Early Realized Genetic Gains for Coastal Douglas-Fir in the Northern Oregon Cascades J. Bradley St. Clair and Nancy L. Mandel, USDA Forest Service, Pacific Northwest Research Station, 3200 SW Jefferson Way, Corvallis, OR 97331-4401; and Keith J.S. Jayawickrama, Oregon State University, Department of Forest Science, 321 Richardson Hall, Corvallis, OR 97331-5752. ABSTRACT: Block-plot realized genetic gain trials were established for coastal Douglas-fir (Pseudotsuga menziesii var. menziesii) at five sites in the northern Oregon Cascades. The long-term objectives of these trials are to explore the growth trajectories and productivity of genetically improved stands and their relationship to predicted genetic gains based on performance in progeny tests. Measurements 5 years after planting provide an opportunity for an early assessment of realized genetic gains as compared to predicted gains and provide data for determining the number of replicates needed to detect statistically significant differences between improved and unimproved populations using large block plots. Results indicate that progress from selection and breeding of Douglas-fir is readily achievable, and realized genetic gains 5 years after planting are similar to those predicted based on results from progeny tests. Realized genetic gains were about 6% for height, 8% for diameter, and 28% for stem volume, compared to predicted genetic gains of about 8% for height, 7% for diameter, and 25% for stem volume. Large numbers of replicates (30 –50) are required to detect statistically significant differences in height and diameter between improved and unimproved populations given genetic gains expected in a typical tree improvement program. West. J. Appl. For. 19(3):195–201. Key Words: Tree improvement, realized genetic gain, Douglas-fir, sample size. T ree improvement has become a common part of the management of forest lands for wood production, and pre­ dicting the productivity and realized gains from forests planted with genetically improved trees will become in­ creasingly important. Douglas-fir (Pseudotsuga menziesii) tree improvement programs began in earnest in the Pacific Northwest in the 1960s, and seed orchards are now produc­ ing large amounts of improved seed (Silen and Wheat 1979, Adams et al. 1990, Woods 1993). Companies and govern­ ment agencies have invested millions of dollars on the genetic improvement of Douglas-fir, with over 4 million progeny from about 33,000 parent trees having been tested on more than 1,000 sites (Lipow et. al. 2003). As second- NOTE: Brad St. Clair may be reached at (541) 750-7294; Fax: (541) 750-7329; bstclair@fs.fed.us. This article was written by U.S. Government employees and therefore is in the public domain. The Northwest Tree Improvement Cooperative provided finan­ cial and technical support for this project. Special thanks go to Mike Bordelon of the Oregon Department of Forestry for initiating and helping design the study. generation breeding gets underway in the Pacific North­ west, fundamental questions about the growth of genetically improved stands and the interaction of genetics and silvi­ cultural practices remain unanswered. In particular, it has not yet been shown how predicted genetic gains based on growth differences measured on individual trees in young progeny tests translate to gains in stand yield at rotation age. As a result of these concerns, the Northwest Tree Im­ provement Cooperative (NWTIC) and the USDA Forest Service Pacific Northwest Research Station (PNWRS) ini­ tiated a study to explore the growth trajectories and produc­ tivity of genetically improved Douglas-fir stands and their relation to predicted genetic gains as estimated from prog­ eny test data. This is a long-term study designed to answer questions of genetic differences in stand-level growth and productivity as a function of increasing competition and stand development. Results will be important for develop­ ing growth models that account for genetic improvement. Early measurements of this study provide some insight into the means and variability of realized genetic gains before appreciable competition has occurred. The objectives of this WJAF 19(3) 2004 195 article are to: (1) compare early realized gains under oper­ ational conditions with gains predicted from breeding val­ ues estimated from progeny tests; and (2) determine the number of replicates needed to find statistically significant differences between blocks of improved and unimproved trees. Results from this assessment are important for quan­ tifying early growth and establishment of genetically im­ proved stands and for guiding the experimental design of additional realized gain trials and other silvicultural trials. Given the increasing interest in large-plot trials to quantify gains from silvicultural treatments and the high cost of establishing such trials, it is important to provide some indications of how many replicates are needed to show statistically significant differences of a given magnitude. Materials and Methods Parents for the realized genetic gain trials came from the Molalla breeding zone located in the Cascade foothills southeast of Portland, OR. The breeding zone encompasses an area of approximately 70 km north-south by 35 km east-west and a range of elevations between 275 and 850 m. The first-generation tree improvement program tested the wind-pollinated progeny of 372 parents on eight test sites representative of the breeding zone. Parents used for the improved populations in the realized genetic gain trials were selected based on the 15-year-old stem volume index (de­ fined as height X diameter2) of offspring planted at eight progeny tests (as well as a few other criteria such as the availability of pollen and female strobili). Breeding values of parents were calculated by using best linear prediction procedures as described by White and Hodge (1989). For comparison of predicted genetic gains to realized genetic gains, parental breeding values were determined for height, diameter at breast height (dbh), and stem volume at age 7, 5 years after planting, based on data from six of the eight progeny test sites (two sites did not have data at age 7). The predicted genetic gain for a cross was calculated as the average breeding values of the two parents. Although this procedure does not allow for specific combining effects, we assumed that these effects average to zero given enough parents in an improved population. Assuming that the six progeny test sites are representative of the breeding zone, the predicted percentage genetic gain is the mean breeding value of all crosses relative to the overall mean of the six sites. The proportion of trees of each cross in the realized genetic gain trials, however, was unequal. Thus, to compare predicted and realized genetic gains, the genetic gains pre­ dicted in the realized gain trials were weighted by the proportion of live trees in each cross. Two improved populations were chosen to provide mul­ tiple levels of genetic gain for comparing realized and predicted gains as a function of levels of improvement. An elite population was created using single pair matings of 20 top parents, and an intermediate population was created using single pair matings of 20 parents of somewhat lower ranking than the top parents. The goal for the intermediate population was to aim for a genetic gain in stem volume of 196 WJAF 19(3) 2004 about half that of the elite population. The unimproved population was a random selection of 50 trees collected specifically for this study from naturally regenerated stands well distributed throughout the breeding zone. The unim­ proved population is assumed to represent both the average genetic quality of trees that would be used for reforestation in the absence of tree improvement and the original base populations from which selections were made. These are expected to be equal because parent trees in the base pop­ ulation were roadside selections chosen with little emphasis on growth superiority. The realized genetic gain trials were planted in 1997 at five sites within the breeding zone. The five sites are rep­ resentative of environments from which parents were se­ lected and in which improved trees are being planted. Ele­ vations ranged from 400 m at the Mill City and Colton sites to 760 m at the Silver Falls site. All sites were clearcut harvested during the year before test establishment. Com­ peting vegetation was operationally treated with herbicide prior to planting and as needed during the years following planting. At each site, the three genetic quality types (elite, inter­ mediate, and unimproved) were planted at each of two densities. In the low-density treatment, 772 trees/ha were planted at a spacing of 3.6 X 3.6 m. The low-density treatment was chosen to represent operational conditions without early thinning. In the high-density treatment, 3086 trees/ha were planted at a spacing of 1.8 X 1.8 m. The high-density treatment was chosen to allow consideration of density effects and the interaction with genetics, as well as to provide some early results by promoting stand competi­ tion effects at an earlier age. The experimental design at each site was a split plot design with density treatments occupying the whole plots, and genetic quality types occu­ pying the split plots. Each split-plot had 100 trees arranged in a 10 X 10 tree square. An additional outside row of trees of the same genetic quality type was included as a buffer between split-plots, and an additional buffer row was in­ cluded between different planting densities and around the outside of the study area. Seedlings from each family were randomly assigned to planting spots, genetic quality types to split plots, and densities to whole plots. Six replications were planted at each site. Three-year-old seedlings were planted in Feb. and Mar. 1997. The seedlings were grown for 1 year in containers and 2 years as transplants in a bare root nursery. Total height and dbh were measured in fall 2001 after the trees had completed five growing seasons. Stem volume index was calculated as height X dbh2. Per­ centage of survival was determined for each split-plot. Statistical analyses were performed using SAS and the general linear models (GLM) procedure (SAS Institute Inc. 1999). The linear model was: y ijkl = J + Li + Ri(j) + Sk + LSik + 8ijk + Gl + LGil + SGkl + LSGikl + Eijkl where Li is the effect of the ith test site location, Rij is the effect of the jth replication within the ith location, Sk is the effect of the kth spacing treatment, Gl is the effect of the lth genetic population treatment, 8ijk is the whole-plot error, and Eijkl is the split-plot error. The other terms are the corresponding interaction terms. The effects of genetic pop­ ulations and spacings were regarded as fixed, whereas the effect of test site locations was regarded as random. The error terms for testing main effects and interactions are given in Table 1. We also tested two nonorthogonal con­ trasts between specific genetic populations: (1) the elite population versus the unimproved population; and (2) the intermediate population versus the unimproved population. Mean squares for some of the interaction sources of varia­ tion may be pooled into the split-plot error when those interactions are clearly nonsignificant (e.g., P > 0.25) (Sokal and Rolf 2001). When this is done, more degrees of freedom are available for testing the differences between genetic populations, resulting in smaller P values and a greater likelihood that differences among genetic popula­ tions are real (e.g., the P value for dbh decreases from 0.053 to 0.016 for differences among the three genetic popula­ tions). To simplify presentation of results, we chose to present all P values for mean squares not pooled; the inter­ pretation of the results does not change—tests significant at P < 0.10 after pooling were also significant prior to pool­ ing. We also considered differences between genetic popu­ lations at each site. The linear model in that case is as above but without the main effect and interaction terms that in­ clude test site locations. We determined the number of replicates required to detect statistically significant differences in height and di­ ameter between improved and unimproved populations us­ ing procedures outlined in Odeh and Fox (1991). Because we are primarily interested in comparing the improved versus unimproved, we redid the analyses of variance ex­ cluding the intermediate treatment to estimate variance components. The genetic population X site variance com­ ponent was near zero (F = 1.00, P = 0.41 for height; F = 1.09, P = 0.37 for diameter); thus, it was pooled into the residual sums of squares, and differences between the two populations were tested against the pooled residual mean square. The pooled residual mean square was used to esti­ mate the sample sizes required to detect a range of differ­ ences between improved and unimproved populations with a power of 0.80 and a = 0.01, 0.05, and 0.10. The results are presented in graphical form as the number of replicates required to detect a significant percentage difference be­ tween improved and unimproved populations for a = 0.01, 0.05, and 0.10. Results Overall Analyses of Variance Differences among the three genetic populations were statistically significant at a level of P < 0.10 (Table 1); trees in the elite population were larger than those in the inter­ mediate population, which were larger than those in the unimproved population (Tables 2– 4). Differences among test sites were large and highly statistically significant (Ta­ ble 1), with differences in height and diameter of about 100% between the fastest and slowest growing sites, and differences in volume of about 600% (Tables 2– 4). Trees Table 1. Results from the analyses of variance for differences in height, dbh, and stem volume index for test sites, spacings, genetic populations, and their interactions. Source of variation Error term for F test Degrees of freedomb Test site location (L) Spacing (S) Genetic population (G) SXL GXS GXL GXSXL Replicates within locations (R) SXL GXL S X R (whole plot error) GXSXL G X R (split plot error) G X R (split plot error) 4, 24 1, 4 2, 8 4, 24 2, 8 8, 96 8, 96 a b a Height dbh Volume index F P F P F P 67.62 8.00 4.67 1.99 2.34 1.51 1.21 <0.0001 0.05 0.05 0.13 0.16 0.16 0.30 52.41 2.52 4.35 2.24 0.95 1.06 0.95 <0.0001 0.19 0.05 0.09 0.43 0.40 0.48 30.93 1.23 3.69 4.12 1.40 1.56 0.70 <0.0001 0.33 0.07 0.01 0.30 0.15 0.69 Effects of genetic populations and spacings were regarded as fixed, and the effect of test site locations was regarded as random. Degrees of freedom in numerator and denominator for F test. Table 2. Least square means for height of coastal Douglas-fir 5 years after planting in the northern Oregon Cascades. Within sites Across populations (cm) Elite population (cm) Intermediate population (cm) Unimproved population (cm) Percentage difference of elite vs. unimproved P-value for difference of elite vs. unimproved Across sites Colton Estacada Mill City Molalla Silver Falls 182 191 184 180 5.9 203 209 206 194 7.8 181 187 171 185 1.3 262 270 262 253 6.6 137 138 139 133 4.1 143 150 144 136 10.3 0.02 0.01 0.78 0.08 0.25 0.01 WJAF 19(3) 2004 197 Table 3. Least square means for dbh for coastal Douglas-fir 5 years after planting in the northern Oregon Cascades. Within sites Across populations (cm) Elite population (cm) Intermediate population (cm) Unimproved population (cm) Percentage difference of elite vs. unimproved P-value for difference of elite vs. unimproved Across sites Colton Estacada Mill City Molalla Silver Falls 1.35 1.45 1.36 1.34 7.9 1.57 1.63 1.59 1.47 11.2 1.39 1.47 1.29 1.41 4.5 2.20 2.33 2.15 2.10 10.8 0.93 0.94 0.94 0.90 3.7 0.83 0.85 0.82 0.81 4.9 0.02 0.02 0.54 0.11 0.54 0.43 Table 4. Least square means for stem volume index (height x dbh2) for coastal Douglas-fir 5 years after planting in the northern Oregon Cascades. Within sites Across populations (cm3) Elite population (cm3) Intermediate population (cm3) Unimproved population (cm3) Percentage difference of elite vs. unimproved P-value for difference of elite vs. unimproved Across sites Colton Estacada Mill City Molalla Silver Falls 655 791 659 619 27.8 789 869 810 689 26.1 558 651 462 561 15.9 1694 1987 1619 1475 34.8 238 262 240 212 23.8 170 186 167 157 18.5 0.03 0.03 grown at the tight spacing were 6% taller and 6% larger in diameter than trees grown at the wide spacing, although only height was statistically significant (Table 1). Most interactions were not statistically significant, except for the interaction of spacing and test site for both volume (P = 0.01) and diameter (P = 0.09). Percentage of survival was greater for the elite popula­ tion (91%) and the intermediate population (92%) compared to the unimproved population (86%) (statistically signifi­ cant at P < 0.05). Survival varied among sites. Survival at Molalla was the lowest at 83%. Survival at the other four sites ranged from 90 to 93%. Realized and Predicted Genetic Gains Realized genetic gains for the elite population (the differ­ ence between elite and unimproved) were 5.9% for height, 7.9% for diameter, and 27.8% for stem volume (Tables 2– 4). Realized gains for the intermediate population were 2.4% for height, 1.5% for diameter, and 6.5% for volume. Realized and predicted genetic gains were similar, particularly for the elite population (Figure 1). For example, predicted gains for height after five growing seasons for the elite crosses was 7.5% as compared to actual realized gains of 5.9%. Realized genetic gains varied greatly among individual test sites (Tables 2– 4). Height differences between the elite and unimproved popula­ tions were greatest at the Silver Falls, Colton, and Mill City sites. Diameter differences were greatest at the Colton and Mill City sites. The Estacada site was the poorest site for distin­ guishing differences between the elite and unimproved popu­ lations. Compared to the analyses across all sites, detecting statistically significant differences was more difficult at each 198 WJAF 19(3) 2004 0.41 0.07 0.24 0.34 individual site; the lower sample size probably resulted in a poorer estimate of the means, and the lower number of degrees of freedom in the error (20 df) made it more difficult to declare differences significant. Sample Size Required to Detect Significant Differences The sample sizes required to detect a significant differ­ ence between improved and unimproved populations is quite sensitive to the desired a level and to the expected difference when those differences are relatively small (Fig­ ures 2 and 3). For example, the number of replicates re­ quired to detect a significant difference of 6% between the heights of improved and unimproved populations (as ob­ served in this study) at a = 0.05 was 33, whereas the number of replicates required to detect the same difference was 26 at a = 0.10 and 52 at a = 0.01 (Figure 2). If height differences were just 1% greater (7 instead of 6%), 25 replicates would be required instead of 33 at a = 0.05. Larger numbers of replicates were required to detect signif­ icant differences in diameter and volume (which is largely a function of diameter) of the magnitudes observed in this study. At a = 0.05, 52 replicates were required to detect a significant difference of 8% in diameter, and 46 replicates were required to detect a significant difference of 28% in volume. Discussion Results from this study indicate that progress from se­ lection and breeding of Douglas-fir is readily achievable. Realized genetic gains 5 years after planting were close to those predicted based on results from earlier progeny tests at Figure 2. Number of 100-tree block-plot replicates required to detect a statistically significant difference (percentage) in height 5 years after planting between improved and unim­ proved populations at a = 0.01, 0.05, and 0.10. Figure 1. Realized and predicted genetic gains (percentage) for height, diameter, and stem volume for two genetically im­ proved populations of coastal Douglas-fir 5 years after planting in the northern Oregon Cascades. six other sites within the breeding zone. Although blockplot genetic gain trials are rare due to the expense of establishing such large trials, realized genetic gains have been demonstrated for several species, including radiata pine (Pinus radiata) (Eldridge 1982, Carson et al. 1999), loblolly pine (P. taeda) (Martin and Shiver 2002), and ponderosa pine (P. ponderosa) (McDonald et al. 1999). In a similar set of trials in British Columbia, Woods et al. (1995) found that genetically improved Douglas-fir trees were sig­ nificantly taller 3 years after planting compared to an un­ improved wild stand collection. Most realized gain trials are still young: only the radiata pine trials are beyond half-rotation. To extrapolate results from realized genetic gain trials to other seed lots, the genetic value of the parents must be known. In most cases, the genetic value of the parents comprising a seed lot will be estimated as their breeding values based on progeny tests. For this reason, comparing Figure 3. Number of 100-tree block-plot replicates required to detect a statistically significant difference (percentage) in dbh 5 years after planting between improved and unimproved popu­ lations at a = 0.01, 0.05, and 0.10. realized genetic gains and predicted genetic gains from progeny tests is important. In New Zealand, a system for indicating genetic value has been devised in which a seed lot is given a “GF rating” that combines information on the growth and form characteristics of parents as determined in progeny tests. Carson et al. (1999) have proposed using genetic-gain multipliers to adjust existing radiata pine growth models to predict the growth of improved seed lots having different GF ratings. In British Columbia, a “genetic worth” is assigned to seed orchard seed lots that represents the expected genetic gain for a trait at rotation age (Xie and Yanchuk 2003). It uses the average breeding values of the parental trees and incorporates decreased genetic gains be­ tween rotation and selection ages due to imperfect age-age genetic correlations. Our results provide confidence that genetic gains predicted from progeny tests may be used to predict realized genetic gains in operational plantations, at least through early stand development. WJAF 19(3) 2004 199 Realized genetic gains in tests or in operational planta­ tions may differ from predicted genetic gains for several reasons. Realized and predicted gains may differ simply because poor experimental design could lead to poor pa­ rameter estimates. Comparing parental means in the first generation of the Molalla program was complicated by a design in which parents were allocated to different sets, but sets were not included within the same replication. Realized and predicted gains may differ as a result of sampling effects or random error. Environmental variation within a site may lead to poor estimates of genetic gains. For this reason, researchers arrange plots in replicated blocks and attempt to minimize environmental variation within a block. Realized gain trials that use large plots and mimic opera­ tional conditions often have greater error variances as a result of increased variation within replications, increased browse, and less stringent control of competing vegetation. In our study, sites with considerable animal damage (Mo­ lalla, Silver Falls) or with patchy competing vegetation, such as scotch broom (Cytisus scoparius) (Estacada), had the highest coefficients of variation for the split-plot error. Environmental variation among sites may also lead to poor estimates of genetic gains and poor correspondence between realized and predicted gains if sites are not representative of the breeding and planting zones. Furthermore, genotype X environment interaction may contribute to differences in genetic gains estimated from progeny tests and realized gain trials. Genotype X environment interaction may involve differences in environments among locations, among years, and in different silvicultural regimes. Specific combining effects may also lead to crosses that differ from the mean of both parents as predicted in progeny tests. Because specific combining effects should average out given enough crosses, we chose to cross at least 20 parents to create a genetic population in our study. Poor estimates of predicted and realized gains may also arise as a consequence of age-age correlations that are much less than one. Realized gains from seed orchards may differ from those predicted as a result of pollen contamination or unequal, unknown contri­ butions of parents to the improved population resulting from differential pollen and flower production. Finally, realized genetic gains may be less than predicted gains after the onset of stand competition due to the selection of highly competitive genotypes in mixed-family progeny tests. Com­ petitive genotypes planted together might be expected to compete for the same resources in the same space and time, thus leading to growth that would be less than when in competition with less competitive genotypes. Selection for crop ideotypes with attributes that lead to high stand pro­ ductivity has been suggested as an alternative to the unin­ tentional selection for highly competitive genotypes (Donald 1968, Cannell 1978). The interaction between genetic population and test site was small and statistically nonsignificant despite a wide range of test environments including lower elevation-higher productivity sites and higher elevation-lower productivity sites. This finding is not surprising given that first genera­ tion breeding zones were conservative (Johnson 1997); 200 WJAF 19(3) 2004 thus, we would expect little family X site interaction over a wide range of families, let alone interactions of means of groups of families with sites. These results indicate that future gain trials do not necessarily need to sample a wide range of sites for comparing improved and unimproved populations, although sites should still be representative of the environments to be planted. The genetic population X spacing interaction was also small and statistically nonsig­ nificant, although little competition has occurred between trees to date. Previous studies did not find a large interaction between spacings and families (Campbell et al. 1986, St. Clair and Adams 1991); thus, we might not expect an interaction for means of groups of families. The findings of greater growth at tighter spacings has been observed previ­ ously in spacing trials throughout the region (Scott et al. 1998). Many replicates are required to detect statistically sig­ nificant differences between improved and unimproved stands of magnitudes that might be expected in a typical tree improvement program. Results from our study indicate that 20 – 40 replicates are needed to detect significant differences in early height growth, and 30 –50 replicates are needed to detect significant differences in early diameter growth. Be­ cause the interaction of genetic population and site was small and nonsignificant, replicates may be allocated either among sites or within sites. If one were more interested in characterizing the mean and variation in productivity of improved stands across a breeding zone, allocating repli­ cates to more sites would be desirable. If one were more interested in a good estimate of realized genetic gain at a site to explore the relation between gain and site character­ istics, allocating more replicates within sites would be de­ sirable. In both cases, practical restrictions due to the num­ ber and size of available sites are likely. It should be noted that if the interaction of genetic population and site was large, then it would become the error term, and one would then want to allocate the number of replicates across more sites to maximize the probability of finding a significant difference. A significant and large site X genetic population interaction, however, would indicate that breeding zones were poorly defined, which is unlikely for Douglas-fir in the Pacific Northwest where breeding zones are considered conservative. We measured trees at an early age before appreciable tree-to-tree competition had occurred. At later ages and stages of stand development, estimates of realized genetic gains and comparisons to gains predicted from progeny tests would become more meaningful. Furthermore, the overall objectives of this study are to explore growth trajectories and incorporate them into growth models that consider the genetic value of specific sets of known families to project the productivity of improved stands at anticipated rotation ages. These objectives require multiple measurements as the blocks of trees age and begin to compete. Conclusions Achieving realized genetic gains in a study like this that are very close to genetic gains predicted from progeny tests are encouraging. It provides a level of faith in first-gener­ ation testing and selection procedures despite statistical limitations, experimental error, and sampling of a different set of sites with somewhat different management proce­ dures applied to them. The wide range of realized genetic gains among individual sites, however, gives cause for concern over trying to extrapolate results from a single site or too few replicates. 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