Creativity From The Chiral Pool: Sugar Edition Ruben Martinez Disclaimer This group meeting is in no way meant to be comprehensive. There is an enormous body of literature featuring sugar starting materials in total synthesis of which this group meeting is only a sample. Any comparison made between syntheses are for educational and discussion purposes only. Molecular Target Categories The target structure can be broken down into three categories based on how easily it can be traced back to the chiral carbohydrate pool. Total Synthesis of Natural Products: The "Chiron Approach" Stephen Hanessian ISBN-10: 0080307159 SEt HO O OH OH O diacetonide Tracking Treasure Down: Hanessian's "Rule of Five" 1) Select an sp, sp2, or sp3-hybridized carbon atom in target structure 2) Move five bonds away and look for a heteroatom regardless of functionality in between. These two internal reference points correspond to the anomeric C-1 and the C-5 oxygen atoms in the hexapyranose structure 3) Look at only that carbon chain and try to imagine a suitible chiral sugar SM. HO MeOH/H + 70% OH MeO OH O glucoside HO OH O 1) Ac2O 2) Br 2 3) Zn/AcOH 70% OAc OAc OAc glucal Cat. 3: Totally Hidden Carbohydrates Identification of carb. SM unlikely. Usually based around application of in-house methodology. *These are my simplified definitions based on Hanessians own in depth definitions, examples and analysis. EtSH/H + 70% Important Reactions to Keep In Mind Type I Ferrier reaction OH O OH An Example: OH C5 H H OH HO HO SEt dithioacetal Me 2CO/ZnCl2 90% Organic Synthesis with Carbohydrates Geert-Jan Boons ISBN-10: 1850759138 Is sugar derived chirality right for me? - End differentiated oxidation state - Stereochemical diversity - Carbon chain length varying between 3-7 carbons - Strong conformational bias - Ability to introduce other heteroatoms (N, S, X) with inversion or retention of configuration - Ability to branch using a C nucleophile - Excellent conformational bias and stereoelectronic effects maximize predictive outcomes based on models OH OH O O Design and Strategy in Organic Synthesis Stephen Hanessian ISBN-10: 3527319646 ACS Symposium Series 841 2003, 47. OH O Cat. 1: Apparent Carbohydrates Usually a lightly modified carbohydrate appended to a structure via glycosidation. Very easy to spot. Cat 2: Partially hidden carbohydrates One or two chiral centers may have been removed. Still contains carb. oxidation pattern. Identification likely requires squinting. Typical Reaction Channels Working from a feedstock carbohydrate is difficult, time consuming and wasteful. Entry into any reaction channel toward an enantiopure building block is mostly limited to chemistry dating back over 100 years in the carbohydrate literature. The initial stage always involves the fixation of the sugar in the respective tautomeric form. Resources The following books and reviews are excellent resources and were very helpful in the preparation of this group meeting. Natural Abundance Carbohydrates are the single most abundant class of organic compounds associated with living matter. Baran Group Meeting 06/30/14 R1 1) BzCl 2) Br 2 3) Et 2NH L.A. Nuc. O R2 O R1 Nuc R2 LG 85% OBz OBz BzO Type II Ferrier rearrangement O O OR4 OBz hydroxyglucal R1 R3 R2 L.A. H 2O O OH R1 R3 R2 H H OR Arguably the Most Useful Sugar Based "Chiron" for Modern Total Synthesis S NH 2 Why don't we see more syntheses based on chiral sugars? C1 N (R)-2,3-O-isopropylideneglyceraldehyde For every one unit of D-mannitol HO 2C NH 2 - Overfunctionaliztion with hydroxyl groups that subjected to protection/oxidative O OH OH have similar or identical reactivity CO2H cleavage two desired aldehydes are 2 steps O - Number of chiral centers present on starting formed. The resulting aldehyde is higly OH thienamycin O HO carbohydrate often excessive for the synthetic chemist NH 2 O prone to polymerization and hydrolysis. - Lack of suitible functional groups (olefin, carbonyl) Long term storage is not recommended OH OH OH to which modern organic techniques can be applied 25g $53.00 (Oakwood) For full, indepth explanation C1 C5 - Outcome of chemical transformations are unique to For (S)-derivative see: D-mannitol with details see pg. 236 in: available in 2 steps from D-mannitol HO O each sugar based on individual stereochemistry Org. Syn. 1995, 72, 1. 100g $16 (Oakwood) Design and Strategy in Organic Synthesis Org. Syn. 1998, 9, 450. - Development of outstanding asymmetric methodology Synlett 2001, 10 , 1565. OH Stephen Hanessian ISBN-10: 3527319646 Some Easily Accessible/Commercial/Useful Sugar Based Chirons Full exploitation of sugar starting materials OH OH OH OH OH - Retention of the carbon-chain of the sugar OH HO OBz TsO - Reaction sequence should be simple, high yielding with no HO Cl N3 Cl HO OH Different Representations chromatography. Focus on generating crystaline products. - Avoid protecting groups or use simple, easy to remove PGs O O MeO MeO O O MeO MeO OH O HO - Cost. OH O OTs Br HO 5 O Cl OH HO OH 5 O On practicality: reality vs. raw concept 3 OAc OH 1 HO HO HO 1 5 HO HO There are a huge variety of chiral carbohydrates available in 1 OR HO OAc O O O OH O HO O principle. However, the pool shrinks immensely when practical OH 3 3 OH OH and operational considerations are applied leaving a relatively OH O O O RO O OR MeO small number of realistic chiral sugar starting materials. MeO α-D-glucopyranose HO Me HO Br OAc OAc C5 C1 OH Total Synthesis of (+)-Ambruticin Kende's chiral sugar approach 5 Kende, A. J. Am. Chem. Soc. 1990, 112, 9645. 1 OBn BnO MeO 1) TBDPSCl, Im 2) Im 2CS then OH Bu 3SnH BnO O OH 12 O CO 2H 15 8 MeO O O Me OH O O OTBDPS OH Total Synthesis of (+)-Ambruticin Jacobsen's asymmetric catalysis approach Jacobsen J. Am. Chem. Soc. 2001, 123, 10772. Me Me OTBS Me 24 Me (+)-Ambruticin (Cat. 1: apparent carbohydrate) OBn 1) (COCl) 2, DMF(cat.) 1) TBAF BnO then CH 2N 2 2) PDC OBn MeO + OBn OBn BnO catalyst 1 (10 mol%) H OTBDPS 64% 97% ee OBn Et 2NSF 3 HO 92% O MeO TESO N OBn MenO 2C CO 2Men O CO 2Me 1) pTSA(cat.) 2) DMP H OTBS Me C OTES Me O OTBS Me 1) BH 3THF then 10% HCl 2) Swern ox. O Me 1) Ph 3P, CBr 4 2) DIBAL 73% over 3) TrCl, DMAP, four steps TEA 4) n-BuLi OBn 1) DIBAL O CO 2Me Me B O I Me Me1) Bu 3SnCu(Bu)CNLi2 MeI, DMPU 2) I 2 O Me Me 71% O Me Me TMSC(Li)N2 Me O O Me Me OBn O CO 2Men O Me OBn OBn Cl CH 2CHMgBr Me Pd(PPh ) (5 mol%) 3 4 3) Swern ox. 45% Men = l-menthyl as a single diastereomer see: JACS 1985, 107, 3343. + Me CO 2Me 1) 10% KOH (EtOH/H 2O, 9:1) CO 2Men 2) B H /THF 2 6 MenO 2C catalyst 1 (5 mol%) 87% 99% ee O O 73:27 β: α Cl LiTMP then Me Br O Cr O CO 2Me A H O Me catalyst 1 O CO 2Me OTBS OTBS 3) Pd/C, H 2 4) TPAP (cat.), NMO OBn TBDPSO O TBDPSO 2) h ν 53% over two steps 1) Ac2O, H 2SO 4 (cat.) BnO 2) NaOMe, MeOH BnO 1) BH 3THF then 30% H 2O 2, 3 N NaOH 2) TBSOTf, 2,6-lutidine OTBS O Name rxn? F Baran Group Meeting 06/30/14 Creativity From The Chiral Pool: Sugar Edition Ruben Martinez OTr 2) Rh(acac)(CO) 2 (S, R)-BINAPHOS H 2/CO CrCl 2, CHI3 OTr A Me I R O Me Me 1) ethyl acrylate Pd(OAc) 2 (10 mol%) Ag2CO3 Me O Me Me Me R HO 2) DIBAL Me R Name rxn? dr = 96:4 Zn(CH3CHI) 2 DME L* Me 1) O O HO H HO 2C hydroquinone (cat.) 2) chiral resolution (+)-Ambruticin 1) n-BuLi then 2) Na(Hg) B 3) LiOH THF/H2O H 4) Li, NH 3 (l), EtOH O Me then Me [Pd] cat. HMPA Me SO2Tol O Me Me Me LiHMDS, DMF/HMPA Me (COCl) 2, DMF (cat.) Me Me Me SnMe3 C Tol O O O R O Me Me 1) MeMgBr 2) Ac2O, DMAP, TEA 3) LDA then TBSCl, HMPA then acid 4) CH 2N 2 OTBS OTBS Me 1) LDA then PTSF 2) (Me) 4N +-OAc MeO 2C HMPA S O Me Me Me Me O OTBDPS O Me Me Me Me PPh 3, PTSH, DEAD then Mo(VI)/H 2O 2 Me R HO Me 1)TBAF 2) Pt, O 2 H 2O/acetone (+)-Ambruticin Me Creativity From The Chiral Pool: Sugar Edition Ruben Martinez HO Synthesis of Trehazolin from D -Glucose: following a plausible biosynthesis Giese, B. J. Org. Chem. 1998, 63, 5877. Trehazolin from trehazolamine is known in the literature see J. Org. Chem. 1994, 59, 813. OH HO HO OH MeO N HO OH N H O O OBn O Trehazolin OH O HO HO HO HO +CO2 -2 H 2O O HO HO N N O N 1 N HO 3 HO 3 5 OH HN O O Li O Al H H O then N O O TBSO OH Ph OTBS K 2CO 3 MeOH OAc OTBS 1) DMDO 2) CSA HO O BnO BnO Ph O 1) MeONH 2•HCl, py 2) DMP O OH O BnO BnO SmI2 (5 equiv.) t-BuOH(2.5 equiv.) O NOMe 84% single diast. O BnO BnO O O OH NHOMe OTBS O OH OH HO NH 2 trehazolamine Na, NH 3 (l) BnO BnO O Ph Ph OH O OH NHOMe O 4) DBU Bn OTBS OAc 1) Na naphthalide 2) (Boc) 2O, TEA, DMAP O 1) K 2CO 3, MeOH 2) LAH, NaOMe BnO BnO O 61% over two steps NH O 3) Cs2CO 3, MeOH 4) Ac2O, TEA, DMAP NHBoc N Ts O O 1) Ac2O, py, DMAP 2) Pb(OAc) 4 HO HO 1) LiBH 4, MeOH 2) TsNCO 3) I 2, K 2CO 3 O O N 92% for RCM step Bn H 1) TBSOTf 2,6-lutidine 2) Grubbs' I O Giese's reductive cyclization approach O OH NHOMe BnO 63% HO Ph O BnO H OH O Bu 2BOTf TEA OH O OH OH OH O BnO MeON Bn O N OH Trehazolin NOMe N selective oxidation HO N N OH O O HO HO pinacol type coupling HO O BnO The Crimmins' Synthesis of Trehazolin: The chiral auxiliary and RCM approach J. Org. Chem. 2001, 66, 4012. OH O Ph O OH HO OH NHOMe BnO Ph LAH BnO OH OH O O O O OH 5 HO HO O O BnO Ph BnO 1 O MeO Ph HO HO C NH 2 OBn HO O HO HO Ph O Ph OH OH SmIII N SmI2 O O A speculated biosynthesis BnO OBn N H Baran Group Meeting 06/30/14 NH O OH HO 2) H 2O2 OsO4, NMO O BnO OBn SCN OAc OH NH O O OBn NOMe AcO HO known steps formal synthesis see J. Org. Chem. 1994, 59, 813. OAc AcO OAc AcO NHAc peracylated trehazolamine OH HO O NH O trehazolin TBSO OTBS 1)o-NO2C6H 4SeCN n-Bu3P 1) 2 N KOH, EtOH 2) Ac2O, py, DMAP Creativity From The Chiral Pool: Sugar Edition Ruben Martinez Baran Group Meeting 06/30/14 OH OH Total Synthesis of (+)-Lycoricidine from D -Glucose Ogawa, S. J. Org. Chem. 1993, 58, 4441. O O Total Synthesis of Echinosporin Smith III, A. J. Am. Chem. Soc. 1989, 111 , 8039. HO O CONH2 O H H (–)-Echinosporin O Lycoricidine Br O OH O 1) MOMCl 2) DBU MeO OH N3 Carbohydr. Res. 1974, 35, 175. OMOM 1) Hg(TFA) 2 (1 mol %) O MeO OMOM OMOM HO N3 HO MsCl, TEA OMOM HO N3 Br O OH O O OPMB OMOM OH L -ascorbic acid O 1) Luche red. 2) PMBCl, NaH OMOM 1)LDA, 2)Tf2NPh (72%) 3) Pd(OAc) 2, PPh 3, CO TEA, MeOH, DMF (83%) 2) MPMCl, NaH 2 Pd(OAc) 2 (10 mol%) DPPE, TlOAc (2 equiv) DMF O OMOM NMPM O O CO2Me H OH O C2 inversion via Mitsunobu O O deprotection 5 steps OH H H (10 eq.) O O O h υ, uranium filter 50% 1) Swern ox. 2) NH 2NHTs 3) Na, (CH 2OH)2 O O O Name rxn? O O Lycoricidine CO2Me H OMOM NMPM O O O H HO HO O O 50% OH CO2Me H H OMOM NMPM O not observed! CO2Me OH H Parikh-Doering ox. O OMPM OMOM syn-elimination HO NH formal anti-elimination? Br Pd O H Pd(DBA) 3•CHCl 3 diallyl carbonate OH 90% O O CONH2 Br H OPMB Pd OMOM H OMOM NMPM O O O CO2Me 1) KHMDS, HMPA then Davis oxaziridine HO H 2) acidic resin O OH HO OPMB OMOM O OTHP O OPMB OMOM O HO N3 N3 O O CO2Me O OMOM OMOM 1) DIBAL 2) MeOH, PPTS 3) Me 2CO, H 2SO 4 O 3) DHP, PPTS 4) Me 2SO 4, NaHCO 3 H (EtO) 2P(O)CN, TEA OMOM NMPM 1) Me 2CO, Me 2C(OMe)2 O 2) 30% H 2O2 (aq.), CaCO 3 then Pd/C O HO 1) LAH then Br O OPMB OMOM O OH NH CONH2 46% H OH O HO 1) 3.6 N HCl 2) Bu 3P, DEAD (28%) O CONH2 O H H (–)-Echinosporin NH 4OH, MeOH 86% OH O O Creativity From The Chiral Pool: Sugar Edition Ruben Martinez Total Synthesis of (–)-Tetracycline Tatsuta, K. Chem. Lett. 2000, 647. Total Synthesis of Fomannosin Paquette, L. Angew. Chem. Int. Ed. 2007, 46, 7817. MeO 2C O HO MeO 2C 4) PMB protect. 5) LDA, CH2O O TsO Tetracycline from a sugar? 1) DBU 2) Pd/C, H 2 3) MeOH, acid O 1) TBDPSCl OMe 2) DIBAL O OPMB TBDPSO OMe 3) Swern ox 4) Wittig olefination OPMB OBn BzN OTBDPS t-BuLi PMBO 3) PDC 4) TMSCH2Li 5)TsOH OTBS OH O PMBO 1) Cp2ZrCl2, n-BuLi 2) TBSCl, imid. Me OH 1) TBSCl 2) Oxidation 3) Wittig 4) HCl H MeO 2) BH 3•THF then MeO H 2O2, NaOH OH 3) BnBr O NBz H OBn OBn Me OBn O O OH OH O 1) NBz LDA 1) HgCl 2 2) MsCl, TEA OBn 3) DBU BzN PBU 3 OBn OMe OH O SeCN BzN 54% 2 steps OTBS OBn OBn OH 1) O3, Sudan III PPh 3 2) I NO 2 1) O MeO OTBDPS Baran Group Meeting 06/30/14 NBz OBn OTBS OBn DBMP 2) acidic oxidation O OMe O 1) Grubbs II 2) TBAF OH PMBO 1) HO 2CCH2COSEt, EDCI 2) IBX 3) Pd/C, Et 3SiH 4) NaBH 4, KH 2PO 4 MeOH/AcOH 5) TBSCl OH 1) OsO4 2) Swern ox. O PMBO HO Me SOCl2, TEA O H Me OH H NBz OBn H NMe 2 23 steps NH 2 OBn OTBS OMe OH O OH HO O HO O H O Tetracycline O 1) Tf2O 2) DBU 3) TBAF O O 1) SmI2, t-BuOH 2) TFA 3) SOCl2, TEA 4) DBU O O O HO OH O HO O O PMBO HO OTBS OTBS Fomannosin PGO O OMe Cp2ZrCl2 OPMB PGO Cp Zr Cp O Cp Zr Cp O OMe OPMB OPG OPG PMBO OPMB PMBO O OTBS OPG J. Organomet. Chem. 2006, 691, 2083. OH ZrL2 O Creativity From The Chiral Pool: Sugar Edition Ruben Martinez Synthesis of DS-8108b: from chiral aux to sugar and back Daiichi Sankyo Co. Org. Process Res. Dev. 2013, 17 , 1430. DS-8108b continued Sugars: just a bridesmaid, back to the chiral auxiliary Can your sugar do this? Early-stage synthesis O O 1) NaHMDS O BnO N O O Br O Shi's catalyst OBn oxone HO O O HO 2) LiOH, H 2O2 O LiH, Cl NH Bn O O O 1) Pd/C, H 2 2) NsCl, TEA NsHN HO Ph O O O O O O NsHN Cl O K 2CO 3 NH O O N conc. HCl HCl O N N Br N O NsCl NaHCO 3 O O NHNs N H N 1) 1-decanethiol, K 2CO 3 NsHN 2) fumaric acid 3) recrystalization O N 82% N 1) NaIO 4, KHCO 3, H 2O OH 2) OH O 3) NaOH Br N Br NHNs O OH OH H 2N O O O N O OH H 2N 0.2 eq Py-OH 0.3 eq TEA cat. 2-hydroxypyridine cat. TEA NsHN O Cl NH N N OH Ph 3P O O So where does the sugar come in? Avoiding chromatography en route to A O HMTA N N O Cl Ph N Br O Ph 63% AcOi-Pr O Br N Ph OH O O O Ph N Cl MsO DS-8108b N O NH 2 N 89% from A NsN 2 eq O Ph NsHN N O O Br Br Ph BnO O O 1) MsCl, TEA 2) NaN 3 N3 O A LHMDS O BnO MsCl, TEA AcOiPr Baran Group Meeting 06/30/14 OH O Ph O O 1) Pd/C, cyclohexylamine HCOONH 4 dicyclohexylamine (DCHA) dr = 67:33 CO2H OH 2) acetone slurry H N NsHN OH 60% 70% 67% Cl O N O 1) Decanethiol K 2CO 3, acetone-H2O 2) fumaric acid N N3 O Ph O NaN 3, TBAC CO2Me 1) Pd/C, H 2 2) NsCl, TEA 3) HCl, MeOH 80% 64% O Ph 1) MeI, NaHCO 3 2) MsCl, TEA OMs O CO2Me 91% OH O Ph O Cl OH CO2H O O O NsHN HO - 20% overall yield for the sequence - no chromatography - Sequence cost prohibitive (sugar SM) - Insufficient dr H N H 2N No chromatography 24% overall yield N O N Cl DS-8108b OH Creativity From The Chiral Pool: Sugar Edition Ruben Martinez Sugars: What are they good for? SGLT2 inhibitors. Sodium-glucose co-transporter 2 (SGLT2) inhibitors are a new class of drugs for the treatment of type 2 diabetes. Type 2 diabetes affects 23 million Americans making this area particularly interesting for the development of novel treatments. Cl Me O HO HO Process R & D synthetic route: a tale of two protecting groups O HO O O HO F HO OH Cl HO TMSO >90% OH O TMSO OTMS OTMS OH O O TMSO OH TMSO OTMS OTMS >70% Et OH Empagliflozin limited European approval OEt O AcO PhMe/Ac 2O TEA/DMAP 90% OMe AcO O OAc HO OH O OH 83% OH Et Et OH 1) MSA/MeOH 2) NaHCO 3 OMe HO OAc HO n-BuLi A O OH OH Canagliflozin FDA approved TMSCl/ NMM THF/PhMe O HO S Baran Group Meeting 06/30/14 Dapagliflozin limited European approval SGLT2 inhibitors, how do they work? The SGLT family includes the Na/glucose co-transporter SGLT1, which is mainly expressed in the GI tract and is responsible for glucose absorption from the food intake. SGLT2 is mainly expressed in the kidneys. SGLT2 is responsible for ~90% of glucose reabsorption in humans. SGLT2 inhibitors work by blocking the reabsorption of glucose in the kidneys. This prevents the build up of glucose in the blood and allows for excess glucose to be eliminated via urination. One of the most common side effects is genital infection. 1) Et 3SiH/BF 3•OEt2/H2O 2) 2,2-dimethoxypropane O AcO AcO aq. NaOH/EtOH OAc 3) EtOH crystallization O HO HO OAc 74% Et >20:1 β:α in the crude crystallization purges the α isomer crystalline final intermediate OH OH amorphous API For an indepth discussion see: Current Pharmaceutical Design 2014, 20, 3647. O HO Development of a large scale synthesis of an SGLT-2 inhibitor Bristol-Myers Squibb OPRD 2012, 16 , 577. HO HO OH OH First-generation synthesis O OH The target API BnO TEMPO/bleach NaHCO 3 BnO O BnO OBn O Br OBn BnO A n-BuLi OBn OBn Et O OH OBn BnO OBn O H 2, Pd/C HO OH BnO O BF 3•OEt2/i-Pr3SiH BnO OH OBn OBn Et Et COO H 2O OH NH 3 OH Et Et HO Ph HO Et BnO O L-phenylalanine EtOH/H 2O Et