PLos one OPEN 3 ACCESS Freely available online Algivore or Phototroph? Plakobranchus ocellatus (Gastropoda) Continuously Acquires Kleptoplasts and Nutrition from Multiple Algal Species in Nature Taro M aeda1'2, Euichi Hi ro se3, Y osh ito Chikaraishi2, Masaru Kawato2, Kiyotaka Takishita2, Takao Y osh ida1'2, H eroen V erb ru ggen 4'5, Jiro Tanaka1, Shigeru Shim am ura2, Yoshihiro Takaki2, M asashi Tsuchiya2, Kenji Iwai6, Tadashi M aruyam a1'2* 1 G raduate School o f Marine Science and Technology, Tokyo University of Marine Science and Technology, 4-5-7, Konan, Minato-ku, Tokyo, Japan, 2 Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan, 3 D epartm ent of Chemistry, Biology and Marine Science, Faculty o f Science, University o f th e Ryukyus, Nishihara-cho, Okinawa, Japan, 4Phycology Research Group, Ghent University, Krijgslaan 281 (S8), Ghent, Belgium, 5 School o f Botany, The University o f Melbourne, Victoria, Australia, 6 Okinawa Prefectural Fisheries and Ocean Research Center, 1-3-1 Nishizaki, Itoman-shi, Okinawa, Japan Abstract T he se a slug P lakobranchus ocellatus (S acoglossa, G a stro p o d a ) re ta in s p h o to sy n th e tlc a lly a ctiv e c h lo ro p la sts from In g e sted a lg a e (functional k lep to p lasts) In th e ep ith elial cells o f Its d ig estiv e g la n d for u p to 10 m o n th s. W hile Its fe e d in g b e h av io r has n o t b e e n o b se rv e d In n a tu ra l h a b ita ts, tw o h y p o th e s e s h av e b e e n p ro p o se d : 1) a d u lt P. ocellatus u ses k le p to p la s ts to o b ta in p h o to s y n th a te s a n d nutritionally b e h a v e s as a p h o to a u to tro p h w ith o u t re p le n ish in g th e k lep to p lasts; o r 2) It b e h a v e s as a m lx o tro p h ( p h o to a u to tro p h a n d h e rb iv o ro u s c o n su m e r) a n d re p le n ish e s k le p to p la sts c o n tin u a lly o r periodically. To a d d re ss th e q u e s tio n o f w hich h y p o th e sis Is m o re likely, w e e x a m in e d th e so u rc e a lg a e for k le p to p la sts a n d te m p o ra l c h a n g e s In k le p to p la st c o m p o s itio n a n d nu tritio n al c o n trib u tio n . By c h ara cte riz in g th e te m p o ra l diversity o f P. ocellatus k le p to p la sts using rbcL s e q u e n c e s , w e fo u n d th a t P. ocellatus h a rv ests k le p to p la sts from a t least 8 d iffere n t s lp h o n o u s g re e n algal sp ecies, th a t k le p to p la sts from m o re th a n o n e sp e c ie s a re p re s e n t In e a c h Individual se a slug, a n d th a t th e k le p to p la st c o m p o s itio n differs tem p o rally . T h ese results s u g g e s t th a t wild P. ocellatus o fte n fe ed o n m ultip le sp e c ie s o f slp h o n o u s a lg a e from w hich th e y c o n tin u a lly o b ta in fresh c h lo ro p lasts. By e stim a tin g th e tro p h ic p o sitio n o f wild a n d sta rv e d P. ocellatus using th e sta b le n itro g e n Iso to p lc c o m p o s itio n o f a m in o acids, w e s h o w e d th a t d e s p ite th e a b u n d a n c e o f k lep to p lasts, th e ir p h o to s y n th a te s d o n o t c o n trib u te g re atly to th e n u tritio n o f wild P. ocellatus, b u t th a t k le p to p la st p h o to s y n th a te s form a significant so u rc e o f n u tritio n for sta rv ed se a slugs. T he h e rb iv o ro u s n a tu re o f wild P. ocellatus Is c o n siste n t w ith Insights from m o lecu lar a n aly se s In dicating th a t k le p to p la sts a re fre q u e n tly re p le n ish e d from In g e sted a lg a e, leading to th e c o n clu sio n th a t natu ral p o p u la tio n s o f P. ocellatus d o n o t rely o n p h o to sy n th e s is b u t m ainly o n th e d ig e s tio n o f In g e ste d algae. C itation : Maeda T, Hirose E, Chikaraishi Y, Kawato M, Takishita K, e t al. (2012) Algivore or Phototroph? Plakobranchus ocellatus (Gastropoda) Continuously Acquires Kleptoplasts and Nutrition from Multiple Algal Species in Nature. PLoS ONE 7(7): e42024. doi:10.1371/journal.pone.0042024 Editor: Ross Frederick Waller, University o f M elbourne, Australia Received April 11, 2012; A ccepted June 29, 2012; Published July 25, 2012 C opyrigh t: © 2012 Maeda e t al. This is an open-access article distributed under th e term s of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided th e original author and source are credited. F u n d in g : The present research was supported by a grant from th e Mikimoto Fund for Marine Ecology, a Grant-in-Aid for a Japan Society for th e Promotion of Science Fellow (No. 20234567 to T. Maeda), a grant from th e Research Foundation Flanders, a grant from the Australian Research Council (FT110100585 to H. Verbruggen), and a grant from th e Okinawa Intellectual Cluster Program (to T. Maruyama). The funders had no role in study design, data collection and analysis, decision to publish, or preparation o f th e manuscript. C om peting Interests: The authors have declared th a t no com peting interests exist. * E-mail: tadashim@ jamstec.go.jp feed o n Halimeda tuna [6—8] a n d algae ingested b y Oxynoe antillarum a re lim ited to 2 species: Caulerpa racemosa a n d C. sertularioides [7]. Kleptoplasts retain p hoto synthetic activity for a few days to several m onths in some sacoglossan species [10,11], L aboratory experim ents showed that the photo synthetic products o f kleptoplasts (e.g., sugars a n d am ino acids) are transferred to a n d used by sea slugs w hen they are starved [12-14], This “functional kleptoplasty” [15] perm its sea slugs to have a m ixotrophic lifestyle involving photosynthesis via kleptoplasts a n d hetero trophy by feeding on algae [16]. How ever, the relative im portance o f these feeding m echanism s un d er natural conditions has not been characterized in detail. T h e reten tio n p e rio d o f functional kleptoplasts in the tropical Indo-Pacific species Plakobranchus ocellatus v a n H asselt, 1824 has Introduction Since the discovery o f “ chloroplast reten tio n ” in Elysia atroviridis by K aw aguti & Y am asu [1], it has b e en w idely accepted th a t m any species o f sacoglossan sea slugs (Sacoglossa, G astropoda, M ollusca) retain chloroplasts o f ingested algae in digestive gland cells [2]. A sequestered chloroplast is called a “kleptoplast” [3], T h e klepto­ plasts are not passed o n to progeny, so new kleptoplasts m ust be a cquired in each g eneration [4-7]. Food algae o f sacoglossan species have b e e n studied in lab o rato ry feeding experim ents. M ost sacoglossan species have a fairly high feeding preference for one o r a few algal species [7-9], a n d hence their kleptoplasts com e from a lim ited n u m b er o f source algae. F o r exam ple, Bosellia mimetica only PLoS ONE I w w w .p lo s o n e .o rg 1 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus b e en estim ated to b e u p to 10 m o n th s from lin ear ex trapolation o f the photosynthetic activity m easu red by pulse am plitude m o d u ­ lation (PAM) fluorom etry [10,17]. T h e n a tu ra l algal source species for kleptoplasts in P. ocellatus have n o t b e en d e term in ed [17,18], b u t P. ocellatus are know n to feed o n m ultiple siphonous green algae o f the o rd e r Bryopsidales u n d e r artificial conditions, i.e., Chlorodesmis hildebrandtii, Rhipidosiphon javensis , Caulerpella ambigua , a n d Bryopsis sp. [18-20], It has b e en p roposed th a t once the sea slug acquires functional kleptoplasts, they are not replenished [21]. T his hypothesis is based o n the know ledge th a t the chlorophyll contents o f kleptoplasts re m a in unaffected in starved P. ocellatus for 27 days u n d e r 500 ft-candle lighting (= 1 0 9 .5 pinoi p hotons m ~ s 1 equivalent o f incandescent light) [10], th a t P. ocellatus are m ostly found o n sandy beaches w here poten tial food algae are ra re [21], a n d th a t feeding b e h av io r has never b e en observed in th eir n a tu ra l habitats [21]. H ow ever, D u n lap [20] re p o rte d th at the chlorophyll c ontent a n d 14C -inorganic carb o n fixation rate dim inished after 2 m onths o f incubation u n d e r o u td o o r lighting conditions, a n d concluded th a t kleptoplasts in P. ocellatus m ust be replaced continually o r at periodic intervals to replace those th at have degenerated. T hese two hypotheses re m a in to b e exam ined. Before addressing w hich hypothesis is m ore likely, a n u m b e r o f questions m ust b e answ ered. First, w hich algae a re the sources o f kleptoplasts for the sea slugs? Second, do kleptoplasts in each P. ocellatus individual derive from a single or m ultiple algal species? Finally, to w h at degree does the sea slug’s n u tritio n d e p en d on kleptoplast photosynthesis a n d o n algivory? T o address these questions, w e identified the source algae o f kleptoplasts based o n sequences o f the R u B isC O (ribulose 1,5bisphosphate carboxylase/oxygenase) large subunit gene (rbcL), w hich is en co d ed in the chloroplast genom e [9,22,23] a n d has b e en sequenced for a w ide range o f siphonous green algae [22]. W e assessed the tem p o ral kleptoplast com position in field-collected P. ocellatus to determ in e w h eth er the sea slugs acquire kleptoplasts only once o r repeatedly a n d estim ated the trophic positions o f the sea slugs in th eir n a tu ra l h a b ita t a n d d u rin g starvation in the lab o ra to ry based o n the n itrogen isotopic com position o f glutam ic acid a n d phenylalanine [24,25], w hich can b e expected to serve as a proxy o f the n utritional con trib u tio n o f functional kleptoplasts to the sea slugs. B ased on this com b in atio n o f techniques, we aim ed to gain insight into the ecological role o f functional kleptoplasty in n a tu ra l circum stances. T a b le 1. M aterials and M ethods Sampling and DNA extraction o f P. ocellatus W e collected P. ocellatus for D N A analyses b y snorkeling or scuba diving in a 2 0 0 -m x 2 0 0 -m near-shore a rea off T enija, O kinaw a, J a p a n (26U3 3 'N 128"08'E). N o perm ission was req u ired for sam ple collection. Sam ples w ere taken each m o n th from A pril to D ecem ber 2005, a n d from M ay 2007 to A pril 2008. H ow ever, the sea slug was seldom found in w inter (D ecem ber 2005 a n d D ecem b er 2007 to A pril 2008). C ollected sea slugs w ere fixed in 99% ethanol at room tem p eratu re a n d preserved a t —30"C until use. W ith a D N easy blood a n d tissue kit (Qiagen, H ilden, G erm any), the D N A o f P. ocellatus was extracted from p a rt o f the parapodial tissue (about 5 x 5 x 2 nini) (Figure SI), w hich included the digestive gland (retaining kleptoplasts) b u t not the stom ach [26], A lthough a previous study show ed chloroplasts on the outside o f the stom ach cells o f P. ocellatus, no such “ extracellular” chloroplasts were observed in the cavity o f the parapodial digestive gland [26], a n d hence we believe th at the sequences obtained did not include contam inant D N A from extracellular chloroplasts in the digestive tract. Genetic analysis o f P. ocellatus Because it has b e en p ro p o sed th a t P. ocellatus is a cryptic species com plex [19,27], we checked the genetic hom ogeneity o f the collected individuals by sequencing the m itochondrial 16S rR N A gene (m tl6 S rD N A ). T o identify the source algae o f the kleptoplasts, rbcL in 7 individuals o f P. ocellatus collected in nonconsecutive m onths w ere also sequenced. F ragm ents o f rbcL a n d o f m tl6 S rD N A w ere am plified b y P C R w ith th eir respective p rim e r sets (T able 1). T h e P C R m ixture (50 pi) c o n ta in ed 5 pi o f 10 x E x T a q Buffer (T akara Bio, O tsu, Ja p a n ), 4 pi o f d N T P m ixture (10 m M ), 0.2 pi o f T a K a R a E x T a q (T akara Bio), 1 pi o f the tem plate D N A , a n d 39.8 pi o f H oO . T h e th erm al cycle was com pleted u n d e r the follow ing conditions: initial d é n atu ratio n at 96"C for 1 m in follow ed b y 35 cycles o f 20 s at 96"C , 45 s at 5 0 -5 5 "C , a n d 1 m in 45 s—2 m in a t 72"C. A m plicons o f rbcL a n d m tl6 S rD N A w ere purified using a W izard SV G el a n d a P C R Clean-ETp System (Prom ega, H eidelberg, G erm any). Purified am plicons o f the rbcL genes w ere cloned using a T O P O T A C loning K it w ith T o p 10 E . coli (Invitrogen, C arlsbad, CIA) according to the m an u fa ctu re r’s instructions. T h e insert size was checked w ith P C R , a n d am plicons w ith the expected size w ere Prim er list for s e q u e n c in g a n d T-RFLP. Gene P rim er nam e Sequences (5 - 3 ) Reference 16S rD N A (on P. ocellatus (mitochondria) 16sar-F*f CGC CTG TTT ATC AAA AAC AT Palumbi e t al. [56] 16sbr-H*f CCG GTC TGA ACT CAG ATC ACG T Palumbi e t al. [56] rbc1*f CCA MAA ACW GAA ACW AAA GC Hanyuda e t al. [57] U3-2*f TCT TTC CAA ACT TCA CAA GC Hanyuda e t al. [57] 2 if TTG GTW ACW GAA CCT TCT TC Hanyuda e t al. [57] rbc5f GCT TGW GMT TTR TAR ATW GCT TC Hanyuda e t al. [57] trbcL-F* CTK GCD GYD YTT MGD ATG ACA C This study trbcL-R* MRG CWA RWG AAC GTC CTT CAT T This study rbcL (on kleptoplasts and chloroplasts) Prim ers used fo r PCR and sequencing o f m ito c h o n d ria l 16S rD N A and k le p to p la st (chlo ro plast) rbcL genes, and fo r T-RFLP analysis o f rb c L -Prim ers for PCR. t Prim ers fo r sequencing. ^Primer fo r T-RFLP. doi:10.1371 /journal.pone.0042024.t001 PLoS ONE I w w w .p lo s o n e .o rg 2 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus purified b y S a p /E x o l digestion. T h e sequencing reactions w ere p erfo rm ed using a BigDye T e rm in a to r v3.1 Cycle S equencing K it (Applied Biosystems, Foster City, CIA) w ith the prim ers used for the P C R experim ents a n d two internal prim ers (T able 1). T h e nucleotide sequences w ere d eterm in ed w ith a n ABI 3130x1 S equencer (Applied Biosystems). If the genetic distance betw een two o r m ore rbcL sequences was less th a n 0.001 in/»-distance, those sequence differences w ere considered as a P C R e rro r a n d the m in o r different sequences w ere excluded from furth er analyses. U sing the B lastn search a n d tree reconstruction o n partial sequences [28], two ch im era sequences w ere d etected a n d excluded from fu rth er processing. Purified am plicons o f sea slug m tlO S rD N A w ere directly sequenced w ith the prim ers used for the P C R experim ents (T able 1). T h e sequencing was p erfo rm ed as described above. [29] w ith the “— a u to ” option. A m biguously aligned sites w ere rem oved autom atically using trim A l version 1.2 [30] w ith the “a u to m a te d l” option. T h e m ultiple sequence alignm ent finally show ed 1254 positions. Phylogenetic analyses w ere p erform ed w ith M E G A S [31] for the neighbor-joining (NJ) m ethod, a n d w ith R A xM L version 7.2.8 [32] for the m axim um likelihood (ML) m ethod. F or the N J m ethod, the m axim um com posite likelihood m eth o d for nucleotide sequences [33] was em ployed. K akusan4 [34] was used to select the a p p ro p ria te m odel o f nucleotide evolution for M L analysis, a n d the general tim e-reversible m odel [35] in co rp o ratin g am ong-site rate v a riation a p p ro x im ated by a discrete g am m a distribution w ith 4 categories (G T R + T ) was chosen. T h e n o n p a ram etric b o o tstrap was used to exam ine the robustness o f phylogenetic relationships (1000 pseudoreplicates for N J a n d 300 for ML). Sampling and genetic analysis o f algae Terminal restriction fragm ent-length polym orphism analysis o f rbcL from P. ocellatus In o rd e r to e x p an d the reference d ataset o f rbcL sequences o f potential source algae from the study region, species belonging to the siphonous green algal o rd e r Bryopsidales w ere collected at T enija, Bise (2 6 °4 2 'N 127°52'E ), Seragaki (2 6 °3 0 'N 127°52'E ), a n d M a e d a (2 6 "2 6 'N 127"45'E ) in O kinaw a, at F aro de San R afael (2 4 "1 8 'N 110"20'W ) in M exico, a n d at A suncion Island (19"41'N 145"23'E ) in the M a ria n a Islands. N o perm ission was req u ire d for sam ple collection. T h e sam ples w ere fixed in 99% e thanol a n d kept a t —30"C until use. T h e species sam pled w ere Rhipidosiphon lewmanomontiae, Rhipidosiphon sp., Caulerpa subserrata, Halimeda borneensis, Chlorodesmis fastigiata, a n d Poropsis sp. W e pressed v oucher specim ens from p a rt o f each sam ple a n d deposited th em in the F ferbarium o f the C oastal B ran ch o f the N a tu ral Ffistory M useum a n d Institute, C h ib a (C M N H ) (specim en num bers C M N F F B A -6809-6816), J a p a n , or in the G h e n t F ferbarium , Belgium (G.008 a n d FIV1774). T h e D N A was extracted from the ethanol-fixed algal tissues w ith a D N easy b lood a n d tissue kit (Qiagen), a n Isoplant kit (N ippon G ene, T o y am a, Ja p a n ), o r a D N easy p lan t kit (Qiagen). T h en , algal rbcL genes w ere am plified by P C R a n d directly sequenced w ith the sam e prim ers used for P C R (Table 1) as described above. W e p erfo rm ed term inal restriction fragm ent-length polym or­ phism (T-RFLP) analysis [36] to assess the diversity o f kleptoplasts in the sea slugs a n d the seasonality o f their relative a b u n d an ce. T o avoid the biases o f the am plification efficiency o f P C R due to the h ig h /lo w m atch in g o f the prim ers, we new ly designed nested consensus prim ers for T -R F L P based o n the rbcL sequences o b tain e d (T able 1). T h e prim ers w ere designed to am plify the fragm ent including a specific restriction site for distinguishing different source algae o f the kleptoplasts. W e digested the rbcL regions o b tain e d from P. ocellatus w ith various restriction enzym es in silico using T R iF L e [37]. T a il (T herm o Fisher Scientific, W alth am , MA) was found to b e the m ost suitable to identify the m ultiple-source algal species o f kleptoplasts (T able 2). T h e rbcL fragm ents w ere am plified from the D N A tem plates o f P. ocellatus b y P C R w ith the fluoresceinated p rim e r trbcL -F a n d the nonfluoresceinated p rim e r trb cL -R (T able 1). T h e rm a l cycling was p erfo rm ed u n d e r the follow ing conditions: initial d é n atu ratio n at 96"C for 1 m in follow ed b y 35 cycles o f 20 s a t 96"C , 45 s at 57"C, a n d 1 m in a t 72"C. T h e com position o f the P C R m ixture was the sam e as th a t for clone sequencing. A m plicons in the reaction m ixtures (50 pi) w ere purified w ith a W izard SV G el a n d P C R C lean -U p System (Prom ega, M adison, W I). T h e purified am plicons w ere digested w ith 0.5 pi o f FastD igest T a il (Ferm entas, Vilnius, L ithuania) a n d th en 0.5 pi o f 10 x FastD igest Buffer (Ferm entas) in a total volum e o f 5 pi at 65 "Cl for 15 m in. T h e Phylogenetic analyses o f kleptoplast rbcL T h e rbcL sequences o b tain e d from P. ocellatus a n d algae w ere aligned w ith those o f Bryopsidales a n d D asycladales species in the D N A D a ta B ank o f J a p a n (DDBJ) using M A F F T version 6.818b T a b l e 2 . In silico T-RF le n g th s o f rbcL se q u e n c e s. C lade in Figure 1 P redicted T-RF length in silico (bp) T-R FLP-category§ A b b re via tio n (clade) Clade A (Proposis spp.)* 306 Proposis spp ./Halimeda borneensis Prsp/Habo (A/D) Clade B (Rhipidosiphon lewmanomontiae) 331 Rhipidosiphon lewmanomontiae Rhle (B) Clade C (Rhipidosiphon spp.) 366 Rhipidosiphon spp. Rhsp (C) Clade D (Halimeda borneensis)* 306 Proposis spp ./Halimeda borneensis Prsp/Habo (A/D) Clade E (Halimedineae spp. 1)* 138 Halimedineae spp. 1/Rhipiliaceae spp. Hasp 1/Risp (E/G) Clade F (Caulerpella spp.)* 191/291 Caulerpella spp. Casp (F) Clade G (Rhipiliaceae spp.)* 138 Halimedineae spp. 1/Rhipiliaceae spp. Hasp 1/Risp (E/G) Clade H (Halimedineae spp. 2) 260 Halimedineae spp. 2 Hasp2 (H) 'T-RF lengths of Proposis spp. and Halimeda borneensis were the same and indistinguishable. b"-RF lengths o f Halimedineae spp. 1 and Rhipiliaceae spp. w ere identical and indistinguishable. 5Caulerpella spp. was com posed of tw o subtypes having tw o distinct T-RFs (191 and 291 bp, respectively). §See Figures 3 and 4. doi:10.1371 /journal.pone.0042024.t002 PLoS ONE I w w w .p lo s o n e .o rg 3 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus dark) rhythm s. A fter incubation for 156 days (about 5 m onths), 3 individuals w ere ran d o m ly selected a n d dissected. T h e ir p a ra p o ­ dial tissues w ere also frozen a n d kept in liquid n itrogen until analysis. T h e n itrogen isotope analysis o f am ino acids was p erform ed according to the m eth o d o f C hikaraishi et al. [25]. P a rt o f the frozen p arap o d ial tissue o f each P. ocellatus individual was hydrolyzed in 12N HC1 a t 100"C. T h e hydrolysate was w ashed w ith H -hexane/dichlorom ethane (6:5, v/v ) to rem ove any hydrophobic constituents. A fter derivatization w ith thionyl c h lo rid e /2p ro p a n o l (1:4, v/v ) a n d subsequently w ith pivaloyl c h lo rid e / dich lo ro m eth an e (1:4, v /v ), the derivatives o f the am ino acids w ere extracted w ith n -h e x an e /d ic h lo ro m eth a n e (6:5, v /v ). T h e nitrogen isotopic com position o f each am ino acid was d e term in ed by gas ch ro m a to g ra p h y /c o m b u stio n /iso to p e ratio m ass spectrom etry using a D elta plus X P isotope ratio mass spectrom eter (T herm o F innigan M A T , B rem en, G erm any) coupled to a n 6890N gas c h ro m a to g ra p h (Agilent T echnologies, M assy, France) via com ­ bustion a n d red u ctio n furnaces. N itrogen isotopic com positions w ere expressed in 8 -notation against atm ospheric N 2 (air). T h e trophic position o f the organism was calculated from the nitrogen isotopic ratio in glutam ic acid a n d phenylalanine (T Po^/p^e value) w ith the form ida T P Glu/Phc = (815N Glu- 8 15N Phc- 3 .4 ) / 7 .6 + l [24], W e also d e term in ed the T P Glu/Phc value o f a giant clam , Tridacna crocea, h a rb o rin g a sym biotic dinoflagellate, zooxanthellae (Symbiodinium spp.) [41], a n d o f an identified kleptoplast source alga, R . lewmanomontiae. T h re e individuals o f T. crocea w ere collected off Sesokojim a, O kinaw a (2 6 "3 8 'N 127"52'E ) o n 19 N ovem ber 2011. A fter 3 days o f incubation w ithout feeding a n d light for tran sp o rt to the laboratory, the m antle tissues containing zooxanthellae a n d a d d u cto r m uscles w ithout zooxanthellae w ere dissected from each individual. T h e a d d u cto r m uscles w ere analyzed using the sam e m eth o d as for the tissue o f P. ocellatus. T o isolate zooxanthellae, m antles o f each individual w ere cut into pieces, hom ogenized w ith a polytron-type h om ogenizer (T-10 basic hom ogenizer, IK A , Staufen, G erm any) w ith 20 m l o f artificial seaw ater, a n d centrifuged at 750 Xg for 3 m in [42]. A fter d é can tatio n o f the supernatant, the pellet was suspended w ith 20 m l o f artificial seaw ater. T h e suspension was filtered th ro u g h a 20-pm m esh nylon cloth to rem ove host tissue debris a n d w ashed two tim es w ith 20 m l o f artificial seaw ater. Pelleted zooxanthellae w ere used for the am ino acid n itrogen isotopic analysis. A thallus o f R . lewmanomontiae was collected at the sam e site w ith P. ocellatus digestion p ro d u c t was m ixed w ith 9 pi o f H i-D i form am ide (Applied Biosystems) a n d 0.5 pi o f G S 1200 (Liz) (Applied Biosystems) a n d th en d e n a tu re d b y heating at 95"C for 2 m in. T h e m ixture was im m ediately chilled o n ice a n d th en electrophoresed w ith an ABI 3730x1 S equencer (Applied Biosystems). T -R F L P profiles w ere analyzed using G e n eM ap p e r ver. 3.7 (Applied Biosystems). T h e internal size standards in electropho­ resis gave a n indication o f the length o f the term in al restriction fragm ents (T-RFs) obtained. B ased o n the different lengths (base pairs [bp]) o f T -R F s, the source algae o f the kleptoplasts w ere distinguished. R elative am o u n ts o f the respective rbcL sequences w ere estim ated from the heights o f T -R F peaks in T -R F L P electropherogram s [36,38]. C h ro m ato g ram s w ith high-quality value (Q V > 7 5 ) w ere selected for furth er analyses. F ragm ents sm aller th a n 100 b p a n d larger th a n 1200 b p w ere considered noise a n d excluded from further analyses. E ac h T -R F was identified b y m atch in g to the in silico digestion lengths o f rbcL sequences from kleptoplasts (T able 2). T h e relative a b u n d an c e was calculated from relative peak heights using the form ula R A (%) = L1T.RF/F [ tot£li*100 (where R A is relative ab u n d an c e, F I t - r f is the p eak height o f a specific T -R F , a n d Hjotai is the total o f all T -R F p e ak heights in each chrom atogram ). T h e statistical significance o f the differences in rbcL a b u n d an c e b etw een seasonally collected sam ples was assessed w ith the p e rm u te d B ru n n er-M u n zel test [39] im plem en ted in the “ law stat” package for “ R ” [40], Am ino acid nitrogen isotopic analysis T o estim ate the trophic position o f the sea slugs u n d e r natu ral conditions a n d d u rin g starvation, w e used am ino acid nitrogen isotopic analysis [24,25]. T h e individuals o f P. ocellatus for the am ino acid n itrogen isotopic analysis w ere collected off T oguchi, O kinaw a, J a p a n (2 6 "2 T N 127"44'E). N o perm ission was req u ired for sam ple collection. A bout 50 individuals w ere collected o n 27 A pril 2010. F o r tran sp o rt to the lab o ra to ry in K an ag aw a, J a p a n , they w ere kept alive in artificial seaw ater (R hotom arine, R ei-Sea, T okyo, Ja p a n ) a t ro o m tem p e ra tu re for 3 days w ithout lighting. T h re e healthy individuals w ere ran d o m ly selected a n d dissected, a n d p a rap o d ial tissues w ere frozen a n d kept in liquid n itrogen as wild sam ples. T h e sam ples for starvation w ere collected o n 8 A pril 2008 (about 50 individuals) a n d in cu b ated in a n a q u ariu m filled w ith artificial seaw ater not c o ntaining m acroalgae a t 24"C u n d e r light (13 pinoi p hotons m -2 s- 1 ) w ith d a y -n ig h t (14-h lig h t/1 0 -h T a b l e 3 . N u m b e r of c lo n e s o b ta in e d from k le p to p la s t rbcL clo n e se q u e n c e s. C orresponding clades (in Figures 1 an d 2) o f clones A B C D Po-2005-A (Apr.) 1 - - Po-2005-B (May) 18 - 1 Po-2005-C (June) 7 5 Po-2005-D (Aug.) 10 3 Po-2005-E (Aug.) 82 Po-2005-F (Sept.) 11 T o tal E F G H - 7 - - 8 16 - 2 - - - 21 ID of th e individual (month of collection) Po-2005-G (Nov.) 13 Total num ber o f clones 142 ^B ^B ^B ^B ^B ^B ^B ^B ^B ^B 4 4 3 - - 7 - 4 1 - 8 - - 4 1 13 2 - 24 5 2 90 - - 15 5 10 6 9 20 19 - 24 209 Number of clones obtained in kleptoplast rbcL clone sequencing from each of 7 Plakobranchus ocellatus individuals. The source algae w ere identified from the phylogenetic analysis (Figure 1). doi:10.1371 /journal.pone.0042024.t003 PLoS ONE I w w w .p lo s o n e .o rg 4 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty ¡n Plakobranchus ocellatus ocellatus kleptoplast AB619285 ocellatus kleptoplast AB619270 ocellatus kleptoplast AB619263 ocellatus kleptoplast AB619302 ocellatus kleptoplast AB619278 ocellatus kleptoplast AB619265 - P ocellatus kleptoplast AB619287 . P. ocellatus kleptoplast AB619269 .P . ocellatus kleptoplast ABS19288 . P. ocellatus kleptoplast AB619289 . P ocellatus kleptoplast AB619305 . P. ocellatus kleptoplast AB619286 . P ocellatus kleptoplast AB619271 -P . ocellatus kleptoplast AB619274 . P. ocellatus kleptoplast AB619313 - P ocellatus kleptoplast ABS19280 - P ocellatus kleptoplast AB619294 _ P. ocellatus kleptoplast AB619268 Clade A ■P. ocellatus kleptoplast AB619277 . P. ocellatus kleptoplast AB619281 (P roposis spp.) , P oropsis sp. A B700349 1 P ocellatus kleptoplast AB619267 - P. ocellatus kleptoplast AB619284 . P ocellatus kleptoplast AB619311 - P . ocellatus kleptoplast AB619266 95/87 — P ocellatus kleptoplast AB619292 j - P ocellatus kleptoplast AB619276 NC/61 p - ocellatus kleptoplast AB619279 j - P ocellatus kleptoplast AB619300 9 é -P . ocellatus kleptoplast AB619308 NC/74 P ocellatus kleptoplast AB619297 97/99 r P ocellatus kleptoplast AB619282 97 )7 *— P. ocellatus kleptoplast AB619283 NC/87 P ocellatus kleptoplast AB619262 NC/63 100/88 P ocellatus kleptoplast AB619293 P. ocellatus kleptoplast AB619304 65/84 — P. ocellatus kleptoplast AB619306 L P. ocellatus kleptoplast AB619309 NC/66 R h ipidosiphon ja v e n s is F J432644 96/57p ocellatus kleptoplast AB619298 P ocellatus kleptoplast AB619301 C lade B 100/76 Rhipidosiphon lew m anom ontiae AB700351 (R hipidosiphon NC/73 P. ocellatus kleptoplast AB619290 100/73 lew m anom ontiae) j Rhipidosiphon lewm anom ontiae AB700350 98190^R hipidosiphon lew m anom ontiae HQ 871689 P. .P . P. .P . .P . .P . 0.6 I oí CD Q. CD 03 CD CO *2 O -O « CL Q3_ CD en ] 68 / 87/87 $0/100j— ch lo ro d e sm is fastigiata F J432639 C hlorodesm is fastigiata AB700352 94/81 Udotea conglutinata AY942168 Tí R hipocephalus phoenix AY942172 Penicillus capitatus FJ432641 Udotea unistratea HQ 8716 92 U dotea spinulosa AY942160 Penicillus p yriform is AY942162 MC ;/66 . 100/100 97/1001- Penicillus dum etosus AY 942175 - Udotea g la u ce scen s F J432650 in n /a á ll R hipidosiphon sp. AB700348 79/511 ocellatus kleptoplast AB619299 C lade C (R hipidosiphon spp.) 93 98T p - ocellatus kleptoplast A B 619307 30,301 " ocellatus kleptoplast AB619295 ] Udotea flabellum A Y 942166 F labellia pe tio la ta F J4 3 2 6 4 0 T ydem ania exp e dition is AY942161 rp 0.06 F ig u re 1. P h y lo g e n e tic tr e e b a s e d o n rb c L se q u e n c e s . M axim um likelih o o d (ML) p h y lo g e n y o f t h e class U lv o p h y c e a e b a s e d o n 1254 n u c le o tid e p o s itio n s o f th e c h lo ro p la s t-e n c o d e d rbcL g e n e . T h e p h y lo g ra m o f th e e n tire tre e o n th e u p p e r left Is c o lo re d to m a tc h th e Inset. C h la m y d o m o n a s re in h a rd tii (class C h lo ro p h y c e a e ) w a s c h o s e n a s th e o u tg r o u p . R ed, rbcL s e q u e n c e s fro m P. o cellatus. Black, algal rbcL s e q u e n c e s . B o o tstra p s u p p o r t (BS) v a lu e s > 5 0 % a re p ro v id e d a t th e n o d e s (n e lg h b o r-jo ln ln g /M L ). BS < 5 0 % ; "NC", n o n c o n s e n s u s n o d e th a t w a s n o t o b s e r v e d In th e n e ig h b o rjo in in g tre e . d o l:1 0 .1 3 7 1 /jo u rn a l.p o n e .0 0 4 2 0 2 4 .g 0 0 1 PLoS ONE I w w w .p lo s o n e .o rg 5 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty ¡n Plakobranchus ocellatus Pseudocodium sp. FJ607674 Pseudocodium sp. AM 909693 ......................................... 100/81 1— rPseudocodium devriesii AM 909689 100/100 100/100 í Pseudocodium okinawense AB301930 I Pseudocodium okinawense F J607675 100/100 Pseudocodium floridanum AM909692 76/92 Pseudocodium floridanum AY942178 90/98 Halim eda cryptica FJ624496 100/971 Halim eda pygm aea FJ624497 Halim eda m icronesica FJ624499 Halim eda fragilis FJ624498 98/59 Halim eda cylindracea FJ624510 100/95 ,H alimeda heterom orpha F J6 2 4 5 1 1 '53 Halim eda kanaloana FJ624512 76/Halim eda m acroloba F J624513 Halim eda m elanesica FJ624515 Halim eda borneensis F J624514 97/í - P. ocellatus kleptoplast AB619264 C lade D P. ocellatus kleptoplast AB619275 100/100 (.H alim eda Halim eda borneensis AB700353 98| 99 P. ocellatus kleptoplast AB619273 ] borneensis) — Halim eda m onile F J624516 100/98 00/1OQJ ¡H a lim e d a incrassata FJ715719 6317m. Halim eda incrassata AY942167 100/991- Halim eda sim ulans FJ624517 )0/100------ Halim eda lacrim osa FJ624495 i ------ Halim eda gracilis FJ624491 100/991— Halim eda m agnidisca F J624530 np i Halim eda discoidea AB038488 100/1 )0 „ Halim eda discoidea AB700354 NC/76 1.00/100 Halim eda lacunalis FJ624521 H; 5 7 71 /.’ Halim eda tuna FJ624524 I Halim eda copiosa FJ624508 inn/-i n n l i Halim eda opuntia AB700355 i n r v o i l - Halim eda opuntia AB038489 94/60 Halim eda m inim a FJ624504 — Siphonogram en abbreviata FJ432649 849 P. ocellatus kleptoplast AB619312 — 100/100 - P. ocellatus kleptoplast AB619296 C lade E P ocellatus kleptoplast AB619310 (H alim edineae P ocellatus kleptoplast AB619291 100/100 P ocellatus kleptoplast AB619314 ] spp.1) -C aulerpella am bigua F J432638 100/100 -4 0 0 /100 r P. ocellatus kleptoplast AB619258 C lade F L T I P. ocellatus kleptoplast AB619260 65/5 9 — p ocellatus kleptoplast AB619259 ] (C aulerpella 10 0 /1 0 0 1- Caulerpa okam urae A_B0_38_4_8_4 91/99 spp.) Caulerpa lentillifera AB054009 -C a u le rp a taxifolia AB054Û16 100/100 Caulerpa sertularioides AB054014 100/100 |- Caulerpa prolifera AY942173 — Caulerpa webbiana AB054017 Caulerpa brachypus AB038483 97/100 Caulerpa subserrata AB700356 Caulerpa serrulata AB700357 59/64 Caulerpa scalpelliform is AB054013 — Caulerpa racem osa AB038485 i Caulerpa racem osa A B 054011 0.06 58/1 ¡ÿ- Caulerpa racem osa AB700358 -C a u le rp a num m ularia AB054010 1—Rhipiliopsis profunda FJ432647 C lade G 90/87 P. ocellatus kleptoplast AB619261 (R hipiliaceae spp, P ocellatus kleptoplast AB619257 100/100 E I 0.06 NC/68 I CD >5 o 3 CD Q. 3 ’ CD Q) CD "O ÇP CL M CD CP Í¿ 90/98 f ] 10C 100 P. oce//afus_kleptoplast AB619256 ----------- Pseudochlorodesm is sp. FJ432643 NC/61 100/100 i— Rhipilia nigrescens FJ432646 72/97 — Rhipilia tomentosa AY942164 R hipilia crassa FJ43JÄ45 100/100 jp . ocellatus kleptoplast A B619272 j c i a d e H (H alim edineae spp 51/■2 ) 100/100 ‘P ocellatus kleptoplast AB619303 ■ — Pseudochlorodesm is furcellata FJ432642 ■Dichotom osiphon tuberosus A B038487 100/100 ■Pedobesia ryukyuensis AB038482 3/66 100/100 , — Codium lucasii AB038481 Codium fragile M67453 100/100 62/58 ■Bryopsis plum osa AB038480 Bryopsis hypnoides AY942169 O streobium quekettii FJ715720 Chlorocladus australasicus AY177750 100/100 98/99 ------------ Bornetella sphaerica FJ535850 D asycladales Acetabularia acetabulum FJ715714 — Chlam ydom onas reinhardtii NC 005353 88/81 100/100 F ig u re 2. P h y lo g e n e tic t r e e b a s e d o n rbcL s e q u e n c e s (c o n tin u e d ). doi:10.1371/journal.pone.0042024.g002 PLoS ONE I w w w .p lo s o n e .o rg J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus Rhilidosiphon lewamanomontii Relative fluorescence units fRFU) 100 6000- 150 Flagment length (bp) 200 250 300 350 400 350 400 350 400 500040003000 2000 1000 00 331 bp Rhle(B) Halimeda borneensis Relative fluorescence units {RFU) „100 1500]— 1400 150 200 250 300 1200 1000 800 600 400 200 Relative fluorescence units (RFU) Q 305bp Prsp/Habo(A/D) Plakobranchus ocellatus 1500 1400 100 150 200 250 300 1200 1000 800 600 400 200 137bp Hasp1/Rhsp(E/G) 291bp Casp(F) 190bp Casp(F) 331 bp Rhle(B) 365bp RhspiC) 305bp Prsp/Habo(A/D) PLoS ONE I w w w .p lo s o n e .o rg 7 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus F ig u re 3. E le c tro p h e ro g ra m s o f T-RFLP a n a ly sis. T-RFLP e le c tr o p h e r o g ra m s fro m (A) Rhipidosiphon lewmanomontiae, (B) Halimeda borneensis, a n d (C) a s in g le in d iv id u al o f Plakobranchus ocellatus (s a m p le n o . P lo c 0 5 1 1 13A). F ra g m e n t le n g th s a n d c o rre s p o n d in g s o u rc e a lg a e a re s h o w n in th e b o x u n d e r th e p e a k . O nly a s in g le p e a k w ith a le n g th id e n tic al to th a t p re d ic te d b y in silico T-RFLP w a s o b ta in e d fro m e a c h alg al in dividual (T able 2). T h e e le c tr o p h e r o g ra m fro m th e s e a slu g (C) s h o w e d m u ltip le p e a k s c o rre s p o n d in g to th o s e o f in silico T-RFLP o f th e k le p to p la s t s o u rc e a lg a e (Table 2). d o i:1 0 .1 3 7 1 /jo u rn a l.p o n e .0 0 4 2 0 2 4 .g 0 0 3 single T -R F p e ak in each algal species, a n d its T -R F length was identical w ith th a t p red icted in silico (H . borneensis = 306 b p a n d R. lewmanomontiae = 331 bp) (Table 2, Figure 3A, B). H igh-quality T -R F L P electropherogram s (quality value > 7 5 ) w ere obtain ed from 30 individuals o f P. ocellatus collected in 2005 a n d from 20 collected in 2007 (Figure 4A). O n e to five peaks w ere found in each P. ocellatus individual (Figures 3C a n d 4A, T ab le SI). E xcept for the peak corresponding to H alim edineae spp. 2 (clade H) (260 bp), all p redicted restriction profiles w ere recovered. Forty-four o u t o f 50 individuals o f P. ocellatus show ed m ultiple T -R F peaks (28 individuals in 2005 a n d 16 in 2007) (Figure 4A, T ab le SI). A ssum ing th a t the genom e copy n u m b e r in the chloroplasts did n o t change before a n d after sequestration, the relative a b u n d an c e o f rbcLs was used to estim ate th a t o f the corresponding kleptoplasts. As show n b y the boxplots in Figure 4B, the relative a b u n d an c e o f kleptoplasts show ed m ark ed seasonal changes. Som e o f the observed changes o c cu rre d over a relatively short tim e-span. F or exam ple, in 2005, the a b u n d an c e o f H a s p l/R is p (clade E /G ) in A ugust was significandy h igher th a n th a t in J u n e (p-value = 0.025) (Figure 4B). Sim ilarly, in 2007, the percentage o f Caulerpella spp. (clade F) significantly increased from J u ly to A ugust (pvalue = 0.010), while th a t o f R . lewmanomontiae (clade B) signifi­ cantly decreased in the sam e p erio d (p-value = 0.020) (Figure 4B). In 2005, clear changes in a b u n d an c e w ere also observed for Rhipidosiphon spp. (clade C), R . lewmanomontiae (clade B), a n d H a s p l/R is p (clade E /G ) b u t these w ere n o t significant in the p e rm u te d B ru n n er-M u n zel test (p-value = 0.097, 0.571, a n d 0.102, respectively) (Figure 4B). (off T oguchi, O kinaw a) o n 27 A pril 2010 a n d its S 15N was analyzed as described above. Results Identification o f P. ocellatus kleptoplasts T o confirm the genetic hom ogeneity o f P. ocellatus collected a n d identify the source algae o f kleptoplasts, we sequenced th eir m tl6 S rD N A a n d rbcL. T h e sequences o f m tl6 S rD N A fragm ents [443 bp: D N A D a ta B ank o f J a p a n (DDBJ) accession nu m b er, AB700359] w ere identical am o n g all exam ined P. ocellatus individuals collected off T en ija, O kinaw a, J a p a n , suggesting th a t all sam ples belonged to the sam e species. By clone sequencing, we o b tain e d 209 rbcL sequences o f kleptoplasts from 7 individuals o f P. ocellatus collected in 2005 (T able 3). A fter unifying highly sim ilar sequences (¡6-dista n c e< 0 .0 0 1 ), 59 sequences w ere used for subsequent analyses (DD BJ accession num bers, A B 619256-A B 619314). B lastn analyses show ed th a t the kleptoplast rbcL sequences w ere the m ost sim ilar to those from green algae belonging to the suborder H alim edineae (order Bryopsidales). In the phylogenetic tree (Figures 1 a n d 2), the kleptoplast sequences did n o t form a m onophyletic clade b u t w ere divided into eight clades w ithin the H alim edineae (clades A - H in Figures 1 a n d 2). C lade B sequence A B 619290 was identical to R . lewmanomontiae from T en ija (AB700351). C lade D co rresp o n d ed to reference sequences o f H . borneensis (FJ624514 a n d A B700353). T h e rem ain in g 6 clades o f kleptoplasts (A, C, E, F, G , H) could n o t be identified a t the species level a n d w ere assigned to h igher taxa. C lade A clustered w ith Poropsis sp., clade C w ith Rhipidosiphon sp., clade F w ith the genus Caulerpella, a n d clade G w ith the fam ily R hipiliaceae. Fam ilial relationships w ere un clear for clades E a n d H , b u t they b o th belong to the h igher tax o n H alim edineae. F or convenience, the source algae w ith such im perfect identifications are indicated w ith a h igher tax o n nam e+ spp. (e.g., R hipiliaceae spp.). Based o n the rbcL sequences cloned from the 7 individuals, it was already clear th a t individual sea slugs c o n ta in ed kleptoplasts from m ultiple source species. As show n in T ab le 3, no single individual h a d only one type o f kleptoplast. In m ost cases, kleptoplasts from 3 o r 4 algal species w ere p re sen t in P. ocellatus individuals. Trophic position o f P. ocellatus T o estim ate the tro p h ic position o f P. ocellatus, the S15N values o f glutam ic acid (S15N g iu) a n d phenylalanine (S15Nphe) o f the freshly collected a n d starved sam ples o f P. ocellatus w ere m easured, a n d TPoiu/phe values w ere calculated. T h e m ean TPoiu/phe value o f 3 freshly collected P. ocellatus individuals was 1 .9 ± 0 .1 (m ean ± “ l a for the T P values,” n = 3) (T able 4). O n the o th er h and, the m ean TPoiu/phe values o f P. ocellatus th a t h a d b e en starved u n d e r light for ab o u t 5 m onths (156 days) was 1 .3 ± 0 .1 (n = 3) (T able 4). T h e TPoiu/phe value o f R . lewmanomontiae, w hich was a source alga o f kleptoplasts in P. ocellatus, was 1.0 (n= 1). T h e m ea n T P o w p h e value o f T. crocea a d d u cto r m uscle was 2 .0 ± 0 .1 (n = 3), a n d th a t o f zooxanthellae isolated from T. crocea m a n d e was 0 .9 ± 0 .0 (n = 3). Seasonality o f P. ocellatus kleptoplasts T o exam ine w h eth er the com position o f kleptoplasts changed over tim e, T -R F L P analysis o f rbcL w ith T a il digestion was perform ed. H alim ed in eae spp. 1 (clade E) a n d R hipiliaceae spp. (clade G) could n o t b e distinguished in this analysis because their pred icted T -R F lengths w ere identical a t 138 b p (T able 2). T h ey are h ereafter referred to as “ H a s p l/R is p (clade E /G ).” T h e T -R F o f Poropsis spp. (clade A) could n o t be differentiated from th a t o f H . borneensis (clade D) (T -R F length = 306 bp, T ab le 2), a n d th ey are referred to as “ P rs p /H a b o (clade A /D ).” T h e heights o f those T R F peaks w ere re g ard e d as the sum o f the respective two algal source clades (T able 2). T o establish the applicability o f in silico T -R F predictions in actual T -R F L P analysis, we c o m p a red the p red icted T -R F fragm ent lengths w ith those o f PC R -am plified rbcL fragm ents from two algae, H . borneensis a n d R . lewmanomontiae. W e o b tain e d a PLoS ONE I w w w .p lo s o n e .o rg D iscussion By com bining different m ethods, o u r results offer several new insights into the ecology o f functional kleptoplasty in P. ocellatus. Because u n in cu b a ted w ild individuals w ere studied, the results shed light o n the n a tu ra l state o f this sea slug species. M ultiple algal sources o f kleptoplasts in P. ocellatus T h e phylogenetic analyses o f the chloroplast-encoded rbcL gene identified a t least 8 algal sources o f kleptoplasts in P. ocellatus (Figure 1). T h is n u m b e r exceeds the estim ates from previous lab o ra to ry feeding experim ents o n P. ocellatus [18,20] O u r d a ta dem onstrate th a t P. ocellatus has one o f the b ro a d est food algal spectra in the Sacoglossa, including a t least 8 species in 5 different algal g enera [7]. T h e m ultiplicity o f kleptoplasts in individual sea 8 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus 2005 100 2007 TUI 8 75 C CS ■O § 50 -Q co III I R hsp (Clade C) Rhle (Clade B) I H asp2(C lade H) Prsp/H abo (Clade AID) I C a sp (Clade F) CD _co a) a: H asp1/R hsp (Clade E/G) 1 â 25 o 10, 28, 23, Apr. Apr. May 21, Jun. 3, July 7, Aug. 16, 13, S e p t Nov. 17, May 15, July 15, Sept. S am pling date B 2005 2007 100 Rhsp Maximum ‘ U pper quartlle 50 “ ^ r M e d ia n ~ ■ ♦ y Lower quartlle 0 100 ♦ Minimum J=a. * L .................................. e ............ Rhle j-1 50 _ - ù I) (1) o 100 != CD ■o ..... £ ------- ! * p<0.05 .........* .........................................................1 ................................... l Prsp/H abo cz 3 23 cu (I) > 50 CD 0 (1) o : 100 L i K l ö * p<0,05 1 1 ___________________ r1 _- - 1 J .................................. A .......... 1 H a s p l/R is p 50 ’ p<ö.05 1 0 ♦ ♦ n 100 F L. Casp 50 1 ♦ + l 1 ..... 4 ____ _.........□ ....—................ .♦.............. . 1 0 ,2 8 , 23, 21, 3, 7, Apr Apr. May Jun. July Aug. 16, 13, 17, 15, 15, 15, S ept Nov. May July Aug. Sept. Sam pling date F ig u re 4. T im e s e rie s o f rbcL s e q u e n c e c o m p o s itio n in Plakobranchus ocellatus. (A) R elative a b u n d a n c e o f re s p e c tiv e rbcL in in d iv id u a ls o f Plakobranchus ocellatus c o lle c te d m o n th ly in 2 0 0 5 a n d 2 0 0 7 . S o u rc e a lg a e o f k le p to p la s ts a re s h o w n b y a b b re v ia tio n s o f th e c la d e s (T able 2). (B) T u k ey 's b o x p lo ts o f t h e re la tiv e a b u n d a n c e o f rbcL s e q u e n c e s . D ata p o in ts o f fe w e r th a n th re e in d iv id u á is o f P. ocellatus a re s h o w n a s d ia m o n d s . T he PLoS ONE I w w w .p lo s o n e .o rg 9 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus brackets with indicate a significant difference of the percentage value in the perm uted Brunner-Munzel test. The value beside the symbol indicates p-value. doi:10.1371/journal.pone.0042024.g004 slug specim ens also confirm s th a t individuals have m ultiple food sources. T his m ultiplicity o f kleptoplasts was first re p o rte d in a sacoglossan, Elysia clarki (2 -4 species) [9], a n d also recently suggested in P. ocellatus [17]. T hese findings strongly suggest that, in the n a tu ra l setting, the sea slugs feed o n several species a n d re ta in th eir chloroplasts in digestive gland cells. A com m on conclusion o f our w ork a n d previous feeding studies on P. ocellatus [7,18,20] is that their food/source algae are all siphonous green algae o f the order Bryopsidales. T h e genus Caulerpella, w hich was identified as a food source in a previous study [20], was shown to be a m ajor contributor to the kleptoplast pool. O n the other hand, we did not detect 3 algal species that w ere eaten by P. ocellatus in a laboratory setting in previous studies: C. hildebrandtii (Udoteaceae); Bryopsis sp.; a n d R . javensis [18,20], Such discordance m ay be because the algae in question are not preferred by P. ocellatus in their natural habitats, or because the algae are ingested b u t their chloroplasts are not retained. F or some o f the algal species involved, misidentifications could also lead to the m ism atch. For exam ple, Rhipidosiphon is a genus o f dim inutive, fan-shaped algae in w hich there are several m orphologically similar but genetically distinct species (Verbruggen, unpublished results), a n d kleptoplast clade C m ay originate from algae th at closely resem ble R . javensis. Similarly, it is possible that in the previous studies the source algae belonging to clade A (genus Poropsis) could have been m isidentified as C. hildebrandtii. Because these taxa are anatom ically very similar', a n d because the genus Poropsis is little know n a n d not com m only included in taxonom ic reference works, it m ay have b een regarded as C. hildebrandtii in previous studies. O u r kleptoplast survey also revealed several new food algae o f P. ocellatus. A m ong th em are R . lewmanomontiae (clade B), PI. borneensis (clade D), R hipiliaceae spp. (clade G), a n d potentially Rhipidosiphon spp. (clade B). In ad dition to these taxa, we found kleptoplasts o f two lineages th a t could n o t be readily assigned to a family (Flaliniedineae spp. 1 a n d spp. 2). T h e m ost closely related rbcL sequences o f these two clades are Pseudochlorodesmis species (Figure 1). T h e dim inutive siphon o f Pseudochlorodesmis, if b ra n ch e d a t all, does so only a few tim es [43]. Because the algae rarely exceed a few m illim eters in length, it should not com e as a surprise th a t they m ay have b een overlooked in previous studies. T h e observed ulvophyceaen m acroalgae in sam pling sites are listed in T ab le S3. A n interesting observation is th a t P. ocellatus do not seem to discrim inate am o n g food sources based on size. A m ong the sources o f kleptoplasts are some larg er seaweeds such as PI. borneensis (10 cm) a n d R . lewmanomontiae (3 cm) as well as several m illim eter-scale taxa (.Pseudochlorodesmis, Caulerpella). O n e com m onality betw een these algae is th a t they all belong to suborder Flaliniedineae o f the ord er Bryopsidales (Figure 1) [44], w hich is consistent w ith the hypothesis on the relationships betw een the ra d u la r tooth shape a n d food algal cell wall com ponents [45]. T h e ra d u la r to o th o f P. ocellatus has a triangular shape suitable for p u n c tu rin g a hole in the halim edineaen cell wall, w hich is com posed o f xylan [45,46], after w hich the cytoplasm can b e ingested. Changing annual kleptoplast com position T -R F L P analysis show ed th a t the kleptoplast rbcL com position o f the sea slugs ch an g ed considerably from m o n th to m onth. Because kleptoplasts have n o t b e en observed to divide [2,17], these changes m ust result from the replacem ent o f kleptoplasts w ith newly obtain ed chloroplasts by feeding, different spans o f longevity am o n g kleptoplasts derived from various source algae, a n d /o r differential kleptoplast D N A replication (m ultim erization) rates [47,48] due to those source algae. D ifferent spans o f longevity a n d change in chloroplast genom e m ultim erizations o f the kleptoplasts w ould leave a specific im print on the kleptoplast com position over tim e, i.e., the recovered kleptoplast com position w ould rem ain the sam e b u t th eir relative ab u n d an c e should in cre ase/d e cre ase gradually over tim e. O u r results do not suggest such a p a tte rn b u t ra th e r suggest th a t large, ap p aren tly stochastic changes occur in kleptoplast com position. A lthough we can n o t entirely exclude the possibility th a t P. ocellatus individuals im m igrated into the pop u latio n at the collection sites, previous studies suggested th a t P. ocellatus b re ed in a restricted season in spring a n d rarely m igrate as adults [18,49], T herefore, the hypothesis th a t kleptoplasts are replaced w ith newly obtain ed chloroplasts from ingested algae appears to b e the m ost plausible e x planation for o u r results. A lthough the seasonal change in the Table 4. S15N values of amino acids and estim ated trophic positions of Plakobranchus ocellatus, th e alga Rhipidosiphon lew m anom ontiae, and the giant clam Tridacna crocea. Specim en N um ber o f specim ens A veraged §1SN v a lu e § (SD) G lu ta m ic acid P h enylalan ine T rop hic po sitio n # Plakobranchus ocellatus Freshly collected* (Apr. 2010) 3 17.4 (0.9) 7.3 (1.3) 1.9 (0.08) Starved* (Apr.-Nov. 2008) 3 20.0 (0.5) 14.4 (0.9) 1.3 (0.07) 1 12.3 8.8 1.0 Rhipidosiphon lewmanomontiae (Apr. 2010) Tridacna crocea (Nov. 2011) Adductor muscle 3 16.1 (0.6) 5.5 (0.1) 2.0 (0.07) Zooxanthellae* 3 8.2 (0.4) 5.3 (0.1) 0.9 (0.04) ^Collected off Toguchi, Okinawa, Japan. ^Starved for 156 days (5 months) in a laboratory aquarium after collection off Toguchi. 5Symbiodinium spp. isolated from th e mantle of T. crocea. §% o, relative to air. # Trophic position (TPG,U/Phe) = (815NG,u- 8 15Nphe-3.4)/7.6+1. doi:10.1371 /journal.pone.0042024.t004 PLoS ONE I w w w .p lo s o n e .o rg 10 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus algal co m m unity m ay affect the kleptoplast com positions in P. ocellatus, this p o in t rem ains to be studied in future. synthetic activity lost is necessary to sustain the re q u ire d level o f photosynthetic activity. A lthough P. ocellatus is capable o f retain in g kleptoplasts for up to 10 m onths, o u r results indicate th a t the nu tritio n al con trib u tio n o f kleptoplasts m ay b e insufficient even in a n a tu ra l h a b ita t w here food algae are plentiful. In o th er sacoglossan species such as Elysia timida, E . viridis, a n d Thuridilla carlsoni, the n utritional c o ntribution o f functional kleptoplasts m ay be even less, because the photosynthetic activity o f th eir kleptoplasts is less a n d re tention periods are shorter th a n in P. ocellatus [10]. T h e ecological role o f kleptoplasts u n d e r n a tu ra l conditions w h en food is a b u n d a n t rem ains unclear. F unctional kleptoplasty m ay reduce the algal feeding a n d the energy cost to ingest th eir calcified thallus [6]. O u r p re sen t study show ed th a t the nu tritio n al yield from kleptoplasts does n o t exceed th a t from food digestion b u t suggested th a t they provide a n energy source (e.g., sugars) a n d essential nutrients (e.g., am ino acids) u n d e r starved conditions. T h e T P Giu/phe value o f 1.3 d u rin g starvation suggests th a t the con trib u tio n o f kleptoplasts to am ino acid synthesis is m u ch greater th a n th a t o f autophagic digestion o f reserved am ino acids a n d proteins, w hich w ould increase the T P Giu/phe value. It has b e en p ro p o sed th a t the function o f kleptoplasts m ay be to co m p lem en t nutrients u n d e r starved conditions [6]. O u r p re sen t results sup p o rt this hypothesis. A lthough a d u lt P. ocellatus are th o u g h t to be n ourished b y the photosynthetic activity o f functional kleptoplasty, the p re sen t study suggests th a t the sea slug continually feeds o n siphonous green m acroalgae in its n a tu ra l h a b ita t a n d th a t digested algae are the m ajo r source o f n u trition, while kleptoplast photosynthesis plays a very m in o r role. F u rth e r studies on the feeding behavior, photosynthetic activity, a n d nu tritio n al con trib u tio n o f kleptoplasts in P. ocellatus are necessary to u n d e rstan d the ecological role o f the functional kleptoplasty o f this species. Trophic position o f P. ocellatus A ssum ing a n e rro r in the T P Giu/phe value (i.e., l a = 0.12) [24], the values o f w ild P. ocellatus (m ean TPoiu/phe value = 1.9) w ere identical to the trophic position o f algivorous organism s, i.e., p rim a ry consum ers (T able 4, S2). T hese results clearly indicate that, u n d e r n a tu ra l circum stances, P. ocellatus individuals m ainly o b tain am ino acids by digestion o f ingested algae. T his is in stark co n trast to P. ocellatus individuals th a t h a d b e en starved for 5 m onths a n d h a d a T P o w p h e value o f 1.3, w hich is interm ediate betw een values typical o f p h o to tro p h ic organism s (prim ary producers) a n d algivores (prim ary consum ers). T hese results suggest th a t kleptoplasts o f P. ocellatus could pro d u ce am ino acids, for w hich the T P Glu/Phe value w ould be 1.0, sim ilar to th a t o f p rim a ry producers. T h e p ro d u c tio n o f am ino acids from inorganic n itrogen was also re p o rte d in kleptoplasts o f E . viridis in a trac er ex p erim en t using 15N -inorganic n itrogen [14], T eugels a n d cow orkers have p ro p o sed th a t kleptoplasts synthesize glutam ic acid from am m o n iu m derived from seaw ater or m ade from nitrate a n d /o r urea, a n d th a t o th er am ino acids are synthesized from glutam ic acid [14], It is n o t clear w h eth er the enzym es o f these pathw ays re m a in active in the kleptoplasts [17] o r w h eth er th eir genes are expressed in the host anim al nucleus to w hich they w ere transferred from the algal nu clear genom e [50]. W h en the a m o u n t o f am ino acids from the digestion o f algae is m u ch larg er th a n th a t from kleptoplasts, the T P Giu/phe value w ould becom e 2.0. A ccordingly, the observed T P Giu/phe values (i.e., 1.3 ± 0 .1 ) for c ultured individuals im ply som e significant con trib u tio n o f the kleptoplast-produced am ino acids to P. ocellatus d u rin g starvation. T h e g iant clam T. crocea harb o rs zooxanthellae, w hich con trib u te significandy to the host n u trition, b u t it also feeds on free-living plankters [51]. Previous studies show ed th a t the zooxanthellae secrete a p hotosynthate, glycerol o r glucose, in the m antle tissue [42,52,53] b u t the zooxanthellae are also digested in the stom ach [54,55]. T hose previous results suggested th a t essential am ino acids are derived from the digestion o f zoo x an ­ thellae a n d plankters. T h e T P Giu/phe value o f the g iant clam T. crocea was 2.0, w hich is in ag ree m e n t w ith previous results [54,55] show ing th a t T. crocea gain am ino acids by the digestion o f zooxanthellae in sym biotic relationships as well as the digestion o f free-living plankters. T h e d a ta together w ith those o f n a tu ra l a n d starved individuals suggest th a t w ild P. ocellatus o b tain am ino acids m ainly from hetero tro p h ic digestion o f algae as in the case o f T. crocea, w hile starved individuals obtain significant am o u n ts o f am ino acids from photosynthetic p ro d u c tio n in kleptoplasts. Supporting Information Figure SI O v e r v ie w s o f P lan kobranchu s o cella tu s. (A) D orsal views o f a freshly collected intact P. ocellatus individual. (B) A n anesthetized individual w ith spread p a rap o d ia. T h e tissue region in the re d square was dissected a n d used for D N A extraction. (TIF) T able SI P e r c e n ta g e a b u n d a n ce o f rbcL s e q u e n c e s fr o m s o u r c e a lg a e in P. ocellatus*. (XLS) T able S2 (XLS) T able S3 (XLS) Feeding o f P. ocellatus under natural conditions A ck n ow led gm en ts T h e p re sen t results indicate th a t P. ocellatus gain kleptoplasts from m ultiple algal species, th a t each individual harb o rs a heterogeneous p o p u latio n o f kleptoplasts from m ultiple algal species, th a t the kleptoplast com position changes w ith tim e, a n d th a t the sea slugs m ainly gain am ino acids by digesting ingested algae in natu re, although kleptoplasts are p ro b ab ly capable o f p ro d u c in g am ino acids. T hese com b in ed findings suggest th a t wild P. ocellatus repeatedly feed o n siphonous green algae a n d acquire new kleptoplasts w h en th ere is sufficient algal biom ass to feed the P. ocellatus p opulation. T h e ecological role o f functional klepto­ plasty has b e en hypothesized to be a n u tritio n resource du rin g periods o f food insecurity [6,15]. T h e photosynthetic activity o f kleptoplasts in starved P. ocellatus is red u ced by a b o u t 10% p e r m o n th [10]. R eplenishing kleptoplasts equivalent to the p h o to ­ PLoS ONE I w w w .p lo s o n e .o rg W e thank Ms. Rie N akano, Dr. T ohru Iseto, Dr. Seiji Takegata, an d all staff in E. H irose’s laboratory for their support in the field; D r. T o m Schils for providing some o f the algal specimens; Dr. N aohiko O hkouchi and Ms. Yoko Sasaki for their advice an d help on the nitrogen isotopic study; and Dr. D hugal Lindsay for his advice on writing the manuscript. Author C ontributions Conceived and designed the experiments: E H T. M aruyam a. Perform ed the experiments: T . M aeda M K K T H V TY SS Y T YC M T . Analyzed the data: T. M aeda E H YC K T TY H V Y T M T T. M aruyam a. C ontributed reagents/m aterials/analysis tools: T . M aeda E H H V K I J T YC K T TY Y T. W rote the paper: T . M aeda E H YC K T TY H V Y T M T T. M aruyam a. 11 J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4 K le p to p la s ty in Plakobranchus ocellatus R eferences 1. K a w a g u ti S, Y a m a su T (1965) E le c tro n m ic ro sc o p y o n th e sym biosis b e tw e e n a n elysioid g a s tro p o d a n d c h lo ro p la s ts o f a g re e n alga. B i o l J O k a y a m a U n iv 11: 5 7 -6 5 . 2. R u m p h o M , D a s to o r F , M a n h a r t J , L e e J (2007) T h e k le p to p la st. In : W ise R , H o o b e r J K , e d ito rs. T h e s tr u c tu r e a n d fu n c tio n o f p lastid s. N e th e rla n d s: S p rin g e r, p p . 4 5 1 -4 7 3 . 3. W a u g h G R , C la rk K B (1986) S e a s o n a l a n d g e o g ra p h ic v a ria tio n in c h lo ro p h y ll lev el o f Elysia tuca {Ascoglossa, O p is th o b ra n c h ia ). M a r B iol 92: 4 8 3 —487. 4. T r e n c h R , G re e n e R , B y stro m B (1969) C h lo ro p la s ts as f u n c tio n a l o rg an e lle s in a n im a l tissues. J C e ll B iol 42: 404—417. 5. C u r d s N E , P ie rc e S K , M a sse y S E , S c h w a rtz J A , M a u g e i T K (2007) N ew ly m e ta m o r p h o s e d Elysia clarki ju v e n ile s fe e d o n a n d s e q u e ste r c h lo ro p lasts fro m a lg a l species d iffe re n t fro m th o se u tilized b y a d u lt slugs. M a r B iol 150: 7 9 7 —80 6 . 6. W illia m s SI, W a lk e r D I (1999) M e so h e rb iv o re -m a c ro a lg a l in te ra c d o n s : F e e d in g eco lo g y o f sa co g lo ssan sea slugs {M ollusca, O p is th o b ra n c h ia ) a n d th e ir effects o n th e ir f o o d alg a e . M a r B iol A n n u R e v 37: 8 7 - 1 2 8 . 7. H ä n d e le r K , W ä g e le H {2007) P re lim in a ry stu d y o n m o le c u la r p h y lo g e n y o f S acoglossa a n d a c o m p ila tio n o f th e ir fo o d o rg an ism s. B o n n Z o o l B e itr 55: 2 31— 254. 8. H ä n d e le r K , W ä g e le H , W a h r m u n d U T E , R ü d in g e r M , K n o o p V {2010) Slu g s’ la s t m eals: m o le c u la r id e n d fic a tio n o f s e q u e s te re d c h lo ro p lasts f ro m d iffe re n t a lg a l o rig in s in S aco g lo ssa { O p is th o b ra n c h ia , G a s tro p o d a ). M o l E v o l R e so u rc e s 28. 10: 9 6 8 - 9 7 8 . C u r d s N E , M a sse y S E , P ie rc e S K {2006) T h e s y m b io d c c h lo ro p lasts in th e sa co g lo ssan Elysia clarki a re fro m se v era l a lg a l species. I n v e r te b r B iol 125: 3 36— 345. E v e r ts e n J , B u r g h a rd t I, J o h n s e n G , W ä g e le H {2007) R e te n d o n o f f u n c tio n a l 36. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. c h lo ro p la s ts in M a r B iol 151: H ä n d e le r K , c h lo ro p lasts in 29. 30. 31. 32. 33. 34. 35. 37. so m e saco g lo ssan s f ro m th e In d o -P a c ific a n d M e d ite rr a n e a n . 2 1 5 9 -2 1 6 6 . G rz y m b o w s k i Y P , K r u g I J , W a g e le H {2009) F u n c tio n a l m e ta z o a n cells— a u n iq u e e v o lu tio n a ry s tra te g y in a n im a l life. 38. F r o n t Z o o l 6: 28. G re e n e R , M u s c a tin e L {1972) Sy m b io sis in sa co g lo ssan o p isth o b ra n c h s : p h o to s y n th e tic p r o d u c ts o f a n im a l-c h lo ro p la s t a sso ciatio n s. M a r B iol 14: 2 53— 259. T r e n c h R , T r e n c h M , M u s c a tin e L {1972) S y m b io tic c h lo ro p lasts: th e ir p h o to s y n th e tic p r o d u c ts a n d c o n tr ib u tio n to m u c u s sy n th esis in tw o m a rin e slugs. B iol B ull 142: 3 3 5 -3 4 9 . T e u g e ls B, B o u illo n S, V e u g e r B, M id d e lb u rg J J , K o e d a m N {2008) K le p to p la sts m e d ia te n itro g e n a c q u is itio n in th e se a slug Elysia viridis. A q u a tic B iol 4: 15—21. C la rk K B , J e n s e n K R , S tirts H M {1990) S u rv e y fo r f u n c tio n a l k lep to p lasty a m o n g W e st A d a n tic A sco g lo ssa {— Sacoglossa) {M ollusca, O p is th o b ra n c h ia ). V e lig e r 33: 3 3 9 -3 4 5 . C la rk K B {1992) P la n t-lik e a n im a ls a n d a n im a l-lik e p la n ts: sy m b io tic c o e v o lu tio n o f a sco g lo ssan {= saco g lo ssan ) m o llu scs, th e ir a lg a l p re y , a n d a lg a l p lastid s. In: R e isse r W , e d ito r. A lg a e a n d sy m b io ses: p la n ts , a n im a ls , fu n g i, v iru se s, in te ra c tio n s e x p lo re d . B ristol, U .K .: B io p ress L td . p p . 5 1 5 —530. W ä g e le H , D e u s c h O , H ä n d e le r K , M a rtin R , S c h m itt V , e t al. {2011) T r a n s c r ip to m ic e v id e n c e t h a t lo n g ev ity o f a c q u ir e d p la stid s in th e p h o to sy n th e tic slugs Elysia timida a n d Plakobranchus ocellatus d o es n o t e n ta il l a te ra l tra n s fe r o f alg al n u c le a r genes. M o l B iol E v o l 28: 6 9 9 - 7 0 6 . A d a c h i A {1991) M o rp h o lo g ic a l stu d y o n sa co g lo ssan o p is th o b r a n c h Plakobran­ chus spp. M a s te r ’s thesis, U n iv e rsity o f th e R y u k y u s, N is h ih a ra , O k in a w a . [In Jap an ese] J e n s e n K R {1992) A n a to m y o f so m e In d o -P a c ific E ly siid a e { O p is th o b ra n c h ia , S acoglossa { = A scoglossa)), w ith a d isc u ssio n o f th e g e n e tic d iv isio n a n d p h y lo g e n y . J M o llu sc S tu d ies 58: 2 5 7 -2 9 6 . D u n la p M S {1975) Sy m b io sis b e tw e e n a lg a l c h lo ro p lasts a n d th e m o llu sc Plakobranchus ocellatus v a n H a s s e k {Sacoglossa: O p is th o b ra n c h ia ). P h D thesis, U n iv e rsity o f H a w a ii. G re e n e R W {1970) S y m b io sis in sa co g lo ssan o p isth o b ra n c h s : fu n c tio n a l c a p a c ity o f s y m b io tic c h lo ro p lasts. M a r B iol 7: 138—142 Lew is L A , M c C o u r t R M {2004) G r e e n a lg a e a n d th e o rig in o f l a n d p lan ts. A m J B o t 91: 1535. G re e n B R {2011) C h lo ro p la s t g e n o m e s o f p h o to s y n th e tic eu k a ry o te s. P la n t J 66: 3 4 -4 4 . C h ik a ra is h i Y , O g a w a N O , K a s h iy a m a Y , T a k a n o Y , S u g a H , e t al. {2009) D e te rm in a tio n o f a q u a tic fo o d -w e b s tru c tu re b a s e d o n c o m p o u n d -sp e c ific n itro g e n iso to p ic c o m p o s itio n o f a m in o a cid s. L im n o l O c e a n o g r M e th o d s 7: 7 4 0 -7 5 0 . C h ik a ra is h i Y , K a s h iy a m a l Y , O g a w a N O , K ita z a to H , O h k o u c h i N {2007) M e ta b o lic c o n tro l o f n itro g e n iso to p e c o m p o s itio n o f a m in o a c id s in m a c ro a lg a e a n d g astro p o d s: im p lic a tio n s fo r a q u a tic fo o d w e b stu d ies. M a r E c o l P r o g Ser 342: 8 5 -9 0 . H iro se E {2005) D ig e stiv e sy stem o f th e sa co g lo ssan Plakobranchus ocellatus { G a stro p o d a : O p is th o b ra n c h ia ): L ig h t- a n d e le c tro n -m ic ro s c o p ic o b se rv a tio n s w ith r e m a rk s o n c h lo ro p la s t re te n tio n . Z o o l Sei 22: 9 0 5 —916. T r o w b r id g e C D , H ir a n o Y M , H ir a n o Y J {2011) In v e n to r y o f J a p a n e s e sa co g lo ssan o p isth o b ra n c h s : H is to ric a l rev iew , c u r r e n t re c o rd s, a n d u n re so lv e d 39. 40. 41. 42. a n aly ses w ith th o u sa n d s o f ta x a a n d m ix e d m o d els. B io in fo rm a tic s 22: 2 6 8 8 — 2690. T a m u r a K , N e i M , K u m a r S {2004) P ro sp ec ts fo r in fe rrin g v e ry larg e p h y lo g en ie s b y u s in g th e n e ig h b o r-jo in in g m e th o d . P ro c N a d A c a d Sei U S A 101: 1 1 0 3 0 -1 1 0 3 5 . T a n a b e A S {2011) K a k u s a n 4 a n d A m in o sa n : tw o p r o g ra m s fo r c o m p a rin g n o n p a rtitio n e d , p r o p o rtio n a l a n d s e p a ra te m o d els fo r c o m b in e d m o le c u la r p h y lo g e n e tic an aly ses o f m u ltilo c u s s e q u e n c e d a ta . M o l E c o l R e s o u rc e s 11: 914— 92 1 . R o d rig u e z F, O liv e r J L , M a r in A , M e d in a J R {1990) T h e g e n e ra l sto c h a stic m o d e l o f n u c le o tid e s u b stitu tio n . J T h e o r B iol 142: 4 8 5 -5 0 1 . L iu W T , M a rs h T L , C h e n g H , F o rn e y I J {1997) C h a r a c te riz a tio n o f m ic ro b ia l d iv ersity b y d e te rm in in g te rm in a l r e s tric tio n f ra g m e n t le n g th p o ly m o rp h is m s o f g e n e s e n c o d in g 16S rR N A . A p p l E n v iro n M ic ro b io l 63: 4 5 1 6 -4 5 2 2 . J u n ie r P , J u n ie r T , W itz e i K P {2008) T R iF L e , a p r o g ra m fo r in silico te rm in a l r e s tric tio n f ra g m e n t le n g th p o ly m o rp h is m an aly sis w ith u s e r-d e fin e d se q u en c e sets. A p p l E n v iro n M ic ro b io l 74: 6 4 5 2 -6 4 5 6 . O s b o r n A M , M o o re E R B , T im m is K N {2000) A n e v a lu a tio n o f te rm in a lr e s tric tio n f ra g m e n t le n g th p o ly m o rp h is m {T -R FL P ) an aly sis fo r th e stu d y o f m ic ro b ia l c o m m u n ity s tru c tu re a n d d y n a m ic s. E n v iro n M ic ro b io l 2: 39—50. N e u b e r t K , B r u n n e r E {2007) A stu d e n tiz e d p e rm u ta tio n te s t fo r th e n o n p a ra m e tr ic B e h re n s-F ish e r p ro b le m . C o m p u t S ta t D a ta A n a l 51: 5 1 9 2 —5 2 0 4 . T e a m R D C {2009) R : A la n g u a g e a n d e n v ir o n m e n t fo r sta tistic a l c o m p u tin g , h t tp ://w w w .R - p r o je c t.o r g . Y ello w lees D , R e e s T A V , L e g g a t W {2008) M e ta b o lic in te ra c tio n s b e tw e e n alg al sy m b io n ts a n d in v e rte b ra te hosts. P la n t C e ll E n v iro n 31: 6 7 9 —6 9 4 . I sh ik u ra M , A d a c h i K , M a ru y a m a T {1999) Z o o x a n th e lla e re le a se glucose in th e tissue o f a g ia n t c la m , Tridacna crocea. M a r B iol 133: 6 6 5 —67 3 . 43. V e r b r u g g e n H , V la e m in c k C , S a u v a g e T , S h e rw o o d A R , L e lia e rt F , e t al. {2009) P h y lo g e n e tic an aly sis o f Pseudochlorodesmis stra in s rev e a ls c ry p tic d iv ersity a b o v e th e fam ily lev el in th e sip h o n o u s g re e n alg a e {B ryopsidales, C h lo ro p h y ta ). J P h y c o l 45: 7 2 6 -7 3 1 . 44. V e r b r u g g e n H , A s h w o rth M , L o D u c a S T , V la e m in c k C , C o c q u y t E , e t al. {2009) A m u lti-lo c u s tim e -c a lib ra te d p h y lo g e n y o f th e s ip h o n o u s g re e n algae. M o l P h y lo g e n e t E v o l 50: 6 4 2 - 6 5 3 . 45. J e n s e n K {1993) M o rp h o lo g ic a l a d a p ta tio n s a n d p lastic ity o f r a d u la r te e th o f th e S aco g lo ssa { = A scoglossa) {M ollusca, O p is th o b r a n c h ia ) in r e la tio n to th e ir fo o d p lan ts. B i o lJ L in n e a n S oc 48: 1 3 5 -1 5 5 . 46. H illis-C o lin v a u x L {1980) E c o lo g y a n d ta x o n o m y o f Halimeda: p r im a ry p r o d u c e r o f c o ra l reefs. A d v M a r B iol 17: 1 -3 2 7 . 47. 48. 49. 50. 51. 52. 53. 54. 55. 56. 57. issues. A m M a ia e B ull 29: 1 -2 2 . PLoS ONE I w w w .p lo s o n e .o rg H u g e n h o ltz P , H u b e r T {2003) C h im e r ic 16S r D N A se q u en c e s o f d iverse o rig in a re a c c u m u la tin g in th e p u b lic d a ta b a s e s. I n t J S yst E v o l M ic ro b io l 53: 2 8 9 —293. K a to h K , T o h H {2010) P a ra lle liz a tio n o f th e M A F F T m u ltip le se q u en c e a lig n m e n t p ro g ra m . B io in fo rm a tic s 26: 1899—1900. C a p e lla - G u tie r re z S, S illa -M a rtin e z J M , G a b a ld o n T {2009) trim A l: a to o l fo r a u to m a te d a lig n m e n t trim m in g in larg e -sc a le p h y lo g e n e tic analyses. B io in fo r­ m a tics 25: 1 9 7 2 -1 9 7 3 . T a m u r a K , P e te rs o n D , P e te rs o n N , S te c h e r G , N e i M , e t al. {2011) M E G A 5 : M o le c u la r e v o lu tio n a ry g e n e tic s an aly sis u sin g m a x im u m lik e lih o o d , e v o lu tio n ­ a ry d ista n c e , a n d m a x im u m p a rs im o n y m e th o d s . M o l B iol E v o l 28: 2 7 3 1 —2739. S ta m a ta k is A {2006) R A x M L -V I-H P C : m a x im u m lik e lih o o d -b a se d p h y lo g e n e tic 12 D e n g X W , W in g R A , G ru isse m W {1989) T h e c h lo ro p la s t g e n o m e exists in m u ltim e ric fo rm s. P ro c N a d A c a d Sei U S A 86: 4 1 5 6 —4160. L ü F, X ü W , T ia n C , W a n g G , N iu J , e t al. {2011) T h e B y opsis hypnoides p la s tid g e n o m e : m u ltim e ric fo rm s a n d c o m p le te n u c le o tid e se q u en c e . P L o S o n e 6: e l4 6 6 3 . K a w a g u ti S, Y a m a m o to M , Y a m a su T {1965) E le c tro n m ic ro sc o p y o n th e sym biosis b e tw e e n b lu e -g re e n a lg a e a n d a n O p is th o b r a n c h , Placobranchus. P ro c J p n A c a d 41: 6 1 4 - 6 1 7 . R u m p h o M E , P e lle tre a u K N , M o u s ta fa A , B h a tta c h a ry a D {2011) T h e m a k in g o f a p h o to sy n th e tic a n im a l. J E x p B iol 214: 3 0 3 -3 1 1 . G a n n e s L Z , O B rie n D M , d el R io C M {1997) S ta b le iso to p e s in a n im a l ecology: A ssu m p tio n s, c a v ea ts, a n d a c all fo r m o re la b o r a to r y e x p e rim e n ts . E c o lo g y 78: 1 2 7 1 -1 2 7 6 . K lu m p p D W , G riffith C L {1994) C o n tr ib u tio n s o f p h o to tr o p h ic a n d h e te ro tro p h ic n u tritio n to th e m e ta b o lic a n d g ro w th r e q u ire m e n ts o f 4 species o f g ia n t c la m { T rid a c n id a e ). M a r E c o l P r o g S e r 115: 1 0 3 -1 1 5 . M u s c a tin e L {1967) G ly c e ro l e x c re tio n b y sy m b io tic a lg a e fro m c o ra ls a n d Tridacna a n d its c o n tro l b y th e h o st. S c ien c e 156: 51 6 . M a ru y a m a T , H e s lin g a G A {1997) F e c a l d isc h a rg e o f z o o x a n th e lla e in th e g ia n t c la m Tridacna derasa, w ith re fe re n c e to th e ir in situ g ro w th ra te . M a r B iol 127: 4 7 3 —477. H iro se E , Iw a i K , M a ru y a m a T {2006) E s ta b lish m e n t o f th e p h o to sy m b io sis in th e e a rly o n to g e n y o f t h re e g ia n t clam s. M a r B iol 148: 5 5 1 —55 8 . P a lu m b i S, M a rtin A , R o m a n o S, M c M illa n W , S tice L, e t al. {1991) T h e sim ple fo o l’s g u id e to P C R , v e rsio n 2.0. U n iv e rs ity o f H a w a ii, H o n o lu lu : P riv a te ly p u b lis h e d , c o m p ile d b y S P a lu m b i. H a n y u d a T , A ra i S, U e d a K {2000) V a ria b ility in th e rbcL in tro n s o f C a u le rp a le a n alg a e { C h lo ro p h y ta , U lv o p h y c e ae ). J P la n t R e s 113: 4 0 3 —4-13. J u ly 2 01 2 I V o lu m e 7 | Issue 7 | e 4 2 0 2 4