DNA AND GENETIC MATERIAL Griffith’s Experiments Frederick Griffith 1928 while creating a vaccine for a pneumonia- causing bacteria 2 types of bacteria S – kills mice R – harmless Griffith’s Experiments Frederick Griffith Group 1 – injects S bacteria, mice die Group 2 – injects R bacteria, mice live Group 3 – injects dead S bacteria, mice live Wanted to see if it was the bacteria or a reaction with part of the bacteria (capsule) Group 4 – injects dead S bacteria and live R bacteria, mice die Determines bacteria take up genetic information from dead S bacteria to make them Virulent. Virulent – able to cause disease Griffith’s Experiments Griffith’s Experiments Virulent – able to cause disease Vaccine – substance that is prepared from a killed or weakened microorganism and introduced into the body to protect the body against future infections by the microorganism. Transformation – a change in phenotype caused when bacterial cells take up foreign genetic material. Transformation The idea of transformation is how viruses work. A virus injects its DNA into a cell which is taken up by the nucleus and place into its own DNA sequence When the cell is copying DNA and making proteins, it makes new viruses as well. The viruses create a large enough population and destroy the cell to be released. Then infect other cells. Transformation If you would like more information, go to http://www.khanacademy.org/video/viruses? playlist=Biology Structure of DNA James Watson and Francis Crick – 1950’s determined the shape of DNA Double Helix – twisted ladder or twisted railroad tracks. Structure of DNA The 2 strands linked by nucleotides Nucleotide – subunit that makes up DNA Structure of DNA The 2 strands linked by nucleotides Nucleotide – subunit that makes up DNA 3 parts of a nucleotide deoxyribose sugar Phosphate group Base DNA – Deoxyribonucleic Acid Structure of DNA Bases – Adenine (A) - purine Thymine (T) - purine Cytosine (C) - pyrimidine Guanine (G) - pyrimidine Complimentary pairs – like puzzle pieces, two things that fit together, compliment each other. A-T, C-G (base-pairing rule) Structure of DNA Structure of DNA Each strand of DNA is complimentary to the opposite. If the first row is a strand of DNA, finish its complimentary strand below. ATCCGATCGAAGGTTTACGATCGGGTTAACA T Structure of DNA Others contributing to our knowledge of DNA Structure Erwin Chargaff – 1949, determined the amount of A and T were always equal and that C and G were always equal, however they varied from each other. A=T and C=G, but A-T was not the same as C-G Review Questions Summarize Griffith’s transformation experiments Name the 3 parts of a nucleotide Relate the base pairing-rule to the structure of DNA Explain why the 2 strands of the double helix are described as “complimentary.” Suppose a strand of DNA has a nucleotide sequence of CCAGATTG. What is the nucleotide sequence of the complimentary strand? Replication of DNA DNA Replication – process of copying DNA Step 1 DNA needs to be unwound and the 2 strands separated by DNA Helicase. Additional proteins prevent the two strands from reattaching. Replication forks - where the 2 strand separate and create a “Y” shape Replication of DNA Replication of DNA Step 2 At the replication forks, enzymes (DNA Polymerase) moves along strands adding nucleotides to the exposed bases according to base-pairing rules 2 new strands are formed. Replication of DNA Replication of DNA Step 3 DNA polymerase will remain attached until all the DNA has been copied and it is signaled to detach 2 new DNA molecules are formed Each has a brand new strand and an original strand. Replication of DNA Checking for errors Inevitably, errors will occur when copying and the wrong nucleotide will be added. DNA polymerase in addition to adding nucleotides will also proof-read the DNA If there is a mismatch the DNA polymerase will replace the error with the correct nucleotide. Normal error is 1 in 1 billion nucleotides. Each human cell has 6 billion nucleotide pairs. Replication of DNA Having multiple replication forks increases speed for replication Because DNA in eukaryotic cells is so long, it cannot be copied from one end to the other or it would take 33 days to copy. A human chromosome is duplicated in 100 sections that are 10,000 nucleotides long Due to this human DNA can be copied in 8 hours. Review Questions Describe the role of DNA Helicase in DNA replication. What are the 2 roles of DNA polymerase in replication? What is the effect of multiple replication forks on the speed of replication in eukaryotes? Review Questions Review Questions What did Griffith find in his experiments with the Streptococcus pneumoniae bacteria? What was the name of the process that was involved in changing Griffiths R bacteria into S bacteria? What are the 3 parts of a nucleotide? During which part of interphase is DNA replicated (from mitosis/meiosis unit)? Review Questions What did Watson and Crick discover? What is the complimentary sequence of the following DNA molecule: GCCATTG? What enzyme unwinds and unzips DNA? What enzyme is responsible for DNA replication and proofreading the new DNA strand? What is the benefit of having multiple replication forks along a DNA strand? Review Questions What bases are purines? Pyrimidines? If a human is made of 30% adenine, what percentage of DNA would be thymine? guanine? cytosine? How do you know? Review Questions Make sure you do review questions on slides 16 and 24-28 From genes to protein Decoding the information in DNA Traits are determined by the proteins that are built. Hair color, eye color, build, etc. RNA (ribonucleic acid) Differs from DNA – 3 ways 1. 1 strand instead of 2 2. made of ribose sugar backbone instead of deoxyribose 3. uracil (U) replaces thymine (T) From genes to protein Here is the story – information needs to be taken from DNA in the nucleus and turn it into a protein 1. DNA is copied in the form of RNA 2. RNA is transported to a ribosome 3. Ribosome is going to read the RNA and put proteins together. We will break it down in a little more detail, but to understand the rest, you need to know this much. From genes to protein Transcription – transferring info from DNA to RNA “scribe” – to write, “trans” - change from one to another Step 1 on previous slide Translation – making a protein “translate” – change form/language Changes info into a protein Step 3 on previous slide From genes to protein Transcription – change info from DNA to RNA RNA polymerase – an enzyme that transcribes DNA into RNA by attaching and adding complimentary RNA 1. RNA polymerase binds to the gene promoter – a specific sequence of DNA that acts as a “start” signal for transcription 2. RNA polymerase unwinds and separates DNA Transcription - RNA polymerase adds complimentary RNA nucleotides. From genes to protein Transcribe the following DNA sequence into RNA CGTATTAGAAC G From genes to protein From genes to protein When copying DNA, the entire sequence is copied, but when copying RNA only specific parts of the DNA are transcribed. How does the RNA Polymerase know where to start and stop copying? Start and stop codons. From genes to protein Transcription – in nucleus Translation – once RNA is made it is sent to the cytoplasm where translation will occur The RNA that takes the information from nucleus to ribosomes is called mRNA (messenger RNA) Codon – 3 base segments that code for amino acids. From genes to protein From genes to protein In 1961, Marshall Nirenberg, an American biochemist, deciphered the first codon by making an artificial UUU codon and it produced a protein made entirely of Phenylalanine amino-acid subunits. Scientists were later able to decipher other codons. Genetic Code – amino acids and “start” and “stop” codons that are made by each of the possible 64 mRNA codons. From genes to protein Quick review. DNA is transcribed (copied) into mRNA segements in nucleus mRNA leaves nucleus and is taken to ribosomes Ribosomes will read the mRNA and translate it into proteins. From genes to protein Translation Ribosomes read the mRNA tRNA (transfer RNA) – RNA molecules that recognize 3 base segments and bring specific amino acids to the ribosomes. Each type of amino acid has a specific tRNA that carries it to the ribosome. Anticodon – 3 nucleotide sequence on the tRNA that recognizes the codon on the mRNA From genes to protein From genes to protein Transcription / Translation From genes to protein Mutations can cause a nonfunctional protein Point mutation – mutations that change one or just a few nucleotides in a gene on a chromosome. Normal sequence DNA - TAC ACA CGT ATT mRNA AUG UGU GCA UAA Amino acid - Met Cys Ala Stop From genes to protein Substitution Mutation DNA - TAC ACA CGT ATT mRNA AUG UGA GCA UAA Amino acid - Met Stop Insertion Mutation DNA - TAC ACA CGT ATT mRNA AUG UGU CGC AUA A Amino acid - Met Cys Arg Ile From genes to protein Deletion DNA - TAC ACA CGT ATT mRNA AUG UG_G CAU AA Amino acid - Met Trp His Think of it in terms of a sentence: “THE CAT ATE” Turns into “THE ATA TE” no longer makes sense. Review Questions Distinguish 3 differences between RNA structure and DNA structure. Describe how RNA is made during transcription. What is the DNA sequence that would code for the amino acid for the codon CCU? What is mRNA and tRNA? What is a codon? Anticodon? Review Questions Define transcription and translation. What is the process of making proteins from mRNA? Where are anticodons found? What is a change in genetic code called? Mutations that change one or just a few nucleotides in a gene are called? Genetic engineering Genetic engineering – manipulating genes for practical purposes 4 steps of genetic engineering Cutting DNA Making recombinant DNA Cloning Screening Genetic engineering 1. Cutting DNA Isolate and cut the portion of DNA that codes for a certain trait In our example it is insulin (diabetes) 2. Make recombinant DNA – DNA made from 2 or more different organisms Human gene is added to bacterial DNA and inserted into bacteria cell to be produced. Genetic engineering Genetic engineering Genetic engineering 3. Gene Cloning – many copies of the gene are made each time the host cell reproduces. 4. Screening Isolation of the bacterial cells with the insulin gene. That segment of DNA can then be extracted and used. Genetic engineering Is genetic engineering good or bad? What are some examples of how genetic engineering are used? Genetic engineering in medicine Find malfunctioning gene, use a functioning gene to include in a medication In hemophilia, blood cannot clot Medications can use proteins that someone with hemophilia cannot produce and put it into a medication to help regulate the condition. Other examples Growth hormone – growth defects, burns, ulcers Genetic engineering in medicine Vaccines – a solution containing all or part of a harmless version of a pathogen. Genetic engineering in medicine There is a risk to vaccines If pathogen is incorrectly processed, you can infect someone with a dangerous pathogen Some of the substances used to store and and process the vaccine can cause adverse effects in the body. Genetic engineering in medicine Gene therapy – putting a healthy copy of a gene into cells of a person whose copy of the gene is defective. Cell is removed from patient Healthy genes are inserted Cells returned Cells will produce substance they were lacking Genetic engineering in medicine DNA fingerprint – a pattern of dark band on a photographic film that is made from an individuals DNA fragments. Each person has a unique DNA fingerprint Often used for DNA identification in CSI forensics or paternity cases. Genetic engineering in medicine DNA fingerprinting activity Genetic engineering in medicine Human Genome Project – Attempting to determine the nucleotide sequence of the entire human genome and to map the location of every gene on each chromosome. Human genome contains about 6 billion base- pairs and about 25,000 genes. Scientists have identified approximately 4,000 genetic disorders Genetic engineering in medicine Cloning How is it done? Is it good? Bad? Discuss. Review Questions What are 3 food crops that have been improved through genetic engineering Write a 1-page opinion paper on genetic engineering and cloning. Define recombinant DNA, gene cloning, vaccine, gene therapy, DNA fingerprint, Human Genome Project. _____ is used to identify individuals in paternity cases and criminal cases.