Microfluidic-based 3D cell culture for studies of biophysical and ARCHNES biochemical regulation of endothelial function by Vernella V. V. Vickerman Masters of Science in Chemical Engineering Practice (M.S. CEP) Massachusetts Institute of Technology, Cambridge, MA, 2006 Bachelors of Science in Chemical Engineering (B.S.) Howard University, Washington D.C., 2003 SUBMITTED TO THE DEPARTMENT OF CHEMICAL ENGINEERING IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN CHEMICAL ENGINEERING AT THE MASSACHUSETTS INSTITUTE OF TECHNOLOGY JUNE 2012 @ 2012 Vernella V. V. Vickerman. All rights reserved. The author hereby grants to MIT permission to reproduce and to distribute publicly paper and electronic copies of this thesis document in whole or in part in any medium now known or hereafter created Signature of Author: Department of Chemical Engineering, MIT March 12, 2012 Certified by: Roger D. Kamm Cecil and Ida Green Distinguished Professor of Biological and Mechanical Engineering, MIT Thesis Supervisor Certified by: Paula T. Hammond David H. Koch Professor in Engineering Department of Chemical Engineering, MIT Thesis Supervisor Accepted by: William M. Deen Professor of Chemical Engineering Chairman, Committee for Graduate Students Thesis Committee Advisor: Roger D. Kamm Cecil and Ida Green Distinguished Professor of Biological and Mechanical Engineering Director of EBICS Massachusetts Institute of Technology Advisor: Paula T. Hammond David H. Koch Professor in Engineering Department of Chemical Engineering Massachusetts Institute of Technology Associate Editor, ACS Nano David H. Koch Institute for Integrative Cancer Research Chair: William M. Deen Carbon P. Dubbs Professor and Graduate Officer Department of Chemical Engineering Chairman, Committee for Graduate Students Massachusetts Institute of Technology Member: Jeffrey T. Borenstein Director Biomedical Engineering Center Charles Stark Draper Laboratory Member: Carlos E. Semino Assistant Professor of Bioengineering Universitat Ramon Llull 2 Microfluidic-based 3D cell culture for studies of biophysical and biochemical regulation of endothelium function by Vernella V. V. Vickerman Submitted to the Department of Chemical Engineering March 12, 2012 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Chemical Engineering Abstract New and more biologically relevant in vitro models are needed for use in drug development, regenerative medicine, and fundamental scientific investigations. The ultimate challenge lies in replicating the native cell/tissue environment ex vivo. Certain key features of living tissues such as the three dimensionality, biophysical and biochemical microenvironment cannot be readily replicated in traditional culture platforms. Moreover, the capability for multi-parameter manipulation, on a single platform, with the optical resolution to monitor the dynamics of individual cells or small populations is lacking. In this thesis, we developed a novel multiparameter microfluidic-based cell culture platform. The system permits 2D or 3D culture of cells on/in biologically-derived or synthetic hydrogel scaffolds and allows for controlled flow rates, pressure and concentration gradients while directly visualizing cellular response. In addition to the realtime and post-fixation imaging using optical microscopy, methods were developed to extend post-fixation analysis to transmission electron microscopy (TEM). The platform was subsequently used to demonstrate for the first time, two microfluidicbased 3D in vitro assays with direct relevance to tumor development and glaucoma. For the first assay, biochemical induced sprouting was demonstrated. Endothelial cells sprout from an intact monolayer to form multicellular capillary-like structures. Furthermore, using time-lapse microscopy the cellular dynamics during sprouting angiogenesis were observed with great detail, showing tip cell dynamics, cell division events and lumen formation. Of particular relevance to tissue engineering community, we demonstrated that endothelial cells when cultured for several days can assemble into vascular networks with open, perfusable lumen. Using this new system, we present novel findings and results supporting a potential mechanism for flow-mediated mechanical regulation of angiogenesis by 3 transendothelial fluid flow. We demonstrate that flow direction is sufficient to define an angiogenic ON or OFF state. The balance is tipped by forces generated at mechano-sensitive cell-matrix adhesions involving FAK-mediated signaling. These results provide one explanation for the bias towards angiogenesis occurring from the venous side of the circulation. For the second assay, an aqueous humor (AH) outflow model was developed. Subsequent proof-of-concept experiments confirmed its capability for studying the role of the inner wall endothelium in the regulation of AH outflow dynamics. Thesis Supervisor: Roger D. Kamm Title: Cecil and Ida Green Distinguished Professor of Biological and Mechanical Engineering, MIT Thesis Supervisor: Paula T. Hammond Title: David H. Koch Professor in Engineering Department of Chemical Engineering, MIT David H. Koch Institute for Integrative Cancer Research 4 DEDICATION To my Family The two most Influential Women in my life Amanda Evans - "mama" Janett Evans - "mommy" My Devoted Husband James Paul Kelley My Adorable Daughter Vahnyah Vickerman Kelley Thank YOU For Your Sacrifices YourLove And Your Endless Support! "The most authentic thing about us is our capacity to create, to overcome, to endure, to transform, to love and to be greater than our suffering." -Ben Okri 5 Biographical Note Vernella Vickerman Education e Chemical Engineering Doctoral Candidate, Massachusetts Institute of Technology, Cambridge, MA * * Master of Science in Chemical Engineering Practice (MSCEP), Massachusetts Institute of Technology Bachelor of Science (B.S.) in Chemical Engineering at Howard University, Washington DC (summa cum laude GPA: 4.0/4.0) Industrial Experience * " Project Consultant Glaxo-Smith- Kline Pharmaceuticals (GSK, England). Drug Particle Characterization and Dissolution Kinetics Project Consultant. General Mills (GM, Minnesota, USA). Dough Rheology and Process Parameter Optimization Research Experience " * * * Graduate Researcher, Chemical Engineering, MIT. Thesis Advisors: Dr. Roger D. Kamm and Dr. Paula Hammond Undergraduate Researcher, Chemical Engineering Department, Howard University. Advisor: Dr. Ramesh Chawla Research Project: Soil Remediation, Trichloroethylene (TCE) dissolution kinetics and reaction kinetics in soil and aqueous systems. Undergraduate Researcher, Howard University Physical Chemistry Lab Advisor: Dr. Helen de Clercq Research Project: Ion Optics for Cross Beam Apparatus Undergraduate Researcher, Howard University Chemistry Laser Laboratory. Advisors: Dr. Joshua Halpern & Dr. Helen de Clercq Research Project: Photoablation of Polymer Films: Characterization of potential polymer substrate for the support and deployment of Solar Sails. Teaching Experience * Teacher's Assistant for 10.25: Industrial Chemistry and Chemical Process Pathways, MIT " " " Teacher's Assistant for Chemical Engineering Analysis, Howard University Teacher's Assistant for Chemical Engineering Calculation, Howard University Personal Tutor: Algebra, Geometry, Differential Equations 6 Students Supervised * e e * e * * Johnathan Cyr, currently graduate student at BU Cathy Nguyen, NECO Program. Currently graduate student at SCCO Joseph Atnafu, MIT UROP Pablo Rosado, currently Graduate Student at Berkeley Christine Yu, currently Medical Student at BU John Casey, AMGEN UROP Program. Currently MIT Graduate Student Emily Yiqi Li, MIT UROP. Currently a Consultant at Oliver Wyman Other Positions Held * " " " Project Consultant. Kamm Lab NUS, Singapore MIT Summer Research Program (MSRP) Group Leader and Program Assistant Public Service Fellow, Supervisor Don Monahan; Project: Methods to integrate Reading in Science Curriculum - Create a Database of Supplementary Material for 7th and 8th Grade Cambridge Public School Science Curriculum Howard University - Baltimore/Washington Area Community College Chemistry REU Program Research Mentor. Advisor: Dr. Helen de Clercq Supervised and provided support for a group of community college REU students. Awards and Honors e " " e e " " * * * * " * " " * MD Anderson TRAMCEL Best Poster Award Molecular, Cell & Tissue Biomechanics Trainee NIBIB Research Grant Supplement MIT Public Service Fellowship Keith and Helen Rumbel Fellowship Tau Beta Pi Fellowship National Capital Section AIChE and Exxon Mobile Research and Engineering Award Award of Excellence by Howard University Chemical Engineering Faculty Howard University Academic Achievement Highest GPA Tau Beta Pi Record Scholar Merck Index award Tau Beta Pi Scholarship for College of Engineering, Architecture and Computer Science sophomore of the Year Tau Beta Pi Scholarship for College of Engineering, Architecture and Computer Science freshman of the year National Deans' List Howard University Trustee Scholarship Archie Alexander Scholarship 7 Publication List 1. Vickerman V, Blundo J, Chung S, Kamm RD. Design, fabrication and implementation of a novel multiparameter control microfluidic platform for three-dimensional cell culture and real-time imaging. Lab Chip, 2008, 8, 1468-1477. (LF.=6.478;2008),selected Top 10 Articles for Lab on a Chip in September (with 779 access), [Cited by 66] 2. Chung S, Sudo S, Mack PJ, Wan C-R, Vickerman V, Kamm RD. Cell migration into scaffold under coculture conditions in a microfluidic platform. Lab Chip, 2009, 9(2):269-75. (I.F.=6.478;2008), selected Top 10 Articlesfor Lab on a Chip in January(with 589 access), [Cited by 74] 3. Mack PJ, Zhang Y, Chung S, Vickerman V, Kamm RD, Garcia-Cardena G. Biomechanical regulation of endothelium-dependent events critical for adaptive remodeling. J Biol Chem. 4. Sudo R, Chung S, Zervantonakis IK, Vickerman V, Toshimitsu Y, Griffith LG, Kamm RD. Transport mediated angiogenesis in 3D epithelial coculture. FASEB J, 2009,23, 7, 2155- 2009, 284(13):8412-8420. (IF.=5.52;2008), [Cited by 16] 2164. (LF.=7.049; 2008), [Cited by 31] 5. Abdul Rahim NA, McDaniel W, Bardon K, Srinivasan S, Vickerman V, So PTC, Ho Moon J. Conjugated Polymer Nanoparticles for Two-Photon Imaging of Endothelial Cells in a Tissue Model. Advanced Materials,2009,21(34):3492-3496 (May 2009). (IF.=8.191; 2008), [Cited by 14] 6. Chung S, Sudo R, Vickerman V, Zervantonakis IK, Kamm RD, Microfluidic platforms for studies of angiogenesis, cell migration, and cell-cell interactions, Annals of Biomedical Engineering,2010, 38(3), 1164-1177 (LF.=2.605; 2008), [Cited by 13] 7. 8. Vickerman V, Kim C, Kamm RD MicrofluidicDevicefor Angiogenesis in Mechanical and Chemical Signaling in Angiogenesis Book Chapter 2011 Submitted Vickerman V, Kamm RD, Mechanical regulation of angiogenesis Under review Conference Proceedings and Presentation 1. 2. 3. 4. 5. Vickerman Kelley V, Chung S, Wan CR, Mack P, Kamm RD, 2007, Microfluidic Bioreactors for Studying Angiogenesis, The Annual Hilton Head Workshop, Hilton Head, GA, 05/2007, Poster Presentation Vickerman Kelley V, Kamm RD, 2007, Microfluidics Bioreactor: A Platform for Studying Capillary Morphogenesis in Response to Biochemical and Biophysical Cues, SBC2007, Keystone, Colorado, Podium Presentation (PhD Paper competition - Honorable Mention) Vickerman Kelley V, Kamm RD, 2007, Microfluidics Bioreactor: A Platform for Studying Capillary Morphogenesis in Response to Biochemical and Biophysical Cues, NIBIB Grant Trainees Meeting, Keystone, Colorado, Poster Presentation Vickerman Kelley V, Kamm RD, 2007, In vitro microfluidic platform for the study of sprouting angiogenesis, BMES2007, Los Angeles, California, Podium Presentation Casey JP, Vickerman Kelley V, Kamm RD, 2008, Optimizing Vascular Morphogenesis in a Self-Assembling Peptide Hydrogel, IBE 2008, PosterPresentation 8 6. I.Zervantonakis, S.Chung, R.Sudo, V.Vickerman, P.Mack, C.Wan, R.D.Kamm, 2008, A Novel Microfluidic Bioreactor for Studying Capillary Morphogenesis, MEMS@MIT, Cambridge, MA, 04/2008 7. R.D.Kamm, V.Vickerman, S.Chung, R.Sudo, I.Zervantonakis, 2008, Regulating Capillary Morphogenesis in a Microfluidic System, BME2008, London, UK, keynote lecture 8. R.D.Kamm, V.Vickerman, S.Chung, I.Zervantonakis, S.de Valence, R.Sudo, 2008, Microfluidic systems for mimicking in vivo conditions, ICBME2008, Singapore,12/2 008, keynote lecture 9. R.Sudo, S.Chung, I.Zervantonakis, V.Vickerman, Y.Toshimitsu, L.Griffith, R.D.Kamm, 2008, Microfluidic platform for the three-dimensional coculture of hepatocytes and endothelial cells, BMES 2008 Annual Fall Meeting, St. Louis, MO, 10/2008, PosterPresentation 10. P.J.Mack, Y.Zhang, S.Chung, V.Vickerman, R.D.Kamm, G.Garcia-Cardena, 2008, Collateral Flow Regulates Endothelial-dependent Events Critical for Adaptive Remodeling, NIBIB Grant Trainees Meeting, Bethesda, MD, 06/2008, Poster Presentation 11. R.D.Kamm, R.Sudo, V.Vickerman & S.Chung, 2009, Using microfluidics to study coordinated cell population behavior, ICCB 2009, Bertinoro (Forli), Italy, 9/16-9/18, invited speaker 12. V. Vickerman, J. Cyr, C. Yu, H. Gong, R Kamm, 2010, Direct Imaging of Giant Vacuole Dynamics of Schlemm's Canal Endothelial Cells Using a Novel In Vitro Microfluidics-Based 3D Cell Culture System, ARVO 2010, Ft. Lauderdale, FL, 5/2010, Podium Presentation 13. V. Vickerman, RD Kamm, 2010, A Flow-gated angiogenesis switch, MIT Biological Engineering Annual Retreat, Newport, RI, 03/2010, Poster Presentation 14. V. Vickerman, RD Kamm, 2010, A Flow-gated angiogenesis switch, NIBIB Grant Trainees Meeting, Bethesda, MD, 06/2010, Poster Presentation 15. V. Vickerman, RD Kamm, 2010, A Flow-gated angiogenesis switch, WCB 2010, Singapore, 08/2010, Podium Presentation 16. V. Vickerman, RD Kamm, 2010, Eye-on-a-chip: Applications for Glaucoma Research, MIT BioMAN, 11/2010, Poster Presentation 17. V. Vickerman, RD Kamm, 2011, Investigating the effects of the biophysical microenvironment on tumor angiogenesis, SPRBM 2011, Poster Presentation, MD Anderson TRAMCEL Best Poster Award. 18. R.D. Kamm, V. Vickerman, W Polacheck, 2011, Going against the flow: Mechanotransduction in the interstitium, BMES 2011, Keynote Presentation. PATENTS AND TECHNOLOGY DISCLOSURE * PCT Application: Three-dimensional microfluidic platforms and methods of use thereof. Filed April 8, 2009 based on a Technology Disclosure filed April 8, 2008. Published October 15, 2009. * Technology Disclosure: Surface modifications, patterning of surface modifications, and novel manufacturing methods for a microfluidic platform containing a threedimensional scaffold. Filed Oct 6,2009. SCIENTIFIC AND PROFESSIONAL SOCIETIES * * Society for Physical Regulation in Biology and Medicine The Association for Research in Vision and Ophthalmology (ARVO) 9 e e * * * e e e e e National Organization for the Advancement of Black Chemist and Chemical Engineers NOBCChe - MIT Chemical Engineering Representative Member of NOBCChe President, Academy of Courageous Minority Engineers (ACME) Biomedical Engineering Society (BMES) Golden Key International Honour Society Vice President of American Institute of Chemical Engineers (AIChE) Recording Secretary of Tau Beta Pi DC Alpha Chapter Member of Tau Beta Pi Honor Society Member of National Society of Black Engineers (NSBE) Member of AIChE VOLUNTEER WORK " e * e e ACCESS: A Community in Chemical Engineering Select Symposium, MIT. Program targets under-represented minority students, and provides an overview of the potential benefits of a graduate chemical engineering degree. Roxbury YMCA: Design Summit, interactive workshop for young people interested in design, landscaping and urban planning. MIT ESP: SPARK. Program targets middle and high school student. Department of Chemical Engineering and ODGE Graduate Recruiting iMATH after school program, mentors help 8th graders to understand and appreciate math. 10 Acknowledgement "I will lift up my eyes unto the hillsfrom whence cometh my help. My help cometh from the Lord, which made heaven and earth." - Psalms 121:1:2 It would not have been possible to complete this journey without the support of the people around me. I would like to thank my thesis advisors Roger D. Kamm and Paula T. Hammond for their support. I am especially thankful to my primary advisor, Roger for giving me the opportunity to work in his lab and scientific freedom to pursue my passion. I am grateful to my thesis committee members Jeffrey T. Borenstein, William M. Deen and Carlos E. Semino for their time and dedication. To my professors at Howard University Ramesh C.Chawla, Joseph N. Cannon, John P. Tharakan, William E. Collins, Robert J. Lutz, M. Gopala Rao, Mobolaji E. Aluko, Helen L. deClercq, Joshua B. Halpern, Jesse M. Nicholson and Oladapo Barake thank you for preparing me for this journey. To the current and past members of the Kamm Lab, thank you. I am especially grateful to Alisha SarangSieminski. Thank you for your constant and endless support throughout the years. To my student accountability group, ACME, thank you creating a sense of community. Aisha, Reggie, Legena, Melva, Zenzi, Melissa, Obi, Joy, Isaac, Rhonda, Robbin, Shauni, Lincoln, Eric thanks for sharing your journey with me. To Dean Blanche Staton, thank you for your wisdom, vision, love and support. To my "adopted" family and relatives, Leisa, Aunt Becky, Uncle Barry, Twila, Bruce, Grandma Stutzie, Grandpa Ollen thank you for love and prayers. To Nigel Neil, thank you for you love and support. Finally to my family mommy (Janett), mama (Amanda), Paul and Vahnyah words cannot adequately express my appreciation and gratitude. I dedicate this thesis to you. 11 Blank Page 12 Table of Contents Thesis Committee 2 Abstract 3 DEDICATION 5 Biographical Note 6 Acknowledgement 11 List of Figures 17 List of Tables 19 Chapter 1: a. Introduction and Background Information 20 Endothelial Cells i. 20 Vascular Endothelial Microenvironment Endothelial Mechanotransduction ii. 1.1.1 21 23 Implication of Endothelial Cells in Disease Pathogenesis 26 b. Motivation for in vitro model systems 27 c. Microfabrication Biological Sciences * 30 i. Advent of Microfluidics 30 ii. Microfluidic devices for angiogenesis Microfluidics for tissue engineering applications 31 iii. d. 41 Thesis Aims and Overview Chapter 2: 41 Microfluidic-based3D cell culture platformsfor biologicalstudies** 45 a. Chapter Abstract 45 b. Introduction 46 Material and Methods 49 c. i. ii. iii. iv. v. vi. vii. viii. d. Microfluidic Bioreactor Design Device Fabrication and Surface Modification Scaffold Loading Microinjection System and Device Assembly Demonstration of Concentration Gradient across Gel in p1FD with and without Channel Flow Cell Culture and in vitro capillary morphogenesis models 49 Characterization of capillary morphogenesis and tube-like structures Microvascular Endothelial Cells Sprouting Movies 54 50 50 52 53 55 Cytoskeleton and Nuclei Staining 56 Results i. ii. iii. iv. 3D microfluidic bioreactor (ptFD) Concentration gradient maintained in ltFD Microfluidic cultures, model system: capillary morphogenesis ECs invade 3D matrix to form capillary-like structures reminiscent of sprouting angiogenesis 56 56 59 60 __ 62 13 v. vi. ECs suspended in 3D collagen gels form capillary-like structures 2D surface migration promotes formation of tube-like structures 64 65 e. Discussion and Conclusions 67 f. Acknowledgements 69 g. Supplementary Material 70 i. Optimization of gel cage geometry 70 ii. PDMS surface treatment facilitates scaffold microinjection 70 iii. 71 iv. Finite element analysis for diffusion of a non-reactive solute in microfluidic device Simultaneous control for fluid flow and gradients v. vi. Time-Lapse Video-Microscopy# Supplementary Figures 73 74 71 Appendix I: Implementation of microfluidic-based 3D cell culture platform in coculture and imaging studies 80 Appendix III: Biochemical Regulation of Angiogenesis: Vascularization of Scaffolds in a Microfluidic Cell Culture Platform vii. Biomaterial Scaffold 82 82 Appendix II: Microfluidic Device Design Gallery 92 Chapter 3: A Model for Aqueous Humor Outflow across the Inner Wall of Schlemm's Canal: Direct Imaging of Giant Vacuole Dynamics using an in vitro Microfluidic-based Platform 93 a. Introduction 93 b. Background i. Aqueous humor circulatory pathway ii. Aqueous Humor Outflow and Glaucoma iii. The Inner Wall of Schlemm's Canal iv. Juxtacanalicular Tissue (JCT) v. Ex vivo aqueous humor outflow models 94 94 95 96 98 100 c. Materials and Methods * i. Cell Handling, Maintenance and Culture 106 106 ii. 3D Matrix 106 iii. iv. v. vi. vii. hSCEC monolayer formation and perfusion Visualization of Giant Vacuole Dynamics Evaluation of Fluid Hydrodynamic Filtration Pattern Effect of pharmacological inhibitor Y27632 Post fixation Imaging 107 108 109 110 110 d. Results 113 14 i. 3D Matrices for hSCEC culture: Collagen type I and Matrigel 113 ii. Primary Schlemm's Canal endothelial cells on 3D matrix as a model for AH outflow and formation of Giant Vacuole-like Structures 116 iii. Real-time Visualization of Giant Vacuole Dynamics 118 iv. v. vi. Pharmacological Inhibition Hydrodynamic Filtration Pattern Ultrastructure by new TEM method for microfluidic samples 120 122 124 e. Discussion and Conclusions 127 f. Appendix: Supplementary Material 130 g. Appendix: hSCEC Maintenance and Microfluidic Protocol 138 Chapter 4: Biomechanical regulation of angiogenesis ** 151 a. Chapter Abstract 151 b. Introduction 152 Materials and Methods 154 c. d. e. i. Cell Culture 154 ii. Microfluidic - based cell culture platform 154 iii. Imaging 155 iv. EC monolayer formation and characterization 155 v. In vitro transendothelial flow angiogenesis assay 156 vi. Evaluation of signal transduction at cell-matrix adhesions 156 vii. Localization of signaling protein viii. Pharmacological Inhibition ix. Antibody Labeling and Counterstaining 157 158 159 Results i. Formation of a functional EC monolayer ii. Switching response evoked by transendothelial flow 159 159 162 iii. 164 iv. Multiple signaling pathways are involved in B-A flow induced sprouting angiogenesis B-A flow activation occurs via FAK-mediated signaling v. Transendothelial flow direction differentially affects VE-cadherin localization 168 vi. vii. Transendothelial flow direction differentially affects actin cytoskeletal organization VE-Cadherin delocalization is mediated by Src 169 171 166 Discussion and Conclusions i. Flow direction acts as an angiogenic switch ii. EC activation is due to mechanical stimulation 172 173 173 iii. B-A Flow increases FAK-mediated signaling at cell-matrix adhesions B-A flow induced VE-Cadherin delocalization and angiogenesis are mediated by Src 174 iv. v. vi. Reorganization of actin cytoskeleton by transendothelial flow Force estimates acting on the monolayer 177 177 176 15 vii. f. Summary Proposed Model Supplementary Information i. Characterization of EC monolayer transport properties 178 180 180 g. Appendix IV: Concentration Polarization 191 h. Appendix: Immunolabeling Protocol for Microfluidic Samples 199 Chapter 5: Concluding Remarks and Future Directions 201 a. Summary of Thesis Contributions 201 b. Future Research Directions 206 c. Closing Thoughts 209 Chapter 6: Works Cited 210 16 List of Figures Figure 1-1: Vascular endothelial m icroenvironm ent .......................................................................... Figure 1-2: Cellular M echanotransduction ......................................................................................... 22 25 Figure 1-3: Role of Endothelial Cells in Atherosclerosis and Metastatic Cancer.............................27 Figure 1-4: H istory of cell culture ....................................................................................................... 29 Figure 1-5: Schem atic of Microfluidic Device Fabrication: ................................................................. Figure 1-6: M icrofluidic-based Angiogenesis Assays ......................................................................... Figure 2-1: Schematic of [tFD and scaffold loading protocol. ........................................................... Figure 2-2: Experim ental design and device capabilities ................................................................... 31 40 58 61 Figure 2-3: Microvascular endothelial cells sprout to form capillary - like structures...................64 Figure 2-4: 2D migration promotes sheet-like and tube-like structures...........................................66 Figure 2-5: Single suspended microvascular endothelial cells form multi-cellular structures..........67 Figu re 2-6 : Gel cage geom etry..................................................................................................................75 Figure 2-7: Scaffold delivery into microfluidic device via microinjection procedure. .................... 76 Figure 2-8: Distribution of a non-reactive solute in scaffold cage....................................................77 Figure 2-9: Evolution on the concentration profile across the "gel cage" with a constant flow rate in m icro flu id ic ch an n els................................................................................................................................78 Figure 2-10: Evolution of liquid pressure differential across "gel cage" induces interstitial flow through the three-dim ensional scaffold. ............................................................................................. 79 Figure 2-11: Diverse Applicability of Microfluidic-based 3D cell culture platform.........................80 Figure 2-12: 3D encapsulation assay ................................................................................................... 86 Figure 2-13: HMVEC Sprouting Assay - RAD16-1 and RAD16-I plus PRG & KLT............................87 Figure 2-14: Capillary morphogenesis on RAD16-I/PRG/ KLT self-assembling peptide gels........88 Figure 2-15: Single cell migration through RAD16-I/PRG/KLT functionalized self-assembling p e p tid e g e ls ................................................................................................................................................ 89 Figure 2-16: Example of microfluidic design and mask layout ....................................................... 92 Figure 3-1: Conventional flow pathway of aqueous humor............................................................... Figure 3-2: Two main types of glaucoma, open-angle and angle-closure glaucoma ....................... 95 Figure 3-3: Inner W all of Schlem m 's Canal ......................................................................................... Figure 3-4: Juxtacanalicular Tissue..................................................................................................... 98 Figure 3-7: Adhesion dynamics of hSCEC to pure Matrigel hydrogels........................................... Figure 3-8: Adhesion of hSCEC to Collagen/Matrigel Blended gels ............................................... 114 96 99 Figure 3-5: Ex vivo anterior segm ent perfusion m odel........................................................................ 102 Figure 3-6: In vitro SCE m onolayer perfusion m odel...........................................................................104 115 Figure 3-9: Comparison of Giant Vacuole morphology from in vivo and in vitro studies..................117 Figure 3-10: Giant Vacuole-like structure dynamics: Perfusion at constant flow rate......................119 Figure 3-11: Giant Vacuole-like structure dynamics: Perfusion at constant pressure......................120 17 Figure 3-12: Effect of Y27632 on giant vacuole-like structures .......................................................... Figure 3-13: Variation in tracer labeling pattern ................................................................................. 121 123 Figu re 3 -14 : B ead T races ........................................................................................................................ 124 Figure 3-15: Light and Transmission Electron Microscopy.................................................................126 Figure 3-16: hSCEC spreading on collagen gels of different concentration........................................130 Figure 3-17: hSCEC monolayer extends membrane projections in underlying matrix.....................131 Figure 3-18: Expression profile of junction proteins in cultures hSCEC ............................................ 133 Figure 3-19: Pressure gradient sensitivity of GVL structures ............................................................. 134 Figure 3-20: Evaluation of bead passage through 3D matrix in "gel-cage" region ............................ 135 Figure 3-21: Evaluation of bead passage through 3D matrix .............................................................. 136 Figure 3-22: Experim ental estim ation of gel perm eability..................................................................137 Figure 3-23: Constant Flow Rate and Pressure Setups ........................................................................ 147 Figure 4-1: Microfluidic-based 3D cell culture system for studies of the effects of transendothelial flow on sprouting angiogenesis from an endothelial monolayer........................................................161 Figure 4-2: Transendothelial flow direction modulates EC monolayer phenotype...........................163 Figure 4-3: Inhibition of B-A flow induced angiogenesis by small molecule pharmacological in h ib ito rs............................................................ . . . ............................................................................. 16 5 Figure 4-4: B-A flow promotes activation of integrin-mediated adhesion in endothelial monolayers. ............................................................... ... -----......................................................................................... 16 7 Figure 4-5: B-A flow induces delocalization of VE-cadherin ............................................................... 169 Figure 4-6: B-A flow direction affects distribution of cortical actin....................................................170 Figure 4-7: Src mediates B-A flow induced remodeling at cell-cell junction......................................172 Figure 4-8: Expression profile of adherens (VE-Cadherin, RED) and tight (ZO-1, GREEN) junctional proteins in HMVEC cultured on glass substrate (static culture) ......................................................... 185 Figure 4-9: Sprouting response of microvascular (HMVEC) and macrovascular (HUVEC) endothelial cells to B -A flow .. . . . .................................. .......................................................................................... 186 Figure 4-10: Estimation of EC Monolayer Diffusional Permeability (Pd)............................................187 Figure 4-11: Bead Tracer Method for Flow Characterization..............................................................188 Figure 4-12: Negative controls and secondary antibody cross reaction test. .................................... Figure 4-13: Device geom etry in COM SOL ............................................................................................ 190 Figure 4-16: Predicted Relationship between Polarization Distance and Pecletendo ......................... Figure 4-17: FEM solution for solute concentration as a function of distance................................... 196 192 Figure 4-14: Solute drag reflection coefficient ..................................................................................... 194 Figure 4-15: Predicted Relationship between EC Monolayer Sieving Coefficient and Peclet Number ............................................................................... ---....... . . . ................................................................ 19 5 197 18 List of Tables Table 1-1: Comparison of Blood, Lymphatic and Schlemm's canal endothelial cells ...................... Table 1-2: Pro- and anti- Angiogenesis Factors ................................................................................. 21 35 Table 1-3: Angiogenesis related diseases............................................................................................ Table 2-1: Dimensions for microfluidic network............................................................................... 36 Table 4-1: FAK and p-FAK Y397 Antibody Evaluation......................................................................... 189 74 19 Chapter 1: Introduction and Background Information a. Endothelial Cells Endothelial cells (EC) form the innermost cellular lining of the circulatory and lymphatic systems. Consequently, they are in direct contact with blood (blood/vascular EC), lymph (lymphatic EC) and circulating cells (e.g. neutrophils) (1). In the eye, there is a special class of EC known as Schlemm's canal endothelial cells that are in contact with neither blood nor lymph but a special fluid known as aqueous humor (AH) which functions as the blood analog for ocular tissues. Table 1.1 (2) provides a comparison of different class of EC with regards to structural characteristics, transmural flow direction and "priority" during development. Within the vascular tree however there is some structural heterogeneity in the EC monolayer and are classified as continuous, fenestrated or discontinuous (1). Furthermore, transmural flow direction is reversed at postcapillary venules and potentially within tumor microenvironments. The embryonic origin of vascular and lymphatic endothelial and the regulatory mechanisms underlying cell fate determination is widely agreed upon (3). Differentiation of hemangioblasts gives rise to angioblast (endothelial progenitor cells) which subsequently produces endothelial cells. Following arterial-venous specification a subpopulation of venous cells further differentiates to produce lympatic endothelial cells. The origin of Schlemm's canal endothelial cells has also been debated. Due to recent compelling evidence it is now accepted that they originate from the intrascleral venous plexus and not the neural crest as previously believed (2). 20 Comparison of BECs, LECs, and SCECs BEC Endotheial monolayer cond m Basement membrane Pericytes Basement membrane thickness Monolayer thickness interendothelial junctions Cell-cell heterotypic junctions Extracellular structures Flow direction Development Comparison of BEC(. feat ure. Continuous Yes 50nm 0.2-0.3 pm Tight junctions, adherens junctions. gap juncdons Paicytes None Apical to basal Primary SCEC LEC Contnuous Diondnuous No Condnma 60-80 nm 400nm 0. 1-0.6pm Macula adherens No s 1 pm None Tight junctions gap junctons, adhrs junctims JCT Anchoring filaments Basal-to-pial SeCOndary Tendoms septs a1sal-S-picar Secondary Lt Cs. and SCECs. Highlighted seti ons indicae the EC type thati is more similar to SCEC for ech given Ramos et al., J Glaucoma (2007) 16. 391-405 Table 1-1: Comparison of Blood, Lymphatic and Schlemm's canal endothelial cells Table reproduced from Ramos et al., 2007 (2). i. Vascular Endothelial Microenvironment Hemodynamic Environment. Endothelial cells are naturally found in a mechanically active environment. In vivo, vascular endothelial cells constitute the lumen of blood vessels and in small capillaries they compose the vessel with some pericyte coverage. Consequently, ECs are exposed to various mechanical forces including shear stress (blood flow), compressive (blood pressure acting perpendicular to vessel wall) and tensile (cyclic stretch from pulsatile flow) forces. Chemical Environment. Products of circulating cells, interstitial cells and components of plasma give rise to a complex chemical vascular environment (Figure 1-1). In neoplastic tissues, tumor cells produce a cocktail of additional factors that influences endothelial phenotype. 21 Other factors. The structure of blood vessels varies along the vascular tree which gives rise to different local environments. Arteries, arterioles, venules and veins are composed to three layers (a) Intima: the endothelium and associated basement membrane; (b) Media: smooth muscle cells and elastic connective tissue and (c) Adventitia: connective tissue containing collagen and elastin. Blood Endothelium Smooth muscle - Red blood cells - Extracellular - Signaling molecules - 1eukocytes - Platelets matrix - Cell-cell contacts - Signaling molecules Blood vessel - Shear stress TV Figure 1-1: Vascular endothelial microenvironment Image and text reproduced from van der Meer et al. 2009 (4). Schematic overview of a blood vessel and the endothelial cell microenvironment. The inner wall of a blood vessel (left) consists of a layer of endothelial cells that are embedded in a three-dimensional microenvironment (right). This environment consists of cell biological, biochemical, and physical stimuli, such as red and white blood cells, signaling molecules, and shear stress, respectively. Mimicking this complex microenvironment in vitro is a major challenge in vascular research. 22 ii. Endothelial Mechanotransduction Mechanotransduction refers to the mechanisms by which mechanical forces are converted to biochemical signals. Most tissues and cells have the capability to sense and respond to mechanical stimulation. Mechanotransduction signaling is vital in mechanically stressed tissues including muscle, bone, cartilage and blood vessels (5). The underlying mechanisms have been investigated in sensory cells (6); cardiac myocytes (7); endothelial cells (8), (9), (10); vascular smooth muscle cells (11) and tumor cells (12). In addition cells are also able to generate stresses. Moreover, mechanical stress influences a wide range of biological processes important for embryonic development (13) and adult physiology (for review on vascular physiology see (14)) and diseases including deafness, atherosclerosis, heart failure, glaucoma and cancer to name a few (see (15), (5) excellent reviews). At the cellular level mechanical forces impact cell signaling and functions important for adhesion apoptosis, proliferation, migration and differentiation (5). Mechanotransduction in endothelial cells have been studied extensively with both in vitro and in vivo models (10). Studies have shown that endothelial cells alter their morphology, growth rate and metabolism in response to fluid shear stress (Ueda et al., 2004; Chen et al., 1999; reviewed in Davies 1995). Moreover, shear stress profiles (e.g. pulsatile flow vs. oscillatory flow) differential affect cell function (16), (17), (18). For example, oscillatory flow characterized by low mean shear stress and high shear stress gradient was found to up-regulate P-selectin, ICAM-1 and MCP-1 mRNA levels in bovine aortic endothelial cells (BAEC) and promote monocyte adhesion when compared to pulsatile flow (17). 23 1. Cellular Mechanosensors There is a growing list of mechanosensory domains and mediators of mechanotransduction that are available to cells (Figure 1-2), including (5), (14): (I) Cell Membrane (e.g. Stretch-Activated Channels, membrane receptors, and caveolae), (II) Cell-matrix adhesions (e.g. Integrin, Focal Adhesion Complexes), (III) Cell-cell adhesion (e.g. Cadherins), (IV) Glycocalyx, primary cilium, streocilia), components (V) Cytoskeleton, (VI) Surface processes Cell Nucleus and (VII) (e.g. ECM (e.g. fibronectin). Furthermore there are interactions between these different mechanosensors, for example shear-stress evokes cross-talk between integrins, ion channels and Gproteins in endothelial cells (19). 24 o0 Calcium and other ions e0 Cell-signalling molecules and transcription factors 00 Extracellular ligands Fluid shear stress Stretch-activated ion channels complex ECM |Cell-surface receptor Tissue strain Nature Reviews Molecular Cell Biology Figure 1-2: Cellular Mechanotransduction Image and text reproduced from Jaalouk and Lammerding Nature Reviews Molecular Cell Biology (5). Several biological components, not mutually exclusive, have been proposed to act as cellular mechanosensors and are schematically depicted in a representative cell (see figure). a I Stretch-activated ion channels. b I In endothelial cell, the glycocalyx. c I Cell-cell junctional receptors. d I Extracellular matrix (ECM)-cell focal adhesions. e I Force-induced unfolding of ECM protein. f I Intracellular strain induced conformational change in cytoskeletal elements. g I Nucleus. h I Compression of intercellular space alter effective concentration of autocrine and paracrine signalling molecules. 25 1.1.1 Implication of Endothelial Cells in Disease Pathogenesis Among the top 5 leading causes of death in the U.S. for 2009 are diseases of the heart, malignant neoplasms (cancer) and cerebrovascular diseases (20). For vascular-related diseases endothelial dysfunction is reportedly a common denominator (21). Endothelial cells are not a passive barrier between blood/lymph/AH and tissues, in contrast they perform many vital functional roles important for tissue health and repair and maintaining vascular homeostasis (10). For example, nitric oxide (NO) produced by vascular endothelial cells promotes vasodilation and inhibits inflammation, thrombosis and smooth muscle cell proliferation all important defensive action against atherosclerosis (Figure 1-3A) (22) a major risk factor for heart attacks, strokes and peripheral vascular disease. On the other hand, the primary cause of death from malignant neoplasms is metastasis (Figure 1-3B)- the process by which cancer cells spread throughout the body to establish new colonies in remote organs and tissues via three main routes of dissemination which includes lymphatic vessels, blood vessels and serosal surfaces (23). It is widely accepted that endothelial cells promote metastasis formation by enhancing the growth of primary tumor via angiogenesis (discussed in details later) or by facilitating tumor cell invasion by honing tumor cells to blood and lymphatic vessels (24). 26 A Endothelial cells and Atherosclerosis: Roles in Endothelial cells and Metastatic Cancer: Roles in Leukocyte Adhesion and Plaque Development Extravasation, Intravasation and Angiogenesis FAWOt BMmgtiond * ~ 4 Nopowradlon ~ Eftam~awn-Cwcueatoo Gr-ng metasta Jackson, Shaun P. 2011. Nature Medicine 17 (11) 1423-1436 Bacac M. Stamenkovic I.2008. AR Annu. Rev. Pathol.Mech. Dis. 3:221-47 Figure 1-3: Role of Endothelial Cells in Atherosclerosis and Metastatic Cancer Involvement of endothelial cells in (A) atherosclerosis (image reproduced from Jackson 2011 (25)) and (B) metastasis (image reproduced from Bacac 2008 (23)). b. Motivation for in vitro model systems Ross G. Harrison, one of the pioneers of cell culture models wrote in 1907, "the immediate objective of the following experiment was to obtain a method by which the end of a growing nerve could be brought under direct observation while alive, in order that a correct conception might be had regarding what takes place as the nerve fiber extends during embryonic development from the nerve center out to the periphery." Like many scientific pursuits his work was motivated by an 27 existing debate - regarding the growth and development of the nervous system - and would only be settled by irrefutable experimental findings. A glimpse of the process would reveal clues to underlying mechanisms which could prove or disprove his theory. The potential for new scientific breakthrough was quickly realized an in the years to follow isolated cells and tissue were used as model systems to investigate processes relating to health and disease. The ultimate challenge lies in replicating the native cell/tissue environment ex vivo. Moreover, to improve human health, the translation of basic research from the bench top to the clinics or bedside is a necessary yet an enormous challenge. For example, in the area of drug discovery only a few agents survive the many hurdles from conception to the realization of clinically useful therapies. In several instances, this repeat failure has been attributed to limitations in model systems. Physiologically relevant and well controlled models that mimic the in vivo microenvironment would enable better understanding and effective evaluation of new therapies. In vivo models are physiologically relevant but inherently complex, hard to control and difficult to decouple, potentially confounding results. In vitro models can provide more control but in most cases lack physiological relevance. For example, in a majority of early endothelial functional studies cells are cultured on noncompliant substrates which are coated with thin layers of adhesion proteins. While very valuable for elucidating certain aspects, for example the mechanism of mechanotransduction, in vivo, the endothelium interacts with a viscoelastic three dimensional substrate-basement membrane. Consequently, continued improvements on in vitro models are necessary to more closely replicate the native tissue/cell microenvironment. 28 THE HISTORY OF CELL CULTURE ArnsToTLE liEOPHRM~US sPortANTors - PLANT Figure 1-4: History of cell culture Image and text reproduced from Witkowski 1979 (26). A diagram drawn up by P. R. White to illustrate the history of tissue culture and the relationships between different workers in the field. It is divided vertically in areas of interest, with "animal" subdivided into "materials and methods" (left) and "nutrients" (right). 29 c. Microfabrication Biological Sciences * (* some of the material in this section has been submitted as a part of a book chapter) i. Advent of Microfluidics Microfluidics emerged as a multidisciplinary research field since its inception at Stanford University where the technology was first applied to the fabrication of gas chromatographic air analyzers (27) and for designing the nozzle component for the first inkjet printers by IBM (28). The foundation for microfluidic fabrication was laid by the microelectronics industry that developed fabrication techniques for creating high-resolution features in microelectronic components. Early microfluidic systems were fabricated in silicon or glass using standard photolithography (other lithographic techniques include electron lithography, X-ray lithography, ion lithography) and chemical etching methods (29). In recent years, there has been a shift towards elastomeric materials that permits rapid prototyping of microfluidic systems, discussed further in section 3 and illustrated in Figure 1-5 (30), (31). Current applications for microfluidic devices span multiple disciplines, with applications in biotechnology and biochemical processing (32); clinical and forensic analysis (33); combinatorial chemistry (34); systems biology (35); tissue engineering (36), (37), cell-based biosensors (38); diagnostics and personalized medicine (39); and embryo production (40). The biology community has greatly benefited from these advances, and progress in microfabrication technologies has paved the way for new approaches to manipulate and observe cells in microenvironments that more closely mimic in vivo conditions. Microfluidic-based cell culture systems provide new capabilities 30 for continuous monitoring of dynamic processes, such as angiogenesis, at high spatial and temporal resolution in a controlled microenvironment (41). (a) Silicon wafer (b) The coated SU-8 photoresist uv uv uv (c) ka*a Silicon wafer is placed on a spin coater. SU-8 photoresist is coated onto silicon wafer. For the patterning, SU-8 photoresist is exposed with UV. Petri dish -&-(g) (e) niastei nnold Patterned SU-8 @ After baking and development, SU-8 photoresist is developed. (h) IMF* SU-8 master mold is placed in Petri dish. (d) (d PDMS is poured onto master mold in the Petri dish Iq After curing, the PDMS slab is peeled off from the master molds. 0I ~,S[ ~icic Punched PDMS slab is bonded by air plasma treatment. Figure 1-5: Schematic of Microfluidic Device Fabrication: The microfluidic chip is fabricated using an SU-8 fabrication method (a-d) and replica molding (gh). (a) A silicon wafer is placed on a spin-coater to achieve the desired SU-8 resist film thickness. (b) SU-8 photoresist is coated onto the silicon wafer. (c) For patterning, the SU 8 photoresist on the silicon wafer is exposed to conventional UV (350-400 nm) radiation using a photomask. (d) After baking and development, the SU-8 resist is developed with SU-8 developer, and an SU-8 master mold is made. (e) The SU-8 master mold is placed in a large Petri dish for PDMS preparation. (f) PDMS is poured onto the master mold in the Petri dish. (g) After curing, the PDMS replica is peeled away from the master mold. (h) For bonding, the PDMS slabs are bonded with a cover slip by air plasma treatment. ii. Microfluidic devices for angiogenesis 1. Motivation Angiogenesis is important in health and disease. During embryonic development, for example, angiogenesis facilitates the expansion of the primitive vascular plexus, thus meeting the demands 31 for oxygen and nutrient requirements during embryogenesis. In healthy adults physiologic angiogenesis occurs during endometrial and placental formation, wound granulation after injury and hair follicle vascularization (42). Furthermore, angiogenesis has been implicated in and directly linked to the pathogenesis of a growing list of diseases (43), (44). Given the far-reaching impact, it is not surprising that the radical theory of angiogenesis proposed by Folkman during the 1970's has spawned an entirely new field of both basic and translational research. Moreover, there is considerable interest in understanding how to modulate vascularization and insights from angiogenesis are used to design new therapies for cardiovascular diseases (45) or more boldly, the in vitro creation of vascularized tissues or organs by implementing tissue engineering approaches for replacement therapies. 2. The Biology of Angiogenesis a. Angiogenesis in development Although the processes by which microvascular networks form are described in detail in other chapters, a brief background is useful as motivation for in vitro studies in microfluidics to follow. The embryonic vasculature is formed by two distinct processes, vasculogenesis - the de novo vessel formation from endothelial progenitors, angioblasts- and angiogenesis - the expansion of a preexisting vascular network which occurs during the later stages of development. Interestingly, these two processes of vascularization occur in distinct embryonic regions which are defined by the three germ layers: ectoderm, mesoderm and endoderm. Vasculogenesis, which gives rise to the primitive vascular plexus, occurs splanchnopleural in tissue of a splanchnopleural mesoderm), while angiogenesis origin predominantly (includes occurs endoderm in tissues and of a somatopleural origin (ectoderm and somatopleural mesoderm) (46). 32 b. The pathways of angiogenic sprouting and network formation Angiogenesis is a complex, multi-step process involving a series of well delineated steps. Once endothelial cells have acquired an angiogenic phenotype, the following processes occur: (a) protease production increases facilitating degradation of basement membrane; (b) directional cues initiate migration towards the angiogenic stimulus; (c) proliferation; (d) tube formation; and (e) maturation. The regulatory chemical signals produced at the onset of and during angiogenesis originate from many cell types including tumor cells, fibroblast, keratinocytes and macrophages. Up-regulation of pro-angiogenic factors and the simultaneous down-regulation of endogenous angiogenesis inhibitors are normally triggered when the tissue environment becomes hypoxic (47), (48) or inflammatory (49). Oxygen sensing is important for many biological processes including development, pH homeostasis and angiogenesis (50). Critical molecular mediators of hypoxia and cellular oxygensignaling pathways, hypoxia-inducible factor (HIFs), are known to directly activate the expression of such pro-angiogenic factors as VEGF, PDGF-B, Ang-1, Ang-2 and receptors VEGFR-1, VEGFR-2 and Tie-2 (48), (51), (see also Table 1-2). In particular, hypoxia induces a dramatic increase in VEGF messenger RNA levels (52). VEGF is essential for embryonic vasculogenesis and angiogenesis, as demonstrated by the observation that VEGF gene inactivation is lethal (53), (54). In vitro, VEGF promotes EC proliferation, migration, differentiation and capillary formation. It is also widely appreciated that tumor cells secrete angiogenesis-related proteins under hypoxic conditions (55), (56). Recently, a linear correlation was established between hypoxic growth conditions and the expression levels of eight angiogenesis-related proteins including VEGF, IL-8, PDGF-AA, PDGFAA/BB, TGF-P1, TGF-p2, EGF, and IP-10 (57). In addition, stromal cells promote angiogenesis (58), (59) and also enhance vascular maturation (60). 33 Inflammatory cytokines and chemokines represent another group of signaling molecules with critical roles in angiogenesis regulation during tumor growth, wound healing and ischemia (49). Furthermore, chronic inflammatory conditions such as rheumatoid arthritis (RA) are considered as angiogenic diseases, as the excessive neovascularization contributes to their pathogenesis.. Pro-inflammatory factors such as TNF-a, IL-8/CXCL8 and SDF-1/CXCL12 are known angiogenic mediators while IL-4, LIF and PF4/CXCL4 exert an inhibitory role (61), (62). For extensive reviews on additional topics related to angiogenesis in inflammation see (63). Positive/ Negative Soluble Ligands/ Receptors Impact on Endothelial Cells Notes VEGF Chemotactic (64) EC migration, proliferation, apoptosis, differentiation Targets: EC specific mitogen Sources: Smooth muscle cells, keratinocytes, macrophages, tumor cells Gene Regulation: Oxygen tension, Regulators Pro- VEGFR-1 VEGFR-2 1/KDR) (Flt-1) (Flk- anti- angiogenic Factors growth factor inflammatory Angiopoietin-1 in Tie-2 formation, survival in vivo: Maturation, recruitment of mural cells. vitro: EC migration, tube (TFG-alpah,PDGF), cytokines (IL-1- alpha,IL-6); Hormones (TSH, ACTH); oncogenes (ras) CS (66) signal FGF Chemokinetic Synergistically with VEGF. bFGF binds FGFR-1 T EC proliferation Broad spectrum, multiple cell types aFGF PDGF-BB PDGFR-cta (64) T EC migration, pretreatment PDGFR-sp PDGFR-ap IL-8/CXCL8 Chemotactic CXCR1 T EC proliferation CXCR2 T EC migration require bFGF Targets: VSMCs/pericytes mitogen and chemoattractant. bFGF sensitizes EC (67) ELR-positive chemokine (68) T MMP Stromal cell-derived factor 1 production Chemotactic in vivo; dermal angiogenesis SDF-1/CXCL12 recruitment of EPCs (69) CXCR4 TGF-O Induces EC apoptosis T bFGF (70) expression, T VEGF synthesis Hepatocyte growth factor/scatter factor HGF/SF T EC proliferation I EC migration Down-regulate TSP-1 in tumor cells (71) Met 34 Antiangiogenic Factors Angiostatin Endostatin Inhibit EC proliferation Inhibit EC proliferation Interleukins (IL-4, IL-13) Platelet factor-4 (PF4) CXCR3-B Thrombospondin-1 TSP-1 Vasostatin Inhibit Inhibit Inhibit Inhibit 38kDa plasminogen fragment (72) 20kDa C-terminal collagen XVIII fragment (73) Cytokine (74), (75) EC migration tube formation EC proliferation EC migration ELR-negative chemokine (76) Inhibit EC migration (77) Inhibit EC proliferation Fragment of calreticulin (78) Table 1-2: Pro- and anti- Angiogenesis Factors A partial list of biochemical factor that are known to be pro- and anti- angiogenesis. c. Angiogenesis in disease processes In healthy adults, endothelial cells remain virtually quiescent - the result of a strict balance between pro- and anti-angiogenic factors. The transition from a quiescent to an angiogenic phenotype occurs when this balance is disrupted and pro-angiogenic factors dominate. While physiologic angiogenesis occurs in a tightly regulated fashion, deregulation of this process contributes to the progression of a variety of diseases (Table 1-3). The pathogenesis of the diseases may be characterized by either an excessive or insufficient growth of blood vessels. Interestingly, while the cellular and molecular regulator of normal and pathological angiogenesis have much in common, the latter is characterized by uncontrolled, aberrant vascular growth (79). For example, VEGF signaling plays a pivotal role in normal and tumor angiogenesis, however tumor vasculature is chaotic and structurally abnormal (79). 35 Angiogenesis Diseases Notes/References Excessive/Abnormal Angiogenesis Cancer Hemangiomas Retinopathies: Proliferative ischemic retinopathies: proliferative diabetic retinopathy (PDR), retinopathy of prematurity (ROP). Age-related macular degeneration Blindness, excessive pre-retinal blood vessel growth leading to retinal detachment. (80) (AMD). Retinoblastoma Atherosclerosis Inflammatory rheumatic diseases: Inflammatory disease. (81), (82), (83) (84) Rheumatoid arthritis (RA) Psoriasis Chronic Inflammatory disease of skin and small Asthma Endometriosis Insufficient Angiogenesis Chronic liver disease: portal hypertension (PH), fibrosis, cirrhosis, non-alcoholic steatohepatitis (NASH), hepatocellular carcinoma Coronary artery disease Ischemic Stroke Chronic wounds Inflammatory rheumatic diseases: Systemic sclerosis or systemic joints. (85) Chronic Inflammatory disease: (86) Gynecological disorder, proliferation of endometrial glands and stroma outside uterine cavity. (87) (88) (89) (90) (91) (84) scleroderma (SSc) Table 1-3: Angiogenesis related diseases A partial list of diseases characterized by either excessive or insufficient angiogenesis. d. Angiogenesis in Tissue Repair During tissue repair, for example in wound healing, angiogenesis is necessary for generating a functional granulated tissue. In healthy individuals, this phase of wound repair progresses naturally. However in certain situations, for example in diabetes, growth factor deficiencies, 36 impaired keratinocyte and fibroblast migration and proliferation, and accumulation of antiangiogenic glycation end-products in their tissues impair the angiogenic response and subsequent tissue repair (92). Furthermore, tissue damage is inevitable in diseases characterized by inadequate vascular perfusion and interventions to correct vascular insufficiency are required. One approach, therapeutic angiogenesis, has been extensively explored. Therapeutic angiogenesis is the delivery of exogenous factors (e.g. small molecules, genes or cells) or the use of mechanical devices to stimulate neovascularization, restore form and function to tissues (42)]. Growth factor therapy with recombinant proteins, gene therapy using non-viral (e.g. plasmid DNA, liposomes, nanoparticles) or viral (e.g. recombinant retrovirus, adenovirus, adeno-associated virus, Herpes simplex virus type-1) techniques to deliver pro-angiogenic factors, tissue-engineered products, hyperbaric oxygen and negative pressure wound therapy are current avenues for stimulating angiogenesis (93), (42). Recombinant growth factors including VEGF, bFGF and PDGF-BB have been used in animal models of chronic limb ischemia (94), (95). More recently, using plasmid-based gene delivery systems, local intramuscular administration of FGF-1 was shown to be safe and improved amputation-free survival in patients with critical limb ischemia (45). Hyperbaric oxygen therapy (HBOT), the intermittent exposure of patients to 100% oxygen at pressures above 1 atmosphere, has been known to promote angiogenesis and collagen synthesis but the underlying mechanisms remain unclear (96). Another strategy, negative pressure therapy has been used extensively in clinical management of wounds (97). The underlying mechanism by which topical negative pressure stimulates angiogenesis has been investigated using in vitro methods and linked to increased endothelial cell migration and proliferation (98), (99). Angiogenesis is clearly a complex process requiring the coordination of multiple cell types and integration of a host of chemical and mechanical microenvironmental signals. Despite these 37 enormous challenges small successes provide a map for future directions and motivation for further pursuits in the application of angiogenesis principles for tissue repair and regeneration. 3. Traditional in vitro and in vivo models of angiogenesis Over time, investigators have implemented different types of in vivo and in vitro models in an effort to recapitulate natural angiogenesis. The requirement for more affordable, reliable, reproducible and well-characterized model systems has contributed to vast progress over the years. Despite these advances, there still remain challenges with either approach, evident by the limited success in the translation of basic research to the clinic or bedside. Nevertheless, the research community is aware of these shortcomings, and has identified the extensive criteria that must be met (100) for successfully recreating angiogenesis in the lab. Thus, the field continues to evolve, as newer models are developed and older ones are refined. In vivo systems: Three main types of in vivo angiogenesis assay have been described; (1) microcirculatory preparations in chick embryo and rodents; (2) recruitment of vessels by biocompatible polymer matrix implants; and excision of vascularized tissues (see (100) for an extensive review]. One of the earliest in vivo angiogenesis models dates back to the late 1930s, where Ide et al. (101) demonstrated the vascularization of an implant of Brown-Pearce epitheliaoma using the transparent rabbit ear window developed by Sandison (102). Since then, several other in vivo assays have been developed including cranial windows, chick chorioallantoic membrane (CAM), corneal micropocket assays among others (100). In vitro systems: In vitro assays traditionally take what could be viewed as a minimalistic approach; the angiogenesis cascade is decomposed and investigated as the sum of its individual steps, namely migration, proliferation and tube formation. Two research groups, Jaffe et al. and 38 Gimbrone et al. were among the first to report of the successful long-term culture of endothelial cells in vitro (103), (104) . However, it was not until methods for the successful culture and clonal expansion of endothelial cells (ECs) in vitro (105) were developed that the first in vitro angiogenesis assay was established. In 1980, Folkman and Haudenschild demonstrated that cloned capillary ECs cultured on a gelatinized Cuprak dish in tumour-conditioned medium could initiate angiogenesis (106). Since then a variety of in vitro models have been developed in an attempt to simulate and analyze the process of neovascularization. These in vitro assays can be broadly classified as two-dimensional (2D) or three-dimensional (3D). In 2D models, cells are plated on culture surfaces that are coated with thin layers of adhesion proteins whereas in 3D models cells are cultured on or in 3D matrices. In 3D cultures, cells are able to invade or migrate within the matrix, which better recapitulates the 3D nature of the in vivo microenvironment. A common theme involves the culture of ECs in the presence of different extracellular matrix components and angiogenic factors. Although these models have been extremely valuable for understanding several aspects of the cellular and molecular mechanisms operative in angiogenesis, they lack the capability of including other important factors such as chemical gradients, surface shear stress and interstitial flows, as discussed in more detail later. Physiologically relevant and well-controlled models that better mimic normal and pathological angiogenesis would narrow the gap between bench-top discoveries and clinical applications. In vivo models have physiological relevance yet inherently lack a high level of control. On the other hand, in vitro models have the potential for greater degree of control, yet lack critical elements of the in vivo microenvironment. There remains much room for improvement, and this has motivated many to explore microfluidic methods in the search for greater in vivo relevance in an in vitro model. 39 4. MicrofluidicAngiogenesisAssays Recently, the number of microfluidic-based 3D angiogenesis assays has increased (Figure 1-6). Advances in microfluidic technologies have permitted new approaches for manipulating and monitoring cells while allowing for the controlled simulation of factors known to influence vascular sprouting in vivo. (For additional details see chapter 2) A Vickerman et al., Lab chip 2008 - fluid environment Barkefors et al., Lab chip 2009 3D hydrogel - lia nnels EC Sprout PDMS a 3D Matrix Sprout in Microfluidic System N Chung et al., Lab Chip 2009 E Shamloo and Heilshorn Lab chip 2010 Chung et al., Advance Material 2009 OOWWrs-n Figure 1-6: Microfluidic-based Angiogenesis Assays Examples of published microfluidic-based platforms used in different angiogenesis studies (41), (107), (108), (109) and (110). 40 iii. Microfluidics for tissue engineering applications There is an increasing interest in understanding how to modulate vascularization in vitro for tissue engineering applications. The development of biological substitutes that restore, maintain and improve tissue function (111) holds promise as a solution to tissue failure and end-stage organ failure. One of the major challenges of engineering larger tissue, however, is the need to create a microvascular perfusion network to the newly generated or implanted tissue (112), (113), (114). The microvasculature serves to supply oxygen and nutrients to the target tissue as well as to remove metabolic waste. Tissues in the body overcome issues of oxygen and nutrient distribution by being in close proximity ~ 100 pim of capillary beds. There is currently active research to develop methods to engineer microvascular network with diameters in the range of small arterioles (100 [tm) and capillaries (10pm) or tissue-engineered construct with an inherent vasculature which would serve to connect to host vascular system upon transplantation (115), (113), (116), (117). In this regard, knowledge gained from angiogenesis research can be used to develop new strategies for vascular tissue engineering applications. d. Thesis Aims and Overview Thesis Aims Aim 1: Microfluidic-based 3D Cell Culture Platform Design and Fabrication. To design and fabricate an in vitro microfluidic system that: serves as a microfabricated substrate for 2D and 3D seeding of cells in biomaterials; permits the delivery of controlled flow of biological fluids; pressure gradients across biological scaffold; growth factor concentration gradients and facilitates real time monitoring of cells' response to their microenvironment. 41 Aim 1b: Vascularization of Biomaterials in a Microfluidic-based Cell Culture Platform. To demonstrate feasibility of microfluidic platform for the growth of vascular networks using synthetic or biological-derived scaffolds. Aim 2: Biophysical Regulation of Angiogenesis. To investigate potential mechanisms for basal-toapical transendothelial flow induced angiogenesis Aim 3: A 3D in vitro model for aqueous humor outflow: Transport across the inner wall endothelium. To develop a 3D in vitro model for aqueous humor outflow dynamics to characterize giant-vacuole formation and visualize fluid transport pathway across Schlemm's canal endothelial cells in response to basal-to-apical flow. Thesis Overview This thesis utilizes microfabrication technology to develop microfluidic-based platforms and methods for facilitating three-dimensional (3D) culture of cells/tissue with control of physical and chemical microenvironment. The main focus lays in the development and subsequent application for different biological assays motivated by research relating to vascular tissue engineering, glaucoma and cancer in the context of but not limited to endothelial cells. CHAPTER TWO describes the development of a novel multiparameter control microfluidic-based 3D cell culture platform with the flexibility to control both the biochemical and biophysical microenvironment. The system permits 2D or 3D culture of cells on/in biologically derived (e.g. collagen, Matrige TM ) or synthetic hydrogel scaffolds (e.g. RAD16-I) and allow for controlled flow rates, pressure and concentration gradients while directly visualizing cellular response. In addition 42 to the real-time and post-fixation imaging using optical microscopy, methods were developed to extend post-fixation analysis to transmission electron microscopy (TEM). The platform was subsequently used to demonstrate for the first time, the angiogenesis in a microfluidics-based 3D cell culture system. With proof-of-concept experiments we demonstrated that the cellular dynamics during biochemically induced sprouting angiogenesis can be observed with great details. Furthermore, of particular relevance to tissue engineering community, we demonstrated that endothelial cells when cultured for several days can assemble into vascular networks with open, perfusable lumen structures. Results from work with different collaborators which further demonstrates the broad applicability of the platform developed in this thesis are presented in APPENDIX I of CHAPTER TWO. The vascularization potential of a class of synthetic peptide hydrogels was also examined within the microfluidic-based 3D cell-culture device, APPENDIX II of CHAPTER TWO. Experiments with synthetic peptides (RAD16I and RAD16II) for the endothelial sprouting assay demonstrated that the angiogenic response, in particular, the degree of invasion and sprout formation, was very low compared to the widely used rat tail type I collagen gels. However, functionalized peptides PRG (RGD binding motif) and KLT (mimics VEGF helix region, activate VEGF receptor) when added to RAD161 promoted HMVEC invasion and the formation of capillary-like structures. CHAPTER THREE further demonstrates broad applicability of the microfluidic-based 3D cell culture platform developed in CHAPTER TWO. The application of the microfluidic-based 3D cell culture platform for a glaucoma relevant assay is established. In this chapter, we report the development of the first in vitro cell-based 3D aqueous humor (AH) outflow model and subsequent proof-of- 43 concept experiments demonstrating its capability for studying the role of the inner wall endothelium in regulating AH outflow dynamics. In, CHAPTER FOUR the potential mechanisms by which basal-to-apical transendothelial flow promote sprouting angiogenesis is examined. This work was partially motivated by the observation that in vivo in tumor angiogenesis new vascular sprouts emerge predominantly from the low pressure venous circulation. A proposed model for basal-to-apical flow induced angiogenesis was presented based on evidence from protein localization, phosphorylation and pharmacological studies. Finally, concluding remarks, summary of thesis contribution and future research directions are presented in CHAPTER FIVE. 44 Chapter 2: Microfluidic-based 3D cell culture platforms for biological studies** **Material in this chapter was originally published in a peer-review journal: Vickerman et al, "Design, fabrication and implementation of a novel multiparameter control microfluidic platform for threedimensional cell culture and real-time imaging". Lab Chip, 2008, 8, 1468-1477. (selected Top 10 Articlesfor Lab on a Chip in September (with 779 access), [Cited by 73 - 03/2012] a. Chapter Abstract New and more biologically relevant in vitro models are needed for use in drug development, regenerative medicine, and fundamental scientific investigation. While the importance of the extracellular microenvironment is clear, the ability to investigate the effects of physiologically relevant biophysical and biochemical factors is restricted in traditional cell culture platforms. Moreover, the versatility for multi-parameter manipulation, on a single platform, with the optical resolution to monitor the dynamics of individual cells or small population is lacking. Here we introduce a microfluidic platform for 3D cell culture in biologically derived or synthetic hydrogels with the capability to monitor cellular dynamics in response to changes in their microenvironment. Direct scaffold microinjection, was employed to incorporate 3D matrices into microfluidic devices. Our system geometry permits a unique window for studying directional migration, e.g. sprouting angiogenesis, since sprouts grow predominantly in the microscopic viewing plane. In this study, we demonstrate the ability to generate chemical gradients, surface shear, interstitial flow, and image cells in situ. Three different capillary morphogenesis assays are demonstrated. Human adult dermal microvascular endothelial cells (HMVEC-ad) were maintained in culture for up to 7 days during which they formed open lumen-like structures which was confirmed with confocal microscopy and by perfusion with florescent microspheres. In the sprouting assay, time-lapse movies revealed cellular mechanisms and dynamics (filopodial projection/retraction, directional 45 migration, cell division and lumen formation) during tip-cell invasion of underlying 3D matrix and subsequent lumen formation. b. Introduction Progress in microfabrication technologies has paved the way for new approaches to manipulate and monitor cells in an environment that closely mimics in vivo conditions. The in vivo microenvironment is characterized by short distances to nutrient flow, a 3-dimensional (3D) scaffold, and the presence of multiple cell types in proper spatial relationship. These features are readily achievable by current microfabrication techniques and can be combined with appropriate cell culture protocols. The major advantages of micro-scale cell culture systems or microfluidic bioreactors are their ability to use small quantities of cells and reagents, precise control of spatial and temporal environment and high resolution visualization of cellular events in real-time. Microfluidic devices of varying levels of complexity are rapidly gaining popularity within the cell biology community (38), (118), (119), (120). Most are 2D in the sense that the cells are plated on top of a coated substrate. Patterned substrates have been studied as well as surfaces with topological variations (121), (122), (123). These are useful for studying cell confinement, alignment and cell-cell cell-surface or receptor-ligand interactions. Researchers now generally agree, however, that many critical biological subtleties may be missed in 2D cell culture models (124), (125), (126) and are seeking alternative approaches that incorporate a 3D gel or matrix. The in vivo microenvironment is an integration of a complex array of global as well as local stimuli and interactions that can be categorized as either biochemical or biophysical in nature. 46 Biochemical factors include the steady or time-dependent presentation of soluble factors as well as functionalization of the 3D scaffold the cells reside either within or on top of. Some of the known biophysical factors are the stiffness, density and pore size of the scaffold material, and features related to flow, either surface shear stress or interstitial flow around the cells in the matrix or through a surface layer of, say, endothelial or epithelial cells. While the importance of the extracellular microenvironment is clear, the ability to investigate the effects of physiologically relevant biophysical and biochemical factors is restricted in existing 3D cell culture platforms. Current 3D in vitro models range from traditional multi-well plate cultures (127), (128) to macrofluidic systems (129), (130), (131). Most are limited in the scope of biochemical or biophysical factors that can be controlled, and often cannot be imaged at high resolution during the course of an experiment. Better resolution has been achieved in microscale systems, for example, 3D gel microscope slide assays or cells cultured on 2D microfluidic channels, but with an obvious compromise in the range of parameter control and/or, physiological relevance. Recent advances in 3D microfluidic systems include the works of Koh and Pishko who use photo-patterning techniques to fabricate cell-containing hydrogel microstructures inside microfluidic channels (132) and Desai and Tan who took a microfluidic multilayer patterning approach to created biomimetic 3D structures (133). Paguirigan and Beebe fabricated a novel microfluidic device from gelatin which was used to culture mammary gland epithelial cell which organized to form a more in vivo like 3-dimesional structures as opposed to cell culture on tissue culture plastic (134). In this study, we develop a novel microfluidic bioreactor (ptFBR) system for 3D cell culture and demonstrate its capability for studying capillary morphogenesis. Capillary morphogenesis is an important process that occurs in both physiological (e.g. wound healing and development) and 47 pathological (e.g. tumor growth) conditions. In addition, one of the major challenges facing the field of tissue engineering is creating highly vascularized tissue with a functional vascular network. Each of these processes has been extensively studied and shown to be regulated by a wide spectrum of biophysical factors and sequenced biochemical cues. Due to system constraints, however, each individual study typically focuses on the effects of one or a small number of factors, making it difficult to comprehend their potential interactions. Moreover, since capillary sprouting occurs perpendicular to an existing monolayer, it is advantageous to have the capability to view the monolayer from the side, so that capillary growth occurs in the viewing plane. To provide greater flexibility and a higher degree of control, we have developed an in vitro ptFBR designed to permit: (1) 3D cell culture, (2) the delivery of controlled time-dependent delivery of biochemical agents, uniformly or with a spatial gradient, (3) the generation of pressure gradients and flows, both surface and interstitial, (4) advantageous viewing angle perpendicular to a formed monolayer and (5) real-time monitoring of cells in response to changes in their microenvironment. Here we demonstrate the capability of our system for studying capillary morphogenesis; however it can be used in the study of other cell types either as single cultures or co-cultures. We know of no in vitro angiogenesis models and microfluidic systems which couple microfabricated technology with the basic concepts of traditional 3D in vitro angiogenesis models and that are geared towards promoting and studying capillary morphogenesis in response the relevant biochemical and biophysical features present in vivo. 48 c. Material and Methods i. Microfluidic Bioreactor Design In order to satisfy these stated design criteria, a [tFD was created (Figure 2-1a) consisting of two parallel microfluidic channels for delivering cell culture medium and a central "gel cage" with a micro-pillar array for housing cell-seeded scaffolds. One primary objective was to facilitate the incorporation of most commonly used injectable cell culture scaffolds (hydrogels), which may be biologically derived (collagen gels or MatrigelT M ) or synthetic (self-assembling peptide gels) (135). Gel cage geometry was optimized to permit the use of a range of hydrogel concentrations, with the posts providing physical support to prevent the fracture of brittle gels and provide stability for soft gels. The microfluidic network and gel cage were cast in PDMS which was bonded to glass after loading the scaffold (see details below). With the scaffold in place the two media channels are isolated from each other, communicating only through the gel containing region. This permits the establishment of gradients in both pressure and chemotactic factors across the gel. Either static or dynamic cultures can be established by integration with macro-scale plumbing. In dynamic cultures, the bioreactor chip is connected to an external flow circuit which allows the control of both surface shear stress and interstitial flow perpendicular to a cultured monolayer or past cells suspended in the gel. The external platform is equipped with two isolated media reservoirs having adjustable hydrostatic heads (producing a pressure gradient across the gel) at the inlet, two-way valves (to isolate the system when necessary) and outlet connectors to a programmable push/pull syringe pump (PHD 2000, Harvard Apparatus). Pressure gradients can also be generated by connecting reservoirs directly to the PDMS wafer. The entire ptFBR platform was designed to be 49 small enough to fit on conventional microscope stage to allow real-time monitoring of cells over the course of an experiment. ii. Device Fabrication and Surface Modification The design of the microfluidic network was created in AutoCAD (Autodesk, San Rafael, CA) with the dimensions of the microfluidic channels, gel "cage" and micro-pillars as provided in table 1. A transparency mask was created from the CAD file with a minimum geometric feature size of approximately 100 ptm and printed by a high-resolution printer (PageWorks, MA). This transparency mask was used in photolithography of SU-8 photoresist to create a silicon wafer master. Microfluidic devices were made by replica molding (31) polydimethylsiloxane (PDMS) (Dow Corning, USA) and curing the degassed elastomer mix (10:1, base: curing agent) against the silicon master in an 80 'C oven for 2 hours. Polymerized PDMS wafers were peeled off the silicon master, individual bioreactor wafers (35 mm diameter, 0.8-1cm height) cut out and inlets and outlets cored down to microfluidic channels using a sharpened flat-ended 16 gauge needle. Prior to cell culture PDMS wafers were cleaned and sterilized at 120 'C for 20 minutes in a wet cycle followed by a dry cycle at 120 'C for 35 minutes (20 min sterilization/ 15min dry). Next, the PDMS surface was rendered hydrophilic by exposure to air plasma to facilitate scaffold loading (detailed below). Briefly, sterilized wafers were placed on trays in plasma cleaner (Harrick, CA) chamber (pattern side up). A pump down cycle (- 2 minutes) was initiated followed by irradiation for 2 minutes with pink plasma. Surface treated wafers were stored in sterile container and used within 0.5 - 2 hrs following plasma treatment. iii. Scaffold Loading Microinjection System and Device Assembly 50 A microinjection station was created to load the cell culture scaffold (sub ptL volumes) into the device under aseptic conditions (Figure 2-1c). The system components included a manual micromanipulator (MN-151 Joystick Micromanipulator with H-7 Pipette Holder, NARISHIGE, NY), microliter syringe (Hamilton, 62RNR, 2.5 pL SYR, 22s/2"/3, VWR), digital microscope (Big Blue QX5, COMPUVISOR.COM, TX) (all housed in a laminar flow hood) and a monitor for visual guidance. The MN-151 joystick feature provided control of micro-scale adjustment in the XY plane with additional coarse adjustments along the X, Y and Z axes. Scaffold Microinjection. Sterilized PDMS wafers with their surfaces rendered hydrophilic as described above are positioned on the microscope stage (patterned surface upward) with the "gel cage" in clear view on the video monitor (Figure 2-1b). The tip of the microliter syringe (pre-loaded with pre-polymer solution), attached to micromanipulator, is positioned a few microns above of the "gel cage" and a small droplet of the pre-polymer solution is created manually and lowered until the droplet first makes contact with the micro-pillars. Droplet size is controlled such that its diameter is approximately equal to half the width of the "gel cage". Small droplets are created just above the gel cage, lowered and dispensed; this process is repeated until the gel cage is full. Scaffold Loading and Device Assembly. Gel pre-polymer solution (collagen type I, rat tail in these experiments) is microinjected into the "gel cage" (details above); fluidic channels are sealed with a clean glass cover slip (35 mm, VWR) and secured with a mechanical clamp (dynamic cultures when connected to external platform). This is repeated for multiple wafers at a time. After scaffold injection, assembled PDMS wafers are placed in a secondary humidified container, to prevent the hydrogels from drying out. Gels are allowed to polymerize for 30 min at 371C in a humidified incubator. 51 iv. Demonstration of Concentration Gradient across Gel in pFD with and without Channel Flow Collagen gels were formed as previously described. Following polymerization, microfluidic channels were filled with cell culture media (without supplements). Gradient studies were performed under static (no flow) (Figure 2-2c) and dynamic (flow through the channels) conditions (detailed in supplementary material) with the media in one microchannel replaced by a dilute solution of fluorescent dextran (40 kDa, Invitrogen) at an initial concentration of 20 [tg ml-'. Fluorescent intensity was visualized with a Nikon TE300 microscope (Nikon Instruments Inc., NY). A series of fluorescent images (4X magnification) of the gel region were acquired with a Hamamatsu camera (Hamamatsu, Japan) using Openlab (Improvision, MA) data acquisition software and stored for further analysis. Images were processed to obtain the changes in fluorescent intensity across the gel at each time point. Image processing of time-lapse fluorescent images was performed using a custom written ImageJ (NIH public-domain image processing software) macro and MATLAB (MathWorks, MA) code. Briefly, parallel diagonal lines were drawn across the gel region from the sink to the source channel (Figure 2-2a) in each fluorescent image. A clear path was defined which avoided the PDMS micro-pillars. Pixel intensities and corresponding location from the "source" channel were recorded for these line sections. Average fluorescent intensities were calculated for pixels at the same distances from the dextran channel for all pixels across the length of the gel. At each time point a plot of the normalized average intensity profile across the gel was generated. Variations in fluorescent intensity as a function of time were plotted at fixed locations within the gel region and compared to theoretical predictions (detailed in supplementary material) obtained from a finite element model generated in FEMLAB (Comsol, USA). 52 v. Cell Culture and in vitro capillary morphogenesis models All cell cultures were maintained in a humidified incubator at 5% CO2 and 37'C. Human adult dermal microvascular endothelial cells (HMVEC-ad, LONZA, USA) were propagated in EGM-2MV media system with 5 % fetal bovine serum (LONZA formerly CAMBREX, USA). Cells were expanded on collagen-coated flasks and used at passages 6-8. 3D encapsulation in collagen gels. For 3D encapsulation studies, cells well suspended at 1 x 106 cells ml-1 in ice-cold liquid type I rat tail collagen with a final gel concentration of 2mg ml-1. Liquid collagen was prepared by adding collagen stock solution to a mixture of 1oX PBS, 1M NaOH and tissue culture grade water to obtain a 2.5mg ml-1 solution. A predetermined volume of high density cell suspension was then mixed with the collagen solution to obtain the required seeding density. The collagen/cell mixture was loaded in a microliter syringe and gels cast as previously described. Following gelation, microfluidic channels were filled with cell culture medium and incubated for 24 hours. To demonstrate the effects of biochemical factors, cells were cultured under static conditions with complete media (control) or media enriched with pro-angiogenic factors (bFGF, VEGF and PMA all at 50 ng ml-1). Cells maintained in cultures for several days in complete media or media supplemented with bFGF/VEGF/PMA cocktail which were replenished at 24 hour time points. At the end of an experiment samples were fixed, tagged with florescent markers and imaged (see details below). Surface shear stress on 3D encapsulated cells. To demonstrate the effect of biophysical stimuli, cells were subjected to small levels of surface shear stress. EC populated gels were formed and 53 culture as previously described. A pressure differential (50 Pa) was imposed across the gel by varying the difference in the height of culture media in the reservoir columns (Figure 2-2c). Endothelial cell monolayer formation. Two different cell seeding protocols were used to control the substrate on which ECs initially formed confluent monolayers, namely 2D and 3D substrate monolayer seeding. Collagen gels were formed as previously described. Following gelation, microfluidic channels were filled with a 2 mg ml-1 fibronectin coating solution and incubated overnight. Prior to cell seeding the coating solution was replaced with complete media and equilibrated for another 2 - 4 hours. A cell suspension of 2-3 x 106 cells ml-1 was flowed into one microfluidic channel and the cells permitted to adhere to the rigid glass or compliant gel surface as they settle out of suspension by gravity. Endothelial cells were cultured for 24 - 48 hours on the rigid (2D monolayer seeding) or compliant (3D monolayer seeding) surface before further treatment. Pro-angiogenic factors were either presented as a gradient or at uniform concentration. For this assay VEGF (10 - 50 ng ml-1) and S1P (250 nM) were used to promote morphogenesis. Shear stress on endothelial monolayer. Flows can also be generated within either or both of the channels for the purpose of either maintaining a stable gradient across the gel region or subjecting the cell monolayer to surface shear stress. To generate channel flow, the inlets are connected to constant pressure reservoirs and the outlets to a syringe pump set to maintain a constant flow rate (time-varying flows are also possible, but have not yet been tested). (See supplementary material for details.) vi. Characterization of capillary morphogenesis and tube-like structures 54 Phase-contrast, epifluoresence and confocal microscopy were used to characterize capillary morphogenesis and the 3D morphology of EC structures. Florescent and phase contrast images were acquired on Nikon TE300 microscope equipped with a Hamamatsu camera and Openlab image acquisition software. Time-lapse images were taken of live samples every 12 - 24 hours with phase contrast microscopy. At the end of an experiment, samples were fixed with 4.0 % paraformaldehyde (PFA) and tagged with a fluorescent marker for actin cytoskeleton and cell nuclei. Confocal images were collected using spinning disk confocal microscope (Zeiss Axiovert 200M) furnished with Imaging Suite (PerkinsElmer Life Science) acquisition software. A series of 100 optical serial sections (1 ptm thick) were obtained. The aligned images were stacked and rendered for 3D visualization using Imaris (Bitplane, MN). vii. Microvascular Endothelial Cells Sprouting Movies To demonstrate the capability to monitor cells in real-time, time-lapse movies were recorded of endothelial cells during sprouting angiogenesis. An endothelial monolayer was formed on collagen gel as previously described. The ptFD was kept in a custom built environmental control chamber at 37 9C and 5% C0 2 and cells visualized with a Zeiss inverted microscope. To minimize evaporation during the course of the experiment, media reservoirs (with zero height differentials) were connected directly at each inlet and outlet ports. The device was then placed in a secondary container with a humidified local environment and cut-out glass window in the bottom for visualization. Bright-field images were taken with the AxioCam MRm (Carl Zeiss) (at single optical plane) at 2 minutes interval with AxioVision image acquisition software. 55 viii. Cytoskeleton and Nuclei Staining F-actin distribution and number of cells involved in "capillary - like" network or tube structures were assessed after 2-7 days culture in the ptFD. F-actin and nuclei staining were performed after fixation with 4.0 % PFA (30 minutes). The fixed samples were rinsed twice with 1X phosphate buffered saline (PBS), treated with 0.1 % Triton-X (1-2 minutes), rinsed with 1X PBS followed by the infusion of a mixture of DAPI and rhodamine phalloidin (30 minutes) and a final wash step with 1X PBS. d. Results i. 3D microfluidic bioreactor (FFD) A new ptFD was designed and fabricated from PDMS using standard soft lithography and replica molding techniques. To facilitate precise control of the fluidic microenvironment (shear levels and soluble factors), the device consists of two parallel flow channels and a central gel cage which was designed to immobilize injectable scaffolds (soft hydrogels) for cell culture. A staggered array of micro-pillars is incorporated in gel cage to provide mechanical stabilization for the scaffolds which can biologically-derived or synthetic. We have found that this specific design provides optimal mechanical support (supplementary material Figure 2-6) for gels and can sustain pressure differentials in excess of several cm of water. With the gel in place the two microfluidic channels are essentially isolated from each except for the diffusion or convection of soluble factors through the porous scaffold from one channel to the other. Creating a 3D in vitro microenvironment. Hydrogel scaffolds are directly microinjected in to the CGCC. The microinjection protocol provided the ability to load minute volumes of scaffold material, 56 with or without cells, directly in the designated space without the need for the alternative perfusion loading. PDMS surface modification. PDMS was chosen for the device fabrication because of its documented biocompatible and excellent optical transparency. However, after polymerization flat PDMS surfaces are hydrophobic and exhibit poor wetability, which was not amenable to scaffold confinement. Scaffold injection into untreated PDMS devices resulted in gels that exuded into the channels and often did not fill the gel cage, resulting in small bubbles adjacent to the micro-pillars. Fortunately, the hydrophobicity of PDMS is tunable and PDMS surfaces can be temporarily rendered hydrophilic by exposure to air plasma (136). Subsequent to plasma treatment, hydrophobic recovery time is dependent upon the method of preparation and storage. Recent work has shown thermal aging, longer oxidation time and storage in nitrogen to be effective in delaying the recovery of hydrophobicity (137). Here PDMS was surface treated with air plasma for 2 minutes, longer than is typically required for immediate bonding to glass. To maintain the seal when connected to macro-scale plumbing, typical microfluidic devices are permanently bonded or vacuum sealed (138) to glass or a layer of PDMS to prevent leaks. Here neither technique could be used since it was necessary to have direct access to the gel cage for scaffold injection. Instead, we found that the plasma treatment used to contain scaffold spreading and filling was sufficient to promote bonding to glass. We have found that the strength of the bond between PDMS and glass increases over time and have experienced minimal problems with leaks. 57 Figure 2-1: Schematic of pFD and scaffold loading protocol. (a) The pFD consists of two parallel channels for controlling fluid flow and a central gel cage for 3D cell culture. One key feature of the gel cage is the staggered array of micro-pillars which provide mechanical support for soft hydrogels. (b) Scaffold loading protocol. PDMS wafers were fabricated as described in Materials and methods. PDMS wafers were cleaned, sterilized and surface treated (step 1). Pre-polymer solution was precisely microinjected in the gel cage. Hydrophilic PDMS surface permitted proper gel spreading and filling (step 2). Microfluidic channels were defined by sealing device with glass cover slip. (c) Microinjection station in sterile laminar flow cell culture hood. Precise scaffold loading can be achieved with a custom made microinjection setup which includes digital microscope and xyz micromanipulator with microliter syringe. (d) Micrograph of assembled [tFD showing media channels and collagen partially stained with coomassie blue. Both biologically derived and synthetic matrices used for traditional macro-scale 3D cell culture can be precisely immobilized in gel cage. With the gel in place media channels are virtually isolated except for diffusive or convective transport of molecules through the porous matrix. 58 ii. Concentration gradient maintained in ItFD A typical time course of the concentration profile in the gel cage following the introduction of a fluorescent dextran to one channel is shown in Figure 2-2a. Normalized florescence intensity (C Cmin)/(Cmax - Cmin) in the gel is plotted as a function of normalized distance (X/Xmax) from the dextran (40 kDa) 'source' channel . Depending on the width of the gel region, a steady state concentration profile was reached in the order of an hour. For gradients established under static (no flow) conditions, we have demonstrated the ability to sustain a stable gradient for up to 40 h (without replenishing either the source or sink channels). While a linear gradient can be maintained, there is depletion and accumulation of dextran in the source and sink channels, respectively. In order to maintain a constant concentration, it is necessary to continuously replenish the sink and source channels. This was achieved by establishing a slow flow (10 pl min-1) in the two microfluidic channels, one with control fluid and the other containing fluorescent dextran, to maintain a gradient across the gel (Figure 2-9) for several hours. These results demonstrate our ability to simultaneously control surface shear stress (on the surface of the endothelial monolayer) and gradients in our device. In this study, 40 kDa dextran (non-reactive solute) was chosen because it is similar in size to several growth factors of interest including VEGF, bFGF and IGF (139). The experimental results for gradients under static conditions were compared to results from a finite element (Figure 2-8) model, assuming a diffusion coefficient of 4 x 10-7 cm 2 s-1 with the gel region. Fig. 2d shows the comparison between the theoretical results (solid lines) and experimental results for two gel cage geometries. This value for diffusivity agrees well with the range of values reported in the literature (140), (141). The ability to generate gradients of soluble factors across a 3-dimensional matrix provides the potential to simulate physiologically relevant mechanisms during directional migration including sprouting angiogenesis, tumor metastasis and immune 59 response. The dynamic motility of migratory cells can be probed in a controlled microenvironment and monitored in real-time. In addition, the spatial and temporal presentation of such factors provides another level of control which would be physiologically relevant but not possible in most current systems. Saadi et al. however, have recently demonstrated the ability to generate concentration gradients in their microfluidic ladder chamber (142). iii. Microfluidic cultures, model system: capillary morphogenesis As a case study we used our ptFD system to study microvascular endothelial morphogenesis. The primary mechanism by which new blood vessels or capillaries are formed in vivo, angiogenesis (143), involves a series of well delineated steps including matrix degradation, cell migration, proliferation and lumen formation. This is a tightly regulated process that is affected by metabolic stress (144), (145), mechanical stresses (146), (147), (148), soluble factors (149) and ECM matrix components (150), (151). With this wide range of stimuli and morphological responses they elicit this serves as a model system to demonstrate the unique capabilities of our [FD. 60 q 'U (a)Demonstration of Gradient across gel "cage" (b) 3D pFBR Cell Seeding Modes PDMS 0.8 (c) Cell culture configurations scaffold Cells on 3D scaffold droplet micro-pillar Cells in 3D 0.6 media "ereservoirs 0 EL0.4 PDMS wafer in mechanical clamp Cells on pchannel E_0.2 glass cover slip Normalized Distance 1 -0.5 e 50 Pa 0.9 5 0.4 *100Pa-Expt.1 0.8 X 100 Pa - Expt. 2 1 0.7 CC * 100.6 0 .3 xK 0.6 0- 0.2 * . *e *c* OA )K) J 0.3 6 0.2 0.1 20.1 2 0 0 Time (minutes) 0 0.2 0.4 0.6 Normalized Time 0.8 1 Figure 2-2: Experimental design and device capabilities (a) Demonstration of gradient across gel cage. Collagen gels were formed as described in Materials and methods. Fluorescent dextran (40kDa) was used to demonstrate the capability of generation gradients in the ptFD. Shown are the time-course of fluorescent intensity and concentration of dextran (used to simulate nonreactive solute within that size range) across the gel 'cage'. Plot (a) shows representative experimental curves plotted for over 40 h. (b) Schematic of cell culture assays. (top) EC sprouting assay. Cells are cultured on a 3-dimensional gel with physiological relevant polarity. (middle) 3D encapsulation assay. Cells are suspended in the gel and are initially separated from each other. (bottom) 2D migration assay. Cells form monolayer predominantly on 61 glass substrate (non-compliant) coated with ECM material (fibronectin). (c) Cell culture flow configurations. (1) For static cultures droplets of media are place on inlet and outlet ports. Devices are kept in local high humidity (Petri dish with water) secondary container in the incubator. (2) Setup used for imposing pressure gradient across gel cage, differential in height of liquid reservoirs. (3) Microfluidic platform. Schematic of platform used for generating physiological levels of shear stress in micro-channels. (d) Plots represent values of normalized intensity at fixed locations in the gel region, solid lines are theoretical predictions and symbols (circles (open-middle, solid-near sink channel) and squares for devices D and C, respectively) (Table 2-1) are for experimental results (detailed in the supplementary material section). (e) Experimental results for the evolution of normalized pressure differential (dP/dPmax) for generating interstitial flow through three- dimensional scaffold in ptFD (detailed in the supplementary material section), values in Pa indicate initial pressure differential. iv. ECs invade 3D matrix to form capillary-like structures reminiscent of sprouting angiogenesis HMVEC-ad were cultured until sub-confluence on a collagen coated flask in EGM-2MV complete media, harvested and subsequently cultured in the ptFD. HMVEC-ad remains viable for a period of several days. Within a few hours following cell seeding EC form a monolayer on collagen gels. In order to demonstrate the capability to better characterize and study the cellular mechanism during sprout formation time-lapse movies were made. In traditional sprouting models this capability is limited since cells are viewed through the monolayer. Here the directional sprouting and migration occurs in the microscopic viewing plane. As a result we were able to capture the dynamics that occurs which have not been demonstrated in other systems. Figure 2-3, panels (a)-(i) show the sequence of morphological changes that occurs. Time-lapse imaging shows a "lead-cell" as it invades the underlying 3D collagen matrix. In case of single sprout formation (supplementary movie 1, available online DOI: 10.1039/B802395F); the lead-cell extends filopodial projections into the underlying matrix while the neighboring ECs on the monolayer remain non-invasive. Cell invasion follows a period of dynamic projection and retraction of filopodia while maintaining 62 contact with the monolayer and remain highly polarized. An initial root-like structure is formed in the direction of migration that persists for several minutes with more dynamic smaller extensions. Subsequent morphological changes included increased penetration depth, filopodial diameter and translocation of cell from monolayer (evident by movement of nucleus) (Figure 2-3c & d) followed by conical structure (onset of lumen formation). The invading cells subsequently form sprouts with open lumen structures (Figure 2-3(h) shows a particle trapped in the newly developing lumen). With this system, we were able to demonstrate all the sequential cellular mechanisms that occur during sprouting angiogenesis in vivo. This provides a very powerful tool for future studies with the capability to answer and clarify some of the controversy in this area of research. Figure 2-3(j) shows a representative result for long term cultures .ECs maintained in cultured for several days form multi-cellular capillary-like structures. Endpoint F-actin and DAPI labeling shows the organization and the complexity of these structures. However, capillaries maintained under static conditions regress and lose their connection to the monolayer. One of the hallmarks of capillary formation is development lumen structures. To demonstrate the presence of open lumens, florescent microspheres were added to the channel on the apical surface of the monolayer. Figure 2-3, panels (k) and (m) provides confirmation of open lumen (microspheres collected in structure). 63 Figure 2-3: Microvascular endothelial cells sprout to form capillary - like structures. (a)-(i). Time-lapse images demonstrating cellular mechanism during early sprouting process (movie in supplementary material online DOI: 10.1039/B802395F). Microvascular endothelial cells were cultured to form monolayer on collagen gel according to Materials and methods. Directional migration and sprouting occurs in the microscopic view plane. Cells were cultured in VEGF enriched media (10 ng ml-1) with a gradient in S1P (250 nM). Time indicated in hours and minutes refers to time after stimulation with VEGF and S1P. Scale bars shown in (a)-(d) represent 20 [1m, those in (e)-(i) 50 [im. (a) Initial root-like structure forms from membrane protrusion just below monolayer. (b) Filopodia lengthens to form highly branched structure. (c) Onset of nucleus translocation into filopodia. (d) Filopodia further thickens, nucleus completely translocated into filopodia and forms cone-like structure. (e) Formation of lumen-like structure behind polarized cell. (e) Cell division on monolayer. (f)-(i) Single sprout elongation, lumen-like structure lengths behind highly polarized cell . Particle trapped in lumen demonstrates it is a open structure. (j) EC monolayer cultured for several days (here 6 days) with soluble angiogenic stimuli (VEGF 10 ng ml-1 enriched media, with a gradient in S1P (250 nM)) form complex multi-cellular capillary-like structure. End point sample tagged with fluorescent marker shows actin cytoskeleton (orange) and nuclei (green). (k)-(l) Another small microvascular sprout, with green fluorescent microspheres collected in lumen space. v. ECs suspended in 3D collagen gels form capillary-like structures The culture of EC populated collagen gels have been previously studied in macro-scale systems (152) but not yet in a microscale device. Endpoint results are shown in Figure 2-5. Isolated cells 64 culture in 3D formed multi-cellular chords and EC rings. To demonstrate the effect of biochemical stimuli, 3D encapsulated ECs were culture in media supplemented with bFGF, VEGF and PMA (Figure 2-5b). As expected, there was a drastically difference in the morphology compared to control samples (Figure 2-5a). In control sample, cells migrate and organize to form isolated multicellular ring-like structure. Cells stimulated with pro-angiogenic factors remodel to form complex interconnected multi-cellular capillary - like structures. In the presence of interstitial flow ECs form multi-cellular structures within the gel and the monolayer at the gel/liquid interface (Figure 2-5c). vi. 2D surface migration promotes formation of tube-like structures Microvascular ECs cultured as shown in Figure 2-2b (bottom) experienced extensive morphogenesis. ECs on the fibronectin coated channel retain their characteristic cobblestone phenotype while a remarkable difference in morphology was evident at the gel surface (Figure 2-4a). Prior to sheet or tube formation, the cells migrated as a contiguous structure into the gel region with a prominent increase in vacuoles and blebs (Figure 2-4b & 4c). These structures were highly dynamic but eventually evolved into more stable sheets (Figure 2-4d) and tubes (Figure 2-4e & 4f). Serial sections of fixed samples obtained from confocal imaging and subsequent 3D reconstruction of EC networks confirm the presence of circular and flattened lumen-like structures which extend throughout the length of the vessel. The existence of continuous lumens is further demonstrated by flowing beads through the vessels under a small pressure drop (supplementary movie 2, available online DOI: 10.1039/B802395F). Some bead can be observed flowing all the way across the gel cage and others collect at necked-down regions in the vascular structure. 65 1 m ic r,-, -bi-ad olow Figure 2-4: 2D migration promotes sheet-like and tube-like structures. ECs cultured on 2D substrate next to 3D collagen gel migrated into gel region to form sheet-like and tube-like structures. (a) EC stimulated with a gradient in S1P (250 nM) and media enriched with VEGF (10 ng ml- 1). Results show a clear transition from cobble-stone to multi-cellular well defined individual 2D tube structures with highly polarized tips. Scale bar shown represents 100 im. (b)(e) The morphogenesis of EC can be tracked over several days. Here, a sequence of micrographs depicting morphological changes during the formation of EC tube-like structures over a 7 day period. Scale bars represent 100 im. Cells migrate into gel region with a prominent increase in vacuolar structures that precede tube structure development. (f) Cells were fixed and stained for actin (yellow) and nuclei (blue). Merged images show complex multi-cellular organization for tubular and flatten sheet-like structure. Scale bar shown represents 100 lIm. (g)-(i) Confocal images of tube-like structure in panel (f), boxed region. 3D reconstruction of serial sections confirms the presence of open lumen structure. (j)-(k) Branched flattened tubular structure with fluorescent microspheres in lumen. Scale bar shown represents 250 pm. 66 Figure 2-5: Single suspended microvascular endothelial cells form multi-cellular structures. Fixed samples of microvascular endothelial cells encapsulated in collagen gels cultured for 4 days. Scale bar shown represents 125 Rm. Cells were stimulated with angiogenic factors or switch to interstitial flow after 24 h after cell seeding. (a)-(c) Micrographs of fixed samples stained for actin cytoskeleton (orange) and nuclei (green). (a)-(b) Images show the effect of biochemical stimuli. (a) Cell cultured in complete EGM-2MV medium, (b) complete EGM-2MV medium supplemented with VEGF/bFGF/PMA cocktail (all at 50 ng ml-' final concentration). Results showed a drastic difference in EC morphology and extent of multi-cellular structures organization. Control samples form EC rings that are mostly isolated from each other, while EC cultured with potent proangiogenic factors organize to form cellular cords. (c) Interstitial flow (flow direction indicated by arrow bottom to top), with complete medium EGM-2MV. ECs form multi-cellular structures and monolayer at gel/medium interface. e. Discussion and Conclusions In vitro models offer enormous potential for gaining new insights into essential but complex in vivo phenomena. Angiogenesis is one example that has been widely investigated because of its profound physiological and pathological importance. The main challenge has been to provide a model system that accurately mimics key features of the in vivo microenvironment yet provides means for continuous observation and control. The growth of new blood vessels involves a cascade of events 67 that are a result of molecular, cellular and mechanical interactions in a spatiotemporally controlled environment. As a result in vitro systems should be able to accommodate these physiologically relevant features. We have developed a novel microfluidic (ptFD) system that for the first time is capable of mimicking many of these complexities on a single in vitro platform. The integration of 3D scaffolds and microfluidic networks permits the control of the fluidic environment with the benefit of a more in vivo -like 3D micro-architecture and high-quality imaging capabilities for dynamic studies. With this platform we are able to control (1) surface shear stress, (2) interstitial flow through the matrix (3) gradients in non-reactive solutes, (4) properties of cell culture scaffold and (5) simultaneously monitor cells in real-time. We have presented a new procedure for introducing 3D matrices into microfabricated systems using surface treatment followed by gel microinjection. Our gel cage geometry incorporating a staggered array of micro-pillars is the key enabling feature of this design. Soft hydrogels can be mechanically supported against differentials in pressure across the gel. We demonstrate the flexibility of this system in three separate EC capillary morphogenesis assays. The capillary-like structures that form in these three assays differ drastically with the most promising and physiologically relevant being the 3D sprouting assay (Figure 2-3). In 3D encapsulated assay (Figure 2-5); ECs form multi-cellular cords and isolated ring structures, while ECs that predominately migrate in a 2D manner (against hard substrate into 3D matrix region) form tube and sheet-like structures (Figure 2-4). Finally, we have also demonstrated the ability to monitor cells in real-time by recording time-lapse movies of endothelial morphogenesis. We find that the ability to follow and capture these dynamic processes in time provides insights not possible through single images taken on the order of hours or days apart. 68 While the original motivation and design specifications for the 3D-[tFBR were tailored to study the morphogenesis of ECs in response to biochemical and biophysical stimulation, variations on this basic platform can be used for a variety of other cell experiments. Some examples include studies of cell migration through 3D matrices and co- or multi-cell culture systems to create the appropriate modes of cell-cell communication necessary for the creation of more complex tissues. f. Acknowledgements The authors thank Carlos Semino and Alisha L Sieminski for discussions about angiogenesis experiments, Jeffrey Borenstein and Ernest Kim for insights regarding microfabrication techniques, Alexandre Micoulet for assistance with time-lapse imaging and Hyungsuk Lee for help with confocal microscopy. This work was supported by funding from Draper Laboratory (Cambridge, MA).VV is supported by NIBIB (EB003805 and a research supplement grant to VV). 69 g. Supplementary Material i. Optimization of gel cage geometry The "gel cage" contains an array of micro-pillars which serves two main functions. Firstly, it permits the delivery and precise localization of small volumes of injectable scaffold material. During microinjection the liquid scaffold in confined within this region due to surface tension. Secondly, once the liquid scaffold has polymerized the micro-pillars provide additional mechanical support. The mechanical stability of hydrogels in the piFD is dependent on the geometry of the "gel cage" region. In previous designs which consisted of a "regular array" of micro-pillars, gels would fracture (Supplementary Fig. 1c) as a result of small pressure differentials across the 'gel cage". The optimized geometry that is presented in this paper, lends mechanical stability and the gels used in the present study are able to withstand pressure differences up to ii. - 200 Pa. PDMS surface treatment facilitates scaffold microinjection Supplemental Figure 2 shows a water droplet on (a) untreated PDMS and (b) PDMS that was treated with air plasma. A reduction in the contact angle (125" to 21") allows for favorable wetting dynamics which permits scaffold spreading and filling during microinjection of gel solution. Supplementary Fig.2 c-f shows typical scaffold loading results for PDMS surfaces that have been rendered hydrophilic. Optimal microinjection results were obtained for contact angles between 200 - 40L (values obtained from hydrophobic recovery data for water droplet on flat PDMS surface which corresponds to approximately 0.5 to 2 hours following surface modification). 70 iii. Finite element analysis for diffusion of a non-reactive solute in microfluidic device Supplementary Figure 3 shows simulation results for the distribution of a non-reactive solute (in our gradient experiments, 40kDa dextran) in the "gel cage" region. Dirichlet boundary conditions were prescribed at the inlets for both sink (Csink = 0) and source (Csource = 1) channels, continuity at the scaffold interface and zero-flux condition at all other surfaces. A diffusion coefficient ratio (Dgei/Dfluid) of 0.1 was assumed for finite element simulations. Normalized intensity values along a line (drawn diagonally to avoid micro-pillars) in the gel region were obtained, the resultant normalized intensity from two fixed points on this line (indicated by * and ** in supplementary Figure 3) were recorded for different simulation times. The results obtained (two different gel cage geometries) were compared to experimental results (obtained in a similar manner) in Figure 2d of the main text. iv. Simultaneous control for fluid flow and gradients To demonstrate the multi-parameter control capability of our microfluidic platform, gradients studies where performed with convective flow (hence surface shear stress e.g. on a monolayer) in the microfluidic channels. Here the fluid flow (fixed flow rate controlled by a syringe pump) is perpendicular to the diffusion direction across both lateral surfaces of the gel cage, thus constantly replenishing the sink and source channels to a fixed concentration. The setup consists of two reservoirs that are connected at the base by a long tube (3mm ID Tygon tube, Cole Palmer) which facilitates rapid equilibration of reservoir fluid height thus eliminating any pressure differential across the gel region. This ensures that the evolution of the concentration gradient in the gel region is due to diffusion and not convection through the gel. In addition, the equilibration tube is long 71 enough to avoid contamination of the sink reservoir with fluorescent dextran. A similar procedure to the one presented in the main text was used to analyze fluorescent micrographs. Supplemental Figure 4 shows the results from these experiments. Panel a, shows results (from a single device) of the time evolution of the concentration profile up to 6 hours. A steady state profile is reached and maintained for several hours. To visually demonstrate that there is flow in the channel (while establishing a gradient), fluorescent particles were added to the source reservoir (at t = 15 hours) and fluorescent images taken at 1 second intervals. Supplemental Figure 4b shows the localized increase in fluorescence intensity associated with the streaks made by the moving particles within the channels. The baseline intensity in the channel remains relatively constant as well as the sustained gradient (intensities obtained along the dashed line) in the gel. Application of Interstitial flow through three dimensional scaffolds Supplementary Figure 5 shows the reservoir set-up for imposing pressure differentials across the three-dimensional gel scaffold. The ability to isolate the two microfluidic channels is demonstrated in panel (a), which shows the microfluidic device with two different color fluid streams. Threedimensional collagen gels were formed as described in the main text. To ensure easy visualization of liquid column levels, green and red food coloring dye were added to PBS. The upstream (with higher liquid column) reservoir (2.5cm tall Tygon tube, 4mm ID, connected to reducing connector 1/8"X 1/16" ID, Cole Palmer) was colored red and the downstream colored green. A the beginning of each experiment equal volumes of PBS were added to the upstream and downstream reservoirs, and the system was allowed to equilibrate for approximately 2 hours before imposing the pressure differential. Following equilibration, the pressure differential was set (100 Pa or 50 Pa), and mineral oil (M5904, Sigma) was added to all liquid columns to prevent evaporation (these experiments were done outside of the incubator). Supplemental Figure 5b-e shows images of the 72 liquid reservoirs at different time points during the course of the experiment. The devices were oriented such that the downstream and upstream reservoirs were directly in front of each other. The resulting contrast (due to the difference in colors) made it relatively easy to track the evolution of the liquid column levels. The dashed lines indicate the levels of upstream and downstream liquid levels. Figure 2d in the main text shows the result from three separate experiments; two with an initial pressure differential of 100 Pa and one with 50 Pa. v. Time-Lapse Video-Microscopy# (#movies can be found online at RSC Publishing website under Supplementary Info here: http://pubs.rsc.org/en/Content/ArticleLanding/2008/LC/b802395f) Microvascular endothelial cells sprouting movie Supplementary movie 1 and lb shows the dynamics during sprouting from an intact endothelial cell monolayer. Movie 1: Initial invasion starts -6 hours after stimulation with growth factors. Highlights include filopodial dynamics and nucleus translocation into protruding filopodia. Note that structures are in various degrees of focus due to their 3-dimensional nature. Movie 1b: This is a continuation of movie 1. Highlights include observation of cell proliferation on monolayer and lumen-like structure formation and progression Vacuole dynamics during 2D migration Movie 2 73 Perfusion of vascular structures with florescent beads Movie 3: Shows fluorescent beads flowing through a network of endothelial tube structures. A suspension of beads was perfused through the channel in which cells were initially seeded. The endothelial network that developed (after several days in culture) resulted in a direct connection between the two channels thus allowing perfusion of the beads through the vascular network. vi. Supplementary Figures Device label Micro-pillars (pm) Gel cage (pm) Channel height (pm) A 10Ox 100 1000 x 1100 120 B 10Ox 100 500 x 1100 120 C 250 x 250 1250 x 1750 240 D* 250 x 250 750 x 1750 240 Table 2-1: Dimensions for microfluidic network. Microfluidic channels are 500 im wide x 2 cm long. * The gel cage for device D is asymmetric with short side measuring 500 ptm. The number of micro-pillars in gel cage differs for each device: A-28, B-16, C-8 and D-5. 74 Figure 2-6: Gel cage geometry. Micrographs showing gel cage layouts, "regular array" - (a) and (c) and "staggered array" - (b) and (d) of the VFD "gel cage" (micro-pillar 100 pim x 100 jim). In panels (c) and (d) the gel cage is filled with a self-assembling hydrogel. 75 -urn I I I I L Figure 2-7: Scaffold delivery into microfluidic device via microinjection procedure. Water droplet on (a) native PDMS (hydrophobic) and (b) plasma treated PMDS (hydrophilic). Panels (c)-(f) illustrate microinjection procedure, (f) channels sealed with glass coverslip; sharp line at the liquid-air interface is due to light diffraction (image taken prior to gelation at 37*C). 76 (a)(b) Csn - 09 - 0-7 I-0-3 ~~02 0_ 02 0 02 04 0A 0A 12 1 250 pnj _=~ Figure 2-8: Distribution of a non-reactive solute in scaffold cage. (a) 2D surface map showing results from finite element solution. Concentration of dextran obtained by assuming diffusion coefficient ratio (Dgei/Diuid) = 0.1 and Dgei = 4 X 10' cm 2 s-. (b) Concentration distribution in gel region. Dashed line indicates the path (avoiding micro-pillars) from the sink to source channel for which concentrations are used to compare to experimental results. Concentrations at points * and ** along diagonal line were used to generate Figure 2(d) in main text. 77 (b) (a) 1- 140 S 0.810 c - - U U 6---- -. * gel 120- 5 min min 30 min 60 min 90 min 180 min 360 min 100- * 80 C w *60 iN 0.4 h0.2 6U 40 20 - z Normalized Distance Normalized Distance Figure 2-9: Evolution on the concentration profile across the "gel cage" with a constant flow rate in microfluidic channels. (a) Normalized average fluorescent intensity. (b) Transients obtained within a few seconds of each other. Spikes in intensity indicate streaks made by particles that flow past the gel region. Dashed line indicates the path along gel and channel for which intensities are recorded. Red and green stars (*) on micrographs (same device at two different time points) indicate the position of beads and corresponding spike in intensity; arrow denotes flow direction. 78 Figure 2-10: Evolution of liquid pressure differential across "gel cage" induces interstitial flow through the three-dimensional scaffold. (a) Photo of microfluidic device, two microfluidic streams separated by three-dimensional gel scaffold. (b) Photos of liquid level in reservoir at four different time points during the course of the experiment (50 hrs). Dashed line indicates the position of the upstream (red) and downstream (green) reservoir liquid levels. Contrast is due to the orientation the device (reservoirs directly in front each other). Vertical arrows indicate the pressure differential across the scaffold. 79 Appendix I: Implementation of microfluidic-based 3D cell culture platform in coculture and imaging studies The microfluidic based cell culture platform developed in this thesis and subsequent modifications has formed the basis for additional studies (Figure 2-11). AU Epithelial co-culture Model: Hepatocytes and EC Sudo et al., FASEB J2009 rn * Co-culture Model for ECs expressing KLF2 and SMC Mack et al., Journal of Biological Chemistry 2009 Orn UU U Co-culture Model for ECs with different cell types Chung et al., Lab Chip 2009 Conjugated Polymer Nanopartides for Two-Photon Imaging of ECs Abdul Rahim et al, Advanced Materials 2009 Figure 2-11: Diverse Applicability of Microfluidic-based 3D cell culture platform Images were reproduced from (A) Sudo et al., (153), (B) Mack et al., (18), (C) Chung et al., (108), and Abdul Rahim et al., (154) Work done with this platform by (A) Sudo et al., demonstrated its applicability for generating 3D tissue-like structures from primary hepatocytes (isolated from rat liver). The functionality of the 80 engineered tissue was demonstrated by visualizing metabolites (fluorescein diacetate - FD) that was secreted into bile canaliculi structures and ethoexyresorufin O-dealkylase (EROD) activity. (B) Mack et al., investigated the effect of endothelial KFL2 expression on smooth muscle cell (SMC) migration. Under coculture conditions, the expression of transcription factor KFL2 was found to significantly reduce SMC migration. In the same report, KFL2 was unregulated in endothelial cells subjected to a shear stress profile that is characteristic of an adaptive remodeling coronary collateral waveform. (C) Chung et al., further demonstrated the applicability for coculture studies with relevance to cancer cell (MTLn3 - adenocarcinoma cells and U87MG - glioblastoma cells) or smooth muscle cell (10 T 1/2 - smooth muscle cell precursor) endothelial paracrine interactions. Under culture conditions, MTLn3 cancer cell was found to promote endothelial migration while U87MG had minimal effect whereas, 10 T cells suppressed endothelial migration. (D) Abdul Rahim et al., demonstrate the applicability for evaluating a new fluorescent probe for two-photon imaging application. Two-photon imaging has been identified as a promising tool for in vivo imaging which holds the potential for high sensitivity, greater tissue penetration depth, reduced photodamage to tissue and lower instrument associated costs (154). Additional studies (155), (109), not directly related to this thesis has also used similar platforms and methods developed in this thesis demonstrating broad applicability for different biological studies. 81 Appendix III: Biochemical Regulation of Angiogenesis: Vascularization of Scaffolds in a Microfluidic Cell Culture Platform vii. Biomaterial Scaffold Background In formation A critical element in most tissue engineering approaches is the biomaterial scaffold which would serve to mimic many roles of the extracellular matrixes (ECM) found in tissues (156), serving as a structural support while providing biochemical cues to regulate cell function (157). The physical and chemical properties of the scaffold are critical, for example for anchorage-dependent cells adhesion is vital for cell survival and in endothelial cells integrin-mediated adhesion may trigger different signaling pathways depending on the attachment motif (158), (159) available and the ability to generate traction forces (158), (160), (152), (148). Scaffolds for in vitro angiogenesis studies and potential vascular-related tissue engineering with angiogenic potential (ability support vascular ingrowth) with physical (elastic modulus, pore size, fiber dimensions) properties and chemical composition that can be controlled by design are highly desirable. Naturally-derived biomaterials (e.g. MatrigelT M , collagen and fibrin gels) have been scaffold of choice for most in vitro angiogenesis models. However animal-derived biomaterials may not be suitable for tissue engineering applications such as the development of highly vascularized scaffolds; since they could potentially carry and transmit harmful pathogens (161) as well as associated batch-to-batch variability. Synthetic biomaterials may provide an alternative to naturally derived matrices in light of their associated risks. Moreover, synthetic scaffolds are flexible for design and optimization. 82 Biomaterials composed of self-assembling oligopeptide has been identified (162), (161) as potential candidate for tissue engineering applications. These oligopeptide consist of alternating hydrophilic and hydrophobic amino acid residues. The first member of this family, EAK16 (AEAEAKAKEAAEAKAK), was originally discovered in a region of alternating hydrophobic and hydrophilic residue in a yeast protein known as zuotin (163), (164). Since their discovery, a number of self-assembly peptide systems (e.g. RAD16-I, RAD16-II, PRG, KLT, VEVK9, VEVK12) have been designed and developed (163), (165), (166). These oligopeptides are highly soluble in pure water and have the tendency to form stable P-sheet structures (163). Upon the addition of monovalent cations of physiological salt solution these oligopeptides spontaneously assemble to form matrices consisting of interwoven nanofibers measuring 10-20nm and pore size of 50-200nm in diameter (162). These peptide gels have been shown to support neurite outgrowth and formation of functional synapses (167), chondrocytes development and ECM synthesis (168) and hepatocyte differentiation (169). Another important characteristic of these peptide biomaterials is that their mechanical (stiffness) and biochemical properties can be controlled by the manipulation of the peptide concentration and adhesion motifs. Studies have also been done with functionalized peptide scaffolds (170). In particular the RAD16-I class of oligopeptides has been modified with short functional amino acid sequences PRG (2-unit RGD) and KLT (mimicking VEGF helix region) which have been shown to endothelial cell survival, proliferation, migration and morphological differentiation in 3D encapsulation and gel sandwich assays (166) (these results were published at the same time as results from our microfluidic studies). 83 Methods Gel preparation and monolayer formation on RAD16-I and RAD16-I/PRG/KLT self-assembling peptide gels Two different types of synthetic peptide gels were used in these experiments, RAD16-I (unmodified form; gift from PuraMatrix 3DM Inc.) and mixture of RAD16-1 and modified peptides KLT, Ac(RADA) 4G4KLTWQELYQLKYKGI-CONH 2 and PRG, Ac-(RADA) 4GPRGDSGYRGDS-CONH 2 (gift from Zhang lab). RAD16-I gel-forming mixture was prepared by first combining 1% RAD16-I stock solution with 20% dextran solution (tissue culture grade, D8802; Sigma-Aldrich) at a 1:1 volume ratio. To initiate gelation, equal volumes of 1X PBS (containing Ca2+and Mg2 +)and RAD16-I/dextran solution were mixed together to obtain a final concentration of 0.25% RAD16-I. Blended gelforming solution (RAD16-I/PRG/KLT) was prepared by combining 0.5%RAD16-I mixture (i.e. 1% RAD16-I plus dextran solution) with equal volume PRG/KLT/PBS solution (i.e. PRG/KLT plus 2X PBS at 1:1 volume ratio). Gel-forming mixtures of 0.25% RAD16-I and RAD16-l/PRG/KLT were loaded into PDMS microfluidic devices as previously described and incubated at 37C and 5% C02 for at least 8 hours. Devices were kept in a secondary high humidity container - "humidity box" as before to prevent gels from drying out. This incubation period is much longer compared to collagen gels (30-35 minutes), however this is necessary for forming uniform gels since higher concentrations of PBS was found to interface with the gelation process. Following polymerization, peptide gels were incubated with cell culture medium (EGM-2MV) overnight. HMVEC monolayers were generated in the device as previously described. Briefly, HMVEC cell suspension (-4 x10 6 cells/ml) was prepared and added to one of the microfluidic channels, devices 84 inverted to allow cells to settle onto or near the gel surface. Once monolayers were formed, cell culture medium was replaced with experimental medium (details included with results). During the course of the experiment, phase contrast/bright field images (on a Nikon Eclipse Ti-U; with DS-2MV camera using NIS Elements D image acquisition software (Nikon Instruments Inc., NY USA)) were taken to monitor capillary morphogenesis. Results and Discussion Results are presented in the form of represented micrographs for "optimal" culture conditions obtained with regards to gel concentration, gel composition and experimental media. Initial preliminary experiments were done by suspending HUVEC in RAD16-I gels (using a different gelation protocol from the one described above)-3D encapsulation assay (Figure 2-12). The 3D encapsulation method was previously used in our lab by Sieminski et al., (152) and more recently by Wang et al., to evaluate the angiogenic potential of "designer self-assembling peptide nanofiber scaffolds" (166). In these studies "macro" size gels were used which permitted a wide range of concentration; however lowering concentration gels which correlate to significantly lower stiffness (e.g. for RAD16-I, 0.1% gel measured 46 Pa; and 0.287% gel measured 400 Pa) was found to support extensive capillary-like network formation (152). However using the "old" gelation protocol (shorter time for peptide polymerization before incubation with cell culture media) which permitted 3D encapsulation assay did not allow for gel concentration within that range. As a result a new protocol (one described above) was developed for forming peptide gels in the microfluidic device. This protocol called for much longer incubation time (t ~ 8 hour, cells suspended in gels as with 3D assay would not remain viable) as a result subsequent experiments were done with monolayer sprouting assay. Furthermore, capillary sprouts formed from an intact monolayer are 85 readily perfusable (41) and has a similar polarity to in vivo and might be a superior strategy for engineering patent, perfusable pre-formed vascular networks. 1 lOOpm Figure 2-12: 3D encapsulation assay HUVEC suspended in RAD16-I self-assembling peptide (A) and rat tail collagen type I (B) gels. Scale bar 100 [tm. Monolayer Sprouting Assay The functionalized peptides found to have similar structural properties to RAD16-I sequence however with a notable increase in HUVEC attachment, viability, proliferation and migration (166). Consistent with this report we found that HMVEC attachment to RAD16-I/PRG/KLT was found to be consistently better than unmodified RAD16-I gels. More often, clusters of rounded cells or gaps would be found on monolayers formed RAD16-I (Figure 2-13 (A) inset). 86 A RAD16-I B RAD16-1 plus PRG & KLT Figure 2-13: HMVEC Sprouting Assay - RAD16-1 and RAD16-I plus PRG & KLT Micrographs showing HMVEC monolayer 0.25 % RAD16-I (A) and 0.25% RAD16-l/PRG/KLT peptide gel 24 hrs after stimulation with VEGF gradient. Monolayers were formed as described in methods. Promote migration and capillary morphogenesis, EGM-2M medium was supplemented with 50 ng/ml bFGF and 250 nM S1P and added to apical channel. To establish a gradient in VEGF, VEGF was added to EGM-2MV containing both bFGF and SiP (both at the indicated concentration) to a final concentration of 40 ng/ml VEGF. This cocktail was then added to the basal channel opposite the monolayer. Scale bar 100 um Furthermore, monolayers cultured in EGM-2MV supplemented with 50 ng/ml bFGF and 250 nM SiP on RAD16-I/PRG/KLT gels form extensive sprout structures measuring over 100 prm (Figure 2-13 (B)) in response to VEGF gradient compared to RAD16-I gels. This is consistent since attachment and cell survival are clear prerequisites for sprout formation. Occasionally, in regions where cell cultures are observed on 0.25% RAD16-I gels shallow membrane projections are observed (Figure 2-13 (A) inset). It is foreseeable that the mechanism for sprout elongation from a monolayer and capillary morphogenesis in singly suspended cells in a 3D gel might be different. 87 The most obvious mechanistic difference involves the active penetration of their underlying matrix to emerge from the monolayer (see additional discussion below). RAD16-I plus PRG & KLT E 72hrs. Figure 2-14: Capillary morphogenesis on RAD16-I/PRG/ KLT self-assembling peptide gels Micrographs of HMVECs sprouts emerging from monolayers generated on RAD16-1/PRG/KLT selfassembling peptide gel at 24 (A), 42 (B) and 72 hrs. (C). Methods and experimental medium composition as before. Scale bar 100 pim. 88 One important criterion for successfully generating vascular network is the growth, survival and eventual maturation/stabilization of the network. Examination of sprouts generated on RAD16I/PRG/KLT gels over the course of several days revealed that sprouts narrow (Figure 2-14(B)) and are subsequently pruned leaving a portion attached (Figure 2-14(C)) to the monolayer followed by single cell migration through the 3D matrix (Figure 2-14(C) and (A-B)). 1 I IN Figure 2-15: Single cell migration through RAD16-I/PRG/KLT functionalized selfassembling peptide gels 89 Micrographs of a single HMVEC cell migrating in 3D through RAD16-I/PRG/KLT (A) showing higher magnification (B-C) of regions indicated by arrows in (A), showing cell "tracks". (A) Boxed inset shows another cell "stopped in its tracks". Scale bar 100 prm. The mechanism but which cells from monolayer penetrate the underlying peptide gel, elongates to form longer sprouts or migrate as single cell through the 3D matrix in unclear. In samples with singly migrating cells, migration "tracks" are clearly visible in phase contrast images (Figure 2-15(A)) even more so at higher magnification with increased contrast (Figure 2-15(B)). The peptide sequence for RAD16-I, PRG or KLT was not designed with protease cleavable sites that are present in later designer peptides (165). These newer scaffolds with MMP-2 cleavable motif were found to exhibit favorable conditions thus permitting accelerated 3D migration which was independent of scaffold stiffness (165). In our experiments, it is likely that cells are able to tunnel their way through and push the matrix fibers away to create a passage for migration. However further investigation in necessary to answer this sufficiently question, possibly visualizing matrix using reflectance microscopy or ultrastructure obtained from TEM to visualize matrix fiber orientation in the vicinity of sprouts or migrating cells. It would also be interesting to compare the sprouting response for RAD16-I/PRG/KLT and MMP-2 cleavable peptides. We anticipate that these peptides would support more extensive EC invasion and sprout elongation. Concluding Remarks Preliminary work with peptide (RAD16I and RAD16II) for the endothelial sprouting assay soon demonstrated that the angiogenic response, in particular, the degree of invasion and sprout formation, was very low compared to the widely used rat tail type I collagen gels. Recently we revisited these sprouting experiments with self-assembling peptide gels as the scaffold, and 90 developed a new protocol which permitted the loading of lower concentration gels (almost 10 times lower concentration with correspondingly lower stiffness (152)). With these softer gels EC invade to form capillary-like structures, a significant improvement. RAD16-I/PRG/KLT self-assembling peptide gels permitted HMVEC to invade from intact monolayers to form capillary-like structures. This response was an improvement to cultures with RAD16-I under same culture conditions. Acknowledgement The work presented in this section (Appendix III) was done in collaboration with MIT Summer Research Program (MSRP) student, Pablo Rosado who worked under my supervision during the summer of 2008. 91 Appendix II: Microfluidic Device Design Gallery Figure 2-16: Example of microfluidic design and mask layout (A) Layout of microfluidic device for creating transparency mask and silicon wafer master. (B)-(C) Higher magnification of individual devices with narrow (B, Top) and wide (B, bottom) "gel-cage", showing a staggered rectangular array. In the final fabricated product (PDMS device) the resulting "gel-cage" consists of an array of post which confines a liquid pre-polymer mixture due to surface tension effects and provides mechanical stability for the polymerized gel against pressure differential across the gel region. 92 Chapter 3: A Model for Aqueous Humor Outflow across the Inner Wall of Schlemm's Canal: Direct Imaging of Giant Vacuole Dynamics using an in vitro Microfluidic-based Platform a. Introduction Primary open angle glaucoma (POAG) is thought to occur as a result of an obstruction to aqueous humor (AH) outflow somewhere in the vicinity of the endothelium lining the inner wall of Schlemm's canal (SC). The mechanism of passage has been a source of considerable speculation and direct observations with in vivo models remain a challenge. Intercellular and giant vacuole (GV) pores have been implicated as the primary pathway for AH outflow. Nevertheless, the flow mediated mechanisms that regulate giant-vacuole formation and subsequent aqueous humor outflow dynamics across the inner wall remain largely uncharacterized. Previous efforts to elucidate potential mechanisms have been impaired by the inability to directly visualize the flow of AH across this narrow layer. In the present study we developed a novel 3D in vitro model of aqueous humor dynamics and examined the formation of GVs in response to basal-to-apical flow across the endothelial monolayer. An accurate understanding of the underlying mechanisms that modulate outflow resistance at the inner wall would allow for the development of strategies to modulate intraocular pressure and potentially treat POAG. We have developed a novel microfluidicbased physiologically relevant 3D cell culture system which can be used as a research tool of a platform for drug screening with application to but not limited to glaucoma therapy. 93 b. Background i. Aqueous humor circulatory pathway Aqueous humor (AH) is a clear fluid and is the blood analog of the eye that provides nutrients and removes metabolic waste among other functions to maintain homeostasis of ocular tissues (171). AH is produced by non-pigmented epithelial cells of the ciliary processes from which it flows freely over the lens, through the pupil and into the anterior chamber. From here AH leaves the eye via two routes (a) The conventional outflow pathway via the trabecular meshwork and (b) The nonconventional/uveoscleral outflow pathway via the uveal meshwork (see (172)for a recent review). The conventional outflow pathway (Figure 3-1A) accounts for the bulk of AH drainage. In this route, AH exits the anterior chamber, flows into the trabecular meshwork across the endothelium of the inner wall and into Schlemm's canal (Figure 3-1B). Once in the canal AH enters the systemic venous circulation via connector channels that connect to the aqueous veins. From the aqueous veins AH flows into the episcleral veins located near the surface of the eye. AI Caalef W all InnerJC Trabecular M eshwork T Images copied from: (A) http://sierraeyeassociates.com/glaucoma.htm and (B) Ramos et al., J Glaucoma (2007) 16. 391-405 94 Figure 3-1: Conventional flow pathway of aqueous humor Diagram showing drainage of AH via the Conventional Outflow Pathway (A). AH produced by ciliary processes in the posterior chamber flows in to the anterior chamber and exits through the trabecular meshwork and Schlemm's canal. Cartoon showing the structure of the Trabecular meshwork, the route taken by AH as it exits the anterior chamber (B). ii. Aqueous Humor Outflow and Glaucoma Under normal conditions the rate of AH production (- 2.0-2.75 p1/min) is equal to the rate of drainage which ensures normal IOP levels. A malfunction in production or drainage mechanism shifts the normal equilibrium (10-21 mmHg) in IOP to hypertensive levels (> 21 mmHg) a known critical risk factor for glaucoma - a group of eye disease afflicting over 70 million people worldwide of which over 4 million are Americans (171). This elevation in pressures, which is characteristic of Glaucoma, ultimately leads to optic nerve damage and blindness. Furthermore, glaucoma is the second leading cause of blindness. Since there is no cure, there are only disease management strategies which include medication and/or surgery. Experimental studies have shown that the probability of having glaucoma increases with increased IOP levels (173). Current therapies are focused on lowering IOP. Consequently, the mechanisms regulating AH drainage is highly relevant. Glaucoma is an umbrella term for the many manifestations of the disease which include primary open-angle (POAG), angle-closure, normal-tension, congenital glaucoma and other types which are variants of open-angle and angle-closure glaucoma [Glaucoma Research Foundation]. Figure 3-2 shows AH flow pattern in the two main types. The most common form, POAG, is caused by a malfunction in AH drainage. 95 In POAG cases, there is a notable increase in the trabecular outflow resistance. This increase is resistance is attributed to cellular (e.g. increase expression of myocilin/TIGR and aB crystalline) and the associated morphological (e.g. trabecular beam thickening, increased sheath derived plaques and narrowing of intertrabecular channels) changes within the region (174), (175). Furthermore, POAG patients have been shown to have a reduction in the number of pore structures, important features in AH transport across the inner wall endothelium (176). rainage Drainage Canals uid Row Iris / Cornea Crnna" - \ \ ' Drainage Canals \ images: http://www.glaucoma.org/uploads/poag_illus.jpg Figure 3-2: Two main types of glaucoma, open-angle and angle-closure glaucoma Diagram showing AH fluid flow pattern in the two main types of glaucoma (A) open angle and (B) closed angle. Nomenclature "open" or "closed" is based on the configuration of the region between the iris and the cornea known as "Angle". iii. The Inner Wall of Schlemm's Canal 96 It is now widely accepted that major outflow resistance sites to AH include juxtacanalicular tissue (JCT) and the endothelium of the inner wall of Schlemm's Canal (177). However there is an ongoing debate over the individual contribution of the inner wall endothelium in regulating outflow facility (see (178) for an excellent review). Nonetheless, there is a growing body of evidence that suggest that the inner wall influences outflow facility (178). The continuous endothelium lies on a discontinuous basal lamina. Figure 3-3 A is typical scanning electron micrograph of the region and shows the connectivity between the IW and the JCT. Passage across the IW is believed to occur via outflow structure includes giant vacuoles and intercellular pores (Figure 3-3B, C). The regulation of such structures would consequently impact the hydraulic conductivity, outflow facility and ultimately IOP. U Images: Ethier C.R. Exp. Eye Res. (2002)74. 161-172 97 Figure 3-3: Inner Wall of Schlemm's Canal Images reproduced from published literature (178). (A) Cross sectional view of Schlemm's canal showing inner wall (B) En face view of Inner Wall (C) Cross sectional view of Inner wall showing Giant vacuole structure (GV) iv. Juxtacanalicular Tissue (JCT) The JCT (Figure 3-4) forms a loose connective tissue comprised of fibroblast-like cells surrounded by extracellular matrix (various collagens isoforms, laminin, fibronectin, elastin), matricellular proteins (thrombospondin-1 and SPARC) , growth factors (TGF-j2, CTGF, BMP7, BMP4) and proteoglycans (versican, syndecans)(excellent reviews by Tamm 2009, (179); Acott and Kelley 2008, (180)). 98 Schiemm's Canal Sciera Figure 3-4: juxtacanalicular Tissue Images and text reproduced from Acott and Kelley 2008 (180). Diagram of the outflow pathway and juxtacanalicular region. The lower portion shows a stylized view of the TM and the upper inset shows as expanded view of the JCT region. 99 v. Ex vivo aqueous humor outflow models Organ Perfusion Two main organ perfusion AH outflow models include the intact enucleated eye and anterior segments. These have been widely used by many laboratories because they more closely mimic the in vivo condition thus permitting easier extrapolation of experimental results. Intact Enucleated Eye. Perfusion of whole eyes is a well-established method dating back to the 1950's (181), (182). Donor eyes from different species (e.g. human, bovine, porcine, rabbit) are typically enucleated within 24 hours of death. To preserve freshness and ensure integrity of tissues, eyes are stored at 4'C in a moist chamber and used for AH perfusion experiments shortly afterwards (within a few days). Perfusion fluid typically used includes cell culture medium (183), Barany's solution (balanced salt solution containing glucose) (184). Eyes are perfused via the anterior or posterior chamber using small gauge needles or corneal fitting which is connected to external plumbing and pressure controls for quantitative evaluation of outflow facility (C). The value C is obtained from fluid flow rate (F) and steady state pressure (P) and is equal to the ratio F/P. For morphological studies, at the end of the experiment, tissues are dissected, processed and examined using confocal, light or electron microscopy. This model has been widely used in a variety of glaucoma motivated studies, however is not conducive to long-term studies which might be the case in some pharmacological studies where drug effect occurs over several hours. Anterior segment. The perfusion-cultured anterior segment model provides an alternative model for longer term eye perfusion studies. Figure 3-5 shows perfusion setup and flow schemes developed by Johnson and Tschumper (185). In their initial report, trabecular tissues remained 100 viable during cultures for up to 4 weeks. In this method, freshly enucleated eyes are bisected at the equator and the lens, iris and vitreous humor removed. The anterior segment is subsequently mounted to custom made perfusion devices and sealed to form a closed anterior segment. Cultures are maintained in a humidified culture chamber at 37 C and 5% C0 2 with constant perfusion rate to match physiological levels (through the trabecular 2.5 pl/min). Intraocular pressure is established and flows routed meshwork and into Schlemm's canal. Several investigators have subsequently used this model (186), (187). This setup has been valuable for screening drug candidates and to evaluate potential therapy that could target the trabecular meshwork to modulate outflow function. For example, TGF-beta2 treatment was shown to reduce outflow facility, by promoting accumulation of extracellular material and the length of inner wall available for flow (186). Interestingly, TGF-beta2 concentrations in AH of patients with PAOG is significantly increased (188). In another study, with a combination of Qdot labeling and RNAi silencing, the proteoglycan versican has been implicated as an important component which impacts outflow resistance (187). Despite its value, the anterior segment perfusion model has some limitations when tissue viability in considered, consequently the need for 'real time' indicator of tissue segment viability such as central corneal thickness has been recommended (189). Furthermore, this method does not permit in situ dynamic monitoring of cellular responses to chemical or mechanical perturbation. 101 U Images: (AB) Johnson D.H. and Tschumper R.C., Invest Ophthalmol.Vis. Scl. (1987) 28 945-953 and (C)http://www.mavoclinic.org/images/glaucoma-research-human-conventional-outflow-2col.g Figure 3-5: Ex vivo anterior segment perfusion model (A) Ex vivo perfusion device. (B) Device with enucleated eye. (C) (left) Schematic of perfusion setup and flow pattern, (right) pressure monitor. In vitro cell culture perfusion models - A potential to narrow current in vitro/ in vivo gap SCEC culture models provide an additional degree of flexibility by permitting studies of the inner wall endothelium in "isolation" from other tissues in the trabecular outflow pathway. In the late 1980's Perkins and colleagues reported a perfusion culture system, (190) (Figure 3-6A) which was subsequently used for simulating flow across the inner wall endothelium (191). In this study, isolated SCE were cultured on filter membrane which was housed in a custom designed flow 102 chamber. This setup permitted precise flow rate and pressure controls but was not compatible with real-time imaging. Recently, over two decades later, an improvement on this original concept was reported by Pedrigi et al (192)(Figure 3-6B). This latest design is compatible with real-time imaging; however continuous viewing of the monolayer is limited by the need to "refocus" and requires confocal microscopy. Despite these advance, the current models are limited by their ability for incorporation of physiologically relevant 3D matrix environment. The trabecular outflow pathway which includes the trabecular meshwork (uveal and corneoscleral meshwork), JCT and IW endothelium is a complex environment (excellent reviews (180), (179)). One of the strengths of in vitro models is that this inherent in vivo complexity can be simplified. Within this context, the studies of the inner wall in "isolation" are prime examples. Nevertheless, the ability to add layers of complexity is highly desirable in a sense "rebuilding" the in vivo environment which would allow synergistic interactions to be captured. For example, the three dimensional region that lies adjacent to the inner wall endothelium, the JCT, is in intimate contact and a local source of communication and could potentially impact its function relating to AH outflow. Cells within the JCT region are known to extend processed which form gap and adherens junction with endothelial cells of the inner wall (193). Likewise, endothelial cells form projections that extend in the JCT. Grierson concluded that "cells in the trabecular wall form a synchronized system" (193). The paradigm of synergistic interactions between cells, flow and ECM is gaining popularity, at least in current discussion (177), (180), (178), (194). 103 - - - - - - - - - - - - - - - - - - t Perkins et al., Invest. Ophthalmol. Vis. Sc. (1988) 29. 1836-1846. ------------------ Computer Direction ofj Perfusion Filter Membrane Cover Glass Cel71s Membrane Insert Adapter Objective - Objective Pedrigi et al., Exp Eye Res. (2011) 92.57-66. Figure 3-6: In vitro SCE monolayer perfusion model Images reproduced from (190) and (192). (A) Filter-based perfusion systems without continuous in situ imaging and (B) live cell imaging capability. Monolayers are cultured and perfused on a 2D filter surface. There is sufficient evidence which would support the need for in vitro models that bring together cells, matrix and flow in a single experimental platform. TM cells are known to response to mechanical stretching, laser irradiation and pro-inflammatory cytokines by secreting enzymes and cytokines that modulates both cells and ECM function within the conventional AH outflow pathway (195). For example, studies show that TM cells actively respond to mechanical stimulation caused 104 by fluid flow or stretch to alter gene expression and protein production which impact vascular permeability, cytoskeleton reorganization and extracellular matrix remodeling (196), (197) to name a few. Furthermore, SCECs alter gene expression and permeability when cultured in conditioned media obtained from to laser irradiated TM cells (198). On the endothelial side, Ethier et al., reports that Schlemm's canal endothelial cells in vivo are subjected to significant shear stress levels which impacts cell cytoskeletal remodeling (199). Additionally, SCECs produce factors that affect TM cell function (198). Despite the limitations of current cell-based models for shear stress, 3D matrix and potential paracrine or juxtacrine interaction on in co-culture studies current models have proven valuable for elucidating cellular and molecular mechanisms within the conventional outflow tissue. 105 c. Materials and Methods * (* more detailed protocols are included in the appendix section of this chapter) i. Cell Handling, Maintenance and Culture Primary Schlemm's canal endothelial cells and cell culture maintenance protocols were kindly provided by Dan Stamer (University of Arizona). Cell Isolation. hSCEC isolation protocol from cadaveric eyes was developed by Stamer et al. (200). Briefly, hSCECs were isolated by cannulating Schlemm's canal with a gelatin-coated suture (sterile nylon monofilament) and tissue segments containing sutures cultured for 3 weeks. The gelatincoated suture served as a substrate that permitted the infiltration of SCEC from the canal wall. Cell laden sutures were removed from the canal and cells expanded in tissue culture plates (Stamer et al., 1998, (200) provides additional details). Cell Culture. For experiments, frozen cell stock was thawed and seeded in T12 or T25 tissue culture flask. Cells were cultured on collagen coated (50 ig/ml) tissue culture flasks in Dulbecco's Modified Eagle Medium (DMEM, low glucose; 11885-084, Invitrogen, Chicago IL) supplemented with 10 % fetal bovine serum (FBS certified, 16000044; streptomycin-glutamine (10378-016; Invitrogen) and 1% penicillin- Invitrogen). Cultures were maintained in a humidified environment at 5% CO2 and 37'C. ii. 3D Matrix Since there were no known prior published studies of hSCEC cultured on hydrogels, experiments were conducted to evaluate hSCEC adhesion to 3D hydrogels. Furthermore cell attachment to hard substrates coated with ECM protein does not guarantee attachment and spreading on soft 106 compliable gels of a similar composition. For these studies rat tail collagen and Matrigel'" were selected as good candidates because of prior experience working with these gels which have supported the attachment of other vascular ECs. Liquid rat tail collagen type I (354236 or 354249 the high concentration product, BD Biosciences, Chicago IL) and BD Matrigel'" (354230; basement membrane matrix, growth factor reduced, BD Biosciences) pre-polymer solution was prepared according to product specifications. Gels formed from pure rat tail collagen type I, Matrigel or collagen/Matrigel blends were used. Blended gel-forming mixtures were prepared by combining collagen pre-polymer solution with freshly thawed Matrigel" to make different ratios by volume gels. Two criteria were used in evaluating the best options for a 3D matrix namely (1) ability to support cell attachment and monolayer formation and (2) permit microbeads passage (see bead tracer experiments below) with and without an endothelial monolayer on one gel surface. For cell adhesion experiments, hydrogels were form (100-120 p1/well, 30 - 35 minutes incubation at 370C) in glass bottom petri dishes (P35G-0-7-C; MATTEK CORP, Ashland MA). Gels were equilibrated with cell culture medium, hSCEC cell suspension and incubated at 370C and 5% C02. To observe cell dynamics during attachment, time-lapse images were recorded (Zeiss Axiovert 200, Carl Zeiss, Germany) otherwise cultures were maintained in humidified incubator for at least 6 hours and imaged (Nikon Eclipse Ti-U). iii. hSCEC monolayer formation and perfusion For perfusion studies, hSCEC monolayer was generated on 3D hydrogel (selected for cell attachment studies) in a microfluidic-based cell culture device. The capability of controlling the biochemical environment and flow was previously demonstrated as described in detail in (41). Briefly, the design includes two independent microfluidic channels that are separated by a central region - "gel cage" for housing injectable hydrogels (e.g. synthetic peptide, MatrigelT ", collagen) 107 allowing for three-dimensional (3D) matrices. This geometry permits the establishment of pressure gradients across the scaffold and small interstitial fluid flows through the 3D matrix. Human Schlemm's canal endothelial cell (hSCEC) monolayers were generated on 3D collagen/Matrigel matrix by perfusing single cell suspension through one channel, allowing the cells to settle along the collagen surface followed by 2-3 days of static culture. Perfusion Studies (additional details available in appendix). Two main types of perfusion studies were conducted to demonstrate proof-of-concept for (1) monitoring giant vacuole dynamics and (2) visualizing fluid hydrodynamic filtration patterns. Flows across the endothelial monolayer were generated at constant flow rate (0.3 pl/min) or known pressure (liquid column height limited by current choice of portable on-chip reservoirs -450 Pa) by using a programmable push/pull syringe pump (PHD 2000, Harvard Apparatus) or small fluid reservoirs respectively unless otherwise noted. At constant flow rate the equivalent rate per monolayer surface area was 50 pl/min/cm 2 which was selected to be within reasonable range compared to physiologic rates (190). For known pressure differential setup, the relative heights of the liquid columns in reservoirs connected to basal and apical channels were defined. In both setups, flow was generated in the basal-to-apical direction with respect to the monolayer which is similar to the in vivo situation where AH filters through the trabecular meshwork and flows across the endothelium of the inner wall. iv. Visualization of Giant Vacuole Dynamics Visual demonstration of GV formation and dynamics in live cells is critical for understanding mechanisms of formation. Multiple imaging modalities were evaluated for visualizing B-A flow induced GV-like structure formation including phase contrast and fluorescent microscopy. For live fluorescent imaging, hSCEC monolayers were labeled with live cell tracking dyes (Dil; D-282, 108 Molecular Probe, Eugene OR) prior to perfusion. Other live cell tracking dyes were also evaluated (see appendix). For long-term studies (several hours) monolayers were monitored on a microscope housed in an environmental chamber with CO2 levels and temperature controls. For phase/bright field monolayers were visualized on a Nikon Eclipse Ti-U (Nikon Instruments Inc., NY USA) with a DS-2MV (Nikon Instruments Inc., NY USA) camera using NIS Elements D image acquisition software. For higher resolution images a confocal microscope was used (Olympus FluoView 1000). Morphometric Analysis of Giant Vacuoles. Time-lapse fluorescent micrographs were analyzed using ImageJ macro to measure changes in GV cross-sectional area. To determine GV dimensions a built-in area selection tool was used to trace GVs ("dome" shaped structure on monolayer). Data from each image frame was recorded and reported as a function of time to demonstrate the dynamics of GVs. v. Evaluation of Fluid Hydrodynamic Filtration Pattern Epifluorescent (Nikon TE300 equipped with a Hamamatsu, ORCA-ER camera and OpenLab imaging software) and confocal (Olympus FluoView 1000) microscopy were evaluated for used in fluid filtration pattern studies and to track microbeads passage in relation to GV-like structures. Hydrodynamic filtration pattern would provide evidence for where fluid is being "funneled" through the monolayer. A bead tracer method similar to that used by Gong and colleagues (201) was used to label fluid filtration pattern in the collagen matrix upstream the cultured SCEC monolayers. With this method however, bead trajectories can also be tracked in situ which has not been done previously. hSCEC monolayer were formed on collagen or Matrigel/collagen blended gels as previously described. For these studies fluorescently tagged microbeads (200nm) were 109 used. Cell culture medium (unless otherwise stated) containing microbeads was used in reservoirs connected to fluidic ports leading to the basal channel (channel upstream of the monolayer). A pressure differential and B-A flow was initiated as previously described. Time-lapse images were recorded and fluorescent micrographs were analyzed in ImageJ (public-domain image processing software, U.S. National Institute of Health, Bethesda, MD) using built-in particle tracking macro. vi. Effect of pharmacological inhibitor Y27632 Current glaucoma treatment strategies involve lowering IOP levels. Medications to lower the pressure in the eye are typically administered topically in the form of eye drops, orally or intravenously. The common theme is to reduce the production or increase the outflow facility of the flow of AH. Consequently, the demonstrated capability for evaluating the effect of drugs on the function cultured hSCEC within a 3D culture environment would be of clinical relevance. For example, in vivo and in vitro studies with pharmacological inhibitor Y27632 was found to increase outflow facility in bovine, rabbit, monkey porcine eyes (201), (202). As a result, to demonstrate the capability for drug screening studies in our microfluidic-based AH outflow model, hSCEC monolayer were incubated with Rho kinase inhibitor, Y27632 (688000, EMD4 Biosciences, San Diego CA) prior to and during B-A perfusion. In this case, the effect of drug treatment was assessed by evaluating giant vacuole formation. For end point imaging, at the end of the experiment monolayer was perfusion fixed and stained for actin cytoskeleton (phalloidin) and nuclei (DAPI) (detailed below). vii. Post fixation Imaging To evaluate potential for traditional post-processing and ultrastructural visualization frequently used in morphological studies of tissue samples in perfusion studies with enucleated eyes and anterior chamber segment microfluidic samples were prepared for transmission electron microscopy (TEM). 110 Sample preparation for Light and Transmission Electron Microscopy (TEM). Briefly, glass coverslips were coated with a thin layer of PDMS (details below). Coated glass slides were used in place of glass coverslips which are used to seal the PDMS device. All other setup and experimental procedures remain unchanged. All samples were fixed and processed for TEM in situ by perfusion of fixative and solutions via microfluidic channels. At the end of experiment, samples were fixed with Karnovsky's fixative (2.5% glutaraldehyde and 2% paraformaldehyde in phosphate buffer, pH 7.4). Samples were post-fixed with 1% osmium tetroxide (Electron Microscopy Sciences, Hatfield, PA) and 1.5% potassium ferrocyanide (Fisher Scientific Company, New Jersey) for 1 hour, dehydrated in cold ethanol and embedded in Epon-Araldite (Electron Microscopy Sciences, Hatfield, PA). Samples embedded in plastic were removed from the PDMS device and re-embedded in EponAraldite. Ultrathin sections were cut with an ultramicrotome, counterstained with uranyl acetate (Fisher Scientific Company, New Jersey) and imaged by TEM (Model 300, Philips Eindhoven, The Netherlands). PDMS coated coverslips. To facilitate removal of fixed sample from microfluidic devices after embedding in plastic, glass coverslips were coated with PDMS (to use in place of glass coverslips). PDMS pre-polymer mixture was made by mixing 10 parts PDMS base solution with 1 part curing agent. A spin coater was used to create a thin layer of PDMS on top of the glass surface. To create thin coats, individual glass coverslips were positioned in the centre on the spin coater chuck, vacuum sealed and a small droplet of the degassed PDMS mixture deposited on the centre of the coverslip. To create a uniform flat coating, excess material is spun-off (cycle 1: x seconds at x rpm and cycle 2: y seconds at y rpm) and PDMS-coverslips baked in the oven at 80'C for at least 2 hours. 111 Immunocytochemistry for Confocal Microscopy. For high resolution fluorescent visualization monolayers in flow samples were perfused-fixed and counter-stained for examination with confocal microscopy. PFA fixed samples (4% PFA) were rinsed twice with 1X PBS, permeabilized with 0.1% Triton-X and counterstained with 4', 6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich, Atlanta, GA) to identify nuclei and phalloidin (Invitrogen, Chicago, IL) to label F-actin. 112 d. Results i. 3D Matrices for hSCEC culture: Collagen type I and Matrigel Unlike previous studies, here isolated hSCEC are grown on 3D hydrogels instead of 2D filter membranes. Criteria I: Cell attachment and monolayer formation. To evaluate potential matrix candidates for monolayer perfusion studies, hSCEC were cultured on collagen and Matrigel'"-based gels. We found that hSCEC attach and spread on collagen, Matrigel and collagen/Matrigel blends. However, monolayers formed only on pure collagen and collagen/Matrigel blended hydrogels. The main protein components of Matrigel' are laminin and collagen IV (61%, 30% respectively; BD Biosciences website). For integrin mediated adhesions the corresponding integrin pairs are alp1 or a2p1 for collagen and a3pl, a6p1 or a6p4 for laminin. Recently, cultured hSCEC were shown to abundantly express collagen-specific (a2) and laminin-specific (3, a6 and p4) integrin subunits (203). On pure Matrigel hydrogels, cells would attach and spread initially but would form clusters of cells due to subsequent detachment (Figure 3-7). Presumably, the observed response is due to difference in gel stiffness. This notion is supported by the observation that cells retain spread morphology on glass surfaces having a thin coating of Matrigel and published reports demonstrating that cultured hSCEC express the necessary receptors to support integrin mediated adhesions (203). Other cell types, for example NIH3T3 fibroblast and bovine aortic endothelial cells (BAEC) exhibit substrate stiffness dependent cell spreading response; where the degree of spreading as measure by surface area increases with substrate stiffness (158). However, this response was found to be eliminated when cell-cell contacts were established. Here, hSCEC spreading and attachment was not improved by increased cell density and by establishing 113 subsequent cell-cell contacts (Figure 3-7, Figure 3-8) Based on these studies a decision was made to use pure collagen and collagen/Matrigel' blended gels. Figure 3-7: Adhesion dynamics of hSCEC to pure Matrigel hydrogels Micrograph of hSCEC cultured on pure Matrigel gels. Sequences taken from timelapse movie recorded after single cells suspension of hSCEC were seeded on gel. (I.) Cells are initially rounded. (II.) Cells begin to elongate, spread out onto matrix and make cell-cell connections. (III. - V.) Cell sheet/monolayer contracts (VII.) Cell spheroid - cells detach from matrix. Collagen/Matrigel'" blended gels were qualitatively better for promoting longer-term cell attachment at higher ratio of collagen (Figure 3-8). Furthermore, preliminary experiments suggests hSCEC barrier function to high molecular weight dextran (150kDa; Invitrogen) was higher for 75:25 compared to 50:50 collagen/Matrigel blended gels as assessed by concentration 114 difference across the monolayer. In subsequent experiments pure collagen and collagen/Matrigel" blended gel at 75:25 ratio were used. Collagen/Matrigel Blended gels Figure 3-8: Adhesion of hSCEC to Collagen/Matrigel Blended gels Micrograph of hSCEC cultured on pure collagen, Matrigel and collagen/Matrigel blended gels. Label (0:100) indicates the ratio by volume of collagen to Matrigel. (Top row) Pure gels, cells are rounded on pure Matrigel whereas on collagen they are spread. (Bottom row) Blended gels, progressively better attachment and spreading. Criteria II: Tracer bead passage (additional details in appendix). Bead passage depends on matrix density and pore size. Consequently to conduct filtration pattern experiments a trade off in matrix concentration/density (correlated to matrix stiffness) was necessary, since hSCEC adhesion is better (see appendix: Figure 3-16; spread area of gels of different concentration) on stiffer gels whereas easy bead passage (see appendix: Figure 3-20, Figure 3-21) requires less 115 dense (correlates with lower stiffness) gels. For pure collagen gels concentrations of 2.5-3.0 mg/ml both accommodated monolayer formation and easy passage and traceability of 200nm beads with and without a monolayer. ii. Primary Schlemm's Canal endothelial cells on 3D matrix as a model for AH outflow and formation of Giant Vacuole-like Structures 1. Variability of hSCEC response on 3D matrix A majority of the microfluidic perfusion experiments and reported results are for hSCEC monolayers formed on collagen gels. Prior to perfusion, monolayers where visualized with phase microscope to examine cell attachment and completeness of monolayer. Interestingly, in some cases hSCEC monolayer were not quiescent and extended membrane projections (Figure 3-17) several hundred microns penetrating the underlying 3D matrix. While seemingly unfavorable, in vivo inner wall endothelial cells and cells within the underlying JCT region are known to extend processes which form gap and adherens junction with each other (180). Furthermore, hSCEC and human trabecular meshwork cells (HTM) cultured in vitro form cell processes that extended into filter membrane below the monolayer (190), (191). In more extreme cases, single hSCEC migrate from monolayer into the 3D matrix, which present a challenge for 3D culture models and might be a sign of differentiation while in culture (see appendix for additional details). Recently, reports from the Stamer lab (hSCEC source) alluded to this in the context of laminin expression profile. They observed that the "immature" protein (laminin-332) is expressed by hSCEC and TM cells cultured in vitro but not expressed in situ in the human outflow tissue (only the "mature" version laminin511 is present) , from which they concluded that this marker may reveal that cultured cells are in 116 "an angiogenic state" (203). Their observations and conclusion is consistent with the migratory phenotype that is observed in some hSCEC. U Human enucleated eye perfusion model E Microfluidic -based AH perfusion model Image: Hann et al., Invest Ophthalmol. Vis. Sci. (2005) 46. 1-7 current thesis work current thesis work Figure 3-9: Comparison of Giant Vacuole morphology from in vivo and in vitro studies Micrographs of Giant Vacuole structures obtained from (A) human enucleated eye perfusion model (image reproduced from Hann et al., 2005) and (B, C) microfluidic-based 3D cell culture AH perfusion model. Here, hSCEC monolayers were formed and perfused with a reservoir pressure setup as described in Materials and Methods (with further details in appendix). In (B) cells were stained with a Dii and image taken while cells were alive. (C) Fixed samples stained for actin (Red, phalloidin) to visualize cytoskeleton and DNA to identify the cell nuclei (Blue, DAPI). 117 2. Cultured hSCEC monolayer on 3D matrix form giant vacuole-like structures Stable monolayers perfused via constant flow rate or pressure differential in the basal-to-apical direction remained attached to the gel and formed giant vacuole structures (Figure 3-10, Figure 3-11). This is consistent with previous reports for hSCEC cultured in vitro on filter membrane (191), (192). These structures can readily be observed with a light or fluorescent microscope. Furthermore, the observed morphology is similar to those in previous studies (Figure 3-9), featuring a "smooth-walled, round, oval, reniform or crescentic spaces" (184). These pressure sensitive structures are visible on SCEC monolayers as early as 30 minutes of B-A perfusion; however there is an inherent variability in responsiveness to B-A perfusion between SCEC from different donors as was also observed by (192). Fixed samples of GVL structures stained for actin cytoskeleton shows a diffuse labeling pattern at base and faint labeling along the "dome" (Figure 3-9C) which could be indicative of cytoskeletal remodeling in that region. These results demonstrate that our microfluidic-based AH outflow model, like others is capable of replicating in vivo observation with regards to GV formation on inner wall. iii. Real-time Visualization of Giant Vacuole Dynamics Previous models have been limited in their ability to continuous monitor GV formation during the course of an experiment. Giant vacuole formation and dynamics was observed under constant velocity and constant pressure conditions. Figure 3-10 shows the growth of typical GV-like structure over a 15 min interval. Longer term GV dynamics are shown in Figure 3-11. For GV size quantification, cross-sectional area was calculated in a fixed plane of view which does not take into account potential movement of GV in or out of the plane of view during the course of an experiment. High resolution time-lapse confocal images, Figure 3-11 shows potential details of GV-like 118 structure formation documenting potential initiation, growth and fusion phases. Here smaller structures are formed and subsequently coalesce to form larger structures. Also as expected, retrograde perfusion results in the partial collapse of these structures (appendix: Figure 3-19). Figure 3-10: Giant Vacuole-like structure dynamics: Perfusion at constant flow rate Micrograph of hSCEC monolayer showing Giant Vacuole-like structures (A). Quantification of shortterm dynamics of GV (B). Here images were taken on Zeiss Axiovert 200M confocal microscope at 568nm. 119 1200 Growth 8 00 - -! Fusio0 S600 - S400 - U 200 - 0 Tim (mintes 100 200 300 Time (minutes) Figure 3-11: Giant Vacuole-like structure dynamics: Perfusion at constant pressure Confocal micrographs showing Giant Vacuole-like structure formation (A (I.) - (VII.)). Monolayer labeled with Ca 2+ dye. Initial signs of GV formation evident by subtle changes in membrane (boxed region in II.). GV emerge (III.), grow (IV.) and fuse (VI.) to form even larger structures. Quantification of GV dynamics (B), sudden increase in area is due to GV fusion. iv. Pharmacological Inhibition In vitro screening of potential outflow regulating drugs would be beneficial for the development of new therapies while investigating contributing mechanism at the cellular and molecular levels. For example, the disruption of cytoskeleton or cytoskeletal contractility with pharmacological inhibitors including cytochalasins (disrupts actin cytoskeleton), latrunculins (disassembly of actin 120 filaments), H-7 or Y27632 (inhibits actomyosin-driven contractility) has been shown to reduce aqueous humor resistance and intraocular pressure (204), (201), (202). To demonstrate our model capability for investigating drug effect with cellular level details Y27632 was used. In preliminary experiments, this Rho kinase inhibitor promotes GV-like structure formation (Figure 3-12) which would be consistent with the in vivo observation of an increase in outflow facility following treatment and increase GV formation in enucleated bovine eye model (201). These results demonstrate that our microfluidic-based AH model can be used to explore new glaucoma drug therapies designed to target the inner wall endothelium and would complement current in vivo or traditional ocular perfusion in vitro investigations by providing additional details at the cellular level. without Y27632 with Y27632 Figure 3-12: Effect of Y27632 on giant vacuole-like structures Confocal micrographs of hSCEC monolayer (A) without and (B) with Y27632. Fixed samples were stained for actin (Red, phalloidin). 121 v. Hydrodynamic Filtration Pattern Previous studies to label aqueous humor filtration pattern across the inner wall has been done using enucleated eye perfusion models (183), (201). A characteristic, segmental or non-uniform flow pattern is typical of the TM due to regions of preferential flow (183). However details of the underlying mechanism remain unclear. Current in vitro outflow models (191), (192) are not conducive to these experiments because they lack a 3D matrix. Furthermore, in situ bead tracking is limited due to design-related imaging constraints (the need to refocus since beads would move out of viewing plane). With the current model, beads and monolayer can be observed/monitor at single focal plane without the need for refocusing. Proof-of-concept experiments done with our current setup, demonstrates both uniform and non-uniform tracer labeling patterns were observed. Interestingly bead accumulation upstream of monolayer seems to least in regions where GV-like structure is present (Figure 3-13) or near cell-cell junction (thinnest regions of monolayer) (Figure 3-13). Moreover, with this technique single 200nm tracer beads were also observed crossing hSCEC monolayer near giant vacuole structures (Figure 3-14A). In some instances beads were observed lingering Figure 3-14 A(ii) in regions where they co-localized with GV-like structures before they were released Figure 3-14 A(iii) into the fluid channel. Furthermore bead trajectories which indicated the path taken by fluid can be reconstructed Figure 3-14B. 122 'IU Monolayer with microbeads Microbeads C Figure 3-13: Variation in tracer labeling pattern Confocal micrographs showing microbead tracer labeling pattern upstream of hSCEC monolayer. (A-C) Images taken of live cells stained with Ca 2 dye. (Arrows) regions with least bead labeling, that co-localize with Giant Vacuole-like structures (**). 123 Figure 3-14: Bead Traces Confocal micrograph showing microbeads traversing hSCEC monolayer in the vicinity of Giant Vacuole-like structure ((A) I. - (A) IV.). Boxed area, region of interest showing individual bead when trapped (II.) then released (III.) into fluid stream. (B). In a separate device, shown are individual traces made by microbeads in gel upstream of hSCEC monolayer in a region close (I.) or far (II.) from the monolayer. Time-lapsed fluorescent micrographs where taken of the gel region and traces generated in ImageJ using a built-in macro. vi. Ultrastructure by new TEM method for microfluidic samples Light and transmission electron micrographs can be successfully prepared from microfluidic samples despite the small sample dimensions (Figure 3-15). This capability is important because TEM permits significantly higher resolution compared to light microscopes. For example, cellular pores and details of GVL structures could be visualized with greater details. As a proof-of-concept, 124 monolayers cultured under static conditions were processed for examination via TEM. Detail features of cell layer and underlying matrix are preserved (Figure 3-15 A-E) showing different junctional morphology, intercellular organelles and matrix fibers. TEM preparation of hSCEC (Figure 3-15B) and BEC (Figure 3-15C) are shown. 125 *t U 4P Figure 3-15: Light and Transmission Electron Microscopy Light micrographs of gel region with an EC monolayer (A). Transmission electron micrograph of hSCEC and BEC monolayers (B-E). Structure resembling a pore between two cells (B inset). (C, D) Cell-cell junction morphology. (E) Higher magnification showing details of cell cytoplasm. 126 e. Discussion and Conclusions Intraocular pressure (IOP) remains the only treatable risk factor for glaucoma. Pharmacological treatment is a popular alternative to ocular surgery or laser treatment and work by modulating aqueous humor production and/or drainage. As a result, a fundamental question with clinical relevance pertains to the factors that regulate AH drainage. For this reason, in vitro models systems have proven and continue to be invaluable tools for investigating details of the physiology of the trabecular meshwork and aid in the advancement of new therapies. However, there exists a gap between current in vitro models and in vivo native tissue which provides an opportunity for further model improvements. We developed a new in vitro cell culture-based model and conducted proof-of-principle experiments which demonstrate its applicability for investigating AH outflow dynamics. A key feature of the in vivo inner wall endothelium, giant vacuoles, was replicated in our system and its dynamics could be monitored in real-time. Furthermore the mechanism of aqueous humor outflow dynamics across the inner wall remain largely uncharacterized however with our system it is now possible to label fluid path as demonstrated by hydrodynamic filtration pattern experiments. Consequently, for the first time fluid flow can be visualized in a model of the inner wall endothelium in real-time thus providing a unique tool for future investigations. Furthermore, drug effects can be examined. Treatment with rho-associated kinase inhibitor, Y27632 seems to promote giant vacuole formation. This is consistent with recent finding, where cells exposed to Y27632 exhibited a dose dependent cell softening (205). Presumably cells that are softer are more deformable and would more readily form giant vacuole structures. These 127 observations along with in vivo finding of increased outflow facility following Y27632 treatment are consistent. Gap in Replicating the Inner Wall Microenvironment Unlike previously reported models, here hSCEC are cultured on 3D hydrogels gel instead of 2D filter membranes for perfusion. It is widely accepted that in vitro culture dimensionality is important and that 3D cultures narrows the gap between in vitro models and live tissue (206), (124). Of particular importance is the region JCT region that lies adjacent to the IW endothelium can only be modeled in cultures with 3D capability. Consequently, this aspect of the trabecular outflow pathway cannot be readily addressed with current models (191), (192). Moreover, independent studies taken together highlights the various synergistic interactions that occur with the trabecular outflow tissue that ultimately impacts the regulation of AH outflow dynamics (177), (180), (178), (194), (193), (195), (196), (197), (198), (199). Following this line of reasoning, our microfluidic-based platform sets the stage future investigations where an integrative approach can be taken to investigate the physiology and pathophysiology of trabecular outflow tissue. Consequently, this study is a nontrivial improvement to currently available cell-based perfusion models (191), (192). Real-Time Visualization of Giant Vacuole Formation and Hydrodynamic Filtration Pattern Real-time visualization is a coveted capability when designing in vitro models of biological systems. In this case, the in situ visualization of the formation giant vacuoles by hSCEC is important for investigating mechanism of formation. To our knowledge, this was only achieved recently by one other group (192) , where they used a 2D filter-based perfusion setup and cells are visualized en face. With this system they were able to readily capture GV dynamics as assessed by lateral movement and growth of "void" in the plane of the monolayer. With our system, however the 128 natural viewing plane produces a cross-sectional view of the monolayer and subsequent GVs that are formed in response to a basal-to-apical pressure gradient. This view is advantageous because the entire thickness of the monolayer can be visualized at one plane which would provide greater details on the mechanism of GV formation. Studies of giant vacuoles suggest that these pressure sensitive structures are indeed markers for region of active flow across the inner wall (184). In agreement with other studies, cultured hSCEC cultured monolayer forms giant vacuole-like structures in response to basal-to-apical perfusion. Furthermore, tracer beads were observed crossing the endothelium in the vicinity of giant vacuole structures. Time-lapse microscopy studies suggest that giant vacuoles might not a ballooning of the inner wall endothelium as previously thought by some in the field, since in the giant vacuoles examined gross cell detachment was not evident. But instead, might be due to subtle changes at the basal surface of the cell. Collectively, these proof-of-concept experiments demonstrates that this platform presents a promising tool for investigating the effects cellular and molecular mechanisms which are responsible for modulating aqueous humor outflow facility. 129 f. Appendix: Supplementary Material hSCEC Spread Area on Different Concentration Gel 3mg/ml collagen 6mg/ml collagen I 0.25 B. 0.2 CZ < 0.15 0.1 0.05 0 1 mg/mI 3 mg/mI 6 mg/ml Concentration of Collagen Gel Figure 3-16: hSCEC spreading on collagen gels of different concentration (A) Fluorescent micrographs of hSCEC on pure rat tail collagen type I of different concentrations (1, 3 and 6 mg/ml). (B) Quantification of cell spreading on gels of different concentration. Fluorescent micrographs were analyzed in ImageJ; average cell area (arbitrary units) was calculated for cells on gels of different concentration. Arbitrary cell area increases with increased gel concentration. 130 Potential Challenges of 3D Culture? Figure 3-17: hSCEC monolayer extends membrane projections in underlying matrix Micrograph showing cross-sectional view of hSCEC monolayer on rat tail collagen type I gel (6.0 mg/ml) cultured in microfluidic device. Filopodia/Invadopodia-like membrane projections extend from hSCEC monolayer (at top of image) into the underlying collagen matrix to form branched structures. 131 Expression of junction Proteins The expression profile of junction proteins (adherens, gap and tight junction) in cultured hSCEC was analyzed by immunofluorescence. Fixed hSCEC monolayers were prepared for immunocytochemistry as previously described. A summary of the results is shown in Figure 3-18. 132 Jun1lctionl Pr~oteinsI DAPI] VE - Cadherin PECAM E - Cadherin Claudin Connexin 43 zo - 1 Figure 3-18: Expression profile of junction proteins in cultures hSCEC Fluorescent micrographs of hSCEC (on glass) immunolabeled with a panel of antibodies for cell-cell junction proteins (VE-Cadherin, PECAM, E-Cadherin, Claudin, Connexin 43 and ZO-1). 133 Pressure gradient sensitivity of giant vacuole-like structures Figure 3-19: Pressure gradient sensitivity of GVL structures Micrographs showing the dynamics of GVL structures in response to the direction of the applied pressure gradient and the resultant fluid flow across the hSCEC monolayer. White arrows indicate the direction of the pressure gradient (arrow's tail-to-head corresponds to high-to-low pressure). (A) Micrograph showing GVL structures (indicated by asterisks) formed by hSCEC in one region of microfluidic device. Here pressure gradient and flow directions (basal-to-apical) are similar to the in vivo condition. (B) Micrograph showing the same region in (A) when pressure gradient and flow direction are reversed. Asterisks label the position of one of the GVL structures that have disappeared/collapsed in response to change on pressure gradient. Bead size selection Preliminary experiments were conducted to determine bead size and density for use in tracer bead experiments for determining gel permeability and fluid hydrodynamic filtration patterns. Fluorescently-tagged microbeads of different sizes (20 nm, 100 nm, 200 nm and 500 nm) were evaluated for ease of passage and traceability first in gels (i.e. different collagen concentrations and collagen/Matrigel blends) without a monolayer and finally with an hSCEC monolayer. Fluid flow through gels was established with reservoirs (see pressure setup details below). Low resolution phase and fluorescent micrographs from a typical experiment is shown in Figure 3-20. 134 Fluorescenit Imag1(es (11. - VI.) Before perfusion with beads After perfusion with beads Bead solution VI. vof a W Figure 3-20: Evaluation of bead passage through 3D matrix in "gel-cage" region Phase (1) and fluorescent (II - VI) micrographs showing the "gel-cage" region of the microfluidic device. Micrographs illustrate the sequence of steps during a typical preliminary experiment to evaluate bead passage and suitability for subsequent studies (e.g. measuring gel permeability in situ, labeling hydrodynamic filtration pattern in the case when a monolayer is present). Micrograph(s) taken (I) before and (III-VI) after perfusion with media containing beads. (VI) Inset, higher magnification showing typical bead trajectory in micrographs taken at high exposure times. For quantitative experiments higher resolution images (> 20X objective) of gel region is necessary, the inset of Figure 3-20 VI shows typical trace that is obtained at higher magnification. Bead sizes of 20 nm and 100 nm were found to pass freely through 3.0 mg/ml collagen gels but individual beads were not easily traceable whereas 500nm beads frequently got trapped in the gel (Figure 135 3-21). Based on the result from these experiments 200nm bead size was selected for subsequent experiments. Figure 3-21: Evaluation of bead passage through 3D matrix Fluorescent micrographs showing microbeads in gel region of microfluidic device (I. -III.). Consecutive snap shots showing 500 nm microbeads trapped in 3.0mg/ml collagen gel as a result this bead size would not be suitable for bead tracer experiments. Scale bar 100 [m. 136 2E-1 3 1.8E-13 1.6E-13 1.4E-13 S1.2E-1 3 I *OW ASOW 40M 4NOW 1E-13 8E-14 CL 6E-14 4E-14 2E-14 0- 0 2 mg/ml 2.5 mg/m I 4 -- 6 mg/ml 75/25 blend Figure 3-22: Experimental estimation of gel permeability Graph showing gel permeability as a function of concentration for pure rat tail collagen type 1 (2, 2.5 & 6 mg/ml) and collagen/Matrigel" blended gels (75/25 blend, where ratio indicate percent by volume; 75% pure collagen (6.0 mg/ml) and 25% Matrigel" (undiluted)). Permeability was determined experimentally using a bead tracer method (see section 4.6 for additional details). (Inset) Micrographs of "gel-cage" during a typical bead tracer experiment and higher magnification image showing a single trace obtained for images taken with high exposure setting. 137 g. Appendix: hSCEC Maintenance and Microfluidic Protocol Human Schlemm's canal endothelial cells (hSCEC) Maintenance (Original protocols for general hSCEC culture were provided by Kristin Perkumas from Stamer Lab at University ofArizona. This protocol was modified to include additional details and notes.) Flasks containing proliferating cells were shipped overnight. Upon arrival cell medium was refreshed, flask incubated and subsequently expanded to generated sufficient cells for future experiments. Freezing down hSCEC cells Only healthy looking cells should be frozen down. Cells should be at approximately 80% confluence, look healthy and not older than passage 3. Examine cells to make sure they are not too large or contain a lot of vesicles. Procedure: 1. Remove media and replace with PBS (w/o Ca 2+ or Mg 2 +). Gently, rock flask to wash cells. Aspirate PBS. 2. Add warm trypsin to cells in flask, approximately 0.5ml for a T25 flask. Tilt flask back and forth so that entire cell surface is covered with trypsin. Cells generally detach quickly, as a result you do not need to incubate at 37C. Monitor cell detachment with microscope. Tap flask gently to help dislodge cells that remain attached. Do not wait too long in an effort to recover every cell from the flask. Work quickly; you want to have vial cells at the end of the freezing protocol. 3. Add 9.5 ml of warm cell culture medium (DMEM supplemented with 10% FBS and 1x PSG) to cells/trypsin suspension. 4. Transfer contents of flask to a 15ml tube and centrifuge for 5 minutes at 600 rpm. hSCEC cells pellet very easily. 5. Spray down tube with ethanol and return tube with pellet to sterile hood. Be careful not to knock the tube as this might dislodge your pellet and you could potentially lose it. 6. Carefully aspirate all media/trypsin supernatant. 138 7. Resuspend cell pellet in chilled 900 pil of FBS. To generate a uniform suspension without need for excessive pipetting add only 300 [d to cell pellet and gently tap tube to "break up" pellet. Add the remaining 600 [il and pipette gently. 8. Transfer cell suspension cryo vials that contain 100 il of DMSO. Generally you will be freezing down multiple flasks which would require that multiple vials containing DMSO are ready for this step. 9. Cap vials and mix gently. 10. Place vials on ice for 5 minutes. 11. Transfer vials to freezer box and store at -20 C for 4 hours. Move freezer box and cryo vials with cells to -80'C for 4 hours and finally to liquid nitrogen storage tank. Thawing hSCEC cells (You may want to thaw in to a T12 if you don't have a lot of cells) Procedure: 1. Before removing frozen cell stock from liquid nitrogen storage warm cell culture medium (DMEM supplemented with 10% FBS and 1x PSG) to 37C. 2. Add 5ml of medium to collagen coated and labeled flask. 3. Remove cryo vial from storage, warm vial in a water bath at 37 0C until contents of the starts to melt. You should see an ice pellet surround by liquid. (Take care that the lid is not below the water level to avoid any chance of potential contamination). 4. Spray and wipe down vial with ethanol. Return to sterile hood. 5. Add 1ml of warm media to cell suspension and ice pellet (this should thaw the remaining ice pellet). 6. Transfer contents to the prepared T25 flask containing warm cell culture medium (you might want to keep the flask in the incubator until you reach this step). 7. Rinse the cryo vial with another 1 ml of warm medium and add to flask with cells. 8. Incubate flask containing cells at 37"C and 5% CO2 for 1.5 to 3 hours. After approximately 2 hrs check flask to monitor cell attachment. They should look like fried eggs initially. It is important to be GENTLE and not disturb cells during this attachment process. 9. Once a majority of the cells have started to attach (- 2hours) remove the thawing media and transfer to another flask to allow other cells to attach. Add warm cell culture media to 139 cells in the original flask. Do not pipette media directly over cells, instead gently run media down the side of the flask then return flask. 10. Return both flasks to the incubator. (In most cases the cells in the second flask are not as viable) PDMS Devices Fabrication Materials and Equipment 1. 2. 3. 4. 5. 6. 7. 8. SU-8 Wafer (attached to bottom of oven safe Petri dish) Sylgard 184 Silicone, PDMS Kit (base and curing agent); cat# 184 SIL ELAST KIT 0.5kg Degasser w/ house vacuum connection line Clean Disposable cup & Stirrer Digital scale Oven Razor/Scalpel PDMS corer (35mm diameter) Procedure 1. Weigh PDMS base and curing agent in disposable cup at 10:1 ratio. 2. Mix base and curing agent vigorously and thoroughly. A well-mixed batch should have a lot of bubbles. 3. Degas mixture in vacuum sealed degasser. 30 minutes should be sufficient for 110 g mixture (i.e. 100 g base plus 10 g curing agent). It might be necessary to vent chamber a couple times to prevent PDMS mixture from overflowing. During the first 5 minutes, mixture will foam over. 4. Pour degassed PDMS mixture over SU-8 wafer to a depth of approximately 0.8-1.0 cm (thickness does not need to be exact, however thicker devices are much easier to handle and ensures delamination does not occur when attaching external plumbing). 5. DO NOT return wafer and PDMS mixture to degasser. 6. Leave wafer and PDMS out on bench for a few minutes (-5 minutes should be fine). Surface bubbles equilibrate quickly. You may use a tooth pick (lab supplied) or sharp point to dislodge any bubbles that may be stuck to small pattern features. 7. Bake PDMS in oven at 80 C for at least 2 hours. 8. Remove the cured PDMS from the oven and leave it out on the bench to COOL. 140 9. Once cooled use a scalpel to cut out PDMS slab. 10. Punch out individual patterns with PDMS corer. This should be done on a clean surface with pattern side up, to minimize dirt and debris from sticking to pattern surface. Keep individual device in a clean container (large Petri dishes work well) with pattern side facing upwards. 11. Core ports as needed (to avoid getting dust in ports, core holes when you need the devices). Additional Notes: 1. Do not fabricate and store PDMS to far in advance. Old devices tend not to bond to glass or PDMS-coated coverslips very well. 2. Use a sharp corer to punch out ports. A dull corer will cause PDMS to tear and may cause leaks when connecting external plumbing (reservoirs, tubing etc.) Cleaning and Sterilization Material and Equipment 1. Individual PDMS devices (do forget to punch out ports) 2. Scotch tape 3. Large Beaker 4. Water (Millipore or from DI line) Procedure 1. Clean PDMS surfaces thoroughly with scotch tape. Ensure surfaces are free of dust/particles. 2. Place PDMS into large beaker containing water, cover with aluminum foil. You may also prepare "humidity box" which will be needed during hydrogel loading/gelation process. Add -400mL of water to empty pipette boxes (1000 pl pipette tip box with tray works well - fits 6 devices). 3. Place beaker with PDMS and "humidity box" into secondary bin and autoclave for 20 minutes on wet cycle. 4. At the end of wet cycle, remove bin, promptly drain water off PDMS devices and transfer to empty pipette tip boxes (NOT "humidity boxes"). Ensure pattern side face upwards. Set 141 "humidity box" aside to cool then transfer to incubator (HOT humidity box directly from the autoclave will disturb the set point temperature in the incubator). 5. In preparation for second autoclave cycle, load glass cover slips into clean empty pipette box. Place pipette tip boxes with PDMS devices and glass coverslips in secondary bin and transfer to autoclave. Run dry autoclave cycle (20min/15min). 6. At the end of dry cycle, place pipetted tip boxes in laminar flow hood in tissue culture room. Open lids and let devices and coverslip cool down for approximately 10 minutes. Additional Notes: 1. After the wet autoclave step do not leave devices to sit in water for a long time. The PDMS devices will absorb water and appear cloudy. Do not proceed to gel loading step with cloudy devices as this will make the gel loading step difficult. Dry out device in oven; maintain sterile seal. PDMS Surface Treatment Material and Equipment 1. Plasma cleaner w/ vacuum pump setup 2. Slides (tray for holding devices during plasma etching) 3. PDMS devices (cleaned and sterilized) 4. Tweezers 5. Ethanol 6. Timer 7. Gloved hands Procedure 1. Turn on plasma cleaner, spray and wipe down outside of chamber (NOT INSIDE). Spray and wipe down working area and tweezers. Spray and wipe down trays for holding devices. 2. Etching cycle is 2 minutes pump down followed by 2 minutes of irradiation with purple/pink air plasma. Run one cycle with trays to warm up the machine. At the end of the cycle, vent chamber quickly. 142 3. Remove trays and load devices with pattern side facing upwards. Place trays with devices in plasma etcher chamber (Do not overcrowd chamber). Run etching cycle, 2 minutes pump down followed by 2 minutes irradiation with plasma. Check plasma color periodically to ensure you have a stable color. 4. At the end of each cycle, vent chamber and quickly transfer devices back to pipette tip box. 5. Repeat etching cycle until finished. Gel Loading by Macro- or Microinjection Materials and Equipment 1. Microinjection System (Computer monitor, Microscope (Digital Blue Toy microscope), Glass slide-PDMS holder, 3 axis (xzy) micromanipulator with microsyringe holder, magnetic base and plate) 2. Hydrogel pre-polymer mix on ICE 3. Microliter syringe (already cleaned) 4. Plasma etched/treated PDMS devices 5. Sterilized glass coverslips 6. Cell culture grade water 7. "Humidity box" (just out of 37C incubator) Procedure 1. Setup microinjection system in the hood, start microscope program and check for a live feed. Spray and wipe down surface a knob with ethanol. 2. Flush needle with cold cell culture water to ensure no bubbles are in the needle. 3. Position PDMS device on microscope stage with pattern surface facing upward. Focus and center the "gel-cage" by monitoring the live feed on the computer monitor. 4. Load microliter syringe with hydrogel pre-polymer mix and discard (eppendorf tubes are handy for this purpose). Repeat this a couple times. 5. Load microliter syringe with pre-polymer mixture and position the syringe tip above the PDMS gel-cage in preparation for gel loading. 6. Generate a small droplet of pre-polymer mixture at the tip of the needle, and fill gel cage drop wise. For initial drop, lower syringe needle until the droplet makes contact with the 143 PDMS surface (center in "gel-cage"); fill by carefully creating small droplets and bringing them to the surface by maneuvering the manipulator xyz axis/joystick as necessary. 7. WORK quickly; this becomes second nature with practice. 8. Lower microscope stage, remove tray with device and seal channels and "gel-cage" using a glass coverslip. Push down on coverslip to ensure a good seal, starting at the edges of the device. 9. Transfer sealed devices loaded with pre-polymer mixture to the "humidity box". Repeat steps 3, 5-9 for a couple more devices then incubate at 37 C for 30-35 minutes. If you experience significant resistance while dispensing droplets perform steps 2 and 4 before loading mixture into devices. 10. Following gel polymerization, remove humidity box containing device from the incubator and transfer to hood. Wipe off any moister from glass slide surface and transfer individual devices to a clean petri dish (large Petri dish works well for when handling multiple dives simultaneously). 11. Inspect gels under microscope, fibers should be visible and is an indication of a well formed gel. Back in the hood, carefully and slowing fill microfluidic channels with cell culture medium by advancing the liquid front pass the gel cage. Rapid introduction of fluid might result in bubbles near the gel (i.e. when approach the gel quickly, the fluid front is slower at the gel surface than the PDMS wall causing the front not to advance uniformly thus trapping air at the gel channel interface). 12. Repeat the media filling process for each device. Fill enough media just up to the levels of the port. 13. Store PDMS device in the incubator overnight in preparation for cell loading step. Overnight incubation before further handling helps to prevent leaks between glass coverslip and PDMS surface since bond strength increases with time. Human Schlemm's canal endothelial monolayer formation Materials and Equipment 1. Proliferation flask of hSCEC 2. Cell culture medium 3. PBS (w/o Ca 2 + or Mg 2 +) 144 4. Warm trypsin 5. Cell seeding box (Pipette tip box with glass slides Procedure 1. Prepare single cell suspension (1.0 x 106 cell/ml) a. Aspirate media from flash and wash with PBS (5ml for T25 flask) b. Add 0.5ml warm trypsin, tilt flask to distribute over cells and tap gently to help cell detachment. Cell detachment from flask is quick (< 1min) and does not require the typical incubation step during trypsinization. c. Add 4.5ml of warm cell culture media to inhibit trypsin, transfer contents to 15ml tube and centrifuge at 600 rpm for 5 minutes. d. Aspirate media and resuspend cells in cell culture media at the desired concentration. 2. Transfer PDMS devices from incubator to hood. Aspirate media droplet and flush channels with warm media. 3. Pipette cell suspension, tilt device and add to one port while keeping device in titled orientation (this allow cells to quickly accumulate near gel surface). 4. Transfer individual device to cell seeding box -keep tilted orientation. 5. Repeat 3-4 for all devices. 6. Incubate cell seeding box and culture devices in this orientation for at least 2-4 hours at 37C and 5% C0 2 . 7. Transfer cell seeding box from incubator to hood, wipe any moisture from glass coverslip surface and return devices to upright position in a clean Petri dish. Quickly examine cell attachment to gel under microscope. Flush channel once with warm cell culture media and add droplets to each port. 8. Maintain hSCEC in static culture for 2-3 days. A daily media exchanges is required. Additional Notes 1. Scalloped or concave gel interface does not work well for generating hSCEC monolayer, a flat surface or slight overfilled gel works better. 145 Human Schlemm's canal endothelial monolayer Derfusion Material and Equipment 1. hSCEC monolayer in device 2. Live cell dye, Dil (D-282, Molecular Probe) gift Michael Murrel 3. Microscope w/ environmental chamber 4. cell culture medium 5. Reservoirs 6. Push/Pull syringe pump 7. Syringe (new or sterilized) 8. Tubing (sterilized) Live Cell Staining Prior to setting up flow stain hSCEC monolayer with live cell dye (- 2 hrs). 1. Prepare warm cell culture medium (in 37 C water bath) with (Dil at 1:1000 dilution) and without cell staining dye. 2. Remove PDMS device with hSCEC monolayer from incubator and transfer to hood. 3. Aspirate media droplets from ports and perfuse channel with warm cell culture media without dye (to wash out any dead cells from channel). 4. Perfuse apical channel twice with medium supplemented with dye. 5. Add droplets to ports (i.e. media with dye to apical channel ports and media without dye to basal channel ports) and incubator for approximately 25 minutes. 6. At the end of the staining period, in the hood remove droplets and perfuse apical and basal channels with medium without dye. Wash apical channels thoroughly by perfusing and exchanging media 2-3 times. 146 AM, 6 0 "- Figure 3-23: Constant Flow Rate and Pressure Setups Fluid circuit layout for constant flow rate (A) and pressure (B) setups for generating transendothelial flow in AH outflow model Constant flow rate setup To generate flows rate within the physiologic range use the in vivo estimate of AH outflow rate (-2.5 pm/min) and projected surface are of Schlemm's canal to calculate an estimated flow rate per unit surface area. Procedure 1. Fill syringe with cell culture medium. 147 2. Attach 3-way valves, reducing connector and tubing to syringes. Figure x-x show an example of parts connections and setup. 3. Remove device (monolayer stained with live cell dye for fluorescent imaging) from incubator. In hood, aspirate droplets and flush channel with cell culture medium. 4. Connect inflow tubing to basal channel ports and outflow reservoirs to apical channel ports (with spill of port) to device. 5. Transfer setup to microscope equipped with an environmental chamber (not shown above). 6. Setup image acquisition program and ROI on monolayer. 7. Start syringe pump. 8. Immediately start image acquisition. Survey any monolayer response at lower magnification when possible and magnify. for better resolution as necessary. Reservoir pressure setup An example of the setup for defining the pressure drop across the hSCEC monolayer is shown in Figure 3-23B. In this setup, the pressure drop across the inner wall is used as a guide for experimental pressure levels. Procedure 1. Fill reservoirs (4 per device) partially with cell culture medium via reducing connector (check to ensure that small bubbles are not trapped in connector). 2. Transfer devices with monolayer from incubator to the hood. Aspirate droplets from ports and perfuse channel with warm cell culture media. 3. Carefully connect reservoirs one at a time while making sure not to trap any bubble in connector or ports. Top off liquid in the connector region of the reservoir. 4. Add warm media to reservoir connected to the basal channel ports. Here the relative difference in the liquid level in the reservoir establishes pressure differential across the hSCEC monolayer thus generating flows. 5. For live cell imaging, transfer setup microscope stage equipped with an environmental chamber otherwise return setup to the incubator (5% C0 2 and 37 C). 148 6. Setup up image acquisition software and ROI on monolayer. 7. Start image acquisition. Survey any monolayer response at lower magnification when possible and magnify for better resolution as necessary. Hydrodynamic Filtration Pattern The perfusion setup for hydrodynamic filtration pattern with tracer beads is the same as described above except that cell culture media in the basal channel and reservoirs connected to basal channel is replace with cell culture media containing microbeads. Beads size selection. Initial experiments were done with 500nm, 200nm, 100nm and 20 nm beads to examine bead passage through gel. 500nm beads frequently got trapped and 100 nm beads were too small for easy tracking. Based on results 200nm bead size was selected. Material and Equipment 1. hSCEC monolayer in device 2. Live cell dye, Dil (D-282, red-orange, Molecular Probe) gift Michael Murrel 3. Microscope w/ environmental chamber 4. Warm cell culture medium 5. 200nm microbeads (green) 6. Reservoirs Procedure 1. Fill reservoirs partially with cell culture medium via reducing connector. Two reservoirs with only media and two with media containing microbeads (1:10000 dilution). Check to ensure that small bubbles are not trapped in connector. 2. Transfer devices with monolayer from incubator to the hood. Aspirate droplets from ports and perfuse channel with warm cell culture media. 3. Carefully connect reservoirs (connect apical reservoirs first) one at a time while making sure not to trap any bubble in connector or ports. Top off liquid in the connector region of the reservoir with appropriate media. 149 4. Add warm media containing microbeads to reservoir connected to the basal channel ports. Here the relative difference in the liquid level in the reservoir establishes pressure differential across the hSCEC monolayer thus generating flows. 5. Transfer setup microscope (Epifluorescent or Confocal). An environmental chamber is needed for long term tracking experiment. In these studies, imaging with epifluorescent microscope works well for visualizing bead traces as fluorescent streaks (high exposure acquisition). 6. Acquire time-lapse images. 7. At the end of the experiment transfer micrographs to ImageJ for further analysis (e.g. reconstructing bead tracks, determining bead velocities and patterns) 150 Chapter 4: Biomechanical regulation of angiogenesis ** **Material in this chapter has been submitted to a peer-review journal a. Chapter Abstract A bias towards angiogenesis from the venous circulation has long been known, but its cause remains unclear. Here we explore the possibility that high interstitial pressure in tumors and the resultant net filtration pressure gradient that would induce flow from the interstitium into the venous circulation or lymphatics could also be an important mechanical regulator of angiogenesis. The objective of this study was to test the hypothesis that basal-to-apical (B-A) transendothelial flow promotes angiogenesis and to investigate potential mechanisms. Macro- and microvascular endothelial monolayers were cultured on type I collagen gels in a microfluidic cell culture device and subjected to apical-to-basal (A-B) and B-A transendothelial flows. Samples were perfusion fixed and analyzed for morphological responses, localization and degree of phosphorylation of certain signaling proteins. Application of B-A, but not A-B flow, to cultured endothelial monolayers was found to promote capillary morphogenesis and resulted in distinct localization patterns of VECadherin and increased FAK phosphorylation. These results suggest that B-A flow triggers the transition of vascular endothelial cells from a quiescent to invasive phenotype and that the flowmediated response involves signaling at cell-cell and cell-matrix interfaces. These results support the hypothesis that transendothelial pressure gradients resulting in B-A flow promotes sprouting angiogenesis and are consistent with early observations that tumor angiogenesis occurs from the venous side of the circulation. 151 b. Introduction Angiogenesis - the formation of new blood vessels from a pre-existing parent vessel - is commonly defined by the imbalance of soluble pro- and anti-angiogenic factors (44). The biochemical regulation which involves the binding of soluble ligands to endothelial cell (EC) surface receptors and subsequent downstream signalling have been painstakingly mapped out by decades of research (143), (207), (208). The in vivo endothelial microenvironment however, is a complex integration of both biochemical and biomechanical factors, which together promote either a quiescent or angiogenic phenotype. The relative importance of biochemical or biomechanical stimuli in the regulation of endothelial fate and function remains unclear. Nonetheless, it is widely accepted that mechanical forces regulate endothelial cell growth, differentiation, motility, protein synthesis and gene expression (209). Studies of the impact of mechanical stimulation due to fluid flow on cultured endothelial monolayers traditionally focus on the effects of shear stress - an important regulator of vascular tone, homeostasis, inflammatory and immune response. In vivo, endothelial cells are subjected to both surface shear flow as well as transendothelial flow - fluid filtration across the endothelium caused by pressure differentials between luminal/apical and abluminal/basal endothelial surfaces. Apical-to-basal (A-B) transendothelial flow has been shown to inhibit the transmigration of neutrophils across human umbilical vein EC (HUVEC) cultured on polycarbonate filters (210), alter EC transport properties (211) and influence capillary morphogenesis (131) (212), (213), although the mechanisms for this remain to be elucidated. Early studies of tumor angiogenesis made the observation that new vessels emerge predominantly from venules (214). However, the direction of transendothelial flow, which is also physiologically relevant, has only recently been investigated in the context of endothelial function or sprouting angiogenesis (212), (213). 152 High interstitial pressure is a hallmark of neoplastic tissue (215), (216) and gradients in interstitial pressure are thought to play an important role in a variety of developmental processes (217). With high interstitial pressure induced by the solid tumor, neighboring blood vessels from the lower pressure circulation are potentially affected by the resulting transmural pressure, causing vessel collapse and potentially influencing the rate of transendothelial flow. The resultant net filtration pressure gradient would induce flow from the interstitium into the venous circulation or lymphatics. Endothelial cells lining these vessels would be subjected to transendothelial pressures with higher pressure on the basal-surface compared to the apical surface. Under these conditions basal-to-apical (B-A) transendothelial flow is highly probable. The objective of this study was to study the role that B-A transendothelial flow exerts on sprouting angiogenesis and to investigate potential mechanisms. In this study, we present evidence of the initial signalling cascade that is initiated by B-A flow and propose links based on our results and previously published work that supports an argument for mechanically-stimulated angiogenesis. We find that FAK-mediated signalling accompanied by extensive remodelling of cellcell junctions and redistribution of the actin cytoskeleton contributes to the effect of transendothelial flow on vascular sprouting. 153 c. Materials and Methods i. Cell Culture Human dermal microvascular endothelial cells (HMVEC - cc-2643, LONZA, Walkersville, MD) and human umbilical vein endothelial cells (HUVEC - cc-2617, LONZA) were expanded on collagencoated flasks in EGM-2MV (cc-3202, LONZA) and EGM-2 (cc-3162, LONZA) medium, respectively. Cells were cultured in a humidified incubator at 37 'C and 5% C02 . All experiments were conducted with passages 4-6 cells. Monolayer maintenance medium was EGM2MV without hydrocortisone. Experimental medium was maintenance medium supplemented with VEGF165 (293-VE-010, R&D Systems Inc., Minneapolis, MN) or VEGF121 (4644-VS-010, R&D Systems Inc.) where indicated. ii. Microfluidic - based cell culture platform A microfluidic-based cell culture system with the demonstrated capability of controlling the biochemical environment and flow was used in these studies, as described in detail in (41). Briefly, the design includes two independent microfluidic channels that are separated by a central region "gel cage" for housing injectable hydrogels (synthetic peptide, Matrigel, collagen) allowing for simultaneous culture on two-dimensional (2D) surfaces and within three-dimensional (3D) matrices. This geometry permits the establishment of pressure gradients and small interstitial fluid flows through the 3D matrix. The device is fabricated using standard soft lithographic techniques from Polydimethylsiloxane (PDMS - 184 SIL ELAST KIT, Ellsworth Adhesives, Germantown WI), a widely used biocompatible and optically transparent elastomer for microfluidics-based cell culture devices (30). For a detailed description of device assembly and operation see Vickerman et al 2008 (41). Interstitial flow is established by means of inserting small reservoirs into the inlet and outlet 154 ports of the channels, and regulating and monitoring the relative heights of the liquid columns (41), (153), thereby allowing both flow rate and pressure drop to be determined by visual inspection (details provided in Supplementary Information). iii. Imaging Multiple imaging modalities were used in this study. Phase-contrast (Zeiss Axiovert 200, Carl Zeiss, Germany), epifluoresence (Nikon TE300, Nikon Instruments Inc., NY), confocal (Olympus FluoView 1000 , Olympus America, Center Valley, PA and Carl Zeiss 510, Axiovert 200M Laser Scanning Microscope, Carl Zeiss, Germany) and transmission electron microscopy (Model 300, Philips, Eindhoven, The Netherlands) were used to characterize microenvironmental properties, cellular morphology, protein localization and phosphorylation state. EC monolayers grow perpendicular to the imaging plane which readily permits sprout visualization and imaging. iv. EC monolayer formation and characterization In the current study, rat tail collagen type I was used as scaffold. Liquid rat tail collagen type I prepolymer solution (354236, BD Biosciences) was prepared according to product specifications to obtain a final gel concentration of 2.5 mg/ml. Collagen gels and endothelium monolayers were formed in the microfluidic devices as previously described (41). Briefly, collagen pre-polymer solution was microinjected into the gel-cage, sealed with a glass coverslip and polymerized at 37 'C for 30-35 min. Following collagen polymerization, gels were incubated overnight in monolayer maintenance medium. Cell suspension was perfused through one microfluidic channel, device tilted and cells allowed to attach to the collagen gel surface, spread and form a monolayer. Diffusional permeability, Pa, was measured by monitoring the concentration of fluorescent dextrans introduced 155 via the endothelial-lined channel under steady-state conditions, as described in detail in Supplementary Information. Evaluation of EC expression and localization of adherens and tight junction proteins was done by immunolabeling with purified rabbit polyclonal VE-Cadherin (ALX- 210-232-C100, ENZO Life Sciences, Uniondale, PA) and mouse monoclonal ZO-1 (339110, Invitrogen, Chicago, IL) primary antibodies (details below). Labeled monolayers were imaged with a confocal microscope. In separate samples, further ultrastructural characterization was done using transmission electron microscopy (TEM) (details provided in Supplementary Information). v. In vitro transendothelial flow angiogenesis assay Basal-to-apical and A-B trans-endothelial flows were generated by imposing a higher liquid column (typically 80 mm) on the basal or apical surface of the EC monolayer, respectively. The monolayer was perfused with experimental medium for 24 hours whereas non-flow or static conditions were used as control. At the end of an experiment, the monolayer was fixed with 4% paraformaldehyde (PFA), stained with 4', 6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich, Atlanta, GA) for nuclei and phalloidin (Alexa Fluor 488-phalloidin, A12379; Invitrogen, Chicago, IL) for actin and stored for further processing. Fixed samples were imaged with a confocal microscope (Olympus FluoView 1000) to generate stacks for further quantification. Length, number of sprouts and total number of cells that invaded in 3D gel were used as simple metric for quantification (155). "True sprouts" were characterized as capillary-like structures that contained at least one nucleus. Similar experiments were conducted to study the effect of pharmacological inhibition (see details below). vi. Evaluation of signal transduction at cell-matrix adhesions Transendothelial flow direction-related difference in signalling at cell-matrix adhesion was 156 determined by quantifying levels of phosphorylation of FAK on Tyr 397 compared to total FAK. Antibody pairs were validated (methods described in Supplementary Material; Table 4-1 and Figure 4-12) before use for quantification. Endothelial cell monolayers were subjected to A-B, B-A flow or static conditions, perfusion fixed and immunostained with mouse monoclonal anti-FAK (Clone 4.47, Millipore) and rabbit polyclonal anti-p-FAK Y397 (ab4803, Abcam Inc.) and appropriate secondary antibodies (detailed below). Samples were also counterstained with DAPI to identify nuclei. Doubly immunolabeled samples were imaged with a confocal microscope (Carl Zeiss 510, Axiovert 200M Laser Scanning Microscope) equipped with a multi-track channel system, to generate stacks (at least 40 slices, 1 tm thick) for p-FAK, FAK and DAPI. ImageJ (U.S. National Institute of Health, Bethesda, MD) (218) was used to quantify florescent intensity for FAK and pFAK Y397. Average p-FAK/FAK ratio was then calculated for each stack. Average ratios for A-B and B-A flow were normalized by averages from static controls. For quantification, confocal settings were kept the same for all samples. Reported p-values were obtained from Student's t-test analysis. vii. Localization of signaling protein On the assumption that the morphological changes observed at later times were a consequence of signaling activated much earlier, shorter term experiments were also conducted to study the effects of flow direction on signaling protein localization. HMVEC monolayers were perfused in either B-A or A-B direction for 2 hrs and perfusion fixed while maintaining the initial flow direction. Samples were subsequently immunolabeled (details below) with VE-cadherin antibody (ALX-210-232-C100, ENZO Life Sciences, Uniondale, PA) and imaged with a confocal microscope (Carl Zeiss 510, Axiovert 200M Laser Scanning Microscope). A series of at least 40 optical serial sections were obtained. Each confocal slice yields a cross-sectional view of the monolayer which is formed 157 perpendicular to the optical imaging plane. Enface views showing protein localization on the monolayer was generated from projection of image stacks using LSM Image Browser (Carl Zeiss, Germany) software. Fluorescent line intensity profiles were obtained for quantitative representation of VE-cadherin distribution. Cross-sectional images of the monolayer were obtained by confocal imaging and processed in ImageJ (U.S. National Institute of Health, Bethesda, MD). Fluorescent intensity was obtained along a horizontal line defined between two adjacent cell-cell junctions. viii. Pharmacological Inhibition Two sets of pharmacological experiments were conducted: (1) long term, to evaluate the effect of various inhibitors on EC migration or sprouting angiogenesis, and (2) short term, to determine the effect on flow-induced protein localization. For these experiments 3D sprouting assays were repeated in the presence of the following small molecules: Genistein (100 [tM; 345834, EMD Chemicals Inc., Gibbstown, NJ ), a tyrosine kinase inhibitor (219), PP2 (10 [tM; 529576, EMD4 Biosciences, San Diego, CA), a Src inhibitor (220), Y27632 (50 piM; 688000, EMD4 Biosciences), a Rho-associated kinase (ROCK) inhibitor (221), Heparinase III (15 mU/ml; H8891, Sigma-Aldrich, Atlanta, GA) and L-NAME (100 liM; N5751, Sigma-Aldrich, Atlanta, GA), a nitric oxide synthase (NOS) inhibitor (222). Many dynamic processes and molecular interactions in cells are mediated by protein phosphorylation and Genistein is a widely used tyrosine kinase inhibitor. Rho proteins and their effectors play essential roles in regulating cytoskeletal events critical for cell migration. The main downstream RhoA effector, ROCK, controls actomyosin contractility which is important for 3D cell migration. ROCK inhibition with Y27632 treatment decreases invasive potential of cancer cells (223) (224). Furthermore, tumor-derived endothelial cells reportedly record constitutively high 158 levels of ROCK (225). A subset of the pharmacological inhibitors was used to further investigate the effects of inhibition on protein localization. In all studies inhibitors were incubated 2 hours prior to and throughout flow treatment. As before, monolayers were perfusion fixed with 4% PFA, immunostained and imaged by confocal microscopy. ix. Antibody Labeling and Counterstaining For antibody labeling, fixed samples were rinsed twice with 1X PBS, permeabilized with 0.1% Triton-X, rinsed twice with 1X PBS and incubated at room temperature for 2 hrs in blocking buffer 10% BSA in PBS. Following the blocking step, samples were then rinsed once with rinse buffer 0.5% BSA. Primary and secondary antibodies were diluted in rinse buffer. Blocked samples were incubated with primary antibodies overnight at 4 C. Subsequently, samples were then washed thoroughly with rinse buffer (3-times, 30 min rinse incubation at room temperature) and incubated with secondary antibodies in the dark for 2 hrs. Following indirect antibody labeling, samples were washed thoroughly with 1X PBS and counterstained at the indicated dilution with DAPI (1:1000) to identify nuclei and phalloidin (1:50) to label F-actin. In some cases, fixed and Triton-X treated samples were stained with only DAPI and phalloidin thus the blocking, antibody incubation and associated wash steps were not required. d. Results i. Functional Formation of a functional EC monolayer monolayers with barrier function to fluid and macromolecules establishment of transendothelial pressure gradients and flow. are vital for In order to characterize the 159 functionality of the monolayers cultured in our microfluidic device, both the permeability of a 40kDa dextran (typical size of growth factors) and the expression of junction protein were evaluated. EC cultured for 24 hrs on type 1 collagen expressed both tight and adherens junction protein as indicated by immunofluorescence staining for ZO-1 and VE-Cadherin, respectively (Figure 4-1). The expression profile is similar to that of ECs cultured on glass (supplementary material Figure 4-8). Ultrastructural analysis of the monolayer from TEM micrographs shows typical junction morphology of extended membrane adhesions [Figure 4-1C]. Monolayer functionality was also assessed by testing barrier function of monolayers cultured for 24 hours using a fluorescent 40kDa dextran and computing diffusional permeability. An average Pd value of 9.7 x 10- m/s was obtained which is comparable to values reported in the literature for monolayers cultured in vitro (226). Together these results demonstrate that EC formed a functional barrier on the collagen gels within microfluidic device and is capable of supporting transendothelial pressure gradients (see also Discussion). 160 C h a nn e| Gel apical-to-basal Flow basal-to-apical Flow VE-cadherin Dapi VE-cadherin ZO - 1 Dapi Dapi Merged Figure 4-1: Microfluidic-based 3D cell culture system for studies of the effects of transendothelial flow on sprouting angiogenesis from an endothelial monolayer. (A) Layout of microfluidic-based 3D cell culture system. Design features include "gel-cage" loaded with collagen gel (pink), an array of pillars (white squares) for mechanically supporting the gel and two parallel fluidic channels (denoted apical- and basal at pressures P 1 and P 2, respectively). Single cell suspension is perfused through the apical channel and an endothelial monolayer grows to confluence. (Dashed arrows denote direction of flow). Transendothelial flow is established in either A-B (red) or B-A (green) direction by applying a pressure gradient across the gel-cage. (B) Confocal images of endothelial monolayer showing coverage on gel and channel surfaces, immunostained with anti-VE-cadherin (Red) and nuclei (Blue). To confirm that EC form physiologically relevant 161 monolayers the quality of cell-cell junction was evaluated. (B) Localization of tight junction and adherens junction proteins was analyzed by confocal microscopy (Magnification 40x). En face view of doubly labeled monolayer (i) VE-Cadherin, (ii) ZO-1 and (iii) merged images indicating colocalization at cell-cell contacts. Inset shows cross-sectional views. (C) Ultrastructure of cell-cell junction of monolayer cultured in the device was analyzed by transmission electron microscopy (TEM). Micrograph of EC cell-cell contact shows typical junction morphology. ii. Switching response evoked by transendothelial flow Prior studies in our lab have demonstrated the use of our microfluidic-based cell culture device for chemokine or biochemically induced sprouting angiogenesis assays. In the current work, the impact of a biomechanical stimulus - transendothelial flow - on sprouting angiogenesis is investigated. Confluent monolayers of HMVEC were cultured on 3-D collagen gels and subjected to A-B or B-A flow for 24 hrs. B-A flow induced an angiogenic response (Figure 4-2A, right) while monolayers subjected to A-B flow remained quiescent [Figure 4-2A, left]. In addition to sprout formation/capillary morphogenesis, B-A flow also induced/triggered invadopodia (extensive and highly branched filopodia-like projections which are actin rich membrane projections) that extend deep into the 3D gel. Further morphogenesis of these sprout precursors result in the formation of true sprouts once the nucleus has translocated from the monolayer to the elongating stalk. The dynamics of this process is captured using time-lapsed video microscopy (see sequential images from movie in Figure 4-2G for five time points). In order to determine if these flow-induced effects were unique to microvascular cells, separate experiments were conducted using HUVECs. Similar to microvascular cells, cells of a macrovascular origin form sprouts in response to B-A flow (see Supplementary material Figure 4-9). 162 , MB-A Flow 36 AA-B Flow UStatic 13 0 0 Num. of Invasive Cells *; 0 0 Num. of Sprouts 60 50 40 n HUVEC 30 mHMVEC 20 10 Num. of Invasive Num. of Sprouts Cells B-A Flow * (i) - 30 min B-A Flow (ii) -110 min iii) - 168 min (iv)- 242 min (v)- 270 min Figure 4-2: Transendothelial flow direction modulates EC monolayer phenotype (Red arrow indicates flow direction). HMVECs are cultured on rat tail collagen type I gels and subjected to B-A, A-B flow and static control. (A) Fluorescent micrograph of HMVEC monolayer subjected to A-B (LEFT) and B-A (RIGHT) transendothelial flow (green-actin cytoskeleton, bluenucleus). Scale bar = 20 prm. (B) Quantification of the asymmetric response that is observed. The average number of cells that have migrated into the collagen gel as well as average number of sprouts per device is reported. (Note: Some cells also migrate as single cells and are not considered as sprouts). (C) Comparison of B-A induced sprouting in HUVECs (macrovascular EC) and HMVECs (microvascular EC).) (D) Confocal image of invadopodia and nucleus deformation during the formation of true spouts. (G) Time-lapse images from video micrograph during B-A flow induced sprouting angiogenesis. Endothelial cells project invadopodia in response to B-A flow initiation and subsequently invade the underlying collagen gel to form sprouts. Scale bar = 20um 163 iii. Multiple signaling pathways are involved in B-A flow induced sprouting angiogenesis In order to identify potential signaling pathways that might be involved in B-A transendothelial flow induced angiogenesis, we first used a panel of pharmacological inhibitors to target signaling pathways common to angiogenesis. Protein phosphorylation is a common post-translational modification that affects protein function or state of activation. Tyrosine phosphorylation inhibition, with a natural protein kinase inhibitor, Genistein, blocked invadopodia formation and invasion (Figure 4-3), suggesting that B-A flow-induced sprouting angiogenesis is tyrosine phosphorylation-dependent. Treatment with PP2, a specific Src family kinase inhibitor, decreased EC invasion and sprout formation. Rho/ROCK signaling has been reported to be important for angiogenic processes including EC migration, survival and permeability (227). Inhibition with specific ROCK inhibitor Y27632 blocked B-A transendothelial flow induced EC invasion and "true" sprout formation. Instead, Y27632 treatment resulted in extensive invadopodia devoid of nuclei. These results are consistent with reports that Y27632 blocks VEGF-mediated angiogenesis in retinal explants, EC migration and lumen-containing tube-like structures in vitro (227). Our results demonstrate that invadopodia are necessary for EC invasion and sprout formation but their appearance does not guarantee the formation of true sprouts. Transendothelial flow has been reported to upregulate NO production (210). The NO pathway has been extensively studied in the context of cells exposed to A-B transendothelial flow or transmigration studies. For these reasons, the effect of NO production using the NO inhibitor LNAME was used to investigate the potential role of NO production in B-A flow induced angiogenesis. Consistent with this line of reasoning, NO inhibitor LNAME was also found to reduce B-A mediated EC invasion into collagen gels. The cell surface glycocalyx has been known to mediate shear response in endothelial (228), (5) and vascular smooth muscle cells (229). To determine the potential role of heparan sulfate proteoglycans 164 (HSPGs), cells were treated with heparinase III and subjected to B-A flow. Similar to other inhibitors, digestion of glycocalyx reduced B-A flow mediated EC invasion. 100 90 ____ ____ ___ ___ 2 ___ _ 80 70 60 0 _____ ____ ____40 ____ 20 10 Contml Genistein Y27632 PP2 Hepannase LNAME Pharmacological Inhibitors Ilep 1Irinae I\ \\l Figure 4-3: Inhibition of B-A flow induced angiogenesis by small molecule pharmacological inhibitors. Multiple potential signaling pathways are involved in B-A flow induced sprouting angiogenesis. EC monolayers were generated as described in Methods. Monolayers were incubated for 2 hours with experimental medium containing pharmacological inhibitors prior to and during B-A perfusion. Monolayers were perfused for a total of 24 hours, fixed with 4% PFA and stained for actin and nuclei with phalloidin and DAPI respectively. Samples were subsequently imaged and the degree of inhibition quantified. (A) Panel of representative confocal micrographs of monolayers subjected to B-A flow in the presence of inhibitors for Rho kinase (Y27633, 50ptM), Tyrosine phosphorylation (Genistein, 100pM), Src kinase (PP2, 10ptM), Enzyme specific to heparan sulfate - glycocalyx component (Heparinase III, 15 mU/ml) and Nitric oxide (LNAME, 100tM). (B) Quantification of the inhibitory effects of pharmacological inhibitors. 165 iv. B-A flow activation occurs via FAK-mediated signaling Pharmacological studies provided some clues into signaling pathways that might potentially be involved in B-A flow induced sprouting angiogenesis. However further investigation was warranted to identify the initiating event linking flow to signal transduction. To gain deeper insight into the observed switch response we postulated that ECs adherent to a matrix can sense the direction of transendothelial flow and that the observed difference in migration and sprouting angiogenesis could be attributed to differential integrin activation. Differential activation via cell-matrix adhesion receptors (e.g. integrins, HSPGs) was determined by quantifying the ratio of FAK Y397 to total FAK for the two flow directions relative to static control. Transendothelial flow direction induced different levels of FAK activation as measured by the FAK Y397 to FAK ratio [Figure 4-4]. Monolayers subjected to B-A flow consistently recorded significantly higher levels of the FAK Y397/FAK ratio compared to those exposed to A-B flow (p=0.0003) and compared to controls (p=0.0005), whereas A-B flow and control conditions were not significantly different. These results demonstrate that flow direction differentially affects FAK-mediated signaling. 166 Force| - -- - A pical-to-Basal - Apical ---- surface 'I Basal surface ----.- TEF HAtt -- Basal-to-Apical Integrins - - - Extracellular matrix (collagen type 1) Blue: Dapi nuclear stain Green: pFAKY397 U 150 a) 100 U a) s-i 0 zb so 4-J 0 0 4 8 12 16 Distance across cell (um) CU D 1.6 T 0 4-J 1.4 o 0 - a 1.2 1 2 0.8 > 5 4 3 <z 0.6 1 0 -J 2 hrs 0.4 0.2 6 hrs Flow Duration I St 0 Static Control A-B Flow l B-A Flow -j I Figure 4-4: B-A flow promotes activation of integrin-mediated adhesion in endothelial monolayers. (A) Schematic of B-A flow induced forces at cell-matrix adhesion. EC monolayers were subjected to 2 and6 hrs of static, apical-to-basal and B-A flow conditions. Fixed samples were labeled with antiFAK and p-FAK Y397 antibodies. (B) En face view of monolayer subjected to apical-to-basal (TOP) and B-A (BOTTOM) transendothelial flows labeled with p-FAK Y397 antibody. (C) Confocal image showing cross-sectional view of EC monolayer subjected to B-A flow and labeled with p-FAK Y397 167 antibody (LEFT) and fluorescent line intensity profile (RIGHT) from apical to basal cell surface showing asymmetry of p-FAK Y397 distribution towards cell-matrix interface. To evaluate FAK activation the ratio of p-FAK to total FAK was obtained for monolayers under static, A-B and B-A flow treatments. (D) (LEFT) Quantification of pFAK Y397/FAK ratio. Values are reported relative to static controls. B-A flow samples are significantly different compared to apical-to-basal and static treatments (p-values 0.0003 and 0.0005 respectively). No significant difference between static and apical-to-basal treatment (p value 0.44). (RIGHT) Relative levels of p-FAK Y397 at 2 and 6 hours. v. Transendothelial flow direction differentially affects VE-cadherin localization Since signal transmitted via cell-matrix receptor, for example through integrins has been shown to regulate junctional remodeling (230), the effect of flow direction on endothelial cell-cell junction protein distribution was assessed. Confluent monolayers were perfused for 2 hrs in either apicalto-basal or B-A flow direction, perfusion fixed and stained for junction protein to capture early signs of differential protein distribution (Figure 4-5). B-A flow caused delocalization of VEcadherin from cell-cell junctions, while samples subjected to A-B flow retained well-defined junctional labeling. Compared to static controls there was no noticeable change in VE-cadherin localization that could be attributed to A-B flow. For the case of A-B flow, fluorescent intensity line profiles across the cell (Figure 4-5C) show distinct peaks and valleys corresponding to high and low VE-cadherin expression at cell-cell junctions and in the cytoplasm, respectively. A similar analysis for monolayers subjected to B-A flow yields, by comparison, a relatively uniform profile. These results demonstrate that flow direction differentially affects adherens junction remodeling and confirms the plasticity of cell-cell contacts, an important prerequisite for migration and angiogenesis. 168 line profile Cross-sectional View En Face View e e 300 S250 - 200 200 -Basal- 3- ~ Basal-to--- Apical-to 150 100 50 0 1 0.5 Normalized Cell-Cell Junction to junction Distance Figure 4-5: B-A flow induces delocalization of VE-cadherin Functional monolayers were generated as described in Methods. HMVEC monolayer was subjected to 2 hrs of static, A-B and B-A flow treatments. (A) Enface view of HMVEC monolayer subjected to A-B (TOP) or B-A (BOTTOM) transendothelial flow. (B) (TOP) Schematic of procedure for obtaining intensity profile. (BOTTOM) Fluorescent intensity line profile across cell. RED: B-A flow and BLACK: A-B. Intensity profile was obtained according to the schematic. B-A flow caused diffuse VE-cadherin labeling pattern while A-B flow maintains typical VE-cadherin pattern characteristic of well-defined junctions. vi. Transendothelial flow direction differentially affects actin cytoskeletal organization Because forces acting on focal adhesions often lead to recruitment or rearrangement of various intracellular proteins including actin (231), (232), (233), we investigated the effect of transendothelial flow direction on actin distribution. In addition, since cell-cell junctions are mechanically coupled to actin cytoskeleton, we suspected that reorganization of VE-cadherin complexes might also result in remodeling of the actin cytoskeleton. Transendothelial flow direction exerted a strong influence on the intracellular distribution of F-actin as revealed by 169 confocal sections of phalloidin stained monolayers (Figure 4-6). Monolayers subjected to A-B flow exhibited dense actin labeling at cell-cell contacts, whereas monolayers exposed to B-A flow exhibited a more diffuse/disorganized staining pattern. In addition B-A flow induced clustering of actin near the basal surface from which "hair-like" structures emerged (Figure 4-6C (ii)), at the tips or filopodia/invadapodia (Figure 4-6C (iii)) and the base of newly forming sprouts (Figure 4-6C (i)). Cross-sectional View B-A Flow 06 apical surface to basal distribution of actin I 04 i 0.2 0 L 0 0.5 1 1 .6-4 0.9 0.8 0 .C 0.7 0.6 0.5 0) 0.4 E 0 z 0.3 0.2 0.1 0 0 0.5 1 Normalized distance across cell U 3D View Figure 4-6: B-A flow direction affects distribution of cortical actin (A) Confocal section of HMVEC monolayer exposed to A-B (TOP) and B-A (BOTTOM) flow. Samples were fixed and stained with phalloidin to label actin cytoskeleton. (B) Fluorescent line intensity profile of actin localization across cell for A-B (BLUE) and B-A (RED) flow directions; (INSET) apical 170 surface to basal surface distribution of actin for monolayer subjected to B-A flow, showing notable clustering of actin towards basal surface. (C) (LEFT) 3D view of a sprouting monolayer stained with phalloidin (RIGHT) Magnification of boxed regions highlighting actin localization and clustering towards basal surfaces. vii. VE-Cadherin delocalization is mediated by Src Src is important in mediating communication between focal adhesions and cell-cell junctions (234), and has been implicated in angiogenesis in vivo and in vitro (235). Our results show clustering of phosphorylated Src at locations in monolayers from which sprouts emerged (Figure 4-7A). Src is reportedly a key mediator in signal transduction between integrin-mediated adhesions and cadherin mediated cell-cell contacts (234). Furthermore upon integrin activation, Src associates with FAK in focal complexes and VE-cadherin is known to possess a Src phosphorylation site on Tyr 658 (236), (237). We therefore wanted to determine whether B-A flow induced VE-cadherin redistribution at cell-cell contact was mediated by Src. Treating monolayers with PP2 prior to and during the application of B-A flow, we found that this Src-family kinase specific inhibitor was able to substantially reduce B-A flow induced VE-cadherin delocalization (Figure 4-7B), demonstrating that B-A flow induced VE-cadherin delocalization at cell-cell junction is mediated by Src. 171 B En Face View I U. Figure 4-7: Src mediates B-A flow induced remodeling at cell-cell junction. (A) Reconstruction of confocal images showing 3D views of B-A flow induced sprouting monolayer stained with anti-p-Src Y416 antibody (GREEN) and DAPI (BLUE). (i-ii) View from basal surface, showing clustering at membrane projections (white arrow) and tip cell (inset); (iii-iv) View from apical surface showing p-Src clustering where sprout emerges from monolayer, around lumen (inset). (B) B-A flow induced VE-cadherin delocalization from junctional complex is mediated by Src. Images show enface view of monolayer subjected to B-A flow (i) without PP2 (control) (ii) with Src inhibitor, PP2 treatment and stained for VE-cadherin (RED) and DAPI (BLUE). e. Discussion and Conclusions Cells are continuously experiencing external mechanical perturbations within their environment and mechanical forces play an important role in physiological as well pathological conditions. Of particular interest is the role that mechanical forces play in the tumor microenvironment. Much of the work published on endothelial mechanotransduction addresses cardiovascular diseases while 172 tumor vascularization studies typically focus on the chemo-regulation in the recruitment of new blood vessels. Here we explore flow-mediated regulation of angiogenesis in a tumor environment and demonstrate that sprouting angiogenesis can be promoted by B-A transendothelial flow through a process that is mediated by integrin activation. This work confirms that the tumor microenvironment is mechanically dynamic and that mechanical stress may be an important factor in the initiation of angiogenic sprouts. i. Flow direction acts as an angiogenic switch We investigated the effect of transendothelial flow direction on sprouting angiogenesis and observed a switch-like response in which B-A flow promotes angiogenesis but the reverse flow direction, A-B, did not. Our results therefore suggest that transendothelial flow direction acts as an angiogenicswitch. B-A flow promotes angiogenesis in micro- and macro- vascular endothelial cells defining an angiogenic ON state while the alternate flow direction - apical-to-basal - maintains the OFF state. This behavior is consistent with the early observation that neovascularization in tumors originate from venules and post-capillary venules (214). ii. EC activation is due to mechanical stimulation The observed angiogenic response could be due to either biochemical or biomechanical stimuli. We first explored the hypothesis that a migratory stimulus could arise due to concentration polarization of soluble or matrix-bound growth factors (e.g. VEGF) arising from B-A flow in combination with the low permeability of the endothelial monolayer. Experiments at saturation levels of VEGF165 and VEGF121 (the non-binding isoform) (results not shown) confirmed that the influence of flow direction was unaltered. Furthermore, intuition, confirmed by numerical simulation, tells us that although B-A flow would lead to higher concentrations at the basal 173 membrane, it would also produce a gradient that would discourage sprouting in that the concentration would fall in the direction of cell migration. Thus, although we cannot completely rule out the possibility that biochemical effects contribute to our observations; this evidence suggests that factors other than biochemical gradients are responsible. iii. B-A Flow increases FAK-mediated signaling at cell-matrix adhesions Based on the low hydraulic permeability of the endothelial monolayer, a simple force balance dictates that the pressure difference associated with B-A flow would give rise to a net force acting to lift the cells off the hydrogel surface. Since separation was not observed, presumably the cell matrix adhesions, for example a1p1 or a2@1 integrins in the case of type I collagen or HSPGs must be capable of supporting the force arising from this pressure drop. Conversely, in A-B flow, the cell can be supported by direct physical contact with the gel; to the extent that the cell adhesion receptor-collagen bonds support the load, it would be compressive rather than tensile. It is well established that integrins transduce signals from the extracellular matrix (238), and that mechanical force leads to integrin activation (239) resulting from integrin conformational change (240) or clustering (241) (242). While there is insufficient evidence to irrefutably name the specific cell-matrix adhesion mechanosensor, based on evidence in the literature and models describing the signalling events following integrin activation it is tempting to speculate that the observed difference due to flow direction is integrin-mediated. It is widely accepted that integrin activation leads subsequently to phosphorylation of Tyr 397 in focal adhesion kinase (FAK).Nevertheless we cannot completely rule out potential contributions due to non-integrin mediated signalling. Our observations that B-A flow induces a significant increase in the ratio of p-FAK Y397 to total FAK when compared to A-B or static conditions therefore supports the role of FAK-mediated signalling in the cellular response due increased autophosphorylation and potential integrin activation. A 174 recent study by Shi et al., (229) reports on FAK-mediated signaling downstream of HSPGs induced by interstitial flow for vascular smooth muscle cells (SMCs) suspended in collagen gel. Here they propose a cooperative interaction between integrin and HSPGs with the latter being the main signal transducer. A potential role for HSPGs is also plausible in our current study on the basis of the observed inhibitory effect of heparinase treatment on B-A flow induced cell invasion. Unlike in our current study, Shi et al., (229) did not observe changes in FAK phosphorylation on Tyr 397, instead flow mediated difference were observed at Tyr 925. Due to differences in cell type (SMCs vs. EC), seeding configuration (3D suspended cells vs. monolayer) and other differences in experimental methods it is difficult to reconcile the differences in FAK-mediated signaling and subsequent conceptual models. Nevertheless, crosstalk between signaling pathways downstream of individual mechanosensors is highly probable. Consequently, further investigated is necessary to identify potential mechanosensor(s) and to determine the involvement of integrins, HSPGs or both in the current model. We postulate that at the molecular level, B-A flow produces tension at the site of cell-matrix adhesion and subsequent activation of an undetermined mechanosensor as reflected by FAK Y397 levels. Src, which translocates to cell-matrix adhesions following integrin activation or FAK autophosphorylation on Tyr 397, subsequently becomes activated. Following this initial event Src can further phosphorylates FAK on multiple other sites including Tyr 576 and Tyr 577 in the activation loop, which promotes optimal FAK activity (236). We propose that this is the major difference between flow directions that results in the observed angiogenic response. Besides physically tethering cells to the extracellular matrix, integrins are important regulators of cell growth, survival and migration during angiogenesis (243). Collagen type I engages both aisi and a21 integrins; key regulators of VEGF-induced angiogenesis (244). It is conceivable that a similar angiogenic signaling cascade is triggered due mechanical activation of integrins ligated to collagen gels during B-A transendothelial flow. 175 iv. B-A flow induced VE-Cadherin delocalization and angiogenesis are mediated by Src VE-Cadherin engages in homophilic interactions between neighboring cells and its presence at cellcell junctions is typical of a quiescent endothelial phenotype. We demonstrate here that B-A flow promotes delocalization of VE-cadherin from cell-cell junctions, while static or apical-to-basal flow does not. While this could be a direct consequence of forces acting at the cell-cell junction, we postulated that this junctional remodeling is due instead to signaling initiated by integrin activation. VE-cadherin intercellular adhesive activity is regulated by cytoplasmic signaling events involving catenins, which can be abolished by tyrosine phosphorylation of both catenin and VEcadherin. Disruption of cadherin-catenin complexes causes the destabilization of intercellular junctions (245). Remodeling of adherens junction can occur due to VE-cadherin internalization, enzymatic cleavage or kinase phosphorylation. Tyrosine phosphorylation of Y658 or Y731 on VEcadherin prevents the binding of p120- and p-catenin, respectively (246). VE-cadherin retention at adherens junctions requires association with p120 (247). B-A flow can therefore initiate a signaling cascade that causes disruption of adhesion complexes and subsequently delocalization of VEcadherin. Furthermore, VE-cadherin is a substrate for Src (246) and is phosphorylated on Y685 (237). Additionally, phosphorylation of VE-cadherin is inhibited in Src-deficient mice (248). For Src to function, the Src kinase domain must be unmasked. Src is activated by both growth-factor initiated signals (249) and those of a mechanical origin (239). VE-Cadherin complex disruption has been shown to enhance angiogenesis (250). While the detailed events leading to Src activation and subsequent association with VE-cadherin are beyond the scope of this paper, presumably, Src activation follows from B-A flow induced integrin activation. We also showed in pharmacological studies that VE-cadherin delocalization is Src-mediated; inhibition with PP2 blocks VE-cadherin 176 delocalization during B-A flow. Based on these findings we infer that VE-cadherin delocalization from intercellular junctions was likely due to phosphorylation of VE-cadherin which was mediated by Src and downstream of integrin activation. v. Reorganization of actin cytoskeleton by transendothelial flow The cytoskeleton is a key player in mechanotransduction (251) and invasive cell migration, which involves dynamic remodeling of actin cytoskeleton, is essential for angiogenesis. FAK promotes cell motility by activating regulators of cytoskeletal dynamics (e.g. Rac1) (252) and the intercellular adhesion complex is mechanically coupled to the actin cytoskeleton. It therefore follows that reorganization of VE-cadherin would affect distribution of actin at junctions. Direct evidence of cortical actin remodeling in the endothelial monolayer during sprouting angiogenesis is not available. Wang and colleagues reported VE-cadherin and actin remodeling when cultured cells were treated with ECM coated beads (230). Moreover, parallels can be drawn between sprouting angiogenesis and epithelial-to-mesenchymal transition (EMT) where cells transition from a stable endothelial (angiogenesis) or epithelial (see (253) for review) monolayer to acquire a migratory phenotype. Remodeling of cortical actin to actin stress fibers is a distinct feature of migratory mesenchymal cells (254). Epithelial cells exhibit cortical actin while transformed mesenchymal cells do not (255). Moreover, Src kinase activity is required for protrusion dynamics specifically; phosphorylation of FAK on Tyr 925 is directly mediated by Src and is necessary for the dynamic regulation of matrix adhesion during cell migration (256). vi. Force estimates acting on the monolayer Numerous studies have investigated the forces necessary to elicit a mechanoresponse, so it is useful to compare the levels of force acting on the monolayer to those associated with other 177 mechanotransduction phenomena. While it is difficult to determine the pressure drop across the monolayer as distinct from that across the gel-monolayer combination, based on a comparison of the flow through the matrix with and without a monolayer present, we estimate that under our experimental conditions, the monolayer supports a pressure of -15 Pa. Using this value in combination with an estimated cell area of -500 [tm2, we arrive at a value of -7 nN supported by each cell; this level of force is well in excess of that required by endothelial cell activation by shear stress (-0.5 nN) (8), (257) or by direct application of force by pulling on cell-tethered beads (-1.0 nN) (258). Therefore, in terms of force magnitude alone, it is not surprising that B-A flow activates mechanotransduction pathways. vii. Summary Proposed Model Collectively, these results suggest that B-A flow triggers the transition of vascular endothelial cells from a quiescent to a migratory phenotype. We present evidence of a signaling cascade that is initiated at focal adhesions and subsequently transduced across the plasma membrane prompting changes at cell-cell junctions and within the actin cytoskeleton. We propose that B-A flow produces mechanical stress at cell-matrix adhesions, which leads to FAK-mediated signaling, Src-dependent cell-cell junction remodeling and delocalization of VE-cadherin and cytoskeleton reorganization which promotes a transition from a quiescent to an invasive/angiogenic phenotype. Multiple proangiogenic signaling cascades follow FAK activation and VE-cadherin remodeling which would trigger endothelial cell invasion and angiogenesis. Furthermore, Src-induced deregulation at cadherin junctions in cancer cells require integrin signaling (234), and invadopodia dynamics during migration requires Src-specific phosphorylation of FAK (256). In vivo, new blood vessels predominantly emerge from postcapillary venules which is the lower pressure side of the circulation and would be more susceptible to B-A transendothelial flows in a 178 high pressure tumor environment. Following this line of reasoning, B-A flow could also contribute to tumor angiogenesis. It is intriguing that similar results can be captured in our microfluidic system, which opens the opportunity for future investigation of angiogenesis where both biochemical and biomechanical environment is recapitulated. Acknowledgements The authors thank Haiyan Gong for TEM imaging and use of their confocal imaging facility. We thank Choong Kim for help with3D graphics and Carlos Semino for helpful discussion. This work was supported by funding from NIBIB (EB003805) NSF SCT (CBET-0939511) and NSF-EFRI (0735997). 179 f. Supplementary Information i. Characterization of EC monolayer transport properties Diffusional permeability (Pd) In order to characterize the functionality of the monolayers cultured in our microfluidic device EC barrier function to dextran was evaluated. For diffusive permeability estimation, monolayers were cultured under static conditions. EC monolayers were formed as described above. Experimental medium in the apical channel was replaced with medium containing FITC-labeled dextran (Figure 4-10). Fluorescent images were obtained using an inverted microscope (Nikon TE300, Nikon Instruments Inc., NY) and micrographs acquired with a Hamamatsu ORCA-ER camera (Hamamatsu, Japan) using OpenLab image acquisition software at least 4 hours following incubation with dextran. We assume that the transport of dextran across the endothelial monolayer was due to passive paracellular transport from the apical channel. With this assumption Pd was estimated based on the diffusive flux of dextran across the monolayer: J= I = Ddextran * Pd * AC) (Ax gei (ACEC monolayer) Where Pd is the diffusional permeability, ACEcmonolayer is the concentration difference across the monolayer, Ddextran denotes the diffusion coefficient of dextran, (-)gel the concentration gradient 180 of dextran in the gel region and J the flux from the apical channel across the monolayer. A fluorescence intensity profile was obtained in ImageJ (U.S. National Institute of Health, Bethesda, MD) (Figure 4-10B) from which ACEc monolayer and M coefficient for 40kDa dextran, 4 x 10-11 el were calculated. The diffusion m 2 /s, was used (41). Flow rate measurement and Pressure drop Estimation Fluid velocities in the gel and pressure drop across the EC monolayer were estimated using a bead tracer method (details below). First, the Darcy permeability of collagen gel (k) without an EC monolayer was calculated from Darcy's Equation for flow through a porous matrix. v = - k VP Ki Darcy's Equation where VP denotes the imposed pressure gradient, pt denotes fluid viscosity and v is the fluid velocity which is obtained experimentally from measurements of tracer particle velocity. As before, fluid reservoirs were used to impose a pressure differential across the gel region. To visualize fluid passage through the gel, fluorescent microspheres were added to the upstream reservoirs and tracer velocities, v determined as a function of a known pressure drop, APtot, across the collagen gel alone. Separate experiments were repeated with collagen gels covered by an EC monolayer to obtain new values for v. In these experiments the upstream reservoir was connected to the basal channel. Here, the collagen gel and the endothelial monolayer were modeled as two resistors in series, and the total pressure drop, APtot, is the sum of the pressure drops across the gel (APgel) and EC monolayer (APEc monolayer)181 Vtot = APgel + APEc monolayer From Darcy's equation, the resistance, Rgel = IL -L where L is the width of the gel in the flow direction. From this, the pressure drop across the EC monolayer, APEc monolayer, can be estimated. A EC monolayer =Atot - Vgel with EC monolayerRgel Bead Tracer Method. FITC-labeled microspheres (200nm in diameter) were used as fluorescent tracer particles. Fluorescent traces of microspheres flowing through the gel were visualized on a Nikon TE300 inverted microscope and time-lapse micrographs acquired (Hamamatsu, ORCA-ER, Japan) and analyzed using OpenLab image acquisition software. Traces were obtained by using a long exposure during image acquisition which gives rise to streaks indicating bead path through the gel. While the flow is 3-dimensional, we used particles that remained in focus over their entire trajectory, thus ensuring that the flow was primarily in a single plane. Subsequently, tracer bead velocities were calculated from streak lengths and exposure times. Streak lengths were measure in ImageJ (public-domain image processing software, U.S. National Institute of Health, Bethesda, MD). Time-lapse Video Microscopy Time-lapse movies were recorded of endothelial cells during B-A flow induced sprouting angiogenesis. Endothelial monolayers were formed on collagen gel and B-A flow established as 182 described in METHODS. EC morphogenesis was visualized with an inverted microscope (Zeiss Axiovert 200, Carl Zeiss, Germany) equipped with an environmental chamber at 37 C and 5% C02. Images were acquired at 2 min intervals with the AxioCam MRm (Carl Zeiss, Germany) using AxioVision image acquisition software. Transmission Electron Microscopy (TEM) A method for processing microfluidic samples for TEM was developed. Briefly, glass coverslips were coated with a thin layer of PDMS. Coated glass slides were used in place of glass coverslips which are used to seal the PDMS device. All other setup and experimental procedures remain unchanged. All samples were fixed and processed for TEM in situ by perfusion of fixative and solutions via microfluidic channels. At the end of experiment, samples were fixed with Karnovsky's fixative (2.5% glutaraldehyde and 2% paraformaldehyde in phosphate buffer, pH 7.4). Samples were post-fixed with 1% osmium tetroxide (Electron Microscopy Sciences, Hatfield, PA) and 1.5% potassium ferrocyanide (Fisher Scientific Company, New Jersey) for 1 hour, dehydrated in cold ethanol and embedded in Epon-Araldite (Electron Microscopy Sciences, Hatfield, PA). Samples embedded in plastic were removed from the PDMS device and re-embedded in Epon-Araldite. Ultrathin sections were cut with an ultramicrotome, counterstained with uranyl acetate (Fisher Scientific Company, New Jersey) and imaged by TEM (Model 300, Philips Eindhoven, The Netherlands). p-FAK Y397 and FAK Antibody Pair Validation HMVECs were used in all antibody validation experiments. HMVECs were cultured on glass bottom dishes, fixed with 4% PFA and double stained (see METHODS) with pFAK and FAK antibody pair. Four different primary antibody pairs were evaluated to find a "compatible" pair (Table S1). 183 Compatibility was determined by visual inspection with selection criteria which were based on the presence of the classic staining pattern and colocalization of pFAK with FAK in focal adhesion complexes. Stained samples were imaged (Nikon TE300, Nikon Instruments Inc., NY; Hamamatsu Orca ER, Japan) and analyzed (OpenLab Software, Improvision, MA). Higher resolution images were obtained with a confocal microscope (LSM 510 Zeiss Axiovert 200M v4.0). Additionally, a requirement that the antibody binding epitope did not occur in the region of Tyr 397 was also imposed. Where available, information regarding binding epitope was obtained from the product supplier. The selected antibody pair was then subjected to a secondary cross-reaction test. Here HMVEC samples were processed for immunolabeling according to METHODS, labeled with primary antibody "A" and incubated with the secondary antibody for primary antibody "B". For e.g. EC labeled with mouse anti-FAK was incubated with a Goat anti-rabbit secondary. Supplementary movie: Dynamics during B-A transendothelial flow induced sprouting from an intact EC monolayer (link not yet available at the time of thesis submission) 184 Supplementary Figures VE-cadherin zo - 1 Dapi Dapi Merged Figure 4-8: Expression profile of adherens (VE-Cadherin, RED) and tight (ZO-1, GREEN) junctional proteins in HMVEC cultured on glass substrate (static culture) 185 12 - 10 - SMHUVEC HMVEC 6 S4~ CD ;' DCD 0 CD C, D W Sprout Length (pm) Figure 4-9: Sprouting response of microvascular (HMVEC) and macrovascular (HUVEC) endothelial cells to B-A flow. (A) Confocal images of HMVEC (LEFT) and HUVEC (RIGHT) (B) Distribution of sprout lengths for HMVEC and HUVEC monolayers subjected to B-A flow. 186 A B. intensity profile 105 dextran moleculesmolculsCO apical * channel , * 6 115 95 5 EC monolayer AC EKmonolayer 85 7 S75 C 65 :oll gen gel Dextran ... gradient in gel 55 - 45 0 50 100 150 200 250 300 350 400 Distance (pm) Figure 4-10: Estimation of EC Monolayer Diffusional Permeability (Pd). Barrier function to macromolecule was evaluated using 40kDa fluorescently-tagged dextran. (A) Schematic of diffusional permeability experimental setup. Medium containing FITC-tagged dextran is introduced into the apical channel. Intensity profiles are obtained perpendicular to the monolayer (black dashed-line) (B) A typical concentration profile of dextran along a lone perpendicular to the monolayer that is used to calculate Pd. 187 A. microfluic device B Streak micrograph Figure 4-11: Bead Tracer Method for Flow Characterization. (A) Low resolution fluorescent micrograph of gel cage region during a typical bead tracer experiments. White arrow indicates fluid flow direction and white spots are fluorescently labeled microbeads. (B) Higher resolution micrograph taken at long exposure time showing typical fluorescent streaks for flow velocity calculation. 188 Anti-FAK Anti-FAK (Y397) Par Antibody Pair # Anti-FAK antibodies Anti- FAK (Y397) antibodies 1 Mouse monoclonal ab105917 Rabbit polyclonal ab4803 2 Rabbit monoclonal ab76496 Mouse monoclonal Millipore 05-1140 3 Rabbit monoclonal ab40794 Mouse monoclonal Millipore 05-1140 4 Mouse monoclonal Millipore clone 4.47 Rabbit polyclonal ab4803 Table 4-1: FAK and p-FAK Y397 Antibody Evaluation. (LEFT) Antibody pairs screened. (RIGHT) Fluorescent micrographs of HMVEC stained for FAK and p-FAK Y397 proteins using four different pairs. 189 A 488/ 568 Channel Merged Figure 4-12: Negative controls and secondary antibody cross reaction test. (A) Confocal images of HMVEC monolayer incubated with Alexa Fluor 488 and 568 secondary antibodies and DAPI (BLUE) (Negative control test). (B) Confocal images of HMVEC monolayer for antibody cross reaction test. (TOP ROW) Mouse anti-FAK antibody incubated with Rabbit secondary and (BOTTOM ROW) Rabbit p-FAK Y#(& antibody incubated with Mouse secondary antibody. 190 g. Appendix IV: Concentration Polarization Concentration Polarization The transport of macromolecules across the EC monolayer can be hindered and thus result in an effective concentration difference across the monolayer. To determine if this phenomenon was applicable to this study experiments were performed to evaluate potential polarization across the cultured HMVEC monolayer. EC monolayers were formed as before (METHODS). Experimental medium was supplemented with FITC-labeled dextran and incubated with monolayer for 2 hours. This was done to ensure homogeneous dextran concentration (simulating uniform growth factor conditions prior to perfusion). Perfusate was also experimental medium containing dextran. Monolayers were perfused in either A-B or B-A flow directions. Fluorescent micrographs were taken after at least 2 hours of perfusion. ImageJ was used for micrograph analysis. In ImageJ fluorescent line intensity were obtained for lines drawn perpendicular to the EC monolayer extending from the apical channel across the endothelial monolayer and through the collagen gel. Profiles were visually inspected for any noticeable intensity/concentration changes across the EC monolayer. Concentration Polarization: Transport Model in FEMLAB. Furthermore, a simplified model was formulated to describe the transport of a freely diffusible solute across the EC monolayer using commercial finite element software, FEMLAB. In FEMLAB the mass and momentum transport problem was solved using Brinkman Equations and Convection and Diffusion Chemical Engineering Modules. 191 Model Geometry. The model geometry and dimensions for the specific microfluidic device was generated in COMSOL (Figure 4-13). U .;'AA -44lUp W ke k QW n -U t PDMS POST EC monolayer qL Gel channel I- PDMS POST Figure 4-13: Device geometry in COMSOL Microfluidic device geometry (showing region of interest, "gel-cage" and endothelial monolayer) generated in COMSOL for a mass and momentum Finite Element Model of flow across "gel cage" with an endothelial monolayer on one surface of the gel. (A) Snapshot of COMSOL window showing geometry in mesh mode. (B) Boxed region in (A) at higher magnification. Boundary Conditions. Pressure boundary conditions were specified at the inlet and outlet ports. For example, in simulations for basal-to-apical transendothelial flow, the pressure was specified at the basal channel inlets (Po) and apical channel outlets (P1) ports where Po is greater than P1. Concentration boundary conditions were specified at the inlet ports. Gel and Endothelial Monolayer Domain. For the purpose of this model, the endothelial monolayer was treated as a thin layer with hydraulic permeability (Lp) and diffusive permeability (Pd) which were used to calculate model constants. The gel region was modeled as a porous matrix with an 192 associated Darcy permeability (Kgei) which was determined experimentally. The diffusion coefficient (D) for 40kDa dextran in collagen matrix was also obtained experimentally. Drag reflection coefficient (sigma, a). In COMSOL, the selectivity of the endothelial monolayer based on molecular radius was defined by multiplying the x-velocity component in the convection diffusion module by (1-a). Values for a range from 0 to 1, where a value of 1 implies that the membrane is impermeable and 0 implies that the solute crosses as easily as water (259). Typical published experimental values and the model prediction for a based on molecular radius is shown in Figure 4-14. For 40kDa dextran, a predicted average value for a of 0.4 is obtained (260). 1 0.9 C 0.8 a) C.) 4- ci) 0 C.) C 0 0 + 0.7 0 0.6 a) 0.5 U) 0) ~0 '7 0.37 - 0.43 0.4 Eqn (18) Bassingthwaighte r = 7.9 nm U) -- 0.3 0 U) -<) 0.2 - l + 0.1 0 + _ I 0 1 - r =7 nm Expt. Data Kellen & Bassingthwaighte 20 03 70kDa dextran - BAEC, Demaio et. al 20 04 Albumin - PAEC, Suttorp et. al 1988 7OkDa dextran - BREC, Demaio et. al 2C0 04 Eqn (18) 4OkDa dextran . . . I I I I i I I I I I I II I I I I I I I I I I I I 2 3 4 5 6 7 8 r molecular radius nm 193 Figure 4-14: Solute drag reflection coefficient Graph (solid line and experimental data points) reproduced from (260), (261). Curve for rp = 7 nm was generated based on equation 18 in (260), single pore analysis. Additional data points were obtained from experimental results published in (262) and (263). Estimated values of a for 40kDa dextran were obtained based on rs - 2.5 nm and rp = 7 nm and 7.9 nm. This value was not experimentally validated, but seems reasonable based on values reported (262) for larger molecular radii and more mature in vitro EC monolayers. It is reasonable to expect that monolayers cultured for shorter times with less mature junctions would be "leakier" and have a lower value for a (as shown in Figure 4-14, corresponding to a shift downwards for larger pore size, rp). Nonetheless, simulations were done with a range of values for a, to quantitatively determine any correlation with polarization distance and sieving coefficient (ratio Cbasal/Capical where C is solute concentration). 194 10 Pecletmax = UmaxPd o B-A Flow sigma 0.95 * B-A Flow sigma 0.8 + B-A Flow sigma 0.5 a=0.8 a * A-B Flow sigma 0.95 * B-A Flow sigma 0.8 Kgel low B-A Flow sigma 0.8 Dgel high a = 0.5 0 0 0 0.01 0.001 0.0001 * ++ :+ -+ + ++ 0.1 1 ' 10 100 1000 Peclet # Peend 0=(1-sigma)*(UfijPa) U.I Figure 4-15: Predicted Relationship between EC Monolayer Sieving Coefficient and Peclet Number Result from FEMLAB simulations showing the predicted experimental range of the sieving coefficient (shaded region). Vertical dashed line indicates maximum Peclet number based on experimental estimates of monolayer diffusional permeability (Pd) and maximum filtration velocity (Umax). The main objective of these "in silico" experiments was to examine the operating range for flow experiments with regards to concentration difference across the EC monolayer, here represented by sieving coefficient (Cbasal/Capical) monolayer parameters, function of Peendo Peendo = The Peclet number (Peendo) was defined in terms of endothelial (1-a)*(UfiIt/Pd). The predicted correlation for sieving coefficient as a for different values of a is summarized in Figure 4-15. Based on a a of 0.4 and 195 maximum Peendo) ~ 6, the predicted operating range was obtained (green boxed region) Figure 4-15. 400 Pd= 0.5 Ca CaCU 350 300 0 Pd.: -+-1.OOE-08 -U-1.OOE-06 1.OOE-04 -+"-1.00E-05 1.OOE-07 250 200 CO 150 Ca 100 0 50 0 0.001 . I . II- ! 0.01 . . . . ... i 0.1 I I . .- -i . . . . . ... i 1 10 . . . . . ... i 100 I . I . . .. , 1000 Pecletendo Peendo = (1-(Y) Ufilt/Pd Figure 4-16: Predicted Relationship between Polarization Distance and Pecletendo Result from FEMLAB simulation showing concentration polarization boundary layer thickness as a function of Peclet number based on endothelial monolayer Pendo during B-A flow for a = 0.5 and indicated Pd values. The polarization distance was also determined as a function of Peendo) and the results summarized in Figure 4-16. As expected, the concentration polarization distance decreases as Peendo increases. 196 Results from concentration polarization experiments however did not show polarization of the EC monolayer due to flow and suggest that there is no selectivity to 40 kDa dextran. The discrepancy between model prediction and experimental results may be due to imprecise model parameters. For example estimates for a were not validated using the current experimental setup. However, intuition, confirmed by numerical simulation, tells us that although B-A flow would lead to higher concentrations at the basal membrane (i.e. for a "selective" monolayer), it would also produce a gradient that would discourage sprouting in that the concentration would fall in the direction of cell migration Figure 4-17. 1.30E-06 monolayer 1.20E-06 =0.5 Peendo S1.10E-06 ed -- 0.775 2.57 0--3.375 0 1.OOE-06 U 9.OOE-07 0 8.OOE-07 7.OOE-07 6.OOE-07 - 0.0086 ' ' 0.0087 0.0088 0.0089 0.009 0.0091 0.0092 0.0093 Distance (m) Figure 4-17: FEM solution for solute concentration as a function of distance 197 Concentration polarization results obtained from FEMLAB simulations of basal-to-apical flow with the indicated endothelial monolayer properties (a = 0.5 and Peend 0.775, 2.57 and 3.375). (Inset) A schematic that shows a section of the endothelial monolayer, gel region and dashed-line for evaluating solute concentration as a function of distance. 198 h. Appendix: Immunolabeling Protocol for Microfluidic Samples 1. Fix samples with 4% PFA - 30 minutes. 2. Wash thoroughly with 1X PBS (w/o Ca 3. Day 1: Primary Antibody a. 2 + or Mg2 +). Permeabilize sample with 0.1% Triton-X for 10 minutes (handle on 4 devices at a time - perfuse 60ul through each port) b. Wash with 1X PBS - twice c. Block with 10% BSA (100mg/ml e.g. 1.Lg BSA plus 11ml IX PBS) i. Perfuse channels twice with blocking solution ii. Incubate for 2 hours at room temperature d. Wash once with 0.5% BSA (e.g. 0.5 ml of 10% BSA plus 9.5 ml IX PBS) e. Antibody Incubation i. Recommended dilution for primary antibody is 1:100 ii. Prepare antibody in 0.5% BSA iii. For multiple labeling, prepare cocktail of different antibodies raised in different species (e.g. Rabbit VE Cadherin, Mouse PECAM, Goat Vinculin etc.) iv. Perfuse channels once with 60 microliter of antibody cocktail and add extra at ports to prevent samples from drying out v. Incubate for at least 16 hours at 4 C 4. Day 2: Secondary Antibody a. Wash samples thoroughly with 0.5% BSA i. Perfuse channel a couple times between each wash step ii. Wash 3X with 30 minute incubation at room temperature b. Secondary antibody incubation i. Recommended dilution for secondary antibody is 1:200 ii. Prepare antibody in 0.5% BSA (in the dark) iii. For multiple labeling, prepare cocktail of different species and color conjugated secondaries (e.g. donkey anti Rabbit-Alexa 488, anti Mouse-Alexa 568 etc.) iv. Incubate for 2 hours at room temperature (cover samples with Al foil) 199 c. Wash samples thoroughly with 0.5% BSA i. Perfuse channel a couple times between each wash step ii. Wash 3X with 30 minute incubation at room temperature (final wash step use 1X PBS) d. Final Step: Counter stain i. Prepare Dapi (1:1000) and Phalloidin (1:50) in PBS ii. Incubate for 1 hour at room temperature 200 Chapter 5: Concluding Remarks and Future Directions Ross G. Harrison, one of the pioneers of cell culture models wrote in 1907, "the immediate objective of the following experiment was to obtain a method by which the end of a growing nerve could be brought under direct observation while alive, in order that a correct conception might be had regardingwhat takes place as the nerve fiber extends during embryonic development from the nerve center out to the periphery." Like many scientific pursuits his work was motivated by an existing debate - regarding the growth and development of the nervous system - and would only be settled by irrefutable experimental findings. A glimpse of the process would reveal clues to underlying mechanisms which could prove or disprove his theory. The potential for new scientific breakthrough was quickly realized and in the years to follow isolated cells and tissue were used as model systems to investigate processes relating to health and disease. The ultimate challenge lies in replicating the native cell/tissue environment ex vivo. The work in this thesis shares a similar motivation and sought to contribute to the growing field of in vitro model development for scientific advancement and demonstrate their implementation in studies relating to vascular tissue engineering, vascular mechanobiology, ophthalmology and cancer research. a. Summary of Thesis Contributions This thesis addresses the need for physiologically relevant in vitro models that replicates critical components of the in vivo microenvironment. It documents the development of a novel microfluidic- based 3D cell culture platform and demonstrates its subsequent use in different biological studies. 201 Novel microfluidic-based 3D cell culture technology (subject of CHAPTER TWO) In vitro models offer enormous potential for gaining new insights into complex in vivo phenomena. One of the central contributions of this thesis is the development of novel microfluidicbased 3D cell culture platforms which was demonstrated to be an important tool for different biological studies. We have developed a novel microfluidic-based system that for the first time is capable of mimicking many of these complexities on a single in vitro platform. The integration of 3D scaffolds (biologically-derived or synthetic) and microfluidic networks permits the control of the fluidic environment with the benefit of a more in vivo -like 3D micro-architecture and high-quality imaging capabilities for dynamic studies. Due to the unique construction of the system, fluid composition and pressure can be controlled on the two sides of a central gel region, making possible a platform that is able to control (1) surface shear stress, (2) interstitial flow through the matrix (3) gradients in chemoattractants, (4) properties of cell culture scaffold and (5) simultaneously monitor cells in real-time. With this platform, biochemically induced angiogenic sprouting from an endothelial monolayer formed on a gel such as collagen and peptide was demonstrated. We were able to visualize in real-time growing vascular network including tip cell dynamics, cell division and migration. The ability to follow and capture these dynamic processes in real time provides insights not possible through single images taken on the order of hours or days apart. Furthermore, of particular relevance to tissue engineering community, we demonstrated that endothelial cells when cultured for several days can assemble into vascular networks with open, perfusable lumen structures. 202 The vascularization potential of a class of synthetic peptide hydrogels was also examined within the microfluidic-based 3D cell-culture device, (APPENDIX II). Experiments with synthetic peptides (RAD16I and RAD16II) for the endothelial sprouting assay demonstrated that the angiogenic response, in particular, the degree of invasion and sprout formation, was very low compared to the widely used rat tail type I collagen gels. However, functionalized peptides PRG (RGD binding motif) and KLT (mimics VEGF helix region, activate VEGF receptor) when added to RAD161 promoted HMVEC invasion and the formation of capillary-like structures. To our knowledge, this thesis is the first to demonstrate the creation of a vascular network and subsequent perfusion in a microfluidics-based 3D cell culture system. This work is being continued as a part of the newly established Science and Technology Center at MIT (Director, Dr. Roger Kamm) to generate biomachines. Given the large interest in understanding how to modulate vascularization, the results obtained from this work can potentially be of interest for applications in tissue engineering where pre-vascularized scaffolds may be essential. Alternatively, vascular networks could be generated and then used as a test bed to study interactions with different cells types. For example, the interaction of an in vitro generated endothelium with circulating cancer or immune cells. The physiological relevance of 3D cultures and the numerous advantages offered by miniaturization have opened the doors for several biological studies with application to a wide variety of diseases. This platform technology has been used to launch several new studies in cell migration, interactions between endothelial cells and tumor cells, axonal guidance, and endothelial cell interactions with mesenchymal stem cells. The established platform and subsequent modifications have formed the basis for newly funded programs from, NCI ICMAT, GRI, NUS Innovation award, and much fruitful collaboration (APPENDIX I). 203 Model for Aqueous Humor Outflow (subject of CHAPTER THREE) We developed a new in vitro cell culture-based model and conducted proof-of-principle experiments which demonstrate its applicability for investigating AH outflow dynamics. A key feature of the in vivo inner wall endothelium, giant vacuoles, was replicated in our system and its dynamics could be monitored in real-time. Furthermore the mechanism of aqueous humor outflow dynamics across the inner wall remain largely uncharacterized however with our system it is now possible to label fluid path as demonstrated by hydrodynamic filtration pattern experiments. Consequently, for the first time fluid flow can be visualized in a model of the inner wall endothelium in real-time thus providing a unique tool for future investigations. Furthermore, unlike previously reported models, here hSCEC are cultured on 3D hydrogels instead of 2D filter membranes for perfusion. It is widely accepted that in vitro culture dimensionality is important and that 3D cultures narrows the gap between in vitro models and live tissue (206), (124). Of particular importance is the juxtacanalicular region that lies adjacent to the IW endothelium can only be modeled in cultures with 3D capability. Consequently, this aspect of the trabecular outflow pathway cannot be readily addressed with current models (191), (192). Moreover, independent studies highlight the various synergistic interactions that occur with the trabecular outflow tissue that ultimately impacts the regulation of AH outflow dynamics (177), (180), (178), (194), (193), (195), (196), (197), (198), (199). Following this line of reasoning, our microfluidic-based platform sets the stage for future investigations where an integrative approach can be taken to investigate the physiology and pathophysiology of trabecular outflow tissue. Consequently, this study is a non-trivial improvement to currently available cell-based perfusion models (191), (192). 204 Moreover, new and effective strategies to modulate intraocular pressure and potentially treat POAG are needed. This platform presents a promising tool for investigating the effects of pharmacological drugs on cellular mechanisms which are responsible for modulating aqueous humor outflow facility. Mechanical regulation of angiogenesis (subject of CHAPTER FOUR) Many cellular processes are regulated by mechanical forces exerted via their microenvironment. In angiogenesis, soluble pro- and anti-angiogenic molecules are potent regulators. The in vivo scenario, however, encompasses the integrative effects of a population of endothelial cells influenced by both chemical and mechanical cues as they are induced to form sprouts. Here, with the aid of microfluidic technology, we present a novel mechanism for flowmediated mechanical regulation of angiogenesis by transendothelial fluid flow. We demonstrate that flow direction is sufficient to define an angiogenic ON or OFF state. The balance is tipped by forces generated at mechano-sensitive integrin-mediated adhesions. These results provide one explanation for the bias towards angiogenesis occurring from the venous side of the circulation. This thesis also contributes to the growing knowledge of the basic mechanobiology of endothelial cells with potential implication in tumor angiogenesis. The biochemical regulation of tumor angiogenesis is the most common school of thought. This work highlights that the underlying mechanism is more complex and that endothelial cells are continuously integrating both biochemical and biophysical cues. The synergy that exists increases the complexity for studying diseases (e. g. cancer) ex vivo and emphasizes the need for flexible multiparameter controllable platform without which progress towards successful therapies would be greatly hampered. 205 b. Future Research Directions Mechanobiology of basal-to-apical flow induced angiogenesis A proposed model for basal-to-apical flow induced angiogenesis was presented based on evidence from protein localization, phosphorylation and pharmacological studies. The following future studies would provide a deeper understanding of underlying molecular mechanisms. 1. Identify transendothelial flow induced phosphorylation site on VE-Cadherin and additional sites on FAK using anti-bodies and subsequent protein localization analysis. 2. Explore signaling directly downstream of FAK and VE-Cadherin that would promote a migratory phenotype, for example P120. 3. FRET technology is widely used for mechanobiology studies. By utilizing currently available FRET biosensors would provide spatial and temporal visualization of intracellular molecular interactions as it relates to mechanotransduction process involved in basal-toapical flow induced angiogenesis. For example success with FRET-based Src/FAK, Cadherin, Rac1 GTPase biosensors in live cells has been demonstrated (264), (265), (266). 4. Cells are equipped with an array mechanosensors with potential for cross-talk and cooperative interactions. Consequently, the potential role of other mechanosensors in basal-to-apical flow induced angiogenesis for example heparin sulfate proteoglycans (HSPGs) warrants further investigation. Recently, cell surface glycocalyx HSPGs in concert with integrin-mediated cell-matrix adhesions has been shown to mediate flow induced signaling of smooth muscle cells (SMC) suspended in 3D collagen gels (229). Aqueous humor outflow model 206 A new model and subsequent proof-of-concept experiments demonstrating formation of giant vacuole and labeling fluid path with bead tracers for reconstructing hydrodynamic filtration pattern were present. Work provides framework for model refinement and future experiments, including: 1. Quantitative studies of giant vacuole formation by human Schlemm's canal endothelial cells from normal and glaucomatous eyes. 2. Utilize transmission electron microscopy (TEM) to analyze details of morphological changes involved in giant vacuole and pore formation from microfluidic samples. 3. Explore the potential effects of paracrine signaling between hSCEC and trabecular meshwork cells (isolated from normal or glaucomatous eyes) by designing co-cultures studies. Here hSCEC can be cultured as before with TM cells suspend in the 3D gel. Interesting questions to explore: (a) does co-culture affect hSCEC monolayer quiescence? (a) Quantitatively, does co-culture (w/ normal or glaucomatous TM) affect giant vacuole formation by hSCEC? Vascularization Studies Microfluidic-based angiogenesis/vascularization assays are beneficial because compared to macroscale studies only a small amount of reagent is needed. Studies with self-assembling RAD16-I peptide gels and functionalized peptides PRG (RGD binding motifO/ KLT (mimics VEGF helix region, activate VEGF receptor) demonstrated an improvement in angiogenic potential for gel containing the functionalized peptides. Future studies with the MMP-2 cleavable variant may reveal even greater potential for generating vascularized synthetic scaffolds. Furthermore, subsequent strategies to stabilize networks should be explored. In a separate preliminary study, 1OT smooth 207 muscle cell precursor seemed to stabilize vascular structures generated by HMVEC in collagen gels. This co-culture or alternatively, media conditioned by 10T 1/2 cells may be explored further. Microfluidic Platform "Make everything as simple as possible, but not simpler." - Albert Einstein. Ease of use and applicability as a tool for conducting routine biological experiments dictate that the complexity of these devices must be kept to a minimum. Nevertheless, the microfluidic system presented here could be further enhanced by: 1. Implementing additional strategies to increase throughput. For example the use of photocrosslinkable polymers, patterned masks and on-chip photopolymerization strategies (267) could make gel loading process high-throughput. Furthermore, this strategy could potentially provide an option for preloading gels in commercially manufactured devices. However, issue regarding feasibility and shelf-life should be explored further. 2. Expanding device functionality, for example hypoxia studies with capability for control and generation and detection of simple or complex gradients of gas (e.g. oxygen) (268). With these expanded capabilities, further investigation into the competing effects (as it may exist in native tissues), for example of flow and gradients in oxygen and growth factors on cell function. 3. Upgrading to multiplexed systems including for example on-chip detection units or modules for quantitative analysis (ideally with spatial and temporal resolution) of cell secreted factors. Approaches using antibodies and optical detection methods developed by Love and colleagues (269) have reported success. An alternative strategy including the use of singlewalled carbon nanotubes as biosensors has been described (270). 4. Integration with a computerized flow or pressure control and monitoring platform. 208 c. Closing Thoughts "No man ever steps in the same river twice, for it's not the same riverand he's not the same man." -Heraclitus The journey, a cycle, the pursuit of knowledge... Robert Browning describes it perfectly "how sad and bad and mad it was - but then, how it was sweet." 209 Chapter 6: Works Cited 1. Feletou, Michel. The Endothelium. Part 1: Multiple Functions of the Endothelial Cells-Focus on Endothelium-Derived Vasoactive Mediators. 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