BIOL 502W Advanced Cell and Molecular Biology Instructor: Office: Telephone: Lecture: Credit: Dr. William H. Jackson SBDG 201A 641-3601 TTh, 9:25AM – 10:40AM in SBDG 200 Three semester hours Office Hours: Email: Course Text: Supplemental texts: Fall 2013 Syllabus By appointment billj@usca.edu The Cell, A Molecular Approach, 5th Ed. by Cooper and Hausman Writing Papers in the Biological Sciences., 5th Edition by McMillan Course Description: A study of the principles of eukaryotic cellular and molecular biology. Three lecture hours per week. Course Objectives: This course is designed to introduce the concepts and underlying principles of eukaryotic cellular and molecular biology. Upon completion of this course students will be expected to 1. 2. 3. 4. 5. 6. 7. 8. Describe the basic properties of eukaryotic cells; List and describe the function of the major biological molecules; Describe the basic function of cellular organelles and structures; Describe DNA replication, repair, and expression; Discuss the nature of gene regulation; Describe the processes of protein synthesis, processing, and regulation; Discuss the nature of cell signaling; and Prepare written reviews of the scientific literature. Attendance Policy: An “F” may be assigned for absences in excess of 25% of regularly scheduled class meetings. Absences, neither excused nor unexcused, absolve the student from meeting class assignments. Exam make-ups will only be allowed for documented, excusable reasons. Quizzes cannot be made up. Disability Statement: If you have a physical, psychological, and/or learning disability that might affect your performance in this class, please contact the Office of Disability Services, B&E 134, (803) 643-6816, as soon as possible. The Office of Disability Services will determine appropriate accommodations based on documentation. Policy for Portable Electronic Devices: The use of any portable electronic devices, including cell phones, pagers, MP3 players, iPods, etc., during class is not allowed for any reason unless prior approval has been given to a student from the instructor or unless required for the course. If you are planning to have any of these devices in class, they must be turned off and stowed away for the duration of the class period. If you use a portable electronic device during a test, quiz, or other assessment, you are eligible to receive a failing grade on that assignment. Methods of Presentation and Evaluation: Information will be presented through lectures and class discussion using appropriate visual aids. Writing assignments will be used to extend the lecture material. There will be three 1-hour exams, a comprehensive final exam, and weekly quizzes that will generally cover the previous 1-2 week’s material. Writing assignments will include reviews of the primary literature, and a research paper based on a question in cellular/molecular biology. WI Designation: Advanced Cellular/Molecular Biology is a designated writing intensive course (BIOL 502W). The goal is not so much to teach writing, but to use writing as a learning tool. During this course we will answer the following questions: How do you ask a good question? How do you develop a thesis? How do you create a well-crafted scientific paper? Writing Assignments: Below is a brief overview of the writing assignments you will be responsible for during the semester. More complete descriptions and tasks will be provided separately. Written products will be evaluated based on one of two rubrics that will be provided with each assignment. Multiple revisions are encouraged during the writing process, and should be based on both peer reviews and conferences with the instructor. Research paper. Your research paper will be on a question or problem of your choosing in eukaryotic cellular/molecular biology. Revisions will be allowed (and expected) based on peer reviews and conferences with the instructor. Research summaries. You will be assigned seven primary research articles from your research paper’s bibliography to summarize. -1- BIOL 502W Advanced Cell and Molecular Biology Fall 2013 Syllabus The basis of student evaluation is shown below: Description Three one-hour exams Final Exam Research Paper Weekly Quizzes Article Summaries Participation Percentage 40% 10% 15% 10% 14% 6% Points 400 100 150 100 140 60 Comments 10% each Comprehensive Topic in Cellular/Molecular Biology From the previous 1-2 weeks material, 10 points each Research article reviews, 20 points each Class participation (4 points per week) Letter grade assignment: A>90%; B+>85%; B>80%; C+>75%; C>65%; D+>55%; D>50%; F<50%. You will be expected to endorse the USCA HONOR PLEDGE on every assignment: 'On my honor as a University of South Carolina Aiken student, I have neither given nor received any unauthorized aid on this assignment/examination. To the best of my knowledge, I am not in violation of academic honesty'. TENTATIVE LECTURE SCHEDULE DATE Aug 22 Aug 27 Aug 29 Sep 3 Sep 5 Sep 10 Sep12 Sep 17 Sep 19 Sep 24 Sep 26 Oct 1 Oct 3 Oct 8 Oct 10 Oct 15 Oct 17 Oct 22 Oct 24 Oct 29 Oct 31 Nov 5 Nov 7 Nov 12 Nov 14 Nov 19 Nov 21 Nov 26 Nov 28 Dec 3 Dec 5 Dec 10 WEEK 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 TOPIC The Composition of Cells The Composition of Cells The Composition of Cells The Organization and Sequences of Cellular Genomes The Organization and Sequences of Cellular Genomes Exam I Replication, Maintenance, and Rearrangement of Genomic DNA Replication, Maintenance, and Rearrangement of Genomic DNA Replication, Maintenance, and Rearrangement of Genomic DNA Replication, Maintenance, and Rearrangement of Genomic DNA RNA Synthesis and Processing RNA Synthesis and Processing RNA Synthesis and Processing Exam II Protein, Synthesis, Processing, and Regulation Protein Synthesis, Processing, and Regulation Fall Break (Oct 17-18) – No Classes Protein Synthesis, Processing, and Regulation Protein Sorting and Transport Protein Sorting and Transport Protein Sorting and Transport Protein Sorting and Transport The Plasma Membrane Exam III The Plasma Membrane The Plasma Membrane Cell Signaling Cell Signaling Thanksgiving Holiday (Nov 27-29) – No Classes Cell Signaling Cell Signaling FINAL EXAM; 8 AM -2- CHAPTERS 2 2 2 5 5 2-5 6 6 6 6 7 7 7 8 6-7 8 8 10 10 10 10 10 8-10 13 13 15 15 15 15 Comprehensive