THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Searching and Accessing
Full Text Journal Articles
Nancy Clark, Director of Medical Informatics
Martin Wood, Director, Maguire Medical Library
FSU College of Medicine
2015
1
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Objectives for Session
• Learners will
– Do PubMed search using primary functions on
web
– Locate full articles from PubMed search
– Link out to full text articles within resources,
mobile and online
– Consider other ways to find journal articles
(mobile devices, web sites…)
– Save searches in NCBI
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Handouts
• PowerPoint
• Worksheet for activity
• Evaluations – Please complete Pre- Workshop
Assessment
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Off Campus Access
• IP authentication
• FSU CoM ID and password
– firstname.lastname
– $fsumed$xxxx [xxxx = last 4 SSN]
• Use links on library page
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Off Campus Access
Check College of
Medicine Username
and log in
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Username and Password Issue?
• If your user name and password doesn’t work…
• Regional Campus Faculty: Call your regional campus
IT coordinator
• All others: Call the Central Campus IT Office
(850)644-3664
7:30 AM to 6:00 PM Monday – Friday
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Quick Training for PubMed
Link to PubMed
Tutorials
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
What is MEDLINE?
• Database of bio-medical journals (medical, dental,
nursing, veterinary, …)
• Old Index Medicus database
• Service of National Library of Medicine (NLM)
• 5,271 biomedical journals, most are peer reviewed
• Nearly 18+ million citations (around 70,000
new/month)
• Back to 1860s (primarily back to 1950s)
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
What is MEDLINE?
• Articles are indexed by Real People.
• Terms are assigned that come from a
Controlled Vocabulary (Thesaurus) called
MeSH (Medical Subject Headings).
• MeSH includes sets of subheadings that apply
to each term and uses markers to indicate
which terms reflect the main focus of the
article.
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Where to Search MEDLINE?
• Pubmed (NLM
interface)
• OVID
• MD Consult
• Merck Medicus
• Medscape
2015
• Links to
– Full text journal
articles
– Books
– EBM databases
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Goal of Journal Search
A Few Good Articles
Full text in as few clicks as possible
2015
11
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Go to PubMed
• Under Quick Links
• Click on Pubmed
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Alternate Option
• Use Search Engines
to start Pubmed Search
• Type in Terms and start
Search
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Get a Free NCBI Account. Why?
• Alerting service
– Sends TOC of latest journals
– Sends results of searches updates
• Save searches
• Save collections of articles
• Filters which break down your results for you
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
First search of the evening: Author
search
• Use initial(s) most frequently used by author
• After 2002, full names (when included in the
journal itself) may be used
• May search multiple authors on one search
line
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Example of author search: Search for articles by
Hurt MM and click the “Search” button
Hurt MM
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Let’s take a look at one article
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Abstract View
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
MeSH Terms
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
MEDLINE View
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Direct Link to Full Text:
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
PubMed tutorial
• 1 minute tutorial on a simple subject search
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Subject Search
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
PubMed MEDLINE
Filter (Limit) Results
• Left Side
• Filter by
• Article Type
• Text Availability
• Publication date
• Species
• Type research
• Language
2015• …
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Limits Results
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Details – scroll down
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Search Strategies
• Limit search
– By type of article
– By date
– By age group
– By language
2015
• Phrases in quotes:
“focal nodular hyperplasia”
• AND, OR, NOT,
parentheses
“medication errors” AND
“quality improvement”
NOT (ambulatory OR
“nursing home”)
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
•
•
•
•
Types of Articles
Review Articles
Editorials
Letters
Meta-Analysis
– Systematic reviews
• Clinical Guidelines
2015
• Original Research
–
–
–
–
–
–
–
Case Studies
Case Control
Time Series
Cross sectional
Cohort
Control trials
Randomized Control
Trials
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Advanced Search
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Using Your Search History
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Put a reference in the Clipboard
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Clipboard
• As you search
• Add articles to Clipboard
• Collect all the good articles there
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Email Clipboard
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Follow the link to the article
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
If Link Does Not Work…
• You will see this message
• Before requesting Interlibrary Loan, do the
following.
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Search Google Scholar for Title
• Searches Pubmed, some
of our content, links to
full text
• In Search Engines box
• Search for article title
• Click on Title
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Saving Articles
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Interlibrary Loan
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Other Journal Options
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Pubmed Mobile Interface
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Browzine (Tablets and Phones)
• Journal e-reader
• Select most FSU COM
Journals to read
• Look like journals
• Alert you to new
articles
• Allows saving articles to
read offline
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Follow Links to Articles in Dynamed
• In your default browser, Open the Medical
Library
• Log into Off Campus Access
• Open Pubmed
• Minimize
• In another tab, open Dynamed.
• Links will take to Pubmed with buttons.
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Exercise
• Write a clinical question
• What kinds of articles do you want to answer
this question
• Locate first 10 articles on search
• Find the full text articles
• Print one of the full text articles or email the
articles to yourself
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Open exercises: topics from
group
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Review of great Pubmed features
• Details
• Limits/filters
• Advanced Search
– History (combine searches)
• Related articles
• View in Abstract View to find full article
• Use NCBI to save searches
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Using NCBI
Register and get a Username and
Password
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Why get NCBI Account?
• Save searches
• Save citations in My Bibliography
• Automatically update and e-mail search
results from your saved searches
• Filter search results
• Highlighting search terms
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Customize My NCBI
•
•
•
•
•
2015
Tutorials: http://www.nlm.nih.gov/bsd/disted/pubmed.html
Create Alerts (which saves your search)
Saving References
Customizing the Filters
Highlighting Search Terms
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Create Alerts
• Develop a search.
• Click on ‘Create Alerts’.
April 29, 2008
2015
Medical Informatics Seminar Session 6
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Creating Alerts
• Give name and
Save
• Complete form for
email notification
• ‘My NCBI’ puts the
search in your list.
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Saving References (1)
• Develop a search.
• Check the references you want to save.
• Click on ‘Send To’ and select ‘Clipboard’.
April 29, 2008
2015
Medical Informatics Seminar Session 6
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Saving References (2)
• Go to the ‘Clipboard’
• Click on ‘Send To’ and select Collections.
2015
61
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Saving References (3)
• Tell My NCBI what to call
the collection
• Or Append to an existing
collection
April 29, 2008
2015
Medical Informatics Seminar Session 6
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Saving References (4)
• To see the collection
or saved search, click
on ‘My NCBI’ >
Collections
• Can download
collections into a
reference manager
such as EndNote or
RefWorks.
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Customizing the Filters
1. Click on ‘My NCBI’
2. ‘Manage Filters’
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Customizing the Filters
• Select from Popular, or Search in Properties.
Create a Custom Query
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI – Highlighting Search Terms
• Click on ‘NCBI Site
Preferences’.
• Click on ‘Highlighting’
• Pick colors
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Have Journal Contents Sent (1)
1. Main Pubmed Page: Journals in NCBI Databases
2. Enter a general subject term, e.g. “New England
Journal”, then ‘Go’.
3. Click on a journal title to get information about that
journal.
4. Check Journal and
Add to Search builder
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Have Journal Contents Sent (2)
5. Click on ‘Search PubMed’.
6. Click on ‘Create Alert’, name it, and set up email
as earlier.
7. You will be notified when new articles are
published in these journals.
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Links to Other NCBI Databases
• NCBI has other databases
that link to PubMed.
(examples: CoreNucleotide,
Gene, HomoloGene,
Protein, Protein)
2015
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summary
• Use Pubmed to Search for Articles on your
topics, My NCBI to manage
• Link through Dynamed or uCentral MEDLINE
search
• Use “Find @ FSU” button to find articles
• If no button: Google Scholar > Interlibrary loan
• Any journal article you need, we will get
2015
71
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
The End
• Practice
• Call or e-mail us for individual help
850-644-3883
MedLibrary@med.fsu.edu
2015
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