Mc C u t c h e o n e t a l . 1981). Of these deaths, an average of 15% is thought to be due to c o l d e x p o s u r e ( G u m b r e l l & S a v i l le, 1986 - Figure 1), although this c a n r i s e t o 9 0 % o f n e o n a t a l l a mb d e a t h s u n d e r e x t r e me w e a t h e r c o nditions (O bst & D ay, 1968) . T h e ma g n i t u d e o f t h i s l o s s of l a mbs i s i l l u st ra t ed b y t h e fa c t t h a t , t h e w e i g h t o f me a t a n d w o o l p r o d u c e d e a c h y e a r i s mor e dependent upon the total number of lambs that survive to weaning, t h a n upon the individual pe r f orma n c e o f t h e l a mb s ( S i d w e l l e t a l . , 1 9 6 2 ; L a x & N e w t o n - T u r n e r , 1 9 6 5 ) . T h e r e f o r e a s s u mi n g t h a t i t i s h e r i t a b l e , i t c o u l d b e c o n c l u d e d t h a t s e l e c t i o n f o r e n h a n c e d l a mb s u r v i v a l i s e c o n o mi c a l l y mor e i mp o r t a n t t h a n s e l e c t i o n f o r production traits. Figure 1: Causes of Death in Neonatal lambs Under New Zealand Conditions (Data from Gumbrell & Saville, 1986). 1 Chapter 1: Literature Review 1.1 METHODS OF ESTIMATING NEONATAL LAMB COLD TOLERANCE T h e r e a r e t w o ma i n t e c h n i q ue s t h a t a r e c o m m o n l y u s e d t o e s t i ma t e ne o n a t a l c ol d t o l e r a nc e , f i e l d t r i a l s a n d t h e u s e o f a p r o g r e s s i v e l y c o o l e d w a t e r b a t h s t o me a s u r e t h e l a mb s ’ a b i l i t y t o ma i n t a i n h o mo t h e r m y . T h e u s e o f f i e l d t r i a l s u s i n g n e o n a t a l c o l d m o r t a l i t y a l l o w s t he a n a l y si s o f n e o n a t a l c o l d t o l e r a n c e u n d e r ‘ t y p i c a l ’ f a r mi n g c o n d i t i o ns . H o w e v e r , t h i s me t h o d h a s s ome l a r g e d i s a d v a nta g e s . I t i s v e r y l a b ou r i n t e n s i v e a n d , f o r a c c ur a c y , i t requires the use of autopsies to diagnose cold exposure deaths ( H aughey, 1993), though the de pr e ssion i n r e c t a l t e mpe r a t u r e 1 5 - 2 5 mi n u t e s a f t e r b i r t h ( S y k e s e t a l . , 1 9 7 6 ) h a s b e e n s u c c e s s f u l l y u s e d i n a f i e l d t r i a l t o e s t i ma t e n e o n a t a l l amb c o l d t o l e r a n c e . A d i a g n o s i s o f l a mb d e a t h fr o m i n a d e q u a t e c o l d t ol e ra n c e i n fie l d t r i al s h a s a l s o b e e n s u c c e s s f u l l y ma d e b a s e d u p o n d i r e c t o b s e r v a t i o n s ma d e b y t h e shepherd(s) (Purser & Young, 1964). T h e c l a s sif i c a t i o n of c o l d d e a t h u s i n g a u t o p s i e s i s d i f f i c u l t o w i n g t o t h e d i f f i c u l t i e s i n s e p a r a t i n g l a mb d e a t h s f r o m e x p o s u r e from those from simple starvation based on pathological o b s e r v a t i o n s ( M c Cu t c h e o n e t a l . , 1 9 8 1 ) . T h e r e a s o n f o r t h i s i s t h a t w h e n a l a m b d i e s f r o m e i t h e r s t a r v a t i o n o r e x p o s u r e t h e p r i ma r y cause of death is the exhaustion of the body’s energy reserves and t h e r e i s a l a r g e a mo u n t o f i n t e r a c t i o n b e t w e e n t h e t w o s y n d r o me s ( F igure 2). 2 Chapter 1: Literature Review Figure 2: Starvation - Exposure interactions (adapted from McCutcheon et al., 1981). T h e mo s t c o m m o n l y u s e d a u t o p s y t e c h n i q u e w a s i n i t i a l l y developed in the Hawkes Bay distri ct o f N e w Z e a l a n d ( M a c F a r l a n e , 1965) and later refined at the Un i v e r s i t y o f S y d n e y , A u s t r a l i a ( H a u g h e y , 1 9 7 3 ) . H o w e v e r , ma j o r i n a c c uracies have been identified i n t h i s t e c h n i q u e . Th e p e r i p h e r a l o e d e ma ( s w o l l e n t i s s u e i n t h e e x t r e mi t i es ( l i mb s , t a i l , ea r s an d muz z l e) d u e t o t h e p r e s e nc e o f e x c e s s f l u i d ) c o n s i d e r e d i n d i c a t i ve of c old injur y by Ha ughe y ( 197 3 ) i s n o t s e e n i n ma n y l a mb s t h a t d i e s o o n a f t e r b i r t h i n i n c l e me n t w e a t h e r , e v e n t h o u g h i t i s o f t e n s e e n i n l a mbs d y i n g mor e s l o w l y i n b a d w e a t h e r a f t e r h a v i n g s u c k l e d ( Ale xa nde r , 1985) . Ha ughe y ( 198 0 ) a l s o f o u n d t h a t s o me l a mb s b o r n b y c a e s a r e a n s e c t i o n ( 7 . 1 % ) e x h i b i t e d a t l e a s t o n e me n i n g e a l l e s ion (injury to one or more of the t h r e e me m b r a n e s e n v e l o p i n g t h e b r a i n and/or spinal cord) that was n o r ma l l y c o n s i d e r e d i n d i c a t i v e o f d y s t o c i a ( d i f f i c u l t o r p r o l o n g e d birth). No explanation was found fo r t h i s a s i t w a s t h o u g h t t h a t me n i n g e a l l e s i o n s o n l y o c c u r r e d a s a c o n s e q u e n c e o f p h y s i o l o g i c a l b i r t h t r a u ma a n d h y p o x i a , b o t h c o n d i t i o n s t h a t d o n ’ t o c c u r i n c a e s a r e a n s e c t i o n l a mb b i r t h s . A s a c o n s e q u e nc e , w h e n u s i n g t hi s autopsy technique, it appear s t h a t d y s t o c i a i s c o m m o n l y o v e r e s t i m a t e d ( a s s h o w n f i g u r e 1 , whe r e dystoc ia wa s thought to be i n v o l v e d i n 7 5 % o f l a mb d e a t h s ) . Another disadvantage of using f i e l d t r i a l s t o me a s u r e c o l d r e s i s ta n c e i s t h a t t h e w e a t h e r c a n b e a n 3 Chapter 1: Literature Review u n r e l i a b l e t e s t i n g a g e n t a n d i s v e r y h a r d t o p r e di c t a c c ur a t e l y i n advance (Slee, 1985). B e c a u s e of t h e d i f f i c u l t i e s i nv o l v e d w i t h u s i n g a u t o p s i e s t o d i a g n o s e d e a t h s f r o m i n a d e q u a t e cold tolerance, a laboratory t e c h n i q ue w a s d e v e l o p e d a t t h e A n i ma l B r e e d i n g R e s e a r c h O r ganisation (A B R O ), Edinbur gh, Sc otla nd tha t a llowe d the me a s u r e m e n t o f a l a m b s a b i l i t y t o g e n e r a t e h e a t a n d ma i n t a i n h o me o t h e r my ( S a ms o n & S l e e , 1 9 8 1 ; S l e e & St o t t , 1 9 8 6 ) . T h i s t e c h n i q u e i n v o l v e d i m me r s i n g l a mb s i n a p r o g r e s s i v e l y c o o l e d w a t e r b a t h a n d me a s u r i n g h o w l o n g i t t o o k f o r t h e l a mb ’ s r e c t a l t e mpe r a t u r e t o f a l l t o a p r e d ete r mi n e d l e v e l . T h i s r e s e a r c h h a s s i n c e b e e n r e pl i c a t e d b y ot h e r r e s e ar c h e r s i n N e w Z e a l a n d ( Wo l f f e t a l . , 1 9 8 7 ) u s i n g d i f f e r e n t b r e e d s a n d t h e results have shown, with very f e w e x c e p t i o n s , t h a t l a mb s f r o m h i g h c o l d r e si s t a n c e l i ne s ( t e st e d i n w a t e r b at h s ) a l s o t e n d t o s h ow t h e h i ghe s t c ol d r e s i st a n ce i n t h e fi e l d a n d t h e l o w e st c o l d i n d uc e d mor t a l i t y ( S l e e e t a l . , 1 9 8 0 ; S l e e , 1985). Unfortunately, the accuracy of this technique is limited b e c a u s e i t d o e s n o t a c c o u n t for t h e a mo u n t o f t h e r ma l i n s u l a t i o n p r o v i d e d b y t h e n e w b o r n l a m b ’ s b i r th c o a t a s a c c u r a t e l y a s o t h e r t e c h n i q u e s ( S l e e e t a l . , 1 9 8 0 ; S a ms o n & S l e e , 1 9 8 1 ) . I t i s f u r t h e r l i mi t e d b e c a u s e i t f a i l s t o t a k e i n t o a c c o u n t t h e e i t h e r t h e h e a t p r o d u c e d o r c o n s e r v e d b y b e h a v i o u r a l me c h a n i s ms s u c h a s h u d d l i n g a n d mo v e me n t . 4 Chapter 1: Literature Review 1.2 HEAT PRODUCTION IN NEW-BORN LAMBS H e a t p r o d u c t i o n ( t h e r mo g e n e s i s ) in the ne wbor n la mb is i mp o r t a n t a s i t mo v e s f r o m t h e e n v i r o n me n t i n t h e w o mb ( 3 9 C ) , t o t h e o u t si de w o r l d w h e r e t he a m b i e n t t e m p e r a t u r e c a n b e b el o w 0C. T o c o u n t e r t h e l o w e r t e mpe r a t u r e s o f t h e e x t e r n a l e n v i r o n me n t , mo s t l a mb s a r e a b l e t o g e n e r a t e a p p r o x ima t e l y 6 0 - 7 0 k J o f h e a t p e r k g o f b o d y f r o m t h e i r r e s e r v e s o f l i v e r a n d m u s c l e g l y c o g e n , a mi n o a c i d s a n d b r o w n a d i p o s e t i s s u e . T he s e r e se r ve s a r e n or ma l l y s u f f i c i e nt t o ma i n t a i n a l a mb s b o d y t e mp e r a t u r e f o r b e t w e e n 5 t o 1 2 h o u r s i n c o l d w e a t h e r a n d u p t o 3 - 4 d a y s i n g o o d w e a t h e r , d e p e n d i n g o n t h e l a mb s s i z e a n d p r e n a t a l n u t r i t i o n ( Ale xa nde r , 1962; Sle e , 1979) . Heat production in newborn la mbs o c c ur s b y t wo me c h a n i s ms : s h i v e r i n g a n d n o n - s h i v e r i n g t h e r mo g en e s i s ( Fi g u r e 3 ) . B o t h o f t h e s e me c h a n i s ms a r e a c t i v a t e d w i t h i n mi n u t e s o f a l a m b b e i n g b o r n a n d t h e y h a v e b e e n e s t i ma t e d t o c o n t r i b u t e 4 6 % a n d 3 1 % , r e s p e c t i v e l y , o f a n e w b o r n l a mb ’ s s u m mi t me t a b o l i s m ( t h e h i g h e s t a t t a i n a b l e me t a b o l i c r a t e i n r e s p o n s e t o c ol d e x p os u r e ) ( A l e x a n d e r & Wi l l i a ms , 1 9 6 8 ) . H o w e v e r , s h i v e r i n g t h e r mo g e n e s i s i s a c o mp a r a t i v e l y i n e f f i c i e n t me t h o d o f p r o d u c i n g h e a t, a s i t a l s o i n c r e a s e s t h e a mo u n t o f h e a t l o s t b y t h e l a mb b y d i s r u p t i n g t h e b o u n d a r y l a y e r o f a i r a r o u n d a l a mb , t h u s r e d u c i n g t h e e xte r na l insula tion ( Cla r ke e t a l . , 1 9 9 7 ) . T h e mu s c l e m o v e me n t i n v o l v e d i n s h i v e r i n g c a n a l s o i n t er fe r e w i t h t h e l a mb ’ s a b i l i t y t o find t h e u d de r a n d s u ckl e . It i s a s a c o n s e q u e n c e t h a t n o n - s h i v e r i n g t hermogenesis is activated before s h i v e r i n g i n o r d e r t o a v o i d t h e s e dif f ic ultie s ( Ale xa nde r , 1984) . Brown adipose tissue (BAT) is the pr inc iple site of nons h i v e r i n g t h e r mo g e n e s i s i n t h e n e w b o r n l a mb . B A T a c c o u n t s f o r a p p r o x i ma t e l y 1 . 5 – 2 . 0 % o f t h e n e w b o r n l a mbs b o d y w e i g h t ( A l e x a n d e r & Wi l l i a ms , 1 9 6 8 ) a n d i s l oc a t e d ma i n l y i n t he p e r i r e n a l a b d o mi n a l , i n g u i n a l a n d p r e s c a p u l a r a r e a s o f t h e l a mb ( A l e x a n d e r , 1 9 7 8 ) . B A T d i f f e r s f r o m w h i t e a d ip o s e t i s s u e ( W A T ) i n t h a t i t 5 Chapter 1: Literature Review possesses more extensive vascularisation and sympathetic i n n e r v a t i o n a n d h a s m o r e mi t o c h o n d r ia which are larger and more c o mplex than those found in W AT ( Hi mms- Ha ge n, 2000) . Cerebral Cortex "Voluntary " responses Hypothalamic temperature Hypothalamus "Involuntary" responses Skin thermoreceptors Thyroid Releasing Hormone (TRH) Pituitary gland Sympathetic Nerves Skin temperature Thyroid Stimulating Hormone (TSH) Thyroid gland Thyroxine (T4) Adrenal glands Catecholamines Sweat glands Perspiration Increased metabolic rate due to Non-shivering thermogenesis Peripheral blood vessels Skeletal muscle Constriction Movement or dilation and shivering (shivering thermogenesis) Figure 3: Thermoregulation in mammals. A complex network of activities involving both the nervous and endocrine systems (adapted from Curtis & Barnes, 1989). T h e mi t o c h o n d r i a wi t h i n B A T g i v e i t i t s c o l o u r a n d t h e y c o n t a i n a 3 2 k D A p r o t e i n o n t h e ir me m b r a n e c a l l e d u n c o u p l i n g p r o t e i n ( U C P ) . U n t i l r e c e nt l y i t w as t h o u g h t t ha t t h e r e wa s o n l y o ne type of UCP (UCP- 1). However, i n 1 9 9 7 t w o f u r t h e r s u b t y p e s o f UCP were identified (UCP-2 and -3), though their function in BAT h a s not yet been identifie d ( Himms- Ha ge n, 2000) . UCP- 1 is 6 Chapter 1: Literature Review responsible for the uncoupling of oxidative phosphorylation from mi t o c h o n d r i a l r e s p i r a t i o n ( a d e n o s i ne t r i p h o s p h a t e ( A T P ) s y n t h e s i s ) , w hich enables the B A T to ge ne r a te l a r g e a mo u n t s o f h e a t ( C a r s t e n s e t a l . , 1 9 9 7 ; C l a r k e e t a l . , 1997). This mechanism appears to be s t i mu l a t e d b y a n u m b e r o f d i f f e r en t e n d o c r i n e fa c t o r s , i n c l u d i n g t h y r o i d h o r mo n e s a n d c a t e c h o l a mi n e s ( F i g u r e 4 , A l e x a n d e r & Wi l l i a ms , 1 9 6 8 ; C l a r k e et al., 1 9 9 7 ) . COLD Brown Fat Cell HYPOTHALAMUS SYMPATHETIC NERVE 3-ADRENERGIC RECEPTOR CAPILLARY MITOCHONDRIA noradrenaline C Gs uncoupled oxidation ADENYLATE CYCLASE - CO2 UCP-1 cAMP PKA HSL HEAT O2 uptake FFA FFA Transcriptional regulation of genes required for lipolysis & thermogenesis NUCLEUS including the genes for UCP & LPL T3 receptors 1 -ADRENERGIC RECEPTOR Type II iodo th yrox in e 5’ monod eiod in ase THYROID GLAND T4 T4 T3 T3 F i g u r e 4 : S o me f a c t o r s c o n t r o l l i n g n o n- s h i v e r i n g t h e r mo g e n e s i s ( A d a p t e d f r o m G u n n & G l u c k ma n 1 9 8 9 ) . T h e s t i mu l a t i o n o f t h e s y mp a t h e t i c n e r v o u s s y s t e m ( F i g u r e 4 ) l e a d s t o t h e r e l e a s e o f n o r a dr e n a l i n e , w h i c h b i n d s t o t h e 3 a d r e n e r g i c r e c e pt o r s ( A R ) . T h e 3 - A R i n t u r n st i m u l a t e s t h e a c t i v i t y o f a d e n y l a t e c y c l a se , w h i c h r e s u l t s i n i n c r e a se d i n t r a c e l l ul a r c o n c e n t r a t i o n s o f c y c l i c a d e no s i n e mon o p h o s p h a t e ( c A M P - G u n n & G l u c k ma n , 1 9 8 9 ) . T h e a mp l i f i e d i ntr a c e llula r c onc e ntr a tions of c A M P a r e t h e n r es po n s i b l e for s t i mu l a t i n g t h e t ra n s c r i pt i on o f s e v e r a l g e n e s i mp o r t a n t f o r t h e rmo g e n e s i s i n c l u d i n g t h e g e n e s 7 Chapter 1: Literature Review r e s p o n s i b l e f o r l i p o p r o t e i n l i p a s e ( LPL – r e quir e d f or lipolysis of t r i g l y c e r i d e s t o f u e l t h e r mo g e n esis) and UCP-1 expression (Gunn & G l u c k ma n , 1 9 8 9 ; H i m m s - H a g e n , 1 9 9 0 ) . The thyr oid hor mo ne , tr ii o d o t h y r o n i n e ( T 3 ) i s a l s o i n v o l v e d i n r e gulating the expression of t h e g e n e c o d i n g U C P - 1 ( F i g u r e 4 ) , t h o u g h t h e m a i n e n z y me r e s p o n s i b l e f o r t h e c o n v er s i o n o f t h y r o x i n e ( T 4 – t h e i n ac t i v e t h y r o i d h o r mo n e ) t o T 3 in BAT is a lso r e gula te d by nor a dr e na line . Nor adrenaline stimulates (via 1 -adrenergic receptors) the activity of type II iodothyroxine 5’ monodeiodinase by up to 10 times within 2 hours of exogenous injection of noradrenaline (Silva & Larsen, 1983). T h e i n c r e a s e d a d e ny l a t e c y c l a s e a c t i v i t y a l s o pro mo t e s t he a c tivation of cA MP-depe nde nt pr otein kinase A (PKA) whi c h is r e s p o n s i b l e f o r t h e a c t i v a t i o n o f h o r mo n e - s e n s i t i v e l i p a s e ( H S L ) . H S L c a t a l y s e s t h e r a t e l i mi t i n g s t e p in triglyceride breakdown and l i p o l y s i s , p r o v i d i n g f r e e f a t t y a c i d s ( F FAs ) f o r t h e s t i mu l a t i o n o f U C P activity resulting in he a t pr oduc tion ( Himms - Ha ge n, 1990) . B l ood flow to and from BAT is the n e nha nc e d in order to deliver oxygen and other substrates required for the thermogenic process, and to remove and distribute the heat produced (Slee et al., 1987; Carstens et al., 1997). This change in blood flow is regulated by noradrenaline and can be as much as 5 or 6 times the normal blood flow in lambs (Gunn & Gluckman, 1989). Adenosine is also responsible for regulating the metabolism of BAT and is thought to be responsible for inhibiting BAT activity in the foetus. A de n o s i n e i nh i b i t s t h e increase of cAMP c a used by 3 a d r e n e r g i c r e c e pt o r s t i mu l a t i o n a n d t he i n c r e a s e i n t y p e I I i o d o t h y r o x i n e 5 ’ mo n o d e i d i n a s e a c t i v i t y c a u s e d b y 1 a d r e n o r e c e p t o r s t i mu l a t i o n ( Gu n n & G l u c k ma n , 1 9 8 9 ) . In addition to its body r e s e r ve s , t h e l am b i s a b l e t o u t i l i se 9 0 % of the energy supplied by ewe colostrum (7.3 MJ/kg) for t h e r mo g e n e s i s ( V e r m o r e l & V e r n e t , 1 9 8 5 ) . H o w e v e r , h y p o t h e r mi c 8 Chapter 1: Literature Review l a mbs ( w i t h r e c t a l t e mpe r a t u r e s b e l o w 3 7 C ) a p p e a r t o h a v e a s u p p r e s s e d d e s i r e t o s u c k l e ( A l e x a n d e r & Wi l l i a ms , 1 9 6 6 ) . E x p e r i me n t s h a v e sh o w n t h a t u s u a l l y 80% o f l a m b s w i l l s uc k l e w i t h i n 3 0 mi n u t e s o f b i r t h w h e n t he a v e r a g e a mb i e n t t e mpe r a t u r e i s 2 7 C , b u t w h e n t h e t e mpe r a t u r e i s r e d uc e d t o 5 C it takes 100 mi n u t e s f o r t h e s a me p r o p o r t i o n ( 8 0 %) of la mbs to suc kle ( Mc Br ide e t a l . , 1967). T he suckling inhibition i s p o s s i b l y a r e s p o n s e t o c o n s e r v e e n e r g y a n d a p p e a r s t o b e me d i a t e d v i a t h e c e n t r a l n e r v o u s s y s t e m ( A l e x a n d e r & Wi l l i a ms , 1 9 6 6 ) . O f a l l o f t h e f a c t o r s i n v o l v e d i n r e g ul a t i n g f a t mo b i l i sa t i o n a n d t h e r mo g e n e s i s i n t h e n e w b o r n l a mb , t h e r o l e p l a y e d b y c a t e c h ol a mi n e s a n d t h e i r a s soc i a te d r ec e p t o r s ( t h e a d r e n er g i c r e c e pt o r s) a p p e a r s t o b e t h e m o s t p r o mi n e n t . O t h e r f a c t or s l i ke t h y r o i d h o r mo n e s , a d e n o s i n e , H S L , P K A a n d U C P a l s o p l a y e s s e n t i a l r o l e s i n t he r e g u l a t i o n o f f a t m o bi l i s a t i o n a n d t he r mo g e n e s i s , t h o u gh i t w o u l d a p p e a r t h a t t he i r r o l e s a r e n ot a s p rominent and less diverse a s t h o s e pl a y e d b y c a t e c h ol a m i n e s a n d t h e i r r e c e pt o r s . 9 Chapter 1: Literature Review 1.3 THE THERMAL INSULATION OF NEW-BORN LAMBS. N e w b o r n l a mbs a r e r e ma r k a b l y c a p a b l e o f r e s i s t i ng c o l d t e mpe r a t u r e s i n dr y s t i l l ai r co n d i t i o ns . S t u d i e s ha v e s h o w n t h a t n e w b o r n l a mbs c a n ma i n t a i n h o mot h e rm y a t t e m p e r a t ur e s a s l o w a s 5 C ( A l e x a n d e r , 1 9 6 1 ) . H o w e v e r , t he a mb i e n t t e mp e r a t u r e a t w h i c h a l a mb c a n ma i n t a i n h o me o t h e r my i s r a i s e d i n t h e p r e s e n c e o r w i n d a n d / o r r a i n . Wi n d d i s t u r bs t he a mo u n t o f a i r t r a pp e d i n t h e f l e e c e , w h i c h i s t h e c h i e f d e t e r mi n a n t o f t h e a m o u n t o f i n s u l a t i o n p r o v i d e d b y t h e l a m b ’ s b i r t h c o a t ( Fi g u r e 5 ). Thus an increase in wind speed f r o m 0 . 1 m/ s t o 2 m/ s c a n d e c r e a s e f l e e c e i ns u l a t i o n b y a s muc h a s 3 0 % (Mount & B row n, 1982; Syke s, 1982) . A we t bir thc oa t c a use d b y r a i n o r t h e a mn i o t i c f l u i d s p r e s e nt a t b i r t h c a n c a u s e a 5 1 % i n c r e a s e i n a l a mbs me t a b o l i c r a t e a t a n a mb i e n t t e mpe r a t u r e o f 1 5 C ( A n d r e w s & M e r c e r , 1 9 8 5 ) . A s a c o n s e qu e n c e a we t f l e e c e c o mbi n e d w i t h t h e chi l l i n g e ffe c t s o f w i n d c a n b e d i s a s t r o u s. O b s t a n d E l l i s ( 1 9 77) found that up to 90% of Me r i n o a n d C o r r i e d a l e l a m b s d i e a t a n a mb i e n t t e mpe r a t u r e o f 8 - 1 2C w h e n w i n d s p e e d s e x c e e d 1 8 k m/ h a n d mor e t h a n 1 . 5 m m o f r a i n f a l l s d u r i n g t h e f i r s t s i x h o u r s a f t e r birth. F i g u r e 5 : T h e s t r u c t u r a l c h a ng e s i n w o o l a s t h e w i n d v e l o c i t y i n c r e a s e s ( A me s & I n s l e y , 1 9 7 5 ) . T h e l e n g t h a n d t y p e o f a l a m b ’ s c o a t a t t h e t i me o f b i r t h a l s o h a s a l a r g e i n f l u e n c e o n t h e n e w b o rn l a m b ’ s a b i l i t y t o w i t h s t a n d c o l d e x p o s u r e . A l e x a n d e r ( 1 96 1 ) f o u n d t h a t a t a n a mb i e n t t e mpe r a t u r e o f 0C , l a mb s w i t h f i n e b i r t h c o a t s w e r e r e q u i r e d t o p r o d u c e 3 0 % mo r e h e a t t o ma i n t a i n h o me o t h e r my t h a n l a m b s w i t h h a i r y b i r t h c o a t s . He a t c a n a l s o b e conserved in the newborn lamb by 10 Chapter 1: Literature Review t h e p i l o e r e c t i o n o f t h e h a i r s t h a t make up the birthcoat. This process along with the reduction in blood flow to peripheral areas of the b o d y ( v a s o c o n s t r i c t i o n ) i n r e s p o n s e t o c old e xposur e , ha s be e n f oun d t o b e s t i m u l a t e d b y t he p r e se nc e o f c a t ec h o l a mi n e s i n a s i mi l a r w a y t o w h i c h b r o w n a d i p o s e t i ss ue i s a ct i v at e d ( T h o m a s & P a l mi t er , 1 9 9 7 ) . P e r i p h e r a l v a s o c o n s t r i c t i o n conserves heat by redirecting b l o o d a w a y f r o m a r e a s o f t h e b o d y l i k e t h e f a c e a n d e a r s fr o m w h i c h h e a t i s mo s t e a si l y l o s t . 11 Chapter 1: Literature Review 1.4 PHYSICAL FACTORS AFFECTING COLD TOLERANCE IN LAMBS L a mb s w i t h b i r t h w e i g h t s o u t s i de o f a n o p t i mu m r a n g e ( w h i c h varies depending on the breed) suffer f r o m mor e d e a t h s f r o m e i t h e r e x p o s u r e a n d / o r d y s t o c i a ( F i g u r e 6 - Pu r s e r & Y o u n g , 1 9 6 4 ; H i g h t & J u r y , 1 9 7 0 ; S y k e s e t a l . , 1 9 7 6 ) . A t l o w b i r t h w e i g h t s , l a mb mo r t a l i t y d u e t o e xp o s u r e i nc r e a se s b e c a u s e t he a b i l i t y o f a l a mb t o p r o d u c e heat is proportional to its body we ight a nd the la mb’ s c a pa c ity to l o s e h e a t i s p r o p o r t i o n a l t o s u r fa c e a r e a . U n f o r t u n a t e l y , s m a l l l a mbs h a v e a g r e a t e r s u r f a c e a r e a per kilogram bodywe i ght (0.12 m - 2 / k g f o r a 1 k g l a m b ) t h a n l a r g e r l a mb s ( 0 . 0 7 m - 2 / k g f o r a 4 k g l a mb ) ( A l e x a n d e r , 1 9 7 4 ) . O t h e r f a c t o r s t ha t c ontr ibute to the e nha nc e d s u s c e p t i b i l i t y o f l i ght l a mbs t o c o l d e xp o s u r e , i nc l u d e l o we r l e ve l s of therma l insulation (wool and fat c o v e r ) , p l a s m a t h y r o i d h o r mo n e s ( V e r mor e l & V e r n e t , 1 9 8 5 ) a n d s mal l e r o r g a n s ( Al e x a n d e r , 1 9 8 4 ) . Figure 6: Mortality of single (plain columns) and twin merino lambs (shaded columns) relative to birth weight (Stevens et al.1982). In contrast, at high bir th we ights , t h e i n c i d e n c e o f l a mb d e a t h f r o m d y s t o c i a i nc r e a s e s ( S c a l e s e t al . , 1 9 8 6 ) . D y s t o c i a o c c u r s w h e n t h e p a s s a g e o f t h e l a mb t h r o u g h t h e p e l v i s o f t h e e w e i s r e s t r i c t e d d u r i n g t h e b i r t h i n g p r o c e s s a n d d e a t h c a n r e sult e ithe r dur ing or i m me d i a t e l y a f t e r b i r t h ( D u f f e t a l . , 19 8 2 ) . I n a d d i t i o n , no n - f a t a l d y stocia is thought to pr e dispose l a mb s t o d e a t h b y e x p o s u r e ( F i g u r e 2 ) . H a u g h e y ( 1 9 8 4 ) f o u n d t h a t l a mb mo r t a l i t y f r o m e x p o s u r e i n c r e a s e d f r o m 1 7 % i n l a mbs w i t h n o b i r t h i n j u r i e s f r o m d y s t o c i a t o 2 1 % in lam bs that exhib ite d signs of birth injury. However, Duff e t 12 Chapter 1: Literature Review a l . ( 1 9 8 2 ) f o u n d t h a t s u c k l e d l a mb s wi t h s i g n s o f b i r t h i n j u r y h a d t h e s a me m o r t a l i t y r a t e s a s suc k l e d l a m b s w i t h n o b i r t h i n j u r i e s . T h i s w o u l d a p p e a r t o s u g g e s t t h a t n o n fa t a l d y s t o c i a a f f e c t s t h e a p p e t i t e an d / o r v i go u r o f t h e l a mb , r e d u c i n g i t s d e s i r e/ a bil i t y t o s e ek food and thus predisposing it to death by exposure. Dystocia can a l s o c a u s e h y p o x i a w h i c h i n t u r n can result in the reduction of t h y r o i d h o r mo n e p r o d u c t i o n , l e s s b l ood flow to muscles (thus i n h i b i t i n g s h i v e ri n g) a n d t h e inhibition of BAT me tabolism ( V e r mor e l & V e r n e t , 1 9 8 5 ) . T h e i n f l u e n c e o f b i r t h r a n k ( F i g u r e 6 ) , t h e a g e of t h e e w e a t l a mbi n g a n d l a mb g e n d e r u p on l a mb m o r t al i t y i s p a r t i a l l y e x p l a i ne d by variation in birth weight caused by these factors (Hight & Jury, 1 9 7 0 ; S mi t h , 1 9 7 7 ; N i c o l l et al., 1 9 9 9 ) . P r e v i o u s s t u d i e s h a v e e s t a b l i s h e d t h a t ma l e l a mbs a r e b o r n o n a v e r a g e 0 . 2 0 t o 0 . 2 3 k g h e a v i e r t h a n f e ma l e s ( P u r s e r and Young, 1964; Hight and Jury, 1 9 7 0; S mi t h, 1977; Wolff e t a l., 1987) a nd tha t the a ve r a ge bir th weight of twins and triplets is 75% and 62% of the birth weight of single lambs (Hinch et al., 1985). As a consequence, females and m u l t i p l e bor n l a mbs g e n e r al l y h a v e h i ghe r mor t a l i t y r a t e s d u e t o c o l d e x p o s u r e ( H i g h t & J u r y , 1 9 7 0 ; N i c o l l et al., 1 9 9 9 ) . T h e a v e r a g e l i t t e r s i z e ( b i rt h r a nk ) a l s o i nc re a se s w i t h t he a ge o f t h e ewe a t l a mbi n g ( P u r s e r & Y o u n g , 1 9 6 4 ) . B o t h b i r t h r a n k a n d e w e a g e a l s o h a v e a s i g n i f i c a n t i n f l u e n c e o n t he mo t h e r i n g a bi l i t y o f t he e w e ( P a r k e r e t a l . , 1 9 8 7 ) . T h i s i s d e mo n s t r a t e d i n mul t i p l e l i t t e r s w h e r e t h e d i l u t i o n e f f e c t o c c u r s a nd s in g l e l a mbs a r e a b l e t o c on s u me o n a v e r a g e 35% mor e c o l u s t r u m t h a n t w i n a n d 6 0 % m o r e t h a n t r i pl e t s ( K a l l w e i t e t a l . , 1 9 85 ) . T h e c ol d r e si s t anc e o f mu l t i pl e b o rn l a mbs i s f u r t h e r c o m p r o mi s e d b y p r e m a t u r i ty , l o w e r t h y r o i d h o r mo n e l e v e l s a n d mor e d i f f i c u l t l a mbi n g s ( V e r mor e l & V e r n e t , 1 9 8 5 ; W o l l n e y et a l . , 1 9 8 5 ) . P a r i t y ( n u mb e r o f l a mb i n g s ) o f t h e e w e w a s i d e n t i f i e d b y P urser and Y oung (1959 ) a s ha vi ng a la r ge r inf lue nc e on la mb mortality than ewe age. 13 Chapter 1: Literature Review 1.5 THE GENETIC COMPONENTS OF COLD TOLERANCE. R a p i d g e n e t i c i mp r o v e me n t i n a n y t r a i t i s d e p e n d e n t o n f i v e f a c t o r s : a s h o r t g e ne r a t i o n i nt e r v a l , h i g h a c c u r a c y o f s e l e c t i o n , hi gh s e l e c t i o n i n t e n s i t y , a l ar g e a m o u n t o f v a r i a t i o n p r e s e n t i n t h e t r a i t from which to select from and a high heritability. Fortunately, cold t o l er a n c e i s me a s u r e d w e l l b efo r e t h e an i ma l b e c o me s s e x u a l l y ma t u r e a n d c o n s e q u e n t l y h a s n o ef f e c t u p o n t h e g e n e ration interval. A c c u r a t el y s e l e ct i ng fo r n e o n a t a l l a mb c o l d t ol e ra n c e c a n b e d i fficult ow ing to the vaga r ie s of t h e w e a t h e r a n d t h e u n c e r t a i n t y o v e r t h e a u t o p s y me t h o d s c o m m o n l y u s e d . T h e u s e o f p r o g r e s s i v e l y c o o l e d w a t e r b a t h s a p p e a r s t o o v e r c o me t h e s e d e fi c i e nc i e s b u t unfortunately it is not suitable fo r w i de s p r e a d us e i n t he f i e l d . T h e intensity of selection in any selective breeding program is entirely d e p e n d a n t ( a s s u mi n g mi n i ma l n a t ur a l s e l e c t i o n ) u p o n t h e e mp h a s i s p l a c e d u po n n e o n a t a l c o l d t o l e r a n c e c om p a r e d t o o t h e r t r ait s i n t h e b r e e d i n g p r o g r a m m e . B y c o m p a r i s o n , t h e a mo u n t o f g e n e t i c v a r i at i o n i s a l mos t e n t i r e l y i n fl u e n c e d b y n a t u r a l f a c t o r s l i k e t h e a mo u n t o f n a t u r a l v a r i a t i o n p r e se n t i n t h e p o p u l a t i o n , t h e a m o u n t n a t u r al s el e c t i o n ( oc c u r ri n g a s a r e s u l t o f p r e vi ou s ‘ b a d ’ w e a t h e r ) a n d i n d i r e c t s e l e c t i o n ( o c c u r r i n g t hr o u g h g e n e t i c c o r r e l a t i o n s w i t h other traits). I t h a s l o n g b e e n a c k n o w l e d g e d t h a t v a r i a t i o n e x i s t e d b e t we e n b r e e d s i n t h e i r a b i l i t y t o withstand cold e x p o s u r e ( S y k e s e t a l . , 1 9 7 6 ; S a ms o n & S l e e , 1 9 8 1 ; Wol f f e t a l . , 1987; Donnelly, 1983). More recently, Slee (198 5) ha s a lso b e e n a b l e t o e s t a b l i s h v a r i a t i o n in neonatal cold tolerance between lines of sheep within a flock ( F i g u r e 7), d e s p i t e t h e h e r i t a bi l i t y of la mb sur viva l be ing ve r y low ( 0 . 0 4 – L o p e z - V i l l a l o b o s & G a r r i ck, 1999). The heritability of s e l e c t i o n f o r e n h a n c e d r e s i s t a n c e t o c o l d e x p o s u r e w a s e s t i ma t e d a s 0 . 2 7 , a l t h o u g h t h e o b s e r v e d t h e h e r i t a bi l i t y o f t h e l i n e s e l e c t e d f o r r e d u c e d c o l d t o l e r a n c e w a s o n l y 0 . 0 1 , r e s u l t i n g i n v e r y little change i n c o l d r es i s t a nc e of t h i s l i ne ( S l e e & S t o t t , 1 9 86 ) . 14 Chapter 1: Literature Review F i g u r e 7 : T h e r e s po n s e t o t hr e e y e a r s of upwa r d a nd downwa rd s e l e c t i o n f o r c o l d r e s i s t a n c e , u s in g a w a t e r b a t h t e s t , i n n e w b o r n l a mb s o f t h e S c o t t i sh B l a c k f a c e b r e e d ( S l e e , 1 9 85 ) . Due the highly asymmetrical response to selection for and a g a i n st c ol d r e si s t a n c e , t h e a c c u r a c y of t h e s e r e s u l t s h a ve b e e n q u estioned. T his can be e xpla ine d b y t h e d i f f i c u l t y i n c a l c u l a t i n g t h e heritability of low cold resistanc e i n a s t u d y l i k e t h i s . T h e a v e r a g e c o l d r e si st a n c e me a s u r e d i n this breeding program was a p p r o x i ma t e l y 3 0 mi n u t e s . T h e l o w e s t r e c or d e d c o l d r es i s t a n c e w a s 1 7 mi n u t e s , w h i c h i s c l o s e t o t h e a v e r a g e w h e n c o mpa r e d w i t h t h e h i g h e s t c o l d r e s i s t a n c e ( 8 2 m i n u t e s) . C o n s e q u e n t l y t h e r e w a s v e r y l i t t l e s c o pe for s e l ec t i o n b el ow t h e a v er a g e c o mpa r e d w i t h s e l e ct i o n in the upward direction. The reason for the lack of phenotypic v a r i a nc e b e l o w t h e me a n mi g h t a l s o b e e x p l a i n e d b y n a t u r a l s e l e c t i o n . T h a t i s t h a t a n y l a m b s t o o f a r b e l o w t h e a v e r a ge a r e n a t u r al l y u n l i k el y t o s u r v i v e , t h e r e f o r e t h e y a r e u n a b l e t o p a s s t h e i r ‘ l o w c o l d r e s i s t a n c e ’ g e n e ( s ) o n t o ma i n t a i n a l a r g e a mo u n t s o f genetic variation below the mean. 15 Chapter 1: Literature Review F r o m t h e r e s u l t s o f b r e e d i n g p r o g r a ms l i k e t h a t s h o w n i n f i g u r e 7 , g e n e t i c v a r i at i o n i n c o l d t o l e r an c e h a s b e e n s e p a r a t e d i n t o t h r e e distinct groups (Slee, 1985): 1. P h y s i c a l ( ma i n l y i n s u l a t i v e ) c h a r a c t e r i s t i c s : b o d y w e i g h t , birthcoat type and skin thickness. 2. P h y s i o l o g i c a l a n d b i o c h e mi c a l c h a r a c t e r i s t i c s: Th y r o i d h o r mo n e ( T 3 & T 4 ) l e v e l s , p e a k me t a b o l i c r a t e c a p a c i t y , b r o w n a d i p o s e t i ss ue a c t i v i t y a n d c o l d r e s i s t a n c e . 3. B e h a v i o u r a l c h a r a c t e r i st i c s : e ar ly vigour , suc kling dr ive , ma t e r n a l c a r e a n d ma t e r n a l b o n d i n g . B r e e d i n g f o r o n e o r mor e o f t h e se t r a i t s c a n b e c o mp l i c a t e d b y i n t er a c t i on s w i t h o t h e r t ra i t s . F o r e xa mple , in W e lsh Mounta in she ep i t h a s b e e n f o u n d t h a t b o t h b i r t h w e i ght and birthcoat type are linked g e n e t i c a l l y a n d i n s o me b r e e d s , f i n e b i r t h c o a t s ( l o w i n s u l a t i v e v a lue) appear to be linked with b e t t e r a d u l t f l e e c e s a n d g r o w t h ( P u r s e r & K a r a m, 1 9 6 7 ) . S t o t t and Sle e ( 1987) a lso f ound tha t s e l e c t i o n f o r e n h a n c e d c o l d t o l e r a nc e w a s g e n e t i c a l l y a s soc i a t e d w i t h i n cr ea s e s i n s ki n t h i c k n es s , c o a t we i g h t p e r u n i t a r e a o f s k i n , total body insulation and the persistence of an enhanced metabolic r a t e w h e n t h e l a mb s w e r e e x p o s e d t o c o l d . P h e n o t y p i c c o r r e l a t i o n s w e r e a l s o d e t e c t e d be t w e e n c ol d t o l e r a nc e a n d i n c r e a s e d bi r t h w e i g h t , c o a t d e p t h a n d h i g h e r l e v e l s o f c o l d i n d u c e d me t a b o l i c r a t e . T h e h e r i t a b i l i t y o f s o me o f t h e se traits has been quantified and is shown in table 1 (over page). 16 Chapter 1: Literature Review Table 1: H eritability estima te s f or gen e t i c c o mp o n e n t s o f l a mb c o l d t ol e ra n c e Trait Heritability (H 2 ) Breed(s) Reference 0.2 - 0.3 Mer ino McGuirk e t a l. , 1982 D ystocia 0.13 V ar ious Smith , 1977 Matern al Beh av iour 0.15 V ar ious Park er e t a l. , 1982 0.25 - 0.6 Mer ino Gr egor y, 1982 Bir th w e ight Sk in th ickne s s ( a t 15-16 mo n th s o ld) Bir th co at le ng th 0.38 Mer ino crossbred s W olff et al., 1987 Bir th co at typ e 0.66 Mer ino Pon zon i e t a l. , 1995 0.75 Mu ltip le b irths* 0.102 – 0.139 Gr egor y, 1982 Ramb ou illet Sh elton & Men z ies, 1970 L a mb surv iv a l to 7 0.02 – 0.04 Mer ino McGuirk e t a l., 1982 0.27 S co t t ish B lac k f a c e Slee & Sto tt, 1986 0.36 Mer ino crossbred s W olff et al., 1987 d a ys C o ld r es i s t an ce (upw ard, measur ed in a w a ter ba th). * S e l ec t io n a g a in s t th i s t r a i t ( in o r d e r to enh an ce l a mb sur v i v a l) d ef ea ts the ov erall purpo se o f th is research and f ar min g ( to r a ise la mb produ ction). I n b r e e d i n g h a s b e e n f o u n d t o l e a d to an increased rate of lamb mortality in field trials (Galal, 1981). However, further i n v e s t i g a t i o n o f t h i s h a s s h o w n t ha t t he e f f e c t s o f h e t e r o si s a n d i n b r e e di ng u p o n l a m b mor t a l i t y a r e r e l a t i v e l y sma l l a n d a p p e a r t o a c t p r i ma r i l y t h r o u g h t h e g e n e s o f t h e l a m b ( L o p e z - V i l l a l o b o s & Garrick, 1999). 17 Chapter 1: Literature Review 1.6 The Role of the 3 Adrenergic Receptor Gene in Cold Tolerance A s described in the pr e vious s e c t i o n s , c o l d t ol e r a n c e i s a n e x t r e me l y c o mp l e x t r ai t t ha t i s i n f l u e n c e d b y a l a r g e n u mb e r o f p h y s i c a l , p h y s i o l o g i c a l a n d e n d o c r i n e fa c t o r s . T h i s s u g g e s t s t h a t c o l d t ol e ra n c e i s u nd e r t h e c on t r o l o f m u l t i pl e g en e s a n d t ha t g e n et i c i mp r o v e m e n t i n r e s p o n s e t o s e l e c t i on f or this tr a it would be slow (Alexander, 1984). Despite this, Slee (1985) was able to s u c c e s s f u l l y e s t a b l i s h t w o l i ne s o f S c o t t i s h B l ac kfa c e s h e ep w i t h d i v e r g e n t c o l d r e s i s t a n c e ( F i gu r e 7 ) . I n t h e l ow c o l d r e si s t a nc e line, the progeny of one sire e x h i b i t e d a n u n u s u a l r e a c t i o n t o n o r a d r e n a l i n e . Nor ma l l y t h e e x o g e n o u s i n j e c t i o n o f n o r a d r e n aline causes an increase in t h e r mo g e n e s i s o f a p p r o x i ma t e l y 200-250% in newborn lambs ( A l e x a n d e r & Wi l l i a ms , 1 9 6 8 ) , b u t i n t hi s s i r e l i ne , t h e p r oge n y e x h i b i t e d n o t h e r mo g e n i c r e s p o n s e ( S l e e e t a l . , 1987) . Fur the r ma t i n g s e s t a b l i s h e d t h a t t h i s e ffe c t w a s d u e t o a s i n g l e g e n e a n d t h a t t h i s g e n e w a s i n h e r i t e d i n a d o mi n a n t , M e n d e l i a n f a s h i o n . P h y s i o l o gi c a l s t u d i e s a l s o e st ab l i s h e d t h a t t h e B A T a n d t h e mi t o c h o n d r i a w i t h i n t h e B A T w e r e s t i l l p r e s e n t i n n o r ma l n u mbe r s i n t h e n o n - r e s p o n d e r l a mb s a n d t h a t t h i s genetic defect had no affect on b i r t h w e i g h t , g r o w t h o r s u r v i va l , t h o u g h s u r v i v a l u n d e r f i e l d c o n d i t i o n s w e r e n o t me a s u r e d . T h e se r e s u l t s l e a d t o t h e c o n c l u s i o n t h a t a s i n g l e ma j o r g e n e a f f e ct i n g t h e r m o g e n e s i s e x i s t s i n t h e c a t e c h o l a mi n e s t i m u l a t i o n p a t h w a y i n s h e e p ( S i mp s o n & S l e e , 1 9 8 8 ; Slee & Simpson, 1991). T h e 3 a dr e n e r gi c r e c e p t or ( A R ) i s a k e y c o mpo n e n t i n t he c a t e c h o l a mi n e s t i m u l a t i o n o f B A T ( s e e F i g u r e 3 ) a n d i t h a s b e e n p r o p o s e d t h e g e n e c o d i n g i t i s a l i k e l y c a n d i d a t e t o b e a ma j o r g e n e i n f l u e n c i ng n e o n a t al c o l d t o l e r a n c e . T h i s r e c e pt o r i s p a r t o f t h e G p r o tein coupled receptor supe r f a mi l y t h a t i s r e s p o n s i b l e for t h e me d i a t i o n o f t h e s y m p a t h e t i c c o n t r ol of va r ious me ta bolic pr oc e sses 18 Chapter 1: Literature Review i n t h e di ge s t i ve t rac t , s k el e t al mu s c l e a n d a d i p o se t i s s ue (E mo r i n e et a l . , 1989). It is in adipo se tissue tha t the 3 AR is found p r e d o mi n a t e l y a n d w h e r e t h e y a r e t h o ug h t t o p l ay a ma j o r r o l e i n t he r e g ulation of lipolysis (f a t use f o r e n e r g y ) a n d t h e r mo g e n e s i s . T h e h y p o t h e s i s t h a t t h e 3 A R g e n e i s a ma j o r g e n e a f f e c t i n g t h e e f f i c i e n c y o f t h e r mo g e n e s i s i n s he e p i s s u p po r t e d b y t h e r e c e pt o r being recognised as having the unique ability to resist desensitisation that occurs in response to prolonged exposure to c a t e c h ol a mi n e s l i k e n o r a d r e n a l i n e ( S us u l i c e t a l . , 1 9 9 5 ; B o u v i e r , 2000). This ability is unique to the 3 AR and does not occur in e i t h er t h e 1 or 2 ARs (Strosberg, 1997). Thi s f i n d i n g h a s l e a d t o t h e h y p o t h e s i s t h a t t h e p ri ma r y f u n c t i o n o f t h e 3 A R ma y b e t o ma i n t a i n s i g n a l l i n g d u r i n g p e r i o d s o f s u s t a i n e d s y mp a t h e t i c s t i mu l a t i on , s u c h a s t h a t w h i ch occurs in BAT during periods of chronic cold exposure (Susulic et al., 1995; Bouvier, 2000). T h e r e a r e s e v e r a l l i n e s o f e v i d e n c e f r om o t h e r sp e c i e s t h at s u p p o r t t h e h y p o t h e s i s t h a t v a r i a t i o n i n t h e 3 A R g e n e ma y b e linked with both neonatal lamb cold tolerance and reduced fat levels. T h e g e n e h a s b e e n i d e n t i f i e d a nd sequenced from a number of s p e c i e s , i n c l u d i n g h u ma n s , mi c e , r a ts, c a ttle , guine a pigs, monke ys , d o g s a n d h a ms t e r ( S t r o s b e r g & G e r h a r d t , 2 0 0 0 ) . I n h u ma n s a s i n g l e a mi n o a c i d s u b s t i t u t i o n ( t h e t r p 6 4 a r g mu t a t i o n ) i n t h e 3 AR g e n e w hich occurs in 10-50% of the popula tion ha s be e n f ound to be a ss ociated w ith rapid w e ight ga i n , l o w me t a b o l i c r a t e a n d i m p r o v e d fe r t i l i t y (Su s u l i c et al., 1 9 9 5 ; A r n e r & L o n n q v i s t , 2 0 0 0 ) . I t i s i n t er e s t i ng t o n o t e t h a t t h i s m u t at i o n a c t u a l l y r e s t o r e s t h e a r g i n i n e f o u n d i n m o s t a n i m a l s a t p o s i t i o n 6 4 i n t h e 3 AR gene, in the place o f t h e t r y p t o p h a n n o r ma l l y f o u n d i n h u ma n s ( S t r o s b e r g , 1 9 9 7 ; S t r o s b e r g & G e r h a r d t , 2 0 0 0 ) . T r a n s g e n i c mi c e w i t h t h e 3 AR gene “ k n o c k e d o u t ” h a v e a n i mp a i r e d t h e r mo g e n i c r e s p o n s e t o c o l d a n d i n c r e a s e d l e v e l s o f b o d y f a t ( S u s u l i c et al., 1 9 9 5 ) . Whi l e t h e e f f e c t s o f t h e 3 A R gene knockout in mi c e a r e r e l a t i v e l y mi l d , t h e r e i s 19 Chapter 1: Literature Review e v i d e n c e t h a t t hi s i s a r e s u l t of c o mpe n s a t o r y a c t i v i t y f r o m 1 a n d 2 A R s ( S u s u l i c et al., 1 9 9 5 ) . Ani mal models bred to study gen e t i c obe s i t y a n d d i a b e t e s ( t h e o b /ob and db/db mi ce re spe c tive ly) ha ve long be e n a c knowle dge d a s b e i n g c o l d i n t o l e r a n t ( H i m m s - Ha g e n , 2 0 0 0 ) . F u r t h e r s t u d i e s h a v e r e v e a l e d t h a t b o t h t h e n u mb e r a n d s i g na l l i n g e f f i c a c y o f t he 3 ARs i n o b / o b mi c e i s d e c r e a se d , r e i n f o r c i n g t h e l i n k b e t w e e n obe s i t y a n d i n a d e q u a t e c o l d t o l e r a n c e ( B o u v ie r , 2 0 0 0 ) . H o w e v e r i t i s d o u b t f u l w h e t h e r t h e r e i s a l i n k b e t w ee n t h e 3 A R a n d d i a b e t e s , a s 3 ARs have not been detected on the insulin secreting pancreatic cells. D e s p i t e t h i s , t h e r e i s e v i d e n c e t o s u g g e s t t h a t 3 A R s ma y s t i mu l a t e w h i t e a d i p o s e t i ss ue t o s i g nal t h e p a ncr e a t i c ce l l s t o i n du c e l ar g e i n c r ea s e s i n i n s ul i n s e c r et i o n ( L o w e l l e t a l . , 2000). R e c e n t l y , i t h a s be e n f o u n d t h a t v a r i a t i o n i n t h e f a t l e v e l of l a mbs a p p e a r s t o b e c o r r e l ated with variation in the 3 AR gene ( F o r r e st e t a l . , 2 0 0 1 ) . F u r t h e r mo r e t h e c o r r e l at i on b e t w e e n t h i s t r ai t a n d n e o n a t a l c ol d t ol e r a nc e a pp e a r s to be positive, so that genetic progress in one will also lead to progress in the other. This finding i s o f ma j o r i mp o r t a n c e t o t h e l a mb i n d u s t r y , a s l a mb i s p e r c e i v e d b y c o n s u me r s a s h a v i n g t o o mu c h f a t a n d t h e r e f o r e l e s s v a l u a b l e (Hammon d e t a l . , 1992). The inve stiga tion into the r ole of the 3 AR i n l e a n mus c l e g rowt h i s p o t e n t i al l y ext r e me l y v a l u a b l e t o t h e s h e ep industry. G e n e t i c va r i at i o n be t w e e n t wo l i n e s o f S c o t t i s h B l a c k fa c e s h e e p breed for high and low adult back fat, has been observed in neonatal l a mb b e h a v i o u r ( D w y e r e t a l . 2 0 0 1 ) . L a m b s f r o m e w e s s e l e c t e d f o r reduced levels of back fat were found to stand, suckle and play e a r l i e r t ha n l a mbs f r o m e w e s s e l e c t e d f or inc r e a se d le ve ls of ba c k f a t . T h e h i g h e r r a t e o f s u c k l i n g i n l a m b s i n t h e l e a n l i ne pe r s i st e d f o r 3 d a y s , t h e a p p r o x i ma t e l e n g t h o f t i me t h a t B A T l a s t s ( u n d e r good weather conditions) in starving lambs (Slee, 1979). These 20 Chapter 1: Literature Review f i n d i n g s f i t i n w i t h t h e h y p o t h e s i s t h a t p o l y mo r p h i s m i n t h e g e n e c o d i n g t h e 3 A R i s l i n k e d wi t h b o t h c o l d t o l e r a n c e a n d r e d u c e d f a t l e v e l s . L a m b s f r o m t h e l i n e s e l e c t e d f o r l e a n ne s s a p p e a r e d t o b e a b l e t o mo b i l i s e t h e i r b ro w n a d i p o s e t i ss ue fa s t e r , a l l ow i n g t h em t o s t a nd a n d s u c k l e e a r l i e r t h a n t h e i r c o u n te r p a r t s f r o m t h e f a t l i n e . T h i s study was carried out indoors and c o n s e q u e n t l y n o d i f f e r e n c e i n l a mb mo r t a l i t y d u e t o c o l d e x p o s u r e w a s o b s e r v e d . Fat is not only considered undesirable by the consumer but the production of waste fat is also inefficient as it utilises energy that would be able to be used for muscle growth (Cameron and Bracken 1992). With the development of in vivo fat measurement techniques like ultrasound scanning, the inclusion of fat depth into selection criteria has increased, particularly in terminal sire breeds. In terminal sire breeds of sheep, selection can be focussed on production traits in a small group of sheep that have a large influence on total lamb production (Simm, 1987; Cameron & Bracken, 1992). As a result of selection for these traits (and improved management), the average weight of lambs slaughtered in New Zealand over the period of 198686 to 1999-2000, has increased from 13.2kg to 16.5kg (an increase of 25% - Meat and Wool Economic Service of New Zealand, cited in Davison 2000). I f t h e 3 AR gene is confirmed a s a m a j o r g e ne t h a t s i g n i f i c a n t l y a f f e c t s n e o n a t a l l a mb c ol d t o l e r a n c e a n d / o r l e a n n e s s i n s h e e p , i t ’ s p o l y mo r p h i c n a t u r e ( F o r r e s t e t a l . , 2 00 1 ) w i l l al l o w i t ’ s u s e a s a ge n e t i c ma r k e r f o r t h e s e t r a i t s . T h i s w i l l p r o vi d e a l a r ge n u mbe r o f a d v a n t a ge s t o t he f a r me r b e c a u s e t h e ge n e t i c i m p r o v e me n t o f l a mb v i a b i l i t y s h o u l d b e p e r ma ne n t a n d c h e a pe r t o a c h i e v e t h a n i mp r o v i n g s h e l t e r a n d / o r p r o v i d i n g mo r e i n t e n s i v e s h e p h e r d i n g ( S lee, 1985). A lso by using the 3 A R g e n e a s a g e n e t i c ma r k e r , t h e i d e ntification of genetic a lly supe r i o r b r e e d i n g a n i ma l s s h o u l d b e m o r e a c c ur a t e t h a n p r e v i o u sl y a c h i e v e d u s i n g o t h e r s e l e c t i o n techniques. 21 Chapter 1: Literature Review 1.7 SUMMARY. A h i g h l e v e l o f l a m b mo r t a l i t y i s h i g hl y d e t ri me n t a l t o t h e p r o f i t a b i l i t y a n d s u c c e s s o f a n y s h e e p f a r mi n g e n t e r p r i s e . H o w e v e r o w i n g t o t h e e x t re m e l y l o w he r i t a b i l i t y o f l a mb s u r v i v al , se l e ct i o n f o r c o mp o n e n t s o f l a mb s u r v i v a l wi t h h i g h h e r i t a b i l i t i e s , l i k e c o l d t o l e r a n c e i s p r e f e r a b l e . M u c h r e s e a r c h h a s b e e n c a r r i e d o ut i n v e s t i g a t i n g t h e v a r i o u s b i o c h emi c a l , p h y s i o l o g i c a l a n d g e n e t i c e f f e c t s i n f l u e n c i n g n e o n a t a l l a mb c ol d t o l er a n c e . T h e s e s t ud i e s h a v e l e a d t o o u r h y p o t h e s i s t ha t t h e g e n e c o d i n g t h e 3 A R ma y b e a ma j o r g e n e t h a t s i gn i fi c a n t l y i n f l u e n c e s n e o n a t a l l a mb c o l d t o l er a n c e a n d t h a t i t ma y b e a b l e t o b e u s e d a s a g e n e t i c m a r k e r f o r c o l d t ol e ra n c e . R e s e a r c h i n o t h e r spe c i e s a nd mor e r e c e n t l y i n s h e e p h a s a l s o l i n k e d v a r i a t i o n i n t h e 3 AR ge ne with va r ying l e v e l s o f f a t c o v e r . T h e f a t c o n t e n t o f l a mb c a r c a s s e s i s a n e x t r e me l y i mp o r t a n t e c o n o mi c t r a i t i n b o t h d u a l p u r p o se a n d me a t b r e e d s o f s h e e p . A s a c o n s e q u en c e i t i s ho p e d t h a t n o t o n l y w i l l s i g n i fi c a n t s i r e l i n e v a r i a t i o n i n n e o n a t a l c o l d t o l e r a nc e w i l l b e e s t a b l i s h e d a n d l i n k e d t o v a r i a t i o n i n t h e 3 AR gene, but also that si g ni fi c a n t va r i a t i o n i n t h e fa t l e v e l s o f l a mbs w i l l b e l i n k e d t o va r i at i o n i n t h e s a me g e n e . 22 Chapter 2: Sire Line Variation in Neonatal Lamb Cold Mortality Introduction N e o n a t a l l a mb mor t a l i t y r e pre s e n t s a l a r g e e c o no mi c l o s s t o t h e New Zealand sheep industry with an average of fifteen percent of a l l l a mb s b o r n d y i n g b e f o r e we a n i n g e a c h y e a r ( M c C u t c h e o n e t a l . 1 9 8 1 ) . Fift e e n p e r ce n t o f t h es e d e a t hs a r e o n a v er a g e at t rib u t e d t o c o l d e x p os u r e ( Gumbrell & Saville, 1986), although this can rise to 9 0 % u n d e r e x t r e me w e a t h e r c o n di t i o ns ( O b s t & D a y , 1 9 6 8 ) . F r o m t h e s e f i g ur e s , t h e t ot a l e c o n omi c l o s s t o t h e N e w Z e a l a n d she e p i n d u s t r y c a u s e d b y n e o n a t a l l a mb m o r t a l i t y f r o m c o l d e x p o s u r e e q u a l s a pp r o x i ma t e l y 4 0 mi l l i o n d o l l a rs p e r a n n um ( s e e a pp e n d i x 1 ) and this figure is conservative, as it does not account for the loss of selection potential incurred by lambs not surviving until selection or the loss of production from those affected at sublethal levels. The losses also pose a welfare problem and therefore a risk to the industry, especially during severe cold weather when media attention in New Zealand frequently focuses on lamb deaths. R e s e a r c h h a s d e mo n s t r a t e d t h a t g e n e t i c v a r i a t i on i n n e o n a t a l l a mb c o l d t o l er a n c e e x i s t s n ot o n l y between but also within breeds o f sheep (Slee, 1985; Wolf f e t a l . , 1987) . Stott a nd Sle e ( 1987) e s t i ma t e d t h e h e r i t a b i l i t y o f l a mb c o l d t o l e r a n c e t o b e 0 . 2 7 i n a flock of Scottish Blackface, while Wol ff e t a l . ( 1 9 8 7 ) e s t i ma t e d t h a t i t w a s 0 . 3 6 i n a f l o c k o f N Z M er i n o c r o s s b r e e d s. T h e s e r es u l t s suggest that breeding for improved cold tolerance could be used to improve neonatal survival in sheep. However, these results were obtained using laboratory-based techniques to assess cold tolerance and while they are considered indicative of a lamb’s ability to survive cold exposure in the field (Slee et al. 1980; Slee 1985), they are not suitable for use by commercial breeders. 23 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality By comparison, this study used simple field techniques that are readily available to breeders with minimal or no training, to evaluate the extent to which sire-line (lines within each flock/breed separated according to sire) variation in cold tolerance occurs and how this could be used to improve lamb survival in a practical, or ‘on-farm’ situation. 2.1 Flocks Investigated & Lambing Locations 1999. Two flocks were used in 1999, a Hampshire flock (comprising 90 ewes and five sire groups) and a Borderdale flock (comprising 170 ewes and four sire groups). Lambing started on the 11th of August for the Hampshire flock and 24th of August for the Borderdale flock. The lambing of the Hampshire flock was carried out on a farm 4.72 km north of Temuka. This lowland farm possesses extensive shelter from the south in the form of an established macrocarpa (Cupressus macrocarpa) hedge. The pasture in these paddocks was relatively new (sown in 1995) and consisted of perennial ryegrass (Lolium perenne), and clover (Trifolium pratense (red) and Trifolium repens (white)). The soil is Wakanui silt loam and the stocking rate during lambing did not exceed 30 ewes per hectare, though this varied as newborn lambs and their mothers were separated from the flock after lambing. The Borderdale flock was lambed at the Lincoln University Research Farm. The paddock used for lambing this flock was flat, contained established perennial ryegrass and white clover pasture and was sheltered from south-east and the south-west by a variety of young deciduous trees. The soil type is Templeton silt loam and the stocking rate during lambing was approximately 25 ewes per hectare. 24 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality 2000. Five flocks were used in 2000, the Hampshire flock (100 ewes, four sire groups), the Borderdale (135 ewes, 2 sire groups), a Merino flock (150 ewes, 3 sire groups) and the Meat Quality Flock (420 ewes, six sire groups). The Meat Quality flock was comprised of Coopworth ewes mated to three Merino and three Dorset Down sires. Expected lambing dates were the 7th of August for the Merino flock, 24th of August for the Hampshire flock, 30th of August for Meat Quality Flock and the 4th of September for the Borderdale flock. The Hampshire Flock was lambed on the same paddocks used in the 1999 trial at a stocking rate of 35 ewes per hectare; the Borderdale and Meat Quality flocks were lambed at the Lincoln University Ashley Dene farm and the Merino Flock was lambed at the Lincoln University Research Farm. The Borderdale lambing paddock at Ashley Dene was flat, had Templeton silt loam soils and consisted of established perennial ryegrass and white clover pasture. This paddock was sheltered from the northeast by young gum trees (Genus Eucalyptus), from the south by a large ditch, in which the animals could huddle out of the wind and there was also limited easterly shelter from a mature macrocarpa hedge adjacent to the paddock. The Meat Quality lambing paddock was also flat, had Templeton silt loam soils and the pasture consisted of established perennial ryegrass and white clover. This paddock had a large sheltered area provided by an established Douglas Fir (Pseudotsuga menziesii) hedge on the southern boundary. The stocking rate in this flock during lambing was maintained at approximately 15 ewes per hectare, where possible. The Merino lambing paddocks were the same paddocks that were used to lamb the Borderdale flock in the 1999 trial (at the Research Farm). The stocking rate for the Merinos was approximately 20 ewes per hectare. 25 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality 2.2 Methods Field Observations at Birth The ewes were identified either by large plastic ear or neck tags and/or individual brass ear tags with the exception of the Merino flock, which only had coloured plastic eartags signifying their sire group. All lambs were weighed and tagged at birth using brass ear tags. All brass tags stated the flock name, year of birth and a unique identification number for each animal. The lamb tag number, dam tag number, sex of the lamb, date of birth, birth rank, and birth weight were all recorded at tagging (within 12 hours of birth). The probable cause of death was diagnosed for all dead lambs and the date of death was recorded. From the ewe tag numbers, the age of the ewe (with the exception of the Merino trial) and the sire group that the lamb belonged to was identified. Lamb Death from Cold Exposure Diagnosis The diagnosis of lamb death due to cold exposure was based upon field observations during lambing, using a technique similar to that used by Purser and Young (1964). Dead lambs were classified as having died from cold exposure if they died within four days of birth and no other cause of death was obvious, such as swollen heads (dystocia), membranes over nose (suffocation), unbroken feet membranes (stillborn) and birth defects (poor development or mummification). Lambs that were revived by artificial warming were classified as having died from cold exposure. 26 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality C l imate O b s e rv a tio n s Daily weather data was collected from the Lincoln University Weather Station at the Research Farm and 9.15 km from Ashley Dene. The weather data collected for the trial at Temuka was collected from the National Institute of Weather and Atmosphere (N.I.W.A.) weather station at Timaru Airport (10.55 km from the trial location). Variables recorded included precipitation (mm/day), average temperature (C) and the total wind run per day (km/day). Missing data were replaced with long-term mean values for the month by N.I.W.A. Combined Weather Variable Calculation T h e i mp a c t o f t h e cl i ma t i c c on d i t i o ns du r i n g t he n e o n a t al p e riod w as represented by a single f i g ur e i n di c a t i n g t h e a ve r a g e r a t e o f h e a t l os s ( H L ) pe r u n i t o f s u r f a c e a r e a b y a l a m b u n d e r g i v e n w e a t h e r co n d i t i o ns . T h e p r e d i c t e d ra t e o f h e a t l os s for e i t he r t h e d a y of birth or day of de a th ( if a p p l i c abl e ) w a s ca l c u l a t e d u s i n g t h e following equation derived by Coronato (1999), from the work of Mount and Brown (1982). The equation is: H L = 4 0 . 3 8 – ( 2 . 1 2 T) + ( 5.84 W) + ( 0 . 7 3 P ) Whe r e : HL = The average predicted rate of heat loss per unit of surface area by a lamb under given weather conditions. Measured in Watts per square metre (W m - 2 ). T = A v e r a g e da i l y t e mp e r a t ur e . M e a s u r e d i n C e l s i us ( C) . W = A v e r a g e da i l y w i n d s p e e d . M e a s u r e d i n me t r e s p e r second (m s-1). P = T h e d a i l y p r e c i pi t a t i o n . M e a su r e d i n mi l l i me t r e s (mm) . 27 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality S t a t i s t i cal A n a l ysi s The strength of the univariate relationships between potential predictors and lamb mortality due to cold exposure was assessed using Chi-square tests (categorical variables) and Ttests (continuous variables). Given the strong potential for interrelationships among the predictors of lamb mortality, which could lead to unstable parameter estimates in a multivariate analysis, the inter-relationships between the predictor variables was evaluated using Chi-square, 1-way ANOVA and correlation tests. Predictor variables without strong inter-relationship(s) and showing some association with lamb mortality due to cold exposure were retained for subsequent analysis using logistic regression, along with the most significant variable of any related pairing. The Logistic Regression model used was: Logit(mortality) = Mean +HL +BW + Sire 1 L o g i s t i c r e g r e s s i o n w a s u s e d t o c a lc u l at e s i r e l i ne v a r i a t i on i n l a mb mo r t a l i t y d u e t o c o l d e xp o s u r e b e c a u s e i t c a n a c c o m m o d a t e a b i n a r y d ep e n d e n t va r i a bl e (la mb c o l d d e a t h ) a nd mul t i p l e p r e d i ct o r v a r i a bl e s t h a t ca n be e i t he r m e t ri c ( b i r t h w e i g h t , p r e d i c t e d r a t e o f h e a t l o s s ) a n d n o n - me t r i c ( s i r e ) ( H a i r e t a l . , 1998). In SPSS (Version 10.0, SPSS Incorporated, Chicago), the true accuracy of the logistic regression models was calculated from the difference between how accurately the model predicted lamb mortality from cold exposure and the percentage of lambs born that did die from cold exposure. 1 a breed/location/year variable was also introduced for the combined dataset analysis. 28 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality 2.3 Results O f t h e 1 6 9 2 l a mb s b o r n i n t h i s s t u d y ( 4 4 4 i n 1 9 9 9 a n d 1 2 4 8 i n 2000), a total of 22.5% died (all causes) which included an outbreak of T o x o p l a s m a g o n d i i i n t w o o f t h e t r i a l s . T h i s o u t b r e a k w a s detected when the a larger number of dry ewes and stillbirths than usual was observed in the Hampshire trials in 1999 and 2000. The presence of T. gondii was confirmed by an independent autopsy (M. Colson 2 pers. comm. 1999, see appendix 2) of some of the dead lambs. The affected trials were removed from the analysis to prevent the effects of T. gondii from further c o n f o u n d i n g t h e r e s u l t s . A s a c o n s e q u e n c e , t h e t o t al l a mb m o r t a l i t y a c r o s s t h e r e ma i n i n g t r ials dropped to an average of 1 6 . 5 % o f a l l l a mbs b o r n . Table 2: Total lamb mortality in each trial. Hampshire Borderdale Meat Quality Merino Year No. of Lambs Born % Total Mortality 1999 2000 1999 2000 2000 2000 169 133 275 267 728 153 27 47 16 17 20 25 Effect of Climatic Conditions on Cold Induced Lamb Mortality L a mb m o r t a l i t y d u e t o c o l d e xp o s u r e i n e a c h t r i al f o l l o w e d a s i mi l a r t re n d t o t h e p r e d i ct e d r a t e o f he a t l os s i n t h e B o r de r d a l e 2000 (p=0.000), Meat Quality (p=0.002), and Merino trials (p=0.035 – Figure 8), but not in th e Bor d e r d a l e 1 9 9 9 t r i a l ( p = 0 . 2 3 0 – F i g u r e 9 ) e v e n w h e n t h e d a t a w e r e c or r e c t e d f o r t h e e f f e c t s o f s i r e a n d b i r t h w e i g h t u s i n g l o g i s t i c r e g re s s i o n . T h e B o r d e r d a l e 1 9 9 9 t r i a l was observed to have been exposed to considerably less severe c l i ma t e co n d i t i o ns t h a n t h e ot h e r t r i a l s. A l l t ri a l s w i t h t h e e x c e p t i on o f t h e M e r i n o ( p = 0 . 1 7 8 ) , e x h i b i t ed s i r e - l i n e v a r i a t i o n i n t h e predicted rate of heat loss (p<0.001). 2 Aorangi Veterinary Services Limited, Geraldine 29 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality F i g u r e 8 : T h e a v e r a g e p r e di c t e d d a i l y h e a t l os s a n d t h e c ol d m o r t a l i t y o n e a c h t r i a l d a y a t t h e L i n c oln s i t e i n 20 0 0 . Figure 9: The average predicted daily heat loss and the cold mortality on each trial day at the Lincoln site in 1999. 30 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality Effect of Lamb Birth Rank and Birth Weight on Cold Induced Lamb Mortalit y A s t h e n u m b e r o f l a m b s i n e ac h l i t t er (bi r t h r a n k) i n c re a s ed , t h e r e w a s a s i g n i f i c a n t i n c r e a s e i n t h e n u mbe r o f l a mbs d y i n g f r o m c o l d e x p o s u r e i n t h e M e a t Qu a l i t y ( p = 0 . 0 0 5 ) a n d M e r i n o t r i a l s ( p = 0 . 0 1 0 - F i g u r e 1 0 ) b u t n o t i n e it h e r B o r d e r d a l e t r i a l ( 1 9 9 9 – p=0.402, 2000 – p=0.056). Further analysis revealed that as the n u mbe r o f l a mbs i n e a c h l i t t e r i nc r ea s e d, t h e b i r t h w e i g h t o f e a c h i n d i v i d u a l l a mb d e c r e a s e d ( p < 0 . 0 0 1 ) . F i g u r e 1 0 : T h e i n f l u e n c e o f b i r t h r a n k u p o n l a m b mo r t a l i t y d u e t o cold exposure. Lamb death percentages that are s i g n i f i c a n t l y d i f f e r e n t ( p <0 . 05 ) a r e r e pr e s e n t e d by d i f f e r e n t a l p h a b e t i c s u b s c r i pt s a t t he t op o f e a c h b a r . A s b i r t h w e i g h t d e c r e a s e d t h e r at e o f l a mb m o r t a l i t y d u e t o cold exposure increased signifi c a n t l y ( p < 0 . 0 5 - F i g u r e 1 1 ) , t h o u g h t h i s e ffe c t w e r e n o t p r e s e n t i n e i t her o f t h e B o r d er d a l e t ri a l s a ft e r the data was corrected for the influence of sire line and the p r e d i c t e d r a t e o f h e a t l o s s . Thi s t re n d w a s p a r t i cu l a rl y s i gni fi c a n t o n c e t h e r a w b i r t h w e i g h t d e c r eased below 2.5 (Merino) – 4 kg (Borderdale 2000). Further analysis revealed sire line variation in b i r th w eight (p<0.001) i n al l t r i a l s w i t h t h e e x c ep t i o n o f t h e M e r i n o s ( p = 0 . 1 2 3 ) . L a mb s f r o m o l d e r e w e s w e r e f o u n d t o b e h e a v i e r ( p < 0 . 0 5 ) t h a n t h o s e f r o m y o u n g e r e w e s a n d ma l e l a mbs w e r e o b s e r v e d t o b e h e a v i e r a t b i r t h t ha n f e ma l e s ( p < 0 . 0 5 ) i n a l l t r i a l s with the exception of the Merino (p=0.168). 31 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality F i g u r e 1 1 : The influence of birth weight ( r a w ) u p o n l a mb m o r t a l i t y d u e t o c o l d e x p o s u r e i n e a c h o f t h e f o u r t r i a l s a na l y s e d . Effect of Dam age and Lamb Gender on Cold Induced Lamb Mortality T h e r e a p p e a r e d t o b e n o r e l a t io n s h i p ( p > 0 . 0 5 ) b e t w e e n t h e a g e o f t h e d a m a t l a mb i n g a n d l am b mor t a l i t y d u e t o c o l d e x pos u r e , d e s p i t e t h e r e l a t i o n s h i p b e t we e n d a m a g e a n d b i r t h w e i g h t . N o difference was observed in the numb e r o f l a mb s d y i n g f r o m c o l d e x p o s u r e i n e a c h g e n d e r ( p > 0. 0 5 ) e v e n t h o u g h g e n d e r w a s a l s o observed to influence birth weight. Sire line Variation in Cold Induced Lamb Mortality L a mb m o r t a l i t y d u e t o c o l d e xposure accounted for 11.2% of all l a mbs b o r n a n d 6 8 % o f a l l d e a d l a mbs i n t h i s s t u d y . Wh e n s i r e - l i n e s w e r e c o m p a r e d for t h e i n ci d en c e o f l am b mor t a l i t y d u e t o c o l d u s i ng C h i - s q u a r e me t h o d o l o g i e s , s i r e e f f e c t s w e r e s i g n i f i c a n t a t t h e 5 % level within the Coopworth – Dorset Down, Merino and 1999 B o r d e r d a l e t ri a l s ( Ta b l e 3 ) . Va r i at i o n be t w e e n s i re - l i n e s w as s i g n i f i c a nt a t t h e 1 0% l e v e l f o r a l l t r i a l s a n a l y s e d . 32 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality When the data was corrected for the influence of birth weight a n d t h e cli ma t i c c o n d i t i o ns pr e s e n t a t b i r t h/ d e ath , s i r e l i ne v a r i a t i on was observed in the Meat Qual i t y ( p = 0 . 0 1 5 ) a n d M e r i n o ( p = 0 . 0 0 5 ) t r i a l s a n d i n a c o mb i n e d d a t a s e t o f a l l t h e t r i a l s ( p < 0 . 0 0 1 ) , t h o u g h n o t i n e i t h e r B o r d e r d a l e t ri a l ( 1 9 9 9 – p = 0 . 1 1 6 & 2 0 0 0 – p = 0 . 8 5 9 ) . I t w a s a l s o n o t e d t h a t t h e b i r t h d a t es o f t h e l a mb s i n e a c h s i r e l i n e w e re not evenly distribute d ove r t h e l a m b i n g p e r i o d i n a l l o f t h e t r i a l s ( p < 0 . 0 0 1 ) w i t h t h e e x c e p t i on of the Merino trial (p=0.178). T a b l e 3 : T h e l a mb m o r t a l i t y c a u s e d b y c o l d e x pos u r e f o r e a c h s i r e line. Significant differences (p<0.05, univariate analysis) b e t w e e n si r e s w i t h i n t r i a l s i n l a mb d e a t h d u e t o c o l d exposure are represented by different alphabetic subscripts for t h o s e t r i a l s s h owi n g s i g ni fi c a n t si re - l i n e e ffe c t s . ( B = B orderdale, M = Me r ino, DD = Dor se t Down) Ewe Breed Borderdale Borderdale Coopworth Year 1999 2000 2000 Coopworth Merino 2000 Sire (Breed) Number of % Lambs that died Lambs Born from Cold Exposure 4/97 (B) 76 14a 25/94 (B) 60 3b 16/95 (B) 72 13a 82/95 (B) 59 7ab 263/98 (B) 63 8 266/98 (B) 166 17 8512 (M) 150 11a 8255 (M) 121 11a 8585 (M) 89 8b 129/97 (DD) 128 5a 238/97 (DD) 97 3a 122/98 (DD) 157 13b 26 (M) 54 6a 132 (M) 43 33b 356 (M) 51 25b 33 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality Accuracy of the Logistic Regression Models The accuracy of the logistic regression models varied by between 0 and 5.6% depending upon the trial (Table 4), though there were minimal errors in the logistic regression models prediction of which lambs would die from cold exposure (0 errors in Borderdale 1999 & Meat Quality, 3 in Borderdale 2000 & 5 in Merino). The errors were mainly confined to the prediction of which lambs would survive cold exposure (26 errors in Borderdale 1999, 17 in Borderdale 2000, 61 in Meat Quality, 26 in Merino). Table 4: The Accuracy of the Logistic Regression Models. Trial Year Logistic Regression Prediction 90.3% 91.3% Difference 1999 2000 Actual Survival 89.05% 85.7% Borderdale Meat Quality 2000 91.3% 91.6% 0.3% Merino Pooled Data 2000 - 79.7% 88.9 79.7% 89.1% 0% 0.2% 0.95% 5.6% 34 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality 2.4 Discussion T h e a v e r a g e n e o n a t a l l a mb m o r t a l i t y o f t h i s st u dy w a s 1 6 . 5 % c o mp a r e d w i t h t h e pr e v i o u sl y r e p o r t e d a v e r a g e o f 1 5 % f o r N e w Z e aland flocks by McC utc he on e t a l . (1981), suggesting that this s t u d y a c c u r a t e l y r e p l i c a t e d l a mb m o r t a l i t y f o u n d u n d e r t y p i c a l N e w Z e a l a n d f a r mi n g c o n d i t i o ns . L a mb m o r t a l i t y f r om c o l d e x p o s u r e a c c o u n t e d f o r 1 1 . 2 % o f a l l l a mb s b o rn i n t h i s s t u d y ( 6 8 % o f t o t a l l a mb d e a t h s ) . T h i s w a s mu c h h i g h e r t ha n mo s t r e s u l t s r e po r t e d i n the literature, including those of Purser & Young (1964), who used a s i mi l a r me t h o d f o r t h e d i a g n o s i s o f c o l d d e a t h . T h e mo r t a l i t y b e f o r e 1 4 d a y s c l a s s ( s i mi l a r t o t h e l a mb d e a t h f r o m c o l d e x p o s u r e classification in this study) used by Purser & Young contained 46% o f a l l l a mbs d y i n g o n t w o f a r ms i n S c o t l a n d & N o r t h Wa l e s . T o p u t Purser & Young’s work in context, the overall mortality in their s t u d y w a s 1 3 % o f a l l l a mb s b o r n , c o mp a r e d w i t h 1 6 . 5 % i n o u r s t u d y a n d they used breeds of she e p not f ound in Ne w Ze a la nd ( Sc ottish B l a c k f a c e & We l s h M o u n t a i n ) . T h e str e ngth of the c old c ha lle nge was not measured by Purser & Young, which prevented a c o mpa r i s o n o f t h e e n v i r o n me n t a l conditions between studies. A s i mi l a r l a mb mor t a l i t y s t u d y w a s c a r r i e d o u t b y U p r e t i ( 1 9 8 9 ) 1 1 y e a r s p r e v i o u s l y o n t h e s a me f a r m ( L . U . R e s e a r c h f a r m) a s s o me o f t h e t r i a l s i n t h i s s t u d y . T h e t o t a l mor t a l i t y o f t h e l a mbs b o r n o u t s i d e i n U p r e t i ’ s s t u d y ( 29% ) wa s highe r tha n tha t r e por te d h e r e , d e s p i t e U p r e t i s t u d y i n g h i gh f e c undity Boor oola Coopwor th cross ewes which are acknowledged as having lower survival rates ( d u e t o l a r g e r l i t t e r s i z e s) t h a n o t h e r bre e d s ( H i nc h e t a l . , 1985). F i ft y t h r ee p e r c e nt o f t h e l a m b mo r t a l i t y i n U p r e t i ’ s w o r k w a s a t t r i b u t e d t o s t a r v a t i o n - e x p o su r e u s i n g t h e a u t o p s y me t h o d o r i g i n a l l y d e v e l o p e d b y M a c F a r l a n e (1965). This result is surprising c o n s i d e r i n g t h e c o r r e l a t i o n be t w e e n birth rank and sus c e pt i b i l i t y t o c o l d e x p o s u r e ( H i n c h e t a l . , 1985) and the use of an autopsy t e c h n i q u e t h o u g h t t o u n d e r e s t i ma t e d e a t h s f r o m c o l d e x p o s u r e . 35 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality V a r i a t i o n b e t w e e n t r i a l s w a s fo u n d t o e x i s t i n t h e a c c u r a c y o f t h e l o g i s t i c r e g r e s s i o n mo d e l u s e d t o a na l y s e si r e l i n e v ar i at i o n i n n e o n a t a l l a mb m o r t a l i t y d u e t o c o l d e x p o s u r e . W h i l e t h e m o d e l s w e r e e x t r e me l y a c c u r a t e a t pr e d i ct i n g l a mb mor t a l i t y d u e t o c o l d e x p o s u r e , c o n s i d e r a b l e v a r i a t i o n w a s f o u n d i n t he i r a b i l i t y t o p r e d i ct l am b s u r v i v a l . T h i s wa s t h e re sul t o f mor e l a mbs d y i n g t h a n w a s e x p e c t e d a f t e r a n a l y s i n g t h e c o mbi n e d e f f e c t s o f s i r e , bi r t h weight and the predicted rate of heatloss. This has been previously o b served by A lexander (1984) , who f o u n d t h a t a c o r e l e v e l o f l a mb l o s s e s r e ma i n e v e n u n d e r i d e a l w e a t h e r c o n d i t i o n s a n d o p t i ma l ma n a g e m e n t . The variation in lamb mortality b e t w e e n t r i a l s o b s e r v e d i n t h i s study prevented any between breed comparisons from being carried o u t , t h o u g h t h e h i g h e s t r a t e o f l a mb mo r t a l i t y d u e t o c o l d e x p o s u r e was observed in the Merino trial. Previous work has shown that c o n s i d e r a b l e v a r i a t i o n i n n e o n a t a l l a m b c o l d t ol e r a n c e d oe s e x i st between certain breeds of sheep (Sykes e t a l . , 1 9 7 6 ; S a ms o n & S l e e , 1 9 8 1 ; D o n n e l l y , 1 9 8 3 ; Wo l f f e t a l . , 1 9 8 7 ) . A p a r t f r o m b r e e d / g e n e t i c v a r i a t i o n , o t h e r s o u r c e s o f i n t er - t r i a l v ar i at i o n a s s u me d t o b e p r e s e n t i nc l u d e d t he e f f e c t i ve n e s s o f t h e s h e l t e r p r e s e n t dur i n g l a mbi n g ( d u e t o i t s o r i e n t a t i o n t o t h e p r e v a i l i n g w i n d s a n d p o r o s i t y ) a n d v a r i a t i o n i n i n fe c t i o n s t a t u s b e t w e e n t r i a l s . V a r i a t i o n b e t w e e n t h e c l i ma t e c o n d i t i ons p r e s e nt d u ri n g l a m b i n g i n e a c h t r i a l w a s o b s e r v e d d u e t o d i ffe r e n c e s i n l a mbi n g d a t e s . F o r e x a mp l e t h e w o r s t w e a t h e r c o n d i t i o ns e n c o u n t e r e d b y t h e B o r d e r d a l e 1 9 9 9 t r i a l w a s 1 5 0 W/ m 2 whereas the same fl ock in 2000 had two weather incidents a b o v e t h i s l e v e l ( o n e s u c h inc ide nt r e a c he d 248 W/ m 2 ) . F i x e d E f f e c t s : D am A g e a n d L a m b G e n d e r D a m a g e a p p e a r s t o i n f l u e n c e a l a r ge nu mbe r o f f a c t o r s t ha t c a n i n f l u e n c e n e o n a t a l l a mb m o r t a l i t y c a u s e d b y c o l d e x p o s u r e . P u r s e r a n d Y oung (1964) found tha t the f r e que nc y of twinning inc r e a se d w i t h e w e a g e , r e s ul t i n g i n a n i n c r ea s e i n n e o n a t a l l a mb c o l d 36 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality m o r t a l i t y . T h i s a s s oc i a t i o n w a s n o t o b s e r v e d b y S mi t h ( 1 9 7 7 ) , w h o f o u n d t h a t l a mb b i r t h w e i g h t i n c r e a se d w i t h e w e a g e , o r b y P a r k e r et a l . ( 1 9 8 7 ) , w h o f o u n d t h a t ma t e r n a l behaviour improves as ewes get o l d e r , b o t h f a c t o r s l e a d i n g t o i mp r o v e d n e o n a t a l l a mb c o l d t o l e r a n c e . A l t h o u g h l a mb b i r t h w e i g h t w a s a l s o f o u n d t o i n c r e a s e w i t h e w e a g e , i mp r o v e d l a mb c o l d t ol e r a n c e d u e t o e w e a ge w a s n o t o b s e r v e d i n t h i s s t u d y o r i n t h e w o r k o f H i n c h e t a l . (1985). S o me l a m b mor t a l i t y s t u d i e s h a v e f o u n d t h a t f e m a l e l a mb s a p p e a r t o h a v e h i g h e r s u r v i v a l r at e s t han ma l e l am b s d e s p i t e r e s ul t s t ha t s how t ha t ma l e l a mbs a r e bor n he a vi e r (Purser and Young, 1964; Smith, 1977; Wolff et al., 1987) . M a l e l a mb s w e r e f o u n d t o h a v e h i g h e r b i r t h w e i g h t s t h a n f e ma l e s i n t h i s s t u d y , t h o u g h n o difference between ma le and fe ma le l a m b s u r v i v a l w a s o b s e r v e d . Fixed Effects: Birth Ra n k a n d B i r t h W e i g h t A s t h e n u m b e r o f l a m b s i n e a c h l i t t e r i n c r e a se d , t h e r e w a s a c o r r e s p o n d i n g d r o p i n t h e a v e r a g e lamb birth weight leading to d e c r e as e d n e o n a t al l a mb c o l d t o l er a n c e. T h i s e ffe c t w a s simi l a r t o that found for total mortality in other studies (Purser & Young, 1 9 6 4 ; H i g h t & J u r y , 1 9 7 0 ; S t e v e n s et al., 1 9 8 2 ) a n d a p p e a r e d t o c o mpl e t e l y e x p l a i n t h e r o l e o f b i r t h r a n k u p o n n e o n a t a l l a m b c o l d mortality in this study. It was fo r t h i s r e a s o n t h a t b i r t h r a n k w a s o mi t t e d fro m t h e l og i s t i c r e gr e s s i o n mo d e l , d e s pi t e h a vi n g a l a r ge i n f l u e n c e u p o n n e o n a t a l l a mb m o r t a l i t y . A ft e r c o r re c t i n g t h e d a t a for t h e i n f l u e nc e o f t h e c l i ma t e a n d sire line, birth weight was iden t i f i e d a s t h e v a r i a b l e h a v i n g t h e s i n g l e l a r g e s t i n f l u e n c e u p o n n e o n a t al l a mb c o l d mor t a l i t y i n t h e M e a t Q u al i t y a n d M e r i n o t ri a l s . T h e t r e n d t h at , a s b i rt h w e i g h t increased, there was a correspondi n g d e c r e a s e i n l a mb mor t a l i t y d u e t o c o l d e x p o s u r e w a s t h e s a me a s t h a t o b s e r v e d b y P u r s e r & Y o u n g ( 1 9 6 4 ) , H i g h t & J u r y ( 1 9 7 0 ) a n d S y k e s e t a l . (1976). This trend appeared to be particularly si g n i f i c a n t b e l o w 2 . 5 – 4 k g ( d e p e n d i n g 37 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality o n t h e b r e e d ) a n d w a s a l s o o b s e r v e d in the Borderdale trials, though t h e r e w a s s i r e l i n e va r i at i o n i n b i r t h w e i g h t i n t h i s f l o c k , w h i c h c a n c e l l e d o u t t h e e ff e c t o f b i r t h w e i g h t i n t h e l o g i s t i c r e g r e s s i o n m o d e l . S i r e l i n e v a r i a t i o n i n b i r t h we ight wa s a lso obse r ve d in the M e a t Q u al i t y t ri a l an d w a s s i mi l a r t o t h e r e s u l t s p r e v i o u sl y r e p o r t e d i n M c G u i rk e t a l . (1982), Smi t h (1977) and Dwyer e t a l . (2001). D u e t o t he l a r ge i nfl u e n c e o f b i r t h w ei g h t o n l am b mor t a l i t y due to cold exposure, the question is raised whether selection for b i r t h w e i g h t a s a me t h o d o f i mp r o v i n g l a mb s u r v i v a l w o u l d b e b e t t er t h an s e l e ct i on fo r c o l d t o l er a n c e. T h i s a p pr o a c h ma y b e f a v o u r e d b e c a u s e di r e c t s e l e c t i o n f o r b i r t h w e i gh t i s s i mp l e a n d r e mo v e s t h e r e q u i r e me n t f o r a c o l d c h a l l e n g e , w h i c h i s i mp o s s i b l e t o s t a n da rd i s e a cr o ss a l l l a mb s i n a c o mme r c i a l fl o c k ( H a l ey e t a l . 1 9 8 7). H ow ever, selection f or highe r bir th we ight in a n a tte mpt to i n c r e a s e l a mb s u r v i v a l i s c onf ounde d by the la r ge numbe r of interactions between bi r t h w e i g h t a n d t h e p r e s e nc e o f d i s e a s e a n d / or i n f e c t i o n , b i r t h r a n k , l a mb g e n d e r , ma t e r n a l a g e , s i z e a n d p a r i t y ( A l e x a n d e r 1 9 7 4 ) . La mb s w i t h h i g h b i r t h w e i g h t s ( a n d t h u s m o r e c o l d t ol e ra n t ) ar e als o p r e d i s po s ed t o d e a t h f r o m d y s t o c i a ( S c a l e s et a l . 1986). Fixed Effect: Climate O b s t & D a y ( 1 9 6 8 ) a n d C o r o n a t o ( 1 9 9 9 ) f o u n d t h a t c l i ma t e h a d a l a r g e i n f l u e n c e u p o n n e o n a t a l l a mb m o r t a l i t y s i mi l a r t o o u r f i n d i n g s i n t h e B o r d e r d a l e 20 0 0 , M e a t Q u a l i t y a n d M e r i n o t r i a l s . W h i l e t h e B o r d e r d a l e 1 9 9 9 t r i a l f o l l o we d t h e s a me t r e n d a s t h e o t h e r s , t h e t r e n d wa s n o t s i g n i f icant, apparently due to the low a v e r a g e pr e d i c t e d r a t e o f h e a t l o s s i n t h i s t ri al . A s a c o n s e q u e n c e t h e c o l d c h a l l e n g e ma y n o t h a v e been sufficient to cause enough l a mb d e a t h s f r o m c o l d e x p o s u r e t o e s t a b l i s h v a r i a t i o n b e t w e e n s i r e l i n e s i n t hi s t ri al . 38 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality The presence of variation in col d e x p o s u r e b e t w e e n s i r e l i n e s w i t h i n t r i a l s ma y h a v e s l i g h t l y c o n f o u n d e d t h e r e s u l t s , d e s p i t e t h e e f f e c t b e i n g a c c o u n t e d f o r i n t h e l o gistic regression analysis. This i ssue could have been avoide d b y s y n c h r o n i s i n g e q u a l n u m b e r s o f e w e s p e r r a m t o b e ma t e d e a c h w e e k ( o r o t h e r a pp r o p r i a t e t i me p e riod) during the joinin g pe r iod. As a r e s u l t a s i mi l a r n u m b e r o f l a mb s p e r s i r e w o u l d h a v e b e e n b o r n a t a n y g i v e n t i me . C o r o n a t o f o u n d t h a t t h e c l i ma t i c c o n d i t i o n s i n the two weeks p r i o r t o b i r t h h a d a l a r g er i n flu e n c e u p on l a mb m o r t al i t y t ha n t h e c o n d i t i o n s a t t h e t i me o f b i r t h , t h o u g h t h i s o b s e r v a t i o n w a s ma d e i n C e n t r a l Pa t a g o n i a w h e r e t h e a v e r a g e p r edicted rate of heat loss from a l a mb r a r e l y e x c e e d e d 5 0 W/ m 2 . O b s t a n d E l l i s ( 1 9 7 7 ) f o u n d t h a t o n c e t h e pr e d i ct e d ra t e o f h e a t l o s s e xc e e d e d 5 7 W/ m 2 , s i g n i f i c a n t l a mb mor t a l i t y i n M e r i n o a n d C o r r ie d a l e s o c c u r r e d . B y c o m p a r i s o n , l a mb mor t a l i t y d u e t o c o l d e xp o s u r e i n t h i s t r i a l i n c r e a se d ma r k e d l y once the predicted rate of heat loss exceeded 97 (Borderdale 1999), 1 0 5 ( B o r d e r d a l e 2 0 0 0 a n d M e a t Quality) and 108 W/ m - 2 ( M e r i n o ) . The wind chill index was first developed by Siple and Passel ( 1 9 4 5 ) f o r h u ma n s w o r k i n g i n A n t ar c t i c a . T h i s i n d e x w a s d e s i g n e d t o me a s u r e t h e a mo u n t o f h e a t l ost by huma n bare skin from wind s p e e d a n d t e mp e r a t u r e a n d h a s b e e n s u b s e q u e n t l y f o u n d t o b e i n v a l i d f o r w o o l l y ( o r h a i r y ) a n i ma l s, pa r tic ula r ly a t wind ve loc ities g r e a t e r t h a n 4 0 k m p e r h o u r ( A me s & I n s l e y , 1 9 7 5 ) . F u r t h e r i n a c c ur a c y w a s i n t r o d u c e d b y t h e f a i l ur e t o a c c o unt f o r t h e c h i l l i n g e f f ects of precipitation, though Sykes e t a l . ( 1 9 7 6 ) s t a t e d t h a t t h i s i s o f r e d u c e d i mp o r t a n c e f o r n e w b o r n l a mb s a s t h e y a r e a l r e a d y w e t f r o m a mn i o t i c f l u i d s . Sensitivity analysis of the Cor o n a t o ( 1 9 9 9 ) w i n d c h i l l mod e l r e f l e c t s t he r e d u c e d i mp o r t a n c e o f p re c i p i t a t i o n i n c o o l i n g l a mbs . I n t h e C o r o n a t o mo d e l , t h e g r e a t e s t v ar i a t i o n i n t h e p r e d i c t e d r a t e o f 39 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality h e a t l o s s i s i n d u c e d b y w i n d , w h i l e t e mpe r a t u r e h a s a s l i g h t l y l e s s i n f l u e n c e . B y c o mp a r i s o n , t h e i n f l u e n c e o f p r e c i p i t a t i o n i s a l mo s t n e g l i g i b l e ( C o r o n a t o , 1 9 9 9 ) , s imi l a r t o t h e i n f l u e n c e o f p r e cipitation on the w in d c hill mo d e l d e r i v e d b y N i x o n S m i t h ( 1 9 7 2 , cited in Donnelly, 1984) and used by Donnelly (1984) and Upreti ( 1 9 8 9 ) . The C o r o n a t o mo d e l a s s u me s t h a t t h e e w e i s l a mbi n g i n a n o p e n f i e l d , w i t h r a n d o m o r i e n t a ti o n t o w i n d r a i n a n d s u n ( M o u n t a n d B r o w n , 1 9 8 2 – f r o m w h o m t h e C o r o n a t o mo d e l w a s d e r i v e d ) . T h i s c a n i n t r o d u c e e r r o r , a s S y k es ( 1 9 8 2 ) o b s e r v e d t h a t t h e l a mb w a s p a r t i c u l a r l y a d e p t a t c r e a t i n g a mo r e f a v o u r a b l e mi c r o c l i ma t e t h a n i s des c r i b e d by t r a di t i on a l me t e o r o l o g y . La mb s c a n a c h i e v e t h i s b y s e e k i n g s h e l t e r a n d / o r b y h u d d l i n g w i t h t h e i r mot h e r / o t h e r l a mbs. B e cause of these be ha vi o u r a l a l t e r a t i o n s , me t e o r o l o g i c a l r e c o r d s l i k e t h o s e u s e d i n t h i s s t u d y o f t e n d e s c r i b e mo r e s e v e r e conditions than actually expe r i e n c e d b y t h e l am b , t h o u g h i t i s a s s u me d t h a t t h i s e f f e c t i s u n i f o r m a n d d o e s n o t i n f l u e n c e t h e validity of our results. S i re L ine V ariation in Ne onat al Lam b Cold M or t alit y S i r e l i n e v a r i a t i o n i n l a mb m or t a l i t y due t o c o l d e x p o s u r e w a s d e t e ct e d i n a l l o f t he t ri a l s u nt i l t h e d at a w a s c o r re c t e d for t h e i n f l u e n c e o f b i r t h w e i g h t a n d t h e p r edicted rate of heat loss using logistic regression. Sire line variation was not observed in either Borderdale trial after accounting for these fixed effects, though it w a s s t i l l o b s e r v e d w h e n t h e t r i a l s w e re c o mbi n e d i n t o o n e d a t a s et and analysed. Previous studies by Slee (1985), Slee et al. (1987) a n d Wol f f e t a l . ( 1 9 8 7 ) have detected evidence of sire line variation i n l a mb c o l d t o l e r a n c e , t h o u g h these studies used laboratory techniques as opposed to the field technique used here. Unfor t una t el y, t h e r e a p pe a r s t o b e n o p r e v i ou s w o r k t h a t u s e s fi e l d t r i a l s a n a l y si n g g e n e t i c v a r i a t i o n i n c o l d i n d u c e d l a mb m o r t a l i t y in conjunction with t h e c l i ma t e ( t h e c h a l l e n g e ) f o r c o mpa r i s o n w i t h t h e s e r e s ul t s . 40 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality The studies by S lee ( 1985) a nd Sle e e t a l. ( 1987) a lso f ound e v i d e n c e t h a t t h e r e ma y b e a ma j or g e n e i n f l u e n c i n g n o n - s h i v e r i n g t h e r mo g e n e s i s ( a n d h e n c e n e o n a t a l cold tolerance). In two of the t r i a l s a na l y s e d i n t hi s s t u d y , si r e- l i ne va r i a t i o n i n c o l d mo r t a l i t y i n d ependent of birth w eight wa s d e t e c t e d , s u g g e s t i n g t h a t o t h e r f a c t o r ( s ) o t h e r t h a n b ir t h w e i g h t w e r e r e s p o n s i b l e f o r t h e i n c r e a s e d n e o n a t a l c o l d t o l e r a n c e . L i n k i n g a l l of this toge the r c ould be the r e c e nt f i n d i n g t h a t v a r i a t io n i n t h e g e ne c o d i n g t h e 3 a d r en e r g i c r e c e pt o r ha s b e e n l i n k e d w i t h v ar i a t i o n i n c o l d t o l e r a nc e ( R . F o r r e s t , pe rs. comm. ) . T h e 3 a d r e n er gi c r ec e p t or i s a k ey c o mp o n e n t i n t h e c a t e c h o l a mi ne stimula tion of br own a dipose tissu e (Strosberg, 1997), which is the principle site of non-shivering t h e r mo g e n e s i s i n t h e n e w b o r n l a mb ( A l e x a n d e r & Wi l l i a ms 1 9 6 8 ) . T h e r e a r e ma n y r e a s o n s w h y s i r e l i n e v ar i at i o n i n l a mb m o r t a l i t y c a u s e d b y c o l d e x po s u r e w a s d e t e ct e d i n a l l t ri al s w i t h t h e e x c e p t i o n o f t h e t w o B o r d e r da l e t r i al s . T h e u s e o f f i e l d t r i a l s ma d e i t d i f f i c u l t t o s t a n da r d i s e t h e c o l d c h a l l e n g e e x pe r i e nc e d b y a l l l a mbs , p a r t i c u l a r l y a s t h e bi r t h d a t e s o f e a c h s i r e l i n e w e r e n o t e v e n l y d i s t r i b u t e d a c r o s s t h e l a mbi n g p e r i o d , l e a d i n g t o s o me s i r e l i n e s e x p er i e n ci n g w o r s e c o ndi t i o ns t ha n o t h e rs . T h e d a t a i n t h i s st udy w as partially standa r dise d for the strength of the cold c h allenge, through the u se of l o g i s t i c r e g r e s s i o n , w h i c h a l s o a d justed the data for varia tion in b i r t h w e i g h t . Th e s t r e n g t h o f t h e c o l d c h a l l e n g e mu s t a l s o b e s u f f i c ie n t t o c a u s e h i g h l a mb m o r t a l i t y . I n s i t ua t i o n s w h e r e t h e r e i s l o w mo r t a l i t y , t h e e f f e c t o f g e n e s d e t e r mi n i n g r e s i s t a n c e t o c l i ma t i c s t r e s s c a n b e ma s k e d a mo n g s t n o r ma l l a m b d e a t h a n d d e t e r mi n i n g v a r i a t i o n b e t w e e n s i r e l i n e s c a n b e c o me v e r y d i f f i c u l t ( H a l e y e t a l . 1987). F i e l d t r i al s a l s o ma k e i t v er y d i ffi c u l t t o l i mi t t he e ffe c t s o f m o t h e r i n g b e h a v i o u r a n d l a mb f e e d i n g a b i l i t y o n n e o n a t a l l a mb c o l d t o l e r a n c e . T h e s e f a c t o r s a r e m ai n l y ma t e r n a l a n d c o n f o u n d t h e r e s u l t s o f s i r e l i n e a n a l y s e s l i k e t h i s . Th e p r o g e n y g r o u p s i z e i n t h e 41 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality B o r d e r d a l e t ri a l s wa s s ma l l e r t h a n t h o se i n t h e Me a t Q u a l i t y a n d M e r i n o t r i a l s . T h i s w o u l d h a v e ma d e i t m o r e d i f f i c u l t t o d e t e c t a n y variation between sire lines and to show that this was a significant difference. T he overall population siz e of the Bor de r da le br e e d in NZ is c o n s i d e r a b l y s ma l l e r ( n = 1 5 0 0 - N Z S h e e p b r e e d e r s A s s o c i a t i o n , 2 0 0 0 ) t h a n t h e M e r i n o b r e e d ( n = 3 mi l l i o n – M e a t & Wo o l E c o n o mi c S e r v i c e o f N Z , 1 9 9 9 ) . T h i s p o t e n t i a l l y r e d u c e s t h e a mo u n t o f g e n e t i c v a r i a t i o n ( i n c l u d i n g v a r i a t io n i n c o l d t o l e r a n c e ) p r e s e n t i n t h e B o r d e r d a l e br e e d c o mpa r e d t o t h e M e r i n o bre e d o r t he M e a t Q u a l i t y pro g e n y , w h i c h a r e o f c r o s s b r e ds . T h e c o l d t o l e r a n c e o f t h e B o r d e r d a l e s i s c o n s e q u e n t l y m o r e likely to be negatively affected b y i n b r e e d i n g a s r e p o r t e d b y Galal (1981) and Lopez-Villalobos & Garrick (1999). T h e s e r e s e a r c h e r s h av e b o t h r e p or t e d t h a t t h e e f f e c t o f i n b r e e d i n g o n n e o n a t al l am b s u r v i v a l i s r e l a t i v e l y s ma l l a n d i n c o n s i s t e n t . Lopez-Villalobos & Garrick (1999) also found that the effect of inbreeding appeared t o d i r e c t l y i n f l u e n c e t h e l a mb s ’ survival and not act through the ewe. T h e d i a g n o s i s o f l a m b d e a t h d u e t o c o l d e x p o s u r e i s ma d e d i f f i c u l t be c a u s e o f t h e i nt e r ac t i o n s w i t h i n f e c t i on , b i r t h we i g h t , dystocia, starvation, birth injury and birth coat which can p r e d i s p o s e l a mb s t o d e a t h f r o m c o l d e x p o s u r e ( Al e x a n d e r , 1 9 8 4 ) . T h i s s t u d y u s e d a t e c h n i q u e t h a t ruled out other causes of death rather than actually diagnosing cold death. It is thought that while t h i s t e c h n i q u e ma y s l i g h t l y o v e r e s t i ma t e l a mb d e a t h s d u e t o c o l d e x p o s u r e i t i s s t i l l m o r e a c c ur a t e t h a n o t h e r me t h o d s . 42 Chapter 2: Sire Line Variation in Neonatal Lamb Mortality 2.5 Conclusions U n d e r c o n d i t i o ns t ha t w e r e r ep r e s e n t a t i v e o f t y p i c a l N e w Z e a l a n d f a r mi n g c o n d i t i o ns , t h i s s t u d y s h o w e d t h a t v a r i a t i o n b e t w e e n si r e s i n n eo n a t a l c o l d t o l er a n ce e x i st s w i t h i n a r an g e o f b r e eds, given sufficiently la r ge sir e g r o u p s a n d g e n e t i c v a r i a t i o n . T h i s s t u d y e s t a b l i s h e d t ha t fi e l d t r i a l s u t i l i s i n g s i mpl e d e a t h f r o m c o ld exposure diagnosis a r e suf f ic ie n t t o d e t ec t v a r i at i o n i n t h e p r e s e n c e o f a d e q u a t e c o l d c ha l l e n ge . T h i s c o u l d p r o v i d e a b a s i s f o r s e l e ct i o n fo r i mp r o v i n g t h e nu mb e r o f l a mb s s u r v i v i n g a n d t h u s r a ising the efficiency of la mb p r o d u c t i o n , p a r t i c u l a r l y i n f l o c k s s u f f e r i n g l a r g e l o s se s p r i or t o we a n i n g w h i c h i s a t t r a c t i v e b e c a u s e t h e c o s t s i n v o l v e d a r e s ma l l a n d n o n - r e c u r r e n t i n c o n t r a s t t o t h e a l t e r n a t i v e o f i mp r o v i n g n u t r i t i o n , shelter or incr e a s i n g t h e a mo u n t o f s h e p h e r d i n g ( H a l e y e t al . 1987). The variation between sires was l a r g e e n o u g h t o b e d e t e c t e d i n o n e g e n e r a t i o n , w h i c h me a n s t h a t l a r g e ge ne t i c ga i n s c a n b e m a d e o v e r o n e g e n e r a t i o n b y t h e s e l e c t i o n o f ‘ s u p e r i o r ’ p a r e n t s . T hi s i s e s p e c i a l l y r e l e va n t t o b r e e d i n g p r o g r a ms u t i l i s i n g t e r mi n a l s i r e s w h e r e b e n e f i t s n e e d t o b e exhibited by the progeny. Lamb birth weight had a large influence on lamb mortality due to cold exposure and was largely responsible for the influence of rank on lamb mortality due to cold exposure. Birth weight was also found to be correlated with the age of the ewe at lambing and lamb gender, though neither of these factors were found to influence lamb mortality due to cold exposure. These results suggest that further investigation into the genetic factors that influence neonatal lamb cold tolerance may be warranted. In particular, research relating to the detection of the possible major gene detected by Slee (1985) and Slee et al. (1987) (Chapter 3). 43 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth Chapter 3: The Role of Polymorphism in the 3 Adrenergic Receptor Gene in Cold Tolerance and Lean Muscle Growth Introduction Previous studies have i n d i ca t e d t h a t t he r e i s a m a j o r g e ne i n fl u e n c i ng n e o n a t al l a mb c o l d t o l er a n ce v i a t he c a t e c h ol ami n e s t i mu l a t i o n o f n o n - s h i v e r i n g t h e rmo g e n e s i s ( Si m p s o n & S l e e , 1 9 8 8 ; Slee & Simpson, 1991). The gene that codes the 3-adrenergic r e c e pt o r ( 3 - A R ) i s t h o u g h t t o b e a l i k e l y c a n d i d a t e f o r t h i s ma j o r g e n e a s 3 - A R s a r e t h o u g h t t o b e t h e ma j o r me d i a t o r s o f t h e l i p o l y t i c a n d t h e r mo g e n i c e f f e c t s o f h i g h c a t e c ho l a mi n e concentrations. V a r i a t i o n i n t h e g e n e c o d i n g t h e 3 AR ha s be e n f ound in h u ma n s . T h i s c o n si s t s o f a si n g l e a mi n o a c i d s ub s t i t ut i o n ( t h e t r p 6 4 a r g m u t a t i o n ) i n t h e 3 AR gene and has been associated with r a p i d w e i g h t g a i n , l o w me t a b o l i c r a t e a n d i mp r o v e d f e r t i l i t y ( S u s u l i c et al . , 1 9 9 5 ; A r n e r & L o n n q v i s t , 2 0 0 0 ) . F u r t h e r m o r e , i n r o d e n t 3-AR gene knockout models ther e i s a m a r k e d r e d u c t i o n i n the thermogenic response to cold and an increase in fat deposition ( S u s u l i c et al ., 1995). S i x a l l e l e s o f t h e g e n e c o d i n g t h e o v i n e 3-AR, which s e g r e g a t e i n a M e n d e l i a n f a s h i o n , h a v e b e e n i d e n t i f i e d b y F o r r e s t et a l . ( 2 0 0 1 ) . T h e s e a l l e l e s w e r e l i n k e d t o v a r i a t i o n i n l e a n mu s c l e g r ow th and although a cor r e la tion wit h n e o n a t a l l a mb c o l d t o l e r a n c e w a s n o t d e t e c t e d , t h i s w a s a t t r i b u te d t o i n s u f f i c i e n t c ol d c h a l l e n g e . F u r t h e r s t u d i e s h a v e r e v e a l e d a n a s s o cia t i o n i n on e s i r e l i ne b e t w e e n 3 - A R a l l el e s a n d n eo n a t a l l am b mor t a l i t y d u e t o c o l d 44 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth e x p o s u r e ( R . H . F o r r e s t pers. comm. ) . T h e l i n k b e t w e e n v a r i a t i o n i n t h e g e n e c o d i n g t h e o v i n e 3 - A R a n d l e a n mu s c l e g r o w t h i s p o t e n t i a l l y v e r y i mp o r t a n t t o t h e p r i me l a mb i n d u s t r y a s l a mb i s p e r c e i v e d b y c o n s u me r s a s b e i n g o v e r fa t a n d t h e r e f o r e i s l e s s v a l u a b l e ( H a mmo n d e t a l . , 1992) a nd the pr oduc tion of wa s t e f a t is i n e f f i c i e n t i n t e r ms o f t h e e n e rg y u s e d ( C a me r o n & B r a c k e n 1 9 9 2 ) . S e l e c t i o n f o r i mp r o v e d l e a n m u s cl e g r o w t h i n l a m b s h a s b e e n ma d e m o r e a c c u r a t e t h r o u g h t h e u s e o f u l t r a s o u nd s c a n n i ng . U l t r a s o u n d s c a n n i n g a l l o w s t h e q u a n t i t a t i v e me a s u r e me n t o f t i s s u e ( mu s c l e a n d f a t ) d e p t h s o v e r t h e 1 3 t h rib in live sheep and is now w i d e l y u s e d i n N e w Z e a l a n d , p a r t i c u l a r ly in te r mina l sir e br e e ds of s h e e p ( B i n n i e e t al ., 1 9 9 7 ) . G e n e t i c i m p r o v e me n t i n l e a n m u s c l e g r o w t h o f t e r mi n a l s i r e b r e e d s i s p e r ma n e n t , c u m u l a t i v e , r e l a t i v e l y c h e a p a n d c a n b e c o n c e n t r a t e d o n a n u me r i c a l l y s ma l l g r o u p o f a n i ma l s t h a t c a n h a v e a l a r g e g e n e t i c i n f l u e n c e u p o n o v e r a l l l a mb ( me a t ) p r o d u c t i o n ( S i m m , 1 9 8 7 ; C a me r o n & B r a c k e n , 1 9 9 2 ) . A study linking neonatal lamb cold tolerance to sire variation i n t h e g e n e c o d i n g t h e o v i n e 3- AR is de sc r ibe d in this c ha pte r . Th e l e a n mu s c l e g r o w t h w o r k o f F o r r e s t e t al . ( 2001) is a lso r e plic a te d u s i n g a t e r mi n a l s i r e b r e e d o f s heep (the Ha mpshire) and ultrasound s c a n n i n g . T h i s w a s i n t e n d e d t o t e s t t h e v i a b i l i t y o f t h e 3-AR gene a s a ma r k e r g e n e f or c o l d t o l e r a nce and/or lean muscle growth. 45 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth 3.1 Animals Investigated C o l d T o l e r a n c e : The flocks used to anal yse sir e line va r ia tion i n n e o n a t a l c o l d mor t a l i t y , d e s c r i b e d i n c h a p t e r 2 , w e r e a l s o u s e d t o a n a l y s e t he r o l e o f t h e 3 - A R i n n e o n a t a l l a mb c o l d t o l e r an c e . L e a n M u s c l e G r o wt h: T h r e e s i r e g r o u p s f r o m t h e B l u e v i e w H a mp s h i r e S t u d F l o c k w e r e u s e d t o a s s e s s t h e r o l e o f t h e 3 -AR in l e a n mus c l e g r o w t h i n l a mbs b e f o r e w e a n i n g . T h e l a mbs w e r e weaned on the first of Dece mber (2 0 0 0 ) w h e n t h e a v e rage age of the l a mbs w a s 8 9 d a y s . A f t e r l a m b i n g , t h e e w e s a n d l a mbs w e r e ma i n t a i n e d i n o n e m o b o n p e r e n n i a l r y e g r a s s ( L o l i u m p e r e n n e ) a nd c l o v e r ( Trifolium pratense & T r i f o l i u m r e p e n s ) p a s t u r e wi t h n o a r t i f i c i a l s u p p l e me n t s . 3.2 Methods Blood Collection, DNA Pu rification and Extraction Whole blood was collected from the sires involved in the cold t o l er a n c e t r i a l s a n d fr o m t h e p ro g e n y i n t h e H a m p s h i r e f l o c k t h a t w e r e me a s u r e d f o r l e a n mus c l e g r o w t h . T h i s w a s a c h i e v e d e i t h e r v i a v e n o p u n c t u r e o r b y t a k i n g a s ma l l n o t c h o u t o f t h e e a r o f t h e a n i ma l a n d c o l l e c t i n g s o me b l o o d o n t o F T A c a r ds ( Lif e Te c hnologie s, G a i t h e r s b u r g , U . S . A . ) . T h e b l o o d w a s t h e n a l l o we d t o d r y o n t h e c a r d a n d w a s s t o r e d i n d a r k n e s s a t r o om t e mp e r a t u r e u nt i l a n a l ys i s . The DNA on the FTA c a r d s w a s t h e n p u r i f i e d a c c o r d i n g t o ma n u f a c t u r e r ’ s i n st r u ct i o n s ( s e e A p p e n d i x 3 ) . A m p l i f i ca t i o n o f G e n e C o d i n g t h e 3 Adrenergic Receptor. From the purified DNA on the FTA cards, a 225 base pair r e g ion w ithin the single la r ge int r o n w hi c h i nt e rr u p t s t h e c o d i n g s e q u e n c e o f t h e o v i n e 3 - A R g e n e w a s a mp l i f i e d u s i n g t h e P o l y me r a s e C h a i n R e a c t i o n ( P C R ) . 46 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth T h e p r i me r s u s e d i n t h e P C R w e r e d e s i g n e d f r o m t h e o v i n e 3 AR gene sequence (Forrest & Hickford, 2000; GenBank accession n o . A F 1 0 9 9 2 8 ) . T h e p r i me r s e q u e n c e s u s e d w e r e a s f o l l o w s : F o r w a r d p r i me r 5 '- T C T T A C C ATCACGCGAGCT GGCT-3 ' and r e v e r se p r i me r 5 '- A C T C C A A C C C G A C C C G C T T C - 3 '. F o r e a c h s a mpl e , a 2 0 L r e a c t i o n c o n t a i n i n g 1 PCR buffer and 1 U of Taq p o l y me r a s e ( Q i a g e n , G mB H , H i l d e n , G e r ma n y ) , 1 0 0 M d N T P s , 2 5 0 nM o f e a c h p r i me r a n d 1 0 0 n g o f o v i n e g e n o mi c D N A ( s t a n d a r d s ) o r o n e F T A p u n c h e s ( s a mp l e s ) w e r e a mp l i f i e d u s i n g 3 0 c y c l e s o f 9 4 C f o r 3 0 s ( d e n a t u r a t i o n ) , 6 5C f o r 3 0 s ( a n n e a l i n g ) , a n d 7 2 C for 30s ( e longation). T he P C R pr oduc ts we re then confirme d on a 1% a g a r o s e ge l i n 1 T B E ( 8 9 mM T r i s b o r a t e , 8 9 mM B o r i c a c i d & 2 mM Na 2 EDT A (pH 8.0)), whic h wa s r un f or 30 mi nute s a t 5 volts p e r c e nt i me t r e . Detection of 3 Adrenergic Recept or Pol ymorphism. PC R -Single S trand Conf or ma tion Polymorphism (PCR-SSCP) w a s u s e d t o s c r e e n f o r p o l y m o r p h i s m a t t h e o v i n e 3 -AR locus using a me t h o d s i mi l a r t o F o r r e s t e t al . ( 2001) . A 3 L a l i q u o t o f e a c h p r o d u c t wa s mi x e d w i t h 1 4 L o f l o a d i n g d y e ( 9 5 % f o r ma mi d e , 2 0 mM E D T A , 0 . 0 5 % b r o mo p h e n o l b l u e , 0 . 0 5 % x y l e n e c y a n o l ) , denatured for 5 mi n at 95 C a nd the n a pplie d to a 11% p o l y a c r y l a mi d e : b i s a c r y l a mi d e ( 3 7 . 5 : 1 ) g e l ( 1 6 1 8 c m, 1 . 0 m m s p a c e r s , 20 w e l l c om b ) c o n t a i n i n g 1 % f o r ma mi d e a n d 2 % g l y c e r ol . T h e s a mp l e s w e r e s e p a r a t e d a t 2 2 0 V f o r 1 7 h o u r s u s i n g a Pr o t e a n I I c e l l ( B i o R a d , H e r c u l e s C A , U S A ) . E l e c t r o p h o r e s i s w a s p e r f o r me d i n a 1 0C r o o m w i t h 1 2 C wa te r c ir c ula ting thr ough the c e ll c or e . Gels w e r e s i l v e r - s t a i n e d a c c o r di n g t o t h e me t h o d o f S a n g u i n e t t i e t a l . ( 1 9 9 4 ) a n d t h e b a n d i n g p a t t e r n s c o mpa r e d to the sta ndards identified b y F o r r e s t e t a l . (2001). These standards wer e d e r i v e d f r o m M e r i n o a n d B o r d e r d a l e a n i ma l s i d e ntified by PCR-SSCP as being h o mo z y g o u s f o r e a c h o f t h e 3 - A R a l l el e s . 47 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth DNA Se q uencing and Analysis N o a n i ma l s f r o m t h e H a mps h i r e b r e e d h ad p r e v i o us l y b e e n t y p e d f o r t h e 3 - A R g e n e , s o f r o m 4 a n i ma l s i d e n t i f i e d b y P C R SSCP as being homozygous, the 225bp region of the 3-AR intron w a s s e q u e n c e d t o c on f i r m a l l e l e i d e nt i t y . T h e s eq u e n c e f o r e a c h f r a g me n t w a s d e t e r mi n e d d i r e c t l y from PCR products. Se quencing was performe d by the Wa ikato DNA Se q u e n c i n g F a c i l i t y , U n i v e r s i t y of Wa ikato, New Ze aland. Electroni c c o p i e s o f t h e s e q u e n c e s w e r e e d i t e d us i n g t h e p r i n t e d e l e c t r o p h e ro g r a ms . M u l t i - a l l e l e a l i g n me n t s (DNA) we re carried out using DNAM AN™ (Lynnon BioSoft, version 4.0). Cold Mortalit y & Climate Data T h e c o l d m o r t a l i t y a n d c l i ma t e d a t a u se d i n t hi s s e c t i o n w a s t h e s a me a s t h a t u s e d t o a n a l y s e s i r e l i n e va r i at i o n i n n e o n a t al c o l d mortality (Chapter 2). Measurement of Lamb Lean Muscle Growth T h e l a mb s w e r e w e i g h e d a t b i r t h a n d t h e n a g a i n a t w e a n i n g , w hen ultrasound scannin g a lso took p l a c e . L a mb g r o w t h r a t e w a s c a l c ul a t ed b y t h e fol l o w i n g eq u a t i o n: G r o w t h R a t e = We a n i n g w e i g h t ( k g ) – b i r t h w e i g h t ( k g ) Age a t we a ning ( da ys) U l t r a s o u n d s c a n n i n g u s i n g a n Aloka SSD 210DX Echo Ca mera ( A l o k a C o . L i mi t e d , T o k y o , J a p a n ) w a s u s e d t o me a s u r e t i s s u e d e p t h s ( f a t a n d mu s c l e ) a b o v e t h e 1 3 t h r i b o f e a c h l a mb . T h e a g e o f t h e e w e , b i r t h r a n k a n d l a mb g e n d er w a s a l s o r e cor d e d a t bi r t h . 48 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth S t a t i s t i cal A n a l ysi s C o l d T o l e r a n c e : T he c o l d mo r t al i t y a nd c l i ma t e d a t a fr o m c h a p t e r 2 w a s c o mb i n e d i nt o o n e d a t a s e t a n d a n a l y s e d i n SPSS (Version 10.0, SPSS Incorporated, Chicago). Th e p r e d ic t or v a r ia b l es i d e n t i f i e d i n c h a p t e r 2 a s i n f l u en c i n g l a mb m o r t a l i t y d u e t o c o l d e x p o s u r e ( b i r t h w e i g h t , c l i ma t e , s i r e ) a n d t h e c o r r e s p o n d i n g s i r e 3 A R g e n o t y p e f o r e a c h l a mb w a s a n a l ys e d a g a i n st e a c h o t h e r u s i n g chi-square, 1-way ANOVA, correlati on a nd T- te st te c hnique s to q u a n t i f y t h e r e l a t i o n s h i p b e t w e e n the m. Logistic r e gr e ssion wa s u s e d t o c a l c u l a t e t he c o mbi n e d e f f e c t s o f s i r e g e n o t y p e , b i r t h w e i g h t , t h e p r e d i c t e d r a t e o f he a t l o s s a n d t r i a l u p o n c o l d i n d u c e d l a mb mor t a l i t y . T h e a c c u r a c y o f t h e l o gi s t i c r e gr e s s i o n mod e l s w a s c a l c ul a t ed i n a s i mi l a r ma n n e r t o t h at d es c r i b e d i n c h a p t er 2. L e a n M u s c l e G r o wt h : T h e e f f e c t o f s i r e , d a m a g e , l a mb g e n d e r , b i r t h r a n k a n d l a mb 3 - AR ge notype we r e a na lyse d a ga inst t h e c o mpo n e n t s o f l e a n mus c l e g r owth ( bir th we ight, gr owth r a te , m u s c l e a n d f a t d e p t h ) u s i n g c h i - squa r e ( c a te gor ic a l va r ia ble s) a nd 1 - w a y A N O V A ( c o n t i n u o u s v a r i a bl e s ) me t h o d o l o g i e s i n SPSS. F r o m t h e s e a n a l y se s, t h e v a r i a b l e s t ha t h a d a s i g ni f i c a n t i n f l u e n c e u p o n l e a n mu s c l e g r o w t h w e r e e s t ablished. The relationship between t h e s e v a r i a b l e s w a s t h e n q u a nt i f i e d u s i n g c h i - s q u a r e , 1 - wa y A N O V A , correlation and inde pe nde nt s a mpl e s T - t e st t ec hn i q u e s . T h o s e v a r i a b l e s w i t h n o s t r o n g i n t errelationship(s) were retained for s u b s e q u e n t a n a l y s i s a l o n g w i t h t h e mos t significant variable of any r e l a t e d p a i r i n g . C o m p a r i s o n o f t h e mo s t c o m mo n a l l e l e c o mb i n a t i o n s ( n > 1 0 ) u p o n b i r t h w e ig h t , g r o w t h r a t e , mu s c l e d e p t h a n d f a t d e p t h w a s a n a l y s e d u s in g a G e n e r a l Li n e a r M o d e l ( G L M ) w h i c h i n c l u d e d t h e p r e d i c t o r v ar i a b l e s i d e n t i f i e d a b o v e a s i n f l u e n c i n g l e a n mu s c l e g r o wt h . 49 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth 3.3 Results Lamb Mortality due to Cold Exposure P C R - S S C P a n a l y s i s o f t h e 1 5 s i r e s ( f r om f o u r t r i a l s ) r e v e al e d six different alleles in ten differ e n t c o m b i n a t i o ns ( T a b l e 4) . T a b l e 4 : 3 - A R g e n o t y p e o f a l l t h e s i r e s u s e d i n t h e c o l d t o l e r a nc e study. Flock Year Sire 3-AR genotype Number of Progeny Borderdale 1999 16-95 AC 59 1999 82-95 AA 72 1999 25-94 BF 60 1999 4-97 AA 76 2000 226-98 AF 166 2000 263-98 AB 63 Meat 2000 8585 DE 89 Quality 2000 122-98 EF 157 2000 8512 EF 150 2000 238-97 AA 97 2000 8255 AE 121 2000 159-97 AC 126 2000 GLD26 CC 54 2000 R356 DE 51 2000 EN132 CD 43 Merino L o g i s t i c re g r e s si o n a n a l y si s of l a mb m o r t al i t y d ue t o c o l d exposure and the sire 3-AR genotype revealed that there was v a r i a t i o n b e t w e e n s i r e 3 - AR ge notype s ( p= 0.001) . Chisqua r e a n a l y s i s s h o w e d t h a t l a mbs f r o m s i r e s w i t h t h e C D 3 - A R g e n o t y p e h a d t h e h i g h e s t mor t a l i t y a n d l amb s f r o m s i r e s w i t h t h e B F 3 -AR g e n o t y p e h a d t h e h i g h e s t mor t a l i t y ( Fi g u r e 1 4 ) . 50 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth Figure 14: T h e u n c o r r e c t e d a m o u n t o f l amb mor t a l i t y d u e t o c o l d e x p o s u r e f o r e a c h s i r e 3-AR genotype. Percentages that a r e s i g n i f i c a n t l y d i f f e r e n t (p<0.05) are represented by t h e d i f f e r e n t a l p ha b e t i c s u b sc ri pt s a t t h e t o p o f e a c h b a r . Accuracy of the Logistic Regression Model Predicting Lamb Mortality The accuracy of the logistic re g r e s si o n m o d e l u s ed t o a n a l ys e t h e v a ri a t i o n b e t w ee n s i r e g en o t y p e s i n l a mb m o r t al i t y due t o c o l d exposure was 0.1%, though there was very little error in the logistic r e gression model predic tion of whi c h l a m b s w o u l d d i e f o r m c o l d e x p o s u r e . T h e e r r o r w a s c o n f i n e d ma i n l y t o t h e p r e d i c t i o n o f w h i c h l a mbs w o u l d s u r v i ve c o l d e x pos u r e ( 1 46 s u c h e r r o r s c o mpa r e d t o 6 in the prediction of which lambs would die from cold exposure). T h i s w a s t h e r e s u l t o f mor e l am b s d y i n g t h a n w a s e x p e c t e d a f t e r a n a l y si n g t h e c o mbi n e d e f f e c t s of sir e , bir th we ight a nd the predicted rate of heatloss. 51 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth Lean Muscle Growth U n i v a r i a t e a n a l y si s r e v e al e d s i r e l i n e v a r i a t i o n i n l a mb g r o w t h r a t e ( p = 0 . 0 0 4 ) b u t n o t i n b i r t h weight (p=0.416), muscle depth (p=0.061) or in fat depth (p=0.888). Sire pair comparison revealed t h a t t h e p r o g e n y o f 3 2 1 / 9 8 h a d f a s t e r growth rates than the progeny o f either 984/97 (p=0.002) a nd 309/ 9 8 ( p = 0 . 0 0 6 - T a b l e 5 ) . Wh e n t h e d a t a w a s c o r r e c t e d f o r t h e a g e o f t h e d a m, b i r t h r a n k a n d l a mb gender using a general linear model, sire line variation was only de t e ct e d in gr owt h r a t e (p=0.046), though a t r e n d wa s obs e r ve d i n mus c l e dept h (p=0.096). No va r i at i on be t we e n si r e l i ne s wa s o b s e r v e d i n e it h e r b i r t h wei gh t (p=0.448) o r fa t d e p t h (p=0.906) w h e n t h e d a t a w a s c o r r e c t e d u s i n g t h e g e n e r a l l i n e a r mo d e l . T a b l e 5 : S i r e l i n e v a r i a t i o n i n l e a n mu s c l e g r o w t h . S i g n i f i c a n t l y d i f f e r e n t me a n s ( p < 0 . 0 5 ) i n e a c h c o l u mn a r e r e p r e s e n t e d by different alphabetic subscripts. Sire Sire Genotype 309/98 321/98 984/97 BE EE BE Number of Progeny 19 11 26 Birth Weight (kg) 4.890.54 5.220.92 5.190.96 Average Growth Muscle Rate Depth (kg/day) (mm) 0.3450.07a 23.532.70 0.4260.06b 25.631.69 0.3340.08a 24.192.20 Fat Depth (mm) 3.841.89 4.091.22 3.961.43 PC R -SS C P analysis of the 3 - A R g e n e r e v e a l e d t h a t 4 d i f f e r e n t a l l el e s i nh e r i t e d i n t y p i c al Me n d e l i a n fa s h i o n w er e p r e se n t i n t h e p r o g e n y o f t h e l e a n m u s c l e t r i a l (Figure 15). Of these 4 alleles, a l l el e s E a n d B w e r e i n h e ri t ed fr o m t h e s i r es a nd a l l el e s A a n d C w e r e o b s e r v e d i n h e t e r o z y g o u s p r o g e n y ( s o me o f w h i c h a r e n o t shown in Figure 15). The overall fr e que nc y of the a lle le s A, B, C and E in the Ha mpshire flock was 0.02, 0.30, 0.05 and 0.63 r e s p e c t i v e l y , w h i l e t h e g e n o t y p e f r e que nc ie s we r e 0.414 ( EB) , 0.36 0 (EE), 0.108 (CE), 0.072 (BB), 0.018 (AB) and 0.018 (AE). 52 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth Animal: Alleles: A Standards B C D E Sire Progeny . F BE AB BE EE EE BB BE BB BE BE EE EE BB BE Figure 15: P C R - S S C P g e l s c o n t a i n i n g t h e o v i n e 3 A R a l l e l e s t a n d a r d s a n d s o me o f t h e p rogeny of 984/97. The genotype of t w i n s i s un d e r l i n e d s o t h a t t h e i n h e r i t a n c e c a n b e o b s e r v e d . Sequence analysis of the homozygous 3 AR genotypes present i n t h e l e an mus c l e t r i al ( T a b l e 7 ) r e ve al e d t h at t he s e q u e n ce s o f a l l el e s E a n d B w e r e i d e n t i c al t o t he s t a n d a r d s i d e nt i fi e d b y F o r r e s t e t a l . (2001). The effect of i n h e r i t i n g e i t h e r o f t h e s e a l l e l e s ( i . e . B E v s . E E – t h e o n l y g e n o t y p e s p r e s e nt i n mo r e t h a n 6 p r o g e n y ) u p o n t h e c o mp o n e n t s o f l e a n mu s c l e g r o w t h w a s a n a l y s e d . N o d i f f e r e n c e ( p < 0 . 0 5 ) b e t w e e n w h i c h a l l e l e w a s inhe r ite d wa s obse r ve d in bir th w eight, grow th rate, mus c le de pth o r f a t d e p t h e v e n w h e n t h e d a t a w a s c o r r e c t e d f o r t h e a g e o f t h e d a m, b i r t h r a n k a n d l a mb g e n d e r u s i n g a g e n e r a l l i n e a r mo d e l ( T a b l e 6 ) . T a b l e 6 : V a r i a t i o n b e t w e e n 3 A R g e n o t y p e s i n l e a n mu s c l e g r o w t h . T h e s t a n da r d d e v i a t i o n f o r e a c h me a s u r e me n t i s s h o w n . 3 AR Genotype Number of Progeny BE EE Overall 22 20 42 Birth Weight (kg) 5.080.95 5.170.78 5.120.86 Average Growth Muscle Rate Depth (kg/day) (mm) 0.3520.090 24.452.36 0.3700.071 24.502.48 0.3610.080 24.482.39 Fat Depth (mm) 3.771.57 4.101.48 3.931.52 53 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth T a b l e 7 : DNA sequ ences of the ovine 3 - AR a lle le sta nda r ds a nd t h e t w o m o s t c o m m o n a l l el e s p r e s e n t i n t h e l ea n mus c l e g r o w t h t ri a l Allele Allele 560-00 566-00 Allele Allele Allele 321-98 554-00 Allele A TCTTACCATCACGCGAGCTGGCTTTGACTTGCCGAGACTAGAGGGCAACC 50 B -------------------------------------------------- 50 -------------------------------------------------- 50 -------------------------------------------------- 50 C -------------------------------------------------- 50 D -------------------------------------------------- 50 E --------------------------------T---------.------- 49 --------------------------------T---------.------- 49 --------------------------------T---------.------- 49 F -------------------------------------------------- 50 Allele Allele 560-00 566-00 Allele Allele Allele 321-98 554-00 Allele A CCCCATTCCCTGCCCCACCCCATCCCCGCGCCAGTCCCCAAGCCTTCGGG 100 B -------------------------------------------------- 100 -------------------------------------------------- 100 -------------------------------------------------- 100 C -------------------------------------------------- 100 D ------C-------------------------C----------------- 100 E -------------------------------------------------- 99 -------------------------------------------------- 99 -------------------------------------------------- 99 F ------------T------------------------------------- 100 Allele Allele 560-00 566-00 Allele Allele Allele 321-98 554-00 Allele A CTCAGTTCTGGTTTCTTTGGAAAGTCTGATAGCCCCGAAGGTGAGGATTC 150 B -------------------------------------------------- 150 -------------------------------------------------- 150 -------------------------------------------------- 150 C -------------------------------------------------- 150 D -------------------------------------------------- 150 E -------------------------------------------------- 149 -------------------------------------------------- 149 -------------------------------------------------- 149 F -------------------------------------------------- 150 Allele Allele 560-00 566-00 Allele Allele Allele 321-98 554-00 Allele A GCTTCCGGAATGAAGGCTAGCGGGGCTGAGGAAGCTGCGAGTGCGAATTC 200 B ---------------------A---------------T------------ 200 ---------------------A---------------T------------ 200 ---------------------A---------------T------------ 200 C ---------------------A---------------T------------ 200 D ---------------------C---------------------------- 200 E ---------------------A---------------T------------ 199 ---------------------A---------------T------------ 199 ---------------------A---------------T------------ 199 F ---------------------A---------------T------------ 200 Allele Allele 560-00 566-00 Allele Allele Allele 321-98 554-00 Allele A B C D E F TTCCCCAGTAGGAAGCGGGTCGGGTTGGAGT --A-T---------------------------A-T---------------------------A-T-----------------------------T-----------------------------------------------------------T-----------------------------T-----------------------------T-----------------------------T-------------------------- 231 231 230 230 231 231 230 230 230 231 54 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth M a l e l a m b s w e r e i de n t i fi e d as h a v i n g h i g h e r g r o w t h r a t e s t h a n f e ma l e l a m b s ( p = 0 . 0 0 7 ) a n d a t r e n d t h a t l a mbs b o r n t o o l d e r e w e s a l s o grew faster (p=0.062) wa s detected. No diffe rence (p<0.05) b e t w e e n ma l e s a n d f e ma l e s o r b e t w een ewes of different ages was o b s e r v e d i n b i r t h w e i g h t , mu scle depth or fat depth. 3.4 Discussion Lamb Mortality due to Cold Exposure V a r i a t i o n b e t w e e n t h e s i r e 3 A R g e n o t y p e s i n l am b mo r t a l i t y due to cold exposure was observed until the data was corrected for the influence of birth weight and the predicted rate of heat loss. S i r e g e n o t y p e v a r i a t i o n w a s n o t o b s e r ve d i n t h e B o r d e r d a l e t ri a l a f t e r a c c ou n t i n g f o r t h e s e f i xe d e f fe c t s , t h o u g h i t w a s s t i l l o b s e r v e d w h e n t h e c o mbi n e d d a t a s e t w a s a n a l ys e d . T h e a c c u r a c y o f t h i s a n a l y si s i s q u e s t i o n a b l e , a s t h e ma j o r i t y o f t h e s i r e 3 genotypes w er e only r e pr e se nte d by a single sir e , thus ma k i n g i t i mp o s s i b l e t o d i f f e r e n t i a t e t he e f f e c t s o f e a c h s i r e 3 g e n o t y p e f r o m g e n e r a l s i r e e f f e c t s . The environment would not have been standardised for the genotypes that were only represented by a s i n g l e s i r e , a s t h e y o n l y r e p r e s e n t e d one trial out of four. Therefore, t h e v a r i a t i o n b e t w e e n s o me o f t h e s i r e g e n o t y p e s i n l a mb m o r t a l i t y d u e to cold exposure could ha ve be e n due to va r ia tion be twe e n trials. P r e v i o u s w o r k b y F o r r e s t e t a l . ( 2 0 0 1 ) h a s f o u n d t h a t l a mb d e a t h s o c c u r r i n g wi t h i n t h e f i r s t week of birth could not be a t t r i b u t e d t o t h e i nh e r it a n c e o f a p a r t i c u l a r 3 - a d r e n e r gi c r e c e pt o r a l l e l e , t h ou g h t h i s w a s t h o u g h t t o b e be c a u s e t he r e w e r e i n s u f f i c i e n t cold deaths to ascertain the affect of 3 A R a l l e l e s o n c o l d s u r v i v al ( F o r r e st e t a l . 2 0 0 1 ) . T h i s w o r k u t i l i se d s e g r e g a t i o n a n a l y s i s , w h i c h i s a mu c h mo r e p o w e r f u l e x p er i me n t a l d e s i g n t h a n t h a t u s e d 55 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth h e r e , t h o u g h i t r e q u i r e s t h e g e n o t y p e of a ll of the pr oge ny ( de a d a n d a l i v e ) f r o m h e t e r o z y g o u s s i r e s t o be recorded. Se gr egation analysis me a s u r e s t h e v a r i a t i o n b e t w e e n t he t wo a l l e l e s i n h e r i t e d f r o m a h e t e r o z y g o u s s i r e . T h e l o g i s t i c r e g r e s s i o n mo d e l s w e r e r e a s o n a b l y a c c u r a t e a t p r e di c t i n g l a mb m o r t a li t y d u e t o c o l d e x p o s u r e , t h o u g h s i mi l a r t o t h e l o g i s t i c r e g r e s s i o n mo d e l s d e s c r i b e d i n c h a p t e r 2 , l a mb mor t a l i t y d u e t o c o l d e x p o s u re w as p r e d i ct ed b e t t er t h a n l a mb survival. P C R - S S C P a n a l y s i s o f t h e 1 5 s i r e s ( f r om 4 t r i a l s) r e v ea l e d t h a t a l l o f t h e s i x 3 - A R a l l el e s pre v i o u s l y i d e n t i fi e d b y F o r r e s t e t a l . ( 2 0 0 1 ) w e r e p r e s e n t i n t h e l e a n mu s cl e g r o w t h t r i a l . T h e s i x a l l e l e s w ere arranged in 10 diffe r e nt genotype s, with AA be ing the most c o m m o n g e n o t y p e ( fo u n d i n 3 s i r e s ) a n d a l l e l e C t h e o n l y a l l e l e f o u n d i n a l l t r i a l s . Th e r e w e r e 4 d if f e r e n t a l l e l e s i d e n t i f i e d i n t h e s i r e s o f t he B o r d e r da l e t r i al s ( b o t h y e a r s ) , 5 i n t h e M e a t Qu a l i t y t r i a l a n d 3 i n t h e M e r i n o . Thi s d i f f e r e n c e i n g e n e t i c v a r i a t i o n b e t w e e n t r i a l s i s e xp e c t e d c on s i de r i n g t h e n u mb e r o f s i r e s i n e a c h t r i a l a n d r e l a t i v e p o p u l a t i o n s i z e s of each breed in New Ze aland. T h e overall population s iz e of the Bor de r da le br e e d in NZ is c o n s i d er ab l y s ma l l e r t h a n t he M er ino br e e d, whic h pote ntia lly ha s l a r g e i mp l i c a t i o n s u p o n t h e a mo u n t o f v a r i a t i o n p r e s e n t i n 3 -AR l o c u s w i t h i n t h e se b r e e d s . The Me a t Q u a l i t y t ri a l i s ma d e u p o f c r o s s b r e d p r o g e n y , w h i c h a r e c o n s e q u en t l y mo r e g e n e t i c a l l y d i v e r s e than pure-breds. Lean Muscle Growth V a r i a t i o n b e t w e e n s i r e l i n e s w a s f o u n d i n l a mb g r o w t h r a t e , b u t n o t i n b i r t h w e i g h t , m u s c l e d e p t h o r i n fa t d e p t h w h e n a u n i v a r i a t e a n a l y si s of t h e d a t a w a s c a r r i ed o u t . Wh e n t h e d a t a w a s c o r r e c t e d f o r t h e a g e o f t h e d a m, r a n k a n d l a mb g e n d e r u s i n g a g e n er a l l i n e ar m o d e l , s i re l i n e va r i a t i o n w a s s t i l l o n l y d e t e c t e d i n g r o w t h r a t e a n d not in birth weight, muscle depth or fat depth. Previous studies have 56 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth f o u n d g e n e t i c v a r i a t i o n i n l e a n mus c l e g r o w t h i n c l u d i n g s i r e l i n e v a r i a t i o n i n b i r t h w e i g h t o b s e r v e d i n t he B o r d e r da l e a n d Me a t Q u a l i t y t ri a l s i n t h e l a mb mor t a l i t y st u dy . B r e e d i n g p r o g r ams b y S i m m a n d D i n g w a l l ( 1 9 8 9 ) , C a me r o n a n d B r a c k e n ( 1 9 9 2 ) a n d C l a r k e e t a l . (1998) established tha t t h e r e i s si g n i f i c a nt g e n e t i c v a r i a t i o n i n g r o w t h r a t e , mu s c l e d e p t h a n d f a t d e p t h ( me a s u r e d u s i n g u l t r a s o u n d s c a n n i n g ) f o r p r o g r e s s t o ma d e b y s e l e c t i n g f o r t h e s e t r a i t s . Heritabilities of between 0.20 and 0.30 for growth rate (reviewed in P a rratt and Simm, 1987; Cr oston e t al . 1983), between 0.22 and 0 . 43 for m uscle depth an d be twe e n 0.16 a nd 0.35 f or f a t de pth ha ve b e e n e s t i ma t e d i n t y p i c a l t e r mi n a l s i r e b r e e d s ( Su f f o l k s - S i m m a n d D i n g w a l l , 1 9 8 9 ; T e x e l O x f o r d c r o s s b r e d s - C a me r o n a n d B r a c k e n , 1 9 9 2 a n d L a n d c o r p “ L a mb S u p r e me ” c o m p o s i t e s - C l a r k e e t a l . 1998). P C R -SS C P analysis of the 3 - A R g e n e r e v e a l e d t h a t 4 d i f f e r e n t a l l el e s i nh e r i t e d i n t y p i c al Me n d e l i a n fa s h i o n w er e p r e se n t i n t h e l e a n mus c l e t r i a l a nd s e q u e n c e a n a lysis r e ve a le d tha t the se que nc e s o f a l l e l es E a n d B w e r e i de n t i c a l t o t h e s t a n d a r d s i d e n t i f i e d b y Forrest et al. (2001). The overall frequency of the alleles was quite different to that observed by Forrest et al. (2001) in 25 unrelated New Zealand Merino rams . The high frequencies of the B and E a l l el e s i s n o t s u r p ris i n g a s t he fl oc k is r e a sona bly inte r r e la te d a nd these were the only alleles detected in the sires. The effect of inheriting the B allele versus inheriting an E a l lele (i.e. B E vs. E E ) o n the var i o u s c o mp o n e n t s o f l e a n m u s c l e g r o w t h w a s a n a l y s e d . N o d i f f e r e nc e ( p > 0 . 0 5 ) b e t w e e n w h i c h a l l e l e w as inherited w as observ e d in bi r t h w e i g h t , g r o wt h r a t e , m u s c l e d e p t h o r fa t d e p t h e v e n w h e n t h e d a t a w a s c o r r e c t e d f o r t h e a g e o f t h e d a m, b i r t h r a n k a n d l a mb g en d e r u s i n g a g e n e r al l i n e ar m o d e l . Age of da m, birth rank and lamb g e n d e r a r e a l l fa c t o r s t h a t h a v e b e en identified as influenc ing l e a n mu s c l e g r o wt h ( A l e x a n d e r , 1974). In this study, ma le lambs we r e f o u n d t o g r o w f a s t e r a n d a 57 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth t r e n d w a s d e t e c t e d s h o w i n g t h a t l ambs did likewise. No effe ct due to birth rank was found and none of the factors were found to i n f l u e n c e m u s c l e a n d f a t d e p t h s . I t w a sn’ t p o s si bl e t o c or r e c t m u s c l e d e p t h a n d f a t d e p t h f o r w e ig h t i n t h e g e n e r a l l i n e a r m o d e l , a s t h e c orr e l at i o n be t w e e n t he t r ai t s wa s t o o h i gh . T h e l a c k o f r e s p o n s e t o v a r i a t i o n i n 3 -AR genotype in this s t u d y c o n t r a s t s w i t h t h e f i n d i n g s o f F o r r e s t et al. ( 2 0 0 1 ) w h e r e segegration analysis wi t h i n o n e B o r d e r d a l e s i r e l i n e ( g e n o t y p e A C ) e s t a bl i s h ed t h a t t h e i n h e ri t a n ce o f a p a rt i c ul a r 3 - A R a l l e l e ( A ) w a s a s s o c i a t e d w i t h d e c r e a s e d t i s su e d e p t h o v e r t h e t h i r t e e n t h r i b ( G R ) , c o mp a r e d t o p r o g e n y t h a t i n h e r i t e d t h e o t h e r si r e a l l el e ( C ) . T h e G R me a s u r e m e n t u s e d by F o r r e s t e t a l . ( 2001) wa s ba se d upon a s u b j e c t i v e me a s u r e me n t ma d e b y f e e l ing the a mount of f a t c ove r ing t h e mus c l e o n a l a m b ’ s r i b . F o r r e s t e t a l . (2001) also found that the i n h e r i t a n c e o f a p a r t i c u l a r s i r e a l l ele did not a f f e c t bir th we ight or growth rate in either the Merino or Borderdale lines, nor did it a f f e c t G R a t w e a n i ng i n t h e M e r in o l i n e s . T h e u s e o f s e g r e g a t i o n a n a l y si s w a s n o t p o s s i b l e i n t hi s st u dy b e c a u s e t h e n u mb e r o f progeny from the heterozygous sires was not sufficient. G e n e s w i t h ma j o r e f f e c t s ( r e s p o n s i bl e for mor e t h a n 2 0 % o f t h e o b s e r v e d p h e n o t y p e ) h a v e b e e n p r e vi o us l y i d e nt i fi e d i n s he e p . T h ese genes have m ainly be e n r e str ic te d to those inf lue nc ing fecundity (Booroola (Fec B ) , I n v e r d a l e ( F e c X ) a nd Ja va ne se ( Fe c J )), t h o u g h t he C a l l i p yge a n d C a r w e l l g e ne s a r e be l i e v e d t o be t h e f i r st ma j o r g e n e s d i s c o v e r e d i n s h e e p t h a t i n f l u e n c e l e a n mu s c l e g r o w t h . T h e C a l l i p y g e a n d C a r w e l l g e n e s a p p ea r t o c a u s e ma r k e d i n c r e a s e s i n mus c l e ma s s a n d a d e c r e a s e i n o v e ral l c ar c a ss fa t n e s s . G e n e s w i t h s i mi l a r m a j o r e f f e c t s h a v e a l r e a d y b e e n i d e n t i f i e d i n c a t t l e a n d p i g s ( F a h my , 1 9 9 9 ) . 58 Chapter 3: T h e R o l e o f 3 A d r e n e r g i c R e c e p t o r G e n e P o l y m o r p h i s m i n C o l d Tolerance and Lean Muscle Growth T h e e w e s i n t h e l e an mus c l e g r o w t h t ri a l w e r e e xp o s e d t o t o x o p l a s mo s a g o n d i i (Appendix 1) during p r e g n a n c y . T h i s h a d a n e gative effect on the numbe r of la mbs pr e se nt a t we a ning a nd c o nsequently reduced the numbe r of l a m b s me a s u r e d f o r l e a n mus c l e g r o w t h . T h i s w o u l d h a v e ma d e i t mo r e d i f f i c u l t t o d e t e c t a n y v a r i a t i o n b e t w e e n l a mb g e n o t y p e s a nd to show tha t this wa s a significant difference. It is possible that the variation in genotypes ma y h a v e a l s o b e e n r e d u c e d b y t h e s e d e a t h s . O n e a v e n u e o f r e s e a r c h n o t p u r s u e d h e r e w a s t h e c o mp a r i s o n o f 3 - A R g e n o t y p e s w i t h e s t i ma t e d b r e e d i n g v a l u e s ( E B V s ) f o r a n y o f t h e t r a i t s s t u d i e d . Whi l e t h er e i s n’ t any reported trials using EBVs t o s e l e c t for n e o n a t a l l a mb c o l d t o l e r a n c e , t h e i r u s e i n b r e e d i n g p r o g r a ms s e l e c t i n g f o r l e a n m u s c l e growth is well established. The b e n e f i t s o f c o mp a r i n g 3 -AR genotypes with EBVs in a trial like this i s t h a t E B V s mor e a c c u r at e l y r e p re se n t t h e t r u e “ g e n e t i c v al u e ” o f a n i n d i vi dua l t h a n t h e r a w data used in this study. 3.5 Conclusions G e n e s o f ma j o r e f f e c t h a v e b e e n previously detected in sheep, t h o u g h n o n e h a v e b e e n i d e n t i f i e d t ha t i n f l u e n c e n e o n a t a l l a mb c o l d t o l e r a n c e . S l e e f o u n d e v i d e n c e t h a t one existed in the catecholamine s t i mu l a t i o n o f b r o w n a d i p o s e t h e r mo g e n e s i s a n d t h e r e i s e v i d e n c e t h a t i n d i ca t e s t h a t t h e 3 - A R g e n e i s a l i k e l y c a n d i d a t e . Ho w e v e r , t h i s h y p o t h e s i s w a s n o t c o n f i r med i n t h i s s t u d y , t h o u g h i t a p p e a r s t h a t the results w ere conf ounde d b y a n u n s u i t a b l e e x p e r i me n t a l d e s i g n . The r o l e o f t h e 3 - A R g e n e i n l e a n mu s c l e g r o w t h i n l a mb s w a s a l s o i n v e s t i g a t e d . Wh i l e v a r i at i o n w a s f o u n d b e t w e e n s i r e l i n e s i n l a mb g r o w t h r a t e , v a r i a t i o n b e t w e e n l a mb g e n o t y p e s w a s n o t o b s e r v e d . S o w h i l e i t a p p e a r s t h a t the r e sults we r e c onf ounde d by e x p e r i me n t a l d e s i g n , t h e r e i s e v i d e n c e t h a t i n f l u e n c e o f p o l y mo r p h i s m i n t h e o v i n e 3 A R g e n e o n n e o n a t a l l a mb m o r t a l i t y a n d / o r l e a n mu s c l e g r o w t h i s n o t s u ffi c i e n t t o b e c o n s i d er ed a ma j o r gene effect. 59 Chapter 4: General Summary and Future Directions N e o n a t a l l a mb s u r v i v a l h as an e x t r e me l y l o w h e ri t a bi l i t y , r e s u l t i n g f r o m t h e l a r g e n u m b e r o f e n v i r o n me n t a l a n d g e n e t i c f a c t o r s t h a t i n f l u e n c e i t ( A l e x a n d e r , 1 9 8 4 ) . Co n s e q u e n t l y t h e r a t e o f i mp r o v e me n t i n l a mb s u r v i v a l h a s b e e n r e a s o n a b l y l o w . B y f o c u s s i n g u p o n a n i m p o r t a n t c o mp o n e n t o f l a mb s u r v i v a l ( n e o n a t a l c o l d t o l e r a n c e ) w i t h a h i g h e r h e r it a b i l i t y ( e s t i ma ted at around 0.3 ( Slee & Stott, 1986, Wolff et al., 1987) ) , mu c h f a s t e r i mp r o v e me n t i s possible. Under conditions that were representative of typical New Zealand farming conditions, this experiment was sufficient to show that there was phenotypic variation between sire lines v a r i at i o n i n n e o n a t a l l a mb c o l d t o l e r an c e . T h i s i n d i c at e s t h a t s i r e selection is sufficient to breed cold tolerant lambs provided there are sufficiently large sire groups and genetic variation. Lamb birth weight was also found to have a large influence on lamb mortality due to cold exposure and was also found to be largely responsible for the influence of birth rank on lamb m o r t a l i t y d u e t o c o l d e x p o s u r e ( Cha pt e r 2) . T h e s e f i n d i n g s h a v e g r e a t i m p l i ca t i o n s f o r t h e s h e e p i n d u s t r y . T h e p r e s enc e o f s i re l i n e va r i a t i o n i n ne o n a t al l am b c o l d t o l e r a nc e me a n s t h a t s i r e s e l e c t i o n c a n b e u s e d t o b r e e d c o l d t o l e r a n t l a mb s a n d r e d u c e r e p r o d u c t i v e w a s t a g e . T h i s i s o f p a r t i c u l a r i mp o r t a n c e t o f a r me r s i n a r e a s t h a t a r e r e g u la r l y e x p o s e d t o a d v e r s e w e a t h e r c o n d i t i o ns l e a di n g t o h i g h n e o n a t a l l a m b mor t a l i t y a n d t o b r e e d s o f s h e e p t h a t a r e mor e s u s c e p t i b l e t o c o l d e x p o s u r e t h a n o t h e r s . T h e o p t i o n o f i mp r o v i n g l a mb v i a b i l it y b y g e n e t i c s e l e c t i o n i s a t t r a c t i v e b e c a u s e t h e c o s t s i n v o l v ed a r e s ma l l a n d n o n - r e c u r r e nt i n 60 Chapter 4: General Summary and Future Directions c o n t r a st t o t h e a l t e rna t i v es o f i mp r o v i n g n u t r i t i o n , s h e l t e r o r i n c r e a s i n g t h e a mo u n t o f s h e p h e r d i n g ( H a l e y e t al . 1 9 8 7 ) . Low birth weight was found to have a large influence on n e o n a t a l l a mb c o l d t o l e r a n c e d u e t o c o l d t o l e r a n c e i n t h i s s t u d y . Genetic variation in birth weight has also been observed by other r e sear chers ( M cGui rk e t a l . , 1982; Smith, 1977; Dwye r e t a l . , 2001) and in parts of this study . A l t h o u g h l a mbs w i t h h i g h b i r t h w e i g h t s a r e p r e d i s p o s e d t o d y s t o c i a ( S c a l e s e t a l ., 1 9 8 6 ) , t h i s r e s ult suggests that genetic va r ia t i o n i n b i r t h w e i g h t ma y b e w o r t h y o f f u r t h e r s t u d y a s a me t h o d o f r e d u c i ng n e o n a t a l l a mb mo r t a l i t y . D i r e c t se l e c t i o n for t h i s t r ai t i s p o s s i b l e , a n d t h e r e i s n o r e q uireme nt for an unpre dic ta b l e c o l d c h a l l e n g e ( H a l e y et al . 1 9 8 7 ) . T h e i n f l u e n c e o f b i r t h w e ig h t o n n e o n a t a l l a mb mor t a l i t y d u e t o c o l d e x p o s u r e h a s ma j o r i mp l i c a t i o n s f o r t h e h i g h f e c u n d i t y b r e e d s l i k e t h e B o o r o o l a M e r i n o and Finnshe e p. Due to the la r ge litter size of these breeds, the offspring are generally lighter than l a mbs f r o m o t h e r b r e e d s a n d c o n s e q u e n t l y mor e s u s c e p t i b l e t o d e a t h f r o m c o l d e x p o s u r e ( Hi n c h e t al . 1 9 8 5 ) . B e c a u s e o f t h e s e fa c t o r s , fu r t h e r i n v e s t i g a t i o n i n t o t h e g e n e t i c f a c t o r s i n f l u e n c i n g birth weight and hence neonatal lamb cold tolerance is warranted. However, the birth weight of lambs is dependent upon a large number of factors (maternal disease, birth rank, sex, parental breed, maternal age, size and parity (Alexander, 1974)), making genetic improvement difficult, although direct s e l e c t i o n f o r t h i s t r a i t i s p o s s i b l e ( Ha le y e t a l . 1987). S i r e l i n e a n a l y s i s l i k e t h a t us e d t o a n a l y s e n e o na t a l l a mb m o r t a l i t y d u e t o c o l d e x p o s u r e may n o t b e a s p o w e r f u l a s o t h e r me t h o d s o f a s s e s s i n g t h e g e n e t i c v ar i a t i o n o f p a r t i c u l a r t r a i t s , b u t i t ’ s s t u d y i s o f p a r t i c u l a r i mp o r t a n t a n c e t o c o m me r c i a l b r e e d i n g p r o g r a ms u t i l i s i n g t e r mi n a l s i r e s . T e r mi n a l s i r e s a r e e x p e c t e d t o p a s s o n g e n e s c o n f e r r i n g a n i m me d i a t e i mp r o v e me n t i n 61 Chapter 4: General Summary and Future Directions p e r f o r ma n c e , w h e r e a s i mp r o v e me n t t h a t o c c u r s a c r o s s ma n y g e n e r a t i on s a s i s a c c e p t a bl e i n s e l f - r e p l a c i n g f l o c k s . D e t a i l e d i n v e s t i g a t i o n o f t h e ef f e c t s o f v a r i a t i o n i n t h e g e n e c o d i n g t h e 3 A R on cold tole r a nc e a nd le a n mu s c l e g r o wt h s h o w e d t h a t polym orphism in sir e 3 AR ge notype s is linke d with c old m o r t a l i t y ( C h a p t e r 3 ) . G e n e s o f maj o r e f f e c t h a v e b e e n p r e v i o u s l y d e t e c t e d i n s h e e p , t h o u g h n o n e h a v e been previously i d e n t i f i e d t h a t i n fl u e n c e n e o n a t al l a mb c o l d t o l er a n c e . Wh i l e t he r e i s e v i d e n c e t h a t p o l y m o r p h i s m i n t h e 3 -AR gene influences neonatal lamb c o l d t o l e r a n c e , t h i s h y p o t h e s i s wa s not c onf ir me d in this study. The results were confounded, however, by an unsuitable e x p e r i me n t a l d e s i g n . A s i mi l a r l a c k o f r e s p o n s e t o v a r i a t i o n i n t h e 3 - A R g e n e f r o m l e a n mu s c l e g r o w t h w a s a l s o d e t e c t e d . W h i l e v a r i a t i o n b e t w e e n s i r e l i n e s i n l a mb g r o w t h r a t e w a s f o u n d , v a r i a t i o n b e t w e e n l a mb g e n o t y p e s i n a n y o f t h e c o mp o n e n t s o f l e a n m uscle grow th w as not obse r ve d. Consequently there is no e v i d e n c e t h a t t h e use o f t h e 3 A R g e n e a s a g e n e t i c ma r k e r f o r e i t h er c o l d t o l er a n ce o r l ea n m u s c l e g ro w t h i n l am b s i s p o s s i b l e . Marker assisted selection would have increased the rate of genetic p r o g r e s s a n d r e mov e d t h e n e e d f o r l a m b s t o b e cha l l e n ge d w i t h c o l d i n ord e r t o se l e c t for r esi s t a nc e . Th u s t h e u se o f ma r k e r a s s i s t e d s e l e c t i o n c a n r e d u c e o r e v e n e l i mi n a t e t he c o s t s i nv o l v e d with the loss of production during such challenges and the p h e n o t y p i c me a s u r e me n t o f t h e t r ai t s , as w e l l a s b e i n g mor a l l y acceptable (Garrick & Spelman 1996, Davis & DeNise 1998). I n a n i d eal s i t ua t i o n, t h e r e sul t s o f t h i s e x p e r i me n t n e e d t o b e r e p l i c a t e d t o e n s u r e t h e i r a c cu r a c y . T he a c c u r a c y o f t h i s s t u d y w o u l d a l s o b e n e f i t f r o m s o m e i mp ro v e me n t i n e x p e r i me n t a l d e s i g n . Difficulties arising from the use of field trials, inadequate progeny group sizes and flocks with low ge n e t i c v a r i a t i o n a r e d i s c u s s e d i n 62 Chapter 4: General Summary and Future Directions t h e e x p e r i me n t a l c h a p t e r s . S ome o f t h e s e d i f f i c u l t i e s w o u l d b e e a s y t o r e ct i fy i f a d e q u a t e r e s o u r c es w e r e a va i l a bl e . Wa t e r s pr a ye r s ( ‘ a rt i fi ci al r ai n ’ ) a nd fa n s ( ‘ ar t i fi ci a l wi n d ’ ) ca n b e u s e d t o mi mi c a d v e r s e e n v i r o n me n t a l c o n d it i o n s d u r i n g l a mb i n g , t h u s s t a n d a r d i si n g a n d gua r a n t e e i n g s u f f i c i e n t c o l d cha l l e n ge a c r o s s a l l l a mbs involved in the tria l. W h e t h e r i t w o u l d b e mor a l l y a n d e c o n o mi c a l l y a c c e pt a b l e t o de v i s e o r t o d e l i b e r a t e l y t o l e r a t e s u c h c o n d i t i o ns l e a di n g t o h i g h m o r t al i t y i n o r d e r t o p e r mi t g e n e t i c s e l e c t i o n i s d o u b t f u l , p a r t i c u l a rl y i n a c o m me r c i a l f a r mi n g e n t e r pr i se ( H a l e y et al. 1 9 8 7 ) . E w e s c o u l d h a v e a l s o b e e n s y n c h r o n i s e d i n g r o u p s t o e n s u r e t h a t r o u g h l y e q u a l n u mb e r s o f e w e s w e r e l a mb i n g t o e a c h s i r e o v e r a gi v e n t i me p e r i o d ( e g. o n e w e e k ) o f t h e t r i a l p e r i o d . T h i s would ha ve the dua l e f f e c ts of h e l p i n g t o e l i mi n a t e t h e v a ri a t i o n b et w ee n s i r e l i ne s i n t he se v e r i t y o f t h e w e a t h e r c o nd i t i o ns e nc o u n t e r e d a n d e n s u r i n g t h a t r o u g h l y e q u a l n u m b e r s o f l a m b s w e r e b ei n g b o r n a t a n y g i v e n t i me ( a n d w e a t h e r co n d i t i o n) w i t h i n t he t r i a l . T o r e mov e t h e e f f e c t s o f i nsul a t i o n ( bi r t hc o a t an d s k i n thickness) and behaviour (lamb a n d m a t e r na l ) fro m l a mb c o l d t o l e r a n c e , t h e u s e o f t h e p r o g r es s i v e l y c o o l e d w a t e r b a t h m e t h o d developed by Sa ms on and Slee (1981) w o u l d h a v e b e e n i d e a l . T h i s me t h o d w o u l d h a v e b e e n p a r t i c u l a r l y suita ble f or a na lysing the r ole o f p o l y mo r p h i s m i n t h e o v i n e 3 A R g e n e i n n e o n a t a l l a m b c o l d t o l e r a n c e ( C h a p t e r 3 ) , a s i t w o u l d h a v e o n l y me a s u r e d t h e t h e r mo g e n i c r e s p o n s e o f t h e l a mb . T h e mos t l i mi t i n g f a c t o r i n t h i s s t u d y w a s t h e s ma l l s i z e o f t h e si r e lines. L arger sire line s would h a v e ma d e i t e a s i e r t o d e t e c t a n y v a r i a t i o n b e t w e e n s i r e l i n e s a nd to show tha t the dif f e r e nc e b e t w e e n si r e l i n e s w a s a s i gni f i c a n t di f f e r e n c e . U s i n g m o r e c r o s s b r e d a n i ma l s c o u l d h a v e a l s o i nc r e a s e d t he g e n e t i c v ar i a t i o n 63 Chapter 4: General Summary and Future Directions w i t h i n t h e s t u d y , t h o u g h i t w o u l d h a v e b e e n i mp o s s i b l e t o e s t a b l i s h a n y w i t h i n b r e e d ge n e t i c e f f e c t s . V a r i a t i o n b e t w e e n si r e l i n e s i n n e o n a t al l a mb c o l d mor t a l i t y d u e to cold exposure w ithin br e e ds wa s de te c te d, sugge sting tha t s i r e l i n e se l e ct i o n i s s u ffi c i en t t o i nc r e a s e n e o na t a l l a mb c o l d t o l e r a n c e . B i r t h w e i g h t w a s f o u n d t o p l a y a ma j o r r o l e i n n e o n a t a l l a mb c o l d t o l e r a n c e a n d f u r t h e r s t udy into the r ole of bir th we ight i n n e o n a t a l c o l d t o l e r a n c e a p p e a r s to be wa r r a nte d, though c a r e m u s t b e t a k e n t o a v o i d i n c r e a s i n g t h e i n c i d e n c e o f d y s t o c i a . Whe n t h e r o l e o f p o l y mo r p h i s m i n t h e o v i n e 3 A R g e n e o n n e o n a t a l l a mb mor t a l i t y a n d / o r l e a n mus cl e g r o w t h w a s i n v e s t i g a t e d , t h e results suggest that influence of 3 A R g e n e o n n e o n a t a l l a mb m o r t a l i t y a n d / o r l e a n mu s c l e g r o w t h i s n o t s u f f i c i e n t t o b e c o n s i d e r e d a ma j o r g e n e e f f e c t . Fur the r study is justif ie d howe ve r o w i n g t o s o me o f t h e e x p e r i me n t a l d i f f i c u l t i e s e n c o u n t e r e d i n t h i s study. 64 Acknowledgements. This thesis couldn’t have been w r i t t e n w i t h o u t t h e h e l p o f t h e f o llow ing people. Mum a nd Da d f or you know wha t whic h r e sulte d i n me , p u t t i n g u p w i t h me a t h o me f o r 1 8 y e a r s a n d s t i l l l e t t i n g me i n the door w hen I need a br e a k, f or f unding my s t udie s a nd f or r e c o r d i n g t h e d a t a o n a n d p r o v i d in g a c c e s s t o o ne o f t h e r e s e a r c h f l o c k s u s e d i n t h i s s t u d y . I w o u l d a l s o l i k e t o t h a n k my s i s t e r , A n g e l a f o r g i v i n g me s o me w h e r e t o l i v e f o r a c o u p l e o f y e a r s a n d m y u n c l e , D r A n d r e w B r a y f o r a ll o f h i s a d v i c e , g u i d a n c e a n d t i me s p e n t p r o o f - r e a d i n g . T h a n k s a l s o t o a l l t h e ot h er me mb e r s o f my e x t e n d e d f a mi l y f o r t h e i r s u p p o r t . I would like to acknowledge the generous grant I received from t h e S i n c l a i r C u m mi n g s T r u s t a n d t he s c h o l a r s hi p I r e c e i v e d f r o m t h e S u p r e me G r a n d R o y a l A r c h C h a p t e r Ju b i l e e M e m o r i a l S c h o l a r s hi p fund, whi c h have greatly assiste d i n f u n d i n g my p o s t g r a d u a t e studies. I w o u l d l i k e t o t h a n k t h o s e p eo p l e a t Lin c o l n U n i v e r s i t y w h o h a v e a s s i s t e d me i n m y s t u d i e s . M y s u pe r v i s or s , D r J o n H i c k f o r d a n d P r o f . A n d r e w S y k e s , f o r a l l o f t h e i r g u i d a n c e , e n c o u r a g e me n t a n d a d v i c e . O t h e r me m b e r s o f M o l e c u l a r B i o t e c h n o l o g y g r o u p ( S a n d y , G r a n t , A n d r e a , M a r i o , T u l a y , H u i t o n g a n d C a r me l ) f o r t h e i r h e l p , s u p p o r t a n d a d v i c e , i n p a r ti c u l a r R a c h a e l Fo r r e s t w i t h o u t w h o s e h e l p I w o u l d n ’ t h a v e b e e n c o mpl e t e l y l o s t . T h a n k s m u s t a l s o go to Chris Logan, John Dunnet and Nigel Jay for all their help c o l l e c t i n g t h e d a t a f o r a n a l y s i s , C h r i s Fr a mp t o n , w i t h o u t w h o m I w o u l d h a v e b e e n l o s t i n a h u g e pi l e o f n u mb e r s a n d S u e W i n t e r f o r k e e p i n g t r a c k o f t h e a d mi n i s t r a t i ve n i g h t ma r e t h a t I ’ v e u n d o u b t e d l y c a u s e d ( a n d f o r t h e s u p p l y o f h u mo r o u s e ma i l s ) ) . I w o u l d a l s o l i k e t o t h a n k a l l o f t h e o t h e r p o s t g r ad u a t e s i n t h e d e p a r t me n t w h o s e w o r k / l i fe I ’ v e d i s t ur b e d a t s ome t i me o r a n o t h er . I n p a r t i cu l a r , t h e 65 i n h abitants of M Y o f f i c e ( I w a s t h e r e f i r s t ! ) , H a nn i e s , M ar i o , F r i d a y , K a t h y r n , Th a y i l a n i a n d T a ma n n a a n d t h e t h i r d f l o o r r e s i d e n t s , B r a d l e y a n d L u c i n d a . T h a n k s t o t h e 4 t h f loor te a - r oom n e w s p a p e r s u p p l i e r a n d o t h e r “ t h i n k t a n k ” me m b e r s . M a y y o u o n e d a y s o l v e a l l o f t h e w o r l d s p r o b l e ms ( a t l e as t i n t h e o r y ) fr om g l o b a l c o o l i n g t o w h y w e k n o w mo r e a b o u t inte r na tiona l spor t tha n those who have played it! I w o u l d l i k e t o t h a n k t h e f o l lo w i n g l o c a l g r o u p s f o r p r o v i d i n g s o me r e l e a s e f r o m m y s t u d i e s : E l l e s m e r e C o n c e r t B a n d , S p r i n g s t o n Dogs Rugby Team and Springston B Cricket team. Thanks also to t h e E c o l o g y S o c i a l g r o u p f o r n o t b e i n g a c o mpl e t e g r o u p o f t r e e h u ggers and being a good gr oup of gu ys to hang out with. In p a r t i c u l a r t h a n k s t o t h e M a n s i o n ( an d i t ’ s i n h a b i t a n t s ) f o r b e i n g t h e s c e n e o f ma n y o f m y c r i me s . T h a n k s t o my ma n y o t h e r f r i e n d s , i n p a rticular H ayden, Mick ( a nd br othe rs), Eric (and Mrs), Jack, Rob a n d my f l a t ma t e s J a n e a n d G a v i n . A s muc h a s I w o u l d l i k e t o t h i n k tha t this the sis c ouldn’ t ha ve b e e n w r i t t e n w i t h o u t me , I k n o w t ha t i t c o u l d n ’ t h a v e b e e n w r i t t e n without the help of the you guys , it was a team effort, all credit to you, it was a thesis of four chapters that required a lot of c o m mi t me n t f r o m a l l p a r t i e s , i t s been a long and hard road to c o mp l e t i o n b u t t h e t h e s i s w a s t h e w i n n e r o n t h e d a y . If I’ve forgotten anyone, I sincerely apologise and your help was most appreciated. 66 References Cited: A l e x a n d e r , G . ( 1 9 6 2 ) . T e mp e r a t u r e r e g u l a t i o n i n t h e n e w b o r n l a mb . I V . T h e e f f e c t o f w i n d a n d e v a p o r a ti on o f w a t e r fr o m t h e c o a t i n me t a b o l i c r a t e a n d b o d y t e m p e r a t u r e . Australian Journal of A g ricultural R esearch. 1 3 : 8 2 – 8 9 A l e x a n d e r , G . ( 1 9 6 4 ) . 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B r u s s e l s , C o m mi s s i o n o f t h e E u r o p e a n C o m mu n i t i e s : 63-77. 79 Appendix 1: Cost of Neonatal Lamb Mortality due to Cold Exposure Number of Lambs Born 1 (Meat and Wool Economic Service of N.Z., 2001a) = 15% 15% of all lambs born die before weaning each year (McCutcheon et al. 1981) = = 806 000 dead lambs due to cold exposure $49.81 Average price of a lamb (Meat and Wool Economic Service of N.Z., 2001b) 1 5.37 million dead lambs 15% 15% of all dead lambs die of cold exposure (Gumbrell & Saville, 1986) Cost of neonatal lamb mortality due to cold exposure in New Zealand per annum. 35.8 million lambs = $ 40 million All values are for the 2000 lambing season 80 Appendix 2: Hampshire Autopsy Report (3/9/1999) ¢ ~ ':111 ':113 tG.VET HIVE' AORANGI VETERINARY SERVICES (LIMITED; AORANCI (LIMITED) MKienlle Mackenzl. Mackenll. HiQhll.,u HiQhli.'d V.,ennary Cenlre ~.t.rinary Centre Centra V.terlnary V,.I Pelil',,,n A .SC V V,J PeIH""n AV V,S<; 8 'V i .Se ,Se BM o"'UUI oll'e," B'y,S<; III'''' Ko,a,0 ;,m~ nl 265 U 0111 ." H i ,m~ ", PO 8o>·1h!l3 Hlghh. ltI PO Bv. 1)13 HlghhelU TIOI:HlI TIOI:trlJ T elcphQ,,,' 03 •• Telerlhop,' 03 684 ,6 , 646 ~m l 1'I., 03 688 l'l9 l'!9 ?7 ~acsll" " " . 03 Val8riltlry CliOlt Val8rinJry Ctinlc CliOic K O'[I ;rM ~r 2fJy, BTJ ~'), KR O' "~' AlianlJalt arrHC Ali<lnua" no~d nuJd I arrHO alrilC PO H B o, Q, 17 ,;!rhp ,,,rhp BG' f"rhr Tcltp~olle ·685 840) Tcl!p~olle 03 O~ ,685 8407 ;):J' h8~ 8904 fac<,",," 'J'J.hS' :YJ' fat"""" Geraldln, Geraldln. Velerinary Veterinary Cenlre Veterioary Centre Plllnn1 Ptllnn1 Poil1 Pltlnnl Pol4l1 :M M CQlsoIIB otSOil BVSr. MG C Cllher'llPOO $, M llher'lloOd 8 \J alherwoOd 'I S, Sue/I. G eraiOln, 2; 'NIlson W,ison ,lson Street. Gc'aldlnE Ge'aldlnE r~ic phone' 0),693 03-690 1161 r~lcchone' 1151 Am.1IIS Offlt. Am.." Offlc, T1 IlephoP" ephor" :1"·688 :\'1·688 :';',; ~:,,' facsimile ,)J 688 4,<, faC Simile ·)J688 F.fllatl' aI''' iH" lI C, P~\(tra F.rnatl' r(C~ ra I;U I~(; •~ Bo' ' J13 HlQhli"d HiQhil"il PO Bo, Yet.rlnery Clinic Vel.rlnlry Vet.rlnlry B.S OO"'"11 B'i"Se Sl .B., lLoo"" 4", l l ll 11 MamR Road. PIJlll l 49 Main oad. P!ea '~~,:,nt irn t P Telept,r.n, 03·614 7S07 Telept.r.n, 7 7507 507 fl1:similP 03·614 03·6 14 ;~09 facslmllP facslmilP i~09 l,maru I"tSlfOlle 0j,691 H 9) 116\ 116 \ ."t5" 0I16 O 0J.69J 11 61 3.9,99 J,9.99 Mis Rand M/s R and M Gudex Factory Rd R.D . R.D. Temuka Dear Ray and Margaret Margar~t re<:unls rr~s ult s of o f the ror your recunls 0sults samples collected on the 18.8.9 lR . 8.99, 9. lamb abortion inv estij!;ation nn nil i nvestigation background wlwn wllt!n yo .'l twn two tooth . .1~ youu bagged bagg e d the ewe ewe~s there were !l :; ix tuuth, (lflC '<)5 ewe: .lI1U three '94 were empty. empty . W We :;ix tuoth, (lilt! i!.WC: .1I1d '9 ,~ ewes that IVcre e assumed they !tilU ill I be been ~here wa nonc~ lVi th 'latE" ' had aJ en tupped as (here wass non!? rh 'latp ~rayon and these thc~e dr dryy numbe yo ni c death ., crayon numberr s suggested early emhr yonic As AS ut the beginning of ;\ugust aand laml"" Abortion starleu starll:u <.Il nd in aillllI 16 lamh ,)'J . the ~ tart of la mbing (t hree hd hu vt' v€' had died by the :;~ sS ." ·q~.. ')'J. t/1e official start lambing (three died since) . o th ewes \dc~i nat e d each year WI wl th Tnxovax vaccine0 'f wD wo to tooth ew~ s hud Iltcn Ilten 'dL c inated Toxovax vaccin 'fwo On autopsy the "1IlIhs sugge tlt e! LlIlIhs s ugge s ted death had occurred close to being expelled ., Samples wcre were collected. in utero vu ve,'v ver- v\' R~SJnT~ R~SJ1U:> Toxoplasma Stomach contt;lltss no S tomach content 110 isolates . significant isolates. DI QI SCUSS ~P1.S..S_ ION I.9~ Th;-h'i'ghThe high -numlieJ' numlii!r Lluff dr y isolation of Toxuplasma Toxupl.isma plasma attack throughout pos i tive x 2 (titre positive ( titre level c.lmpylobacter, Campylobacter, no 1 : 128) Salmonella , no othe r other animals, animals , despite tupp i ng marks , and thl! th e in two aborted lambE lamb~ does dot' s suggest Tow the pregnancy. Toxo s e abortion dbortion any time during the pregnancy and the Tuxo will cau se th e ~IIYs ctbOlled dl ys probabl y abol dbol It;d celliy Cell I yin y in lheir the i r pregnancy . The aborted foetu :~ would have been too small to see. that. you have regularly used Toxova~ lTliis l,is is alarming 1l!5ult Je s uit g i ven that vaccint! liver P.l s t yea yearr s and the flock should he ht, vact:ine uver Ule tlie P.lst immune . hl' immune. was very high There is always a possibility that the Toxo attack wa:> hi g h ....lilt.! accine (you did comment that yoU!' neigh wc..! this overwhelmed the vvaccine L~ster Mulligan had hac..! a heavy dose of abortion in his hiR ewes). ewes) . huur Lester 81 Appendix 2: Hampshire Autopsy Report 3/9/1999 -2~e v ertlil;)less :-ieverlilidess :-ieverlllldess technique . WI:: Wt: JIlU~t must re 'l'/v icw iew vaccination handling, timing and Toxovax is a H!ry ,cry se nsitive nsitivc \'vaccine accine to heat and sunlight, it is 11 liv\:: livC;! val:cine vaccine ulill ullll uuu L!xpircs. cxpires, or goes off, off . very quickly ., Recommenda Recommenda-linns tillns suggest I" I:; ;, "l1o llOUld ulu be: us used ed wi within thin 5 days (If (1f arrival at 'the th e clinic Until it is i~ time Ll) l,) use tlie tile vaccine keep it refrigerated . Tox o,uxx Lllncent!d l:ll ncent! 'dtc tc vigorously vigorousl y during preparation. preparation . Slluke the Toxu\<l. Siluke En/, En/; ure the gull En!,ure gu ll dod dllll tubing tubi:l!; iiss free o f material s cg meths etc that could harm the live vaccine. djsinfectant~ disinfectant~ . Use immediatelyy after preparing and mixing. l' ~e immediatel 't It should .Q!,).! Q9J he bl! u,eu u;;eu wi witliin Lhin thin four weeks of tupping hut can be used mu..:h earlier if j f cL' cU lIven ll venien cg. OCL:cmbcl' Oc..:cmbcl· January Januar y,. Vaccine immunit' immuni n·1' mUL:h ie n t eg. should last the life of the animal. animal . Hope this is 0" sume help Yours sincerely r . M.Colson S.V . Se . B.V.Se B.V.St: 82 Appendix 3: Manufacturers Instructions for FTA Card Purification. ~card' Cat. No.: 10786-010 Lot No. 1074184 lIFE~TEO-NOLOGIE5_ LlFE~TEO-NOLOGIES_ Size: 100 cards Store at room temperature. Description: FT A Cards are designed for the convenient collection, storage, and subsequent DNA purification puritication of blood samples for DNA analysis, databanking, and genomics. The specimen area is constructed from FT A paper, which is impregnated with a proprietary formulation. The card is constructed of materials that will not aUect atTect the DNA analysis of a blood sample. A cover sheet protects the samples and allows the card to stand on its own while drying the sample. The FT A Card can be used in conjunction with the ULTRABARRlERTM ULTRABARRIERTM Pouch and desiccant for shipping or long term storage of blood specimens . Quality Control: FTA Cards are inspected tor for product integrity and uniformity. !i I I .----- - Protocols: Application of blood sample sample:: Spot peripheral blood directly on the FTA Card. overnight before processing further. Caution : Universal Precautions should be used Caution: potentially infectious human-source blood products. S & I Allow to dry II h to when handling any Extraction of peripheral blood DNA for PCR * analysis: When the cells are lysed in blood stains on FTA paper, the nuclear DNA from the white blood cells is immobilized within the matrix of the paper. Heme and other inhibitors of PCR amplification amplitication can be removed by washing. After processing, the immobilized DNA is amplified directly on the FTA paper in the presence of the appropriate amplification mix. ® Doc. Doe. Rev ..:: 10/05/99 IO/OS/99 This product is distributed for laboratory research only_ only. CAUTION : Not for diagnostic d iagnostic use. The safety s afety and efficacy of this product in diagnostic or o r other clinical uses has nol not been established established.. For TeeM-LINEsM (800) 828-6686 F o r technical Questions about this product . call the Ufe Technologies TecH-LtNEsM V II.. Using a clean I to 33-l11m -111111 punch. remove a sample from the middle of the stain and place it into an amplitication tube whose minimum capacity is 300 ~L1. ~Ll. Purification Reagent to each tube. Cap each tube 2. Add 200 ~d of FT A Puritication and vortex 1-2 s at low speed. 33.. Allow the tubes to sit for tor 5 min at room temperature with a second brief vortex halfway through the incubation. 4. After the 5-min 5-l11in incubation. vortex for tor a third time and then carefully remove as much of the reagent as possible. S. 5. Repeat steps 2 through 4 an additional two times for tor a total of three washes with the FT A Purification Puritication reagent. 6. After FT A Puritication Purification Reagent has been removed tor the third time, add 200 ~L1 ~d ofTE [10 mM Tris-HCI (pH 8.0), 8 .0), 0.1 O. lmM mM EDTA). Cap each tube and vortex 1-2 s at low speed. 77.. Allow the tubes to sit for tor 5 min mill at room temperature with a brief vortex half way through the incubation. 8. Pour off ofT the TE and replace with an additional 200 III j.ll of TE . Cap each tube and vortex 1-2 s at low speed. 99.. Allow the tubes to sit for tor 5 min mill at room temperature with a brief vortex halfway through the incubation incubation.. 10. Pour off oft' the TE and allow the FT A paper punch to completely air dry. FTA This will require approximately I h at room temperature . Alternatively. the drying can be accelerated by placing the tube with the punch at 60°C for tor 30 min. 11. The complete PCR amplification amplitication mix is directly added to the punch containing the puritied immobilized DNA. DNA . It is recommended that 50-~d reaction volumes be used with all PCR amplitication mixes. sO-~d 83 // ,I "Welcome little [ella fella ... . . . -'fiJfab ·~r"ab a decent feed, lea/~ t'swim, like the cold, an' in 14 weeks we'll eat yer!" yerl"