HIV Activity Packet What you will find in this packet: 1. Explanation of packet (page 1) 2. Instructions (page 1) 3. Activity (begins page 2) Part I: Explanation of packet Before completing this assignment, students should first learn about HIV and AIDS – specifically the life cycle and treatment options, along with important concepts in genetics and immunology. The purpose of this packet is to reinforce biological concepts while practicing statistical principles that will be tested on the AP Exam. In this packet students will an in-class exercise and a homework assignment. Additionally, students will get to take on the role of doctors, which is sure to capture their attention. Part III: Instructions To set up: Print off copies of all worksheets. Place “Pathology Lab Results” at the front of the classroom. Students should work in groups of 4. Give one copy of both the “Patient Information Worksheet” and the “Medicine Data Table” to each group of 4. In this activity, students will be analyzing HIV+ patient histories, performing t-tests and chi square tests, and prescribing treatment options. After completing the assignment, students should complete thehomework assignment to each student. Part IV: Activity Worksheet list: 1. 2. 3. 4. 5. Pathology Lab Results (place a few copies at the front of the classroom) Patient Information Worksheet (one copy per group of 4) Medicine Data Table (one copy per group of four) HIV and Data Analysis Activity (one copy per student) Homework Assignment (one copy per student) 1 Pathology Lab Results: simulating lab at doctor’s office Patient Information: #48392 CJ Blue Tested for: Platelets White Blood Cells (WBCs) T-cell count Red Blood Cells (RBCs) Glucose Hemoglobin Amount: 100,000/mL 5700 cells/µL 431 cells/mm3 5.1 mil cells/µL 98 mg/dL 13 gm/dL Patient Information: #277948 Naomi Green Tested for: T-cell count Platelets Red Blood Cells (WBCs) White Blood Cells (RBCs) Hemoglobin Glucose Amount: 130 cells/mm3 234,000/mL 5.7 mil cells/µL 8,957 cells/µL 17 gm/dL 130 mg/dL Patient Information: #920938 Cynthia Orange Tested for: Red Blood Cells (RBCs) Glucose T-cell count White Blood Cells (RBCs) Platelets Hemoglobin Amount: 6.1 mil cells/µL 77 mg/dL 395 cells/mm3 7,723 cells/µL 309,000/mL 9 gm/dL Patient Information: #156309 John Red Tested for: Platelets T-cell count Hemoglobin White Blood Cells (RBCs) Red Blood Cells Glucose Amount: 276,835/mL 175 cells/mm3 10 gm/dL 4,714 cells/µL 6.1 mil cells/µL 99 mg/dL 2 Patient Information Worksheet (one copy per group) Patient #1 Information The patient’s name is John Red. He was born on July 8, 1960 in North Carolina. He is 6’2” and weighs 180 pounds. He had a tonsillectomy (tonsils removed) when he was 8 years old. His grandfather had lung cancer. His dad has heart disease and had a heart attack when he was 60, but survived. His twin brother had a stroke when he was 33. His blood pressure today was 120/80 mm Hg. His heart rate is 75 bpm. He is an accountant who liked to play sports and hike in his free time. He is currently suffering from Kaposi’s Sarcoma, which is an opportunistic infection that comes when someone’s immune system is lowered due to HIV/AIDS. Kaposi’s is a type of cancer that causes legions on the body. Today he has legions in his mouth. Patient #2 Information The patient is CJ Blue. He is 5’7” and weighs 198 pounds. He was born on December 29, 1989 in New York. His dad suffers from anxiety. His mom has arthritis. His grandfather has heart disease. He previously had an appendectomy (appendix removed). He takes Flonase for asthma. His blood pressure today was 120/80 mm Hg. His heart rate is 100 bpm. He is a graduate student at a university, who enjoys video games and web design. Today he has a flu-like illness. He had been taking Nyquil for a few days because he thought he had the flu. However, his HIV test just came back positive, so he knows it is not the flu. Patient #3 Information The patient’s name is Naomi Green. She was born on January 1, 1981 in California. She is 5’3” and weighs 90 pounds. Her grandmother had colon cancer. Her dad and sister have diabetes. Her mom has heart disease. Her blood pressure today was 140/90 mm Hg. Her heart rate is 100 bpm. She is a stay at home mom, who enjoys planning philanthropic events and school fundraising. She is suffering from wasting syndrome, which means she is losing weight and muscle mass. Wasting syndrome is common with HIV and AIDS. Patient # 4 Information The patient is Cynthia Orange. She is 5’10” and weighs 180 pounds. She was born on September 13, 1981 in Texas. Her grandmother had breast cancer. Her dad has type II diabetes. Her younger sister had leukemia but survived. She previously had surgery for a torn ACL while playing basketball. Her blood pressure today was 140/100 mm Hg. Her heart rate is 68 bpm. She is a scientist, who enjoys bird watching in her free time. Today she is suffering from joint pain and swollen lymph nodes. She had been taking ibuprofen because she did not know she had HIV until her test came back positive today. 3 Medicine Data Tables: (one copy per group) Medicine A: NRTI (nucleoside reverse transcriptase inhibitor) Gender Patient 1 Patient 2 Patient 3 M F F D.O.B. 1989 1957 1978 T-cell count before treatment (cells/mm3) 302 417 212 Follow-up T-cell count after 3 months (cells/mm3) 306 417 213 T-Cell count before treatment (cells/mm3) 436 315 281 Follow-up T-cell count after 3 months (cells/mm3) 440 315 282 T-cell count before treatment (cells/mm3) 404 213 340 Follow-up T-cell count after 3 months (cells/mm3) 409 219 347 Medicine B: PI (protease inhibitor) Gender Patient 1 Patient 2 Patient 3 F M M D.O.B. 1963 1993 1984 Medicine C: HAART therapy (2 NRTIs and 1 PI) Patient 1 Patient 2 Patient 3 Gender D.O.B. M M F 1999 1977 1950 Medicine D: Antibiotic Patient 1 Patient 2 Patient 3 Gender D.O.B. M F F 1998 1968 1940 Before treatment (cells/mm3) 206 300 447 4 Follow-up T-cell count after 3 months (cells/mm3) 209 300 447 Name: __________________________ Date: ___________________________ HIV and Data Analysis Activity Part I: Patient Medical Record 1. Congratulations, you are now doctors! Working in groups of 4, you must analyze your patient’s histories and diagnose them with the appropriate conditions. Additionally, you must also determine their current symptoms. Use the following charts to gather all the necessary information. 2. Everyone in the group is responsible for filling in the medical record for 1 patient. Do not duplicate patients so that they all get the help they need. 3. Review: HIV infects _________ a. Heart cells b. T-cells c. Red Blood Cells 4. What are potential consequences of having a weakened immune system? Patient Medical Record PATIENT INFORMATION First M.I. Last Name: Month Day Year Date of Birth GENERAL INFORMATION Temperature Weight Heart Rate Blood Pressure Normal: 98.6 °F Normal: Varies Normal: 60-100 bpm Normal : 120/80 mm Hg 5 FAMILY HISTORY PREVIOUS SURGERIES CURRENT MEDICATIONS CURRENT SYMPTOMS/OPPORTUNISTIC INFECTIONS BLOOD TEST RESULTS (go to Pathology Lab to obtain results) Date: / / Normal Range 70 - 110 mg/dL 12 - 18 gm/dL 4,300 - 10,800 cells/µL 4.2 - 6.9 million cells/µL 150,000 - 350,000/mL 500-1000 cells/mm3 Glucose Hemoglobin White Blood Cells (WBCs) Red Blood Cells (RBCs) Platelets T-cell count Normal? Y/N CURRENT CLASSIFICATION (T-cells/mm3) Healthy >500 HIV+ 500-200 Review: What are a few differences between HIV and AIDS? 6 AIDS <200 Part II: Prescribing Medication As you can see, patients diagnosed with HIV and AIDS have a broad range of symptoms. Now it is time to prescribe a treatment option. Dr. ___________________ Prescription Form Medicine A: NRTI (nucleoside reverse transcriptase inhibitor) – this medicine inhibits reverse transcription, so that viral RNA cannot create cDNA within the host cell. Medicine B: PI (protease inhibitor) – This medicine prevents an enzyme (called protease) from cleaving long HIV protein strands into smaller proteins, which are sent off in vesicles to infect other cells. Medicine C: HAART therapy “cocktail” (2 NRTIS and 1 PI) – a combination therapy. Medicine D: Antibiotic – kills bacterial infections in the body. 1. Based on the descriptions of the medicines, which do you think will be most effective? Why? 2. Clinical trials were run for each of the 4 medicines listed above. The results are listed in the “Medicine Data Tables” which have been provided to your group. 3. Divide up the 4 medicines among each of the 4 group members. 4. In order to determine which medicine is most effective in treating HIV/AIDS, a data analysis test must be performed. In this case, we will use a t-test. Why is a t-test the appropriate test? 7 5. Perform the t-test for your assigned medicine. *** use p = 0.05*** H0 (null hypothesis): (In this example, the Specified mean difference (µ) is 0. ) Ha (alternative hypothesis): Total difference (add up differences for all patients between ‘ before’ and ‘after’ treatment): ________ Mean difference: ________ (total difference/number of patients) Standard Deviation: Standard Error: T – value = T –value = (mean difference) – (specified mean difference) Standard Error D F= n-1 = ______ Now find the α-value. α = ______________ How does α compare to the p-value of 0.05? _________________________ (hint: greater or less than) 6. Share the results with your group. Medicine A- t= ______ α = _______ Medicine B - t= ______ α = _______ Medicine C - t=_______ α = _______ Medicine D- t=_______ α = _______ is the α – value is the α – value is the α – value is the α – value 8 greater or less than p? greater or less than p? greater or less than p? greater or less than p? 7. Which medicine has statistically significant results (meaning it was an effective treatment)? 8. Did you predict correctly? If not, why do you think your medicine was not as effective? Part III: HIV treatments throughout the world Studies done in the United States show that HAART therapy is effective in the treatment of HIV. However, a group of researchers is trying to determine if HAART therapy will be effective in HIV+ patients in other countries. To test this, researchers collected the average t-cell counts after 3 months of HAART therapy for men and women in Scienceville, USA. These are the results they found: Location Scienceville, USA Scienceville, USA Gender Avg T-cell count after 3 months of HAART Therapy (cells/mm3) 440 451 Male Female Next, the researchers went to Medicineville, World. They tested the HAART therapy in 14 patients. Results: Location Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Medicineville, World Gender Avg T-cell count after 3 months of HAART Therapy (cells/mm3) 490 501 477 460 470 455 478 471 457 463 460 480 468 471 Female Female Female Male Female Male Male Female Male Male Male Female Male Female 9 1. A Chi Square Goodness of Fit test should be used to determine if the results observed in Medicineville, World are statistically similar to the results obtained in Scienceville, USA (expected results). Why would you use a Chi Square test and not a t-test? 2. Perform the Chi Square test. (𝒐𝒃𝒔𝒆𝒓𝒗𝒆𝒅 − 𝒆𝒙𝒑𝒆𝒄𝒕𝒆𝒅)𝟐 𝑿 =∑ = 𝒆𝒙𝒑𝒆𝒄𝒕𝒆𝒅 𝟐 Fill in the chart: Gender Observed Expected (O-E) (O-E)2 ((O-E)2)/E) X2 DF = n-1 = ________ = α = __________ How does the α-value compare to the p-value? 3. Was there a statistically significant difference between the two populations? If so, what reasons can you think of for why HAART therapy affected the patients in Medicineville, World differently than the patients in Scienceville, USA? 10 Name: ______________________ Homework Assignment: HIV Statistics The goal of this homework assignment is to learn more about HIV prevalence in the US and the World. Part I: HIV by Age in the US Source: http://www.cdc.gov/hiv/risk/age/youth/index.html Using this graph, answer the following questions. 1. What is the mean age of diagnosis? 2. What is the median age of diagnosis? 3. What is the mode age of diagnosis? 4. Describe the distribution of the graph (ex: skewed, bimodal, etc). 11 Part II: HIV throughout the US State/Dependent Area Number of Diagnoses of HIV Infection, 2011 California 5,973 Florida 5,403 Texas 5,065 New York 4,960 Georgia 2,522 Illinois 2,142 Maryland 1,783 North Carolina 1,672 New Jersey 1,567 Pennsylvania 1,545 Source: http://www.cdc.gov/hiv/statistics/basics/ 5. Use the following information to construct an appropriate graph that accurately displays the data. 6. Explain why you chose this type of graph. 7. Do you notice any trends? (For ex: geographic regions with high rates of HIV infection?) 12 Part III: HIV throughout the world Geographical region Number of children (014 years) receiving antiretroviral therapy Sub-Saharan Africa 495 700 Eastern and southern Africa 426 800 West and central 68 900 Africa Latin America and the Caribbean 17 000 Latin America 13 500 The Caribbean 3 500 East, South and South-East Asia 44 400 Europe and Central Asia 8 200 North Africa and 900 the Middle East Total 566 000 Estimated number of children needing antiretroviral therapy Percentage of children receiving coverage? 1 830 000 1 310 000 520 000 39 000 29 000 10 200 111 000 7 800 6 500 1 990 000 Source: http://www.who.int/hiv/topics/paediatric/data/en/index1.html 8. Determine the percentage of children receiving treatment in each area of the world and complete the chart. 9. What are reasons you can think of for why children in some world regions do not receive the treatment they need? 13