INTERACTIVE NOTEBOOK GUIDELINES Pencil ONLY Name, class, period on cover 1st page upper right corner put an A (free corner) Letter pages A-F (front AND back of page) Page “1” of numbering starts on 4th page of Notebook Go ahead and # 1-20 on top free corner of notebook Each page should have title unless noted otherwise COVER PAGE A <TITLE PAGE> INTERACTIVE NOTEBOOK GUIDELINES C-F Table of Contents Page Title 1-3 Roots, Prefixes, Suffixes 4 Biology lab safety rules 5 Safety Symbols 6-7 Safety Contract 8 Classroom Layout 9 Lab Safety Equipment Scavenger Hunt 10-11 Lab Equipment 12 Scientific Method Vocabulary 13 Data Graphing PAGE B <BLANK> PAGE C <TABLE OF CONTENTS> PAGE D <TABLE OF CONTENTS> PAGE E <TABLE OF CONTENTS> PAGE F <TABLE OF CONTENTS> PAGE 1 <ROOTS, PREFIXES AND SUFFIXES> PAGE 2 <ROOTS, PREFIXES AND SUFFIXES> PAGE 3 <ROOTS, PREFIXES AND SUFFIXES> PAGE 4 <BIOLOGY LAB SAFETY RULES> PAGE 5 <SAFETY SYMBOLS> PAGE 6-7 <SCIENCE SAFETY CONTRACT> PAGE 8 <CLASSROOM LAYOUT> PAGE 9 <LAB CLASSROOM SCAVENGER HUNT> LAB EQUIPMENT FOR SCAVENGER Fire blanket Shower First Aid kit Aprons Eyewash station Goggles Fire Extinguisher PAGE 10 <LAB EQUIPMENT> PAGE 11 <LAB EQUIPMENT> PAGE 12 <SCIENTIFIC METHOD VOCABULARY> PAGE 13 <DATA GRAPHING> PAGE 13 <DATA GRAPHING> D- Dependent variable R- Responding variable Y- y-axis M- Manipulated variable I- Independent Variable X- x-axis ALWAYS INCLUDE UNITS! PAGE 14 <CHARACTERISTICS OF LIVING THINGS> List all 8 characteristics and draw picture to go with them (must color!) PAGE 15 <HIERARCHY OF MULTICELLULAR ORGANISMS> 1. 2. 3. 4. 5. 6. Chemical Level- Atoms combine to form molecules Cellular Level- Cells are made of molecules Tissue Level- Consist of similar types of cells Organ Level- Made of different types of tissue Organ System- Consists of organs that work together Organism- Made of many organ systems that function to keep us alive PAGE 15 <HIERARCHY OF MULTICELLULAR ORGANISMS> PAGE 14 <CHARACTERISTICS OF LIVING THINGS> PAGE 15 <HIERARCHY OF MULTICELLULAR ORGANISMS> PAGE 16 <SCIENTIFIC METHOD FLOWCHART> I. Observation(s) o Using your 5 senses to gain information about the problem/experiment o Sound, Sight, Hear, Touch, Taste o Noting facts or inferences Descriptions o Qualitative (__________) or Quantitative (__________) Numbers (ex: color, smell) (can be measured) o List of Materials o What is the question or problem you want to answer? The Scientific Method 2. Hypothesis o A probable prediction based on your observations; your educated prediction o Must be something testable o Can be in an “If…., then…..” statement 3. Experiment: o To be a valid experiment, it must o Be a controlled experiment o Test only one variable at a time o Be repeated numerous times o Use random sampling o Use accurate records & measurements o Must be a controlled experiment. o Control = the norms to compare the thing being tested against; does not change o Variable = the thing that changes; the thing being tested Independent ____________ variable being acted upon; changed on purpose Independent Dependent ____________ variable that changes because the ____ Controlled ____________ variable stays the same; does not change o State the purpose of the experiment in “To determine…..” format o List the steps of the experiment; Betty Crocker Style o Step #1…Gather materials o End step…Record data o No 1st person o One action per # o Be clear & concise 4. Data: o Tables where data was recorded o Illustrations of experiment o Accurate, precise data graphs to present findings*** o Label all data & units! 5. Conclusion: o Restate hypothesis o Brief summary of what you did in the experiment o Was hypothesis right/wrong? Why/why not o Problems encountered o Ideas/suggestions for future experimenters PAGE 17 <PERIODIC TABLE- ELEMENTS OF LIFE> Glue in Periodic Table Highlight corresponding colors PINK YELLOW Oxygen (65%) Phosphorus (P) Carbon (18%) Sulfur (S) Hydrogen (10%) Calcium (Ca) Nitrogen (3%) Iron (Fe) somewhere on page put: Potassium (K) Sodium (Na) NOCH=96% PAGE 16 <SCIENTIFIC METHOD FLOWCHART> PAGE 17 <PERIODIC TABLE- ELEMENTS OF LIFE> PAGE 18 <PROPERTIES OF WATER> Add to diagram: δ+ and δ- on all atoms and show Hydrogen bonds (- - -) Color Oxygen=yellow Hydrogen=green Hydrogen Bonds=blue Universal _____________ Polar- (define) Hydrogen Bonds: Cohesion- (define; example) Adhesion- (define; example) Ice Floats, Heat of vaporization (sweat), High Specific Heat PAGE 18 <PROPERTIES OF WATER> Add to diagram: δ+ and δ- on all atoms and show Hydrogen bonds (- - -) δ+ δ+ δ+ δ+ δδ+ δ- δ+ Color Oxygen=yellow Hydrogen=green Hydrogen Bonds=blue δ Universal Solvent-dissolves many substances Polar- Unequal sharing of electrons; results in partial + and partial - sides Hydrogen Bonds: Cohesion- attraction of like molecules (rainsdrop, surface tension) Adhesion- attraction of unlike molecules (water on web, meniscus) Capillary Action-Ice Floats, Heat of vaporization (sweat), High Specific Heat PAGE 19 <MACROMOLECULES> Monomer-1 Polymer- sub-unit multiple units Formation of Polymers- Polymerization, Dehydration Synthesis, Condensation Reaction Removal of water molecule to form covalent bond H=green, O= yellow 4 groups of Macromolecules (list) Carbohydrates, Lipids, Nucleic Acids, Proteins PAGE 18 <PROPERTIES OF WATER> PAGE 19 <MACROMOLECULES> PAGE 20 <CARBOHYDRATES> Glue in image set Elements: C, H, O 1:2:1 ratio Monomer: Monosaccharide (glucose, fructose, galactose) Polymers: Disaccharide (2) Polysaccharide (many) Examples: cellulose, glycogen, starch Function: Short term energy storage and building material Food source: Pasta, bread, fruit, potatoes PAGE 21 <LIPIDS> Glue in image set Elements: C, H, O Monomers: Fatty acid chains, glycerol Polymers: Fats/Oils, Phospholipids, Steroids Examples: phospholipid, oil, ear wax Function: Long term energy storage, insulation, cushioning, waterproof Food Source: Oils, butter, animal fat PAGE 20 <CARBOHYDRATES> PAGE 21 <LIPIDS> PAGE 22 <NUCLEIC ACIDS> Glue in image set Elements: C, H, O, N, P Monomer: Nucleotide (sugar, phosphate, nitrogenous base) Polymers: DNA and RNA Examples: RNA, DNA, (ATP-single unit) Function: Genetic instructions and usable energy No Food Source PAGE 23 <PROTEINS> Glue in image set Elements: C, H, O, N Monomer: Amino Acid Polymer: Polypeptide chain Examples: hair, nails, muscles, enzymes Function: Storage, transport, regulation, movement, structure, enzymes Food Source: Meat, peanut, egg PAGE 22 <NUCLEIC ACIDS> PAGE 23 <PROTEINS> PAGE 24 <ENZYMES> Proteins that catalyze (speed up) reactions by lowering the activation energy Common Features 1. 2. 3. 4. Work best within range of temp and pH Make reaction occur faster NOT used up or changed in reaction; can be used over and over Substrate (reactant) specific: lock and key ENZYME-SUBSTRATE COMPLEX Substrate (reactant) enzyme Active site Products enzyme PAGE 24 <ENZYMES> PAGE 25 <CELL THEORY> 1. 2. 3. All living things are composed of cells Cells are the basic unit of structure and function in all living things New cells are produced from pre-existing cells Contributing Scientists Robert Hooke- Named cells, cork Anton van Leeuwenhoek- microorganisms (pond water) Matthias Schleiden- botanist, plant cells Theodor Schwann- animal cells Rudolf Virchow- cell division PAGES 26-27 <PROKARYOTE VS EUKARYOTE VENN DIAGRAM> 26 27 Prokaryotes Eukaryotes differences differences similarities PAGES 26-27 <PROKARYOTE VS EUKARYOTE VENN DIAGRAM> 26 27 Prokaryotes Eukaryotes differences Differences All single cellular pili similarities Cell membrane Cell wall Contain DNA Cytoplasm Flagella Reproduce Respond to environment Ribosomes Unicellular organisms Centrioles Contain nucleus Golgi apparatus Mitochondria May become specialized Have complex internal structures (membrane bound organelles) Some are singlecellular, some are multicellular PAGES 26-27 Words/phrases for Venn Diagram All single-cellular Cell membrane Cell wall Centrioles Contain DNA Contain nucleus Cytoplasm Flagella Golgi apparatus Mitochondria May become specialized Have complex internal structures (membrane bound organelles) Pili Reproduce Respond to environment Ribosomes Rough ER Smooth ER Some are single-cellular, some are multicellular Unicellular organisms PAGE 28 <ANIMAL CELL> Color and label animal cell 29 organelles: 28 Animal Cell Nucleus Nucleolus Cell membrane Rough ER Smooth ER Mitochondria Golgi Apparatus Centriole Ribosome Nuclear Envelope Circle organelles not found in plant cells Use a ruler for lines Color and label: Nucleus Nucleolus 28 Cell membrane Rough ER Smooth ER Mitochondria Golgi Apparatus Ribosome Nuclear Envelope Cell wall Central vacuole Chloroplast Circle organelles not found in animal cells Use a ruler for lines PAGE 29 <PLANT CELL> 29 Plant Cell PAGE 30 <PROKARYOTIC CELL> Draw, 30 Prokaryotic Cell color and label: cell wall cell membrane pili flagella DNA (nucleoid region) cytosol ribosomes Use a ruler for lines PAGE 31 <CELL STRUCTURES AND FUNCTIONS> 1. 2. 3. 4. 5. 6. 7. 8. 9. Match the Cell structures 10. with their functions and copy 11. into notebook 12. cell membrane 13. cell wall 14. centrioles 15. chloroplast 16. chromatin 17. cytoskeleton 18. cytosol 19. Golgi apparatus 20. lysosome mitochondria nuclear envelope nuclear pores nucleolus nucleus organelles ribosome rough ER smooth ER vacuole vesicles Functions (match with correct structure) • Control center of eukaryotic cell • Term used to describe cell structures • Site of detoxification & manufacture of lipids • “Cell Gel” • Converts energy stored in glucose to ATP • Play a role in cell division of animal cells • Maintains homeostasis in cell • Provides shape and structure to cell; more extensive in animal cells • Captures energy from the sun to produce glucose; site of photosynthesis • “transport bubbles”; used to move biomolecules, etc. • Structure that produces proteins in a cell • Cell postmaster; packages & ships biomolecules • Uses enzymes to disinfect, break down, and recycle • Outermost boundary of plant, fungal, & bacterial cells • Openings in membrane surrounding nucleus that allows for RNA to pass through PAGE 31 <CELL STRUCTURES AND FUNCTIONS> 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. cell membrane- Maintains homeostasis in cell cell wall-Outermost boundary of plant, fungal, & bacterial cells Centrioles- Play a role in cell division of animal cells Chloroplast- Captures energy from the sun to produce glucose; site of photosynthesis Chromatin- DNA wrapped protein; genetic code Cytoskeleton- Provides shape and structure to cell; more extensive in animal cells Cytosol- “Cell Gel” Golgi apparatus- Cell postmaster; packages & ships biomolecules Lysosome- Uses enzymes to disinfect, break down, and recycle Mitochondria- Converts energy stored in glucose to ATP nuclear envelope- keeps nucleus separate from remainder of cell nuclear pores-Openings in membrane surrounding nucleus that allows for RNA to pass through Nucleolus- produces ribsosomes Nucleus-Control center of eukaryotic cell Organelles-Term used to describe cell structures Ribosome-Structure that produces proteins in a cell rough ER- modifies and transports proteins; covered with ribosomes smooth ER- Site of detoxification & manufacture of lipids Vacuole- stores water and ions Vesicles- “transport bubbles”; used to move biomolecules, etc. PAGE 32 <VIRUSES> RNA capsid DNA capsid RNA capsid proteins tail sheath tail fiber surface proteins Define in own words Virus: Capsid: Retrovirus: Lytic: Lysogenic: envelope PAGE 32 <VIRUSES> RNA capsid DNA capsid RNA capsid proteins tail sheath tail fiber surface proteins envelope Define in own words Virus: non-living particle made up of protein coat and genetic material; cause illnesses Capsid: protein coat Retrovirus: virus with RNA as genetic material Lytic: Active infection where viruses replicate and burst cells Lysogenic: Inactive infection where viral DNA (genes) is replicated along with host cell DNA; no symptoms PAGE 33 <VIRUSES VS CELLS VENN DIAGRAM> PAGE 33 <VIRUSES VS CELLS VENN DIAGRAM> CELLS VIRUSES •1000 Xs smaller •Carries out cellular functions •Cell Membrane •Considered non-living •Cytoplasm •Does not carry out cellular functions •Evolve •Genetic material (DNA/RNA) •Grow and develop •Larger •Make up living things •Made up of genetic material surrounded by protein coat (capsid) •Microscopic •Obtain and Use Energy •Reproduces independently •Require host cell to reproduce •Respond to environment •Some contain nucleus and organelles •(hint- 3 in common) CELLS -Carries out cellular functions -Cell Membrane -Cytoplasm -Grow and develop -Larger -Make up living things -Obtain and Use Energy -Reproduces independently -Respond to environment -Some contain nucleus and organelles BOTH -Evolve -Genetic material (DNA/RNA) -Microscopic VIRUSES -1000 Xs smaller -Considered nonliving -Does not carry out cellular functions -Made up of genetic material surrounded by protein coat (capsid) -Require host cell to reproduce PAGE 34<VIRUS REPRODUCTION> -TAPE IN LYTIC VS LYSOGENIC FOLDABLE PAGE 34<VIRUS REPRODUCTION> -descriptions for foldable; each # on diagram will have a bullet LYSOGENIC CYCLE LYTIC CYCLE •Assembly of new viruses •Attachment of virus •Cell division occurs as normal •Formation of proteins to form new viruses •Host cell DNA is digested •Insertion of viral DNA into host cell •Lysis of cell and release of new viruses •Rare Occasions- Prophage leaves host chromosome and enters lytic cycle •Replication of Viral DNA •Viral DNA integrated into host cell DNA 7- Lysis of cell and PAGE 34<VIRUS REPRODUCTION> release of new viruses 1- Attachment of virus 6-Assembly of new viruses LYTIC CYCLE Active, Symptomatic 5- Formation of proteins to form new viruses 2- Insertion of viral DNA into host cell 5- Rare OccasionsProphage leaves host chromosome and enters lytic cycle LYSOGENIC CYCLE Inactive, asymptomatic 4- Cell division occurs as normal 4- Replication of Viral DNA 3- Host cell DNA is digested 3- Viral DNA integrated into host cell DNA PAGE 35 <CELL MEMBRANE> Define: Phospholipid bilayerSelective Permeability (Semi-Permeable)HomeostasisEquilibrium- PAGE 35 <CELL MEMBRANE> Cholesterol Phospholipid bilayer- 2 layers of phospholipids where hydrophic tails are on inside and hydrophilic heads are on outside Selective Permeability (Semi-Permeable)- Only allows some substances to enter and exit the cell Homeostasis- Maintaining stable internal environment Equilibrium- Concentrations are equal everywhere PAGE 36 <TYPES OF MEMBRANE TRANSPORT> -O2, CO2 -H2O (osmosis) protein Cell membrane(phospholipid bilayer) -Sugars -High to low concentration (with gradient) (energy) protein -Low to high concentration (against gradient) PAGE 37 <OSMOSIS> BEFORE AFTER Shrink, Expand, or Stays same? Hypertonic, Hypotonic, or Isotonic? CELL CHANGE TYPE OF SOLUTION OUTSIDE CELL PAGE 37 <OSMOSIS> BEFORE AFTER Shrink, Expand, or Stays same? Hypertonic, Hypotonic, or Isotonic? CELL CHANGE TYPE OF SOLUTION OUTSIDE CELL Expand Hypotonic Stays same Isotonic Shrink Hypertonic PAGE 38-39 <MEMBRANE TRANSPORT CONCEPT MAP> Active transport Against Diffusion Endocytosis Equilibrium Exocytosis Facilitated diffusion High (2 times) Homeostasis Hypertonic Hypotonic Isotonic Low (2 times) Osmosis Passive transport Phagocytosis Pinocytosis Protein pumps Selectively (Semi-) Shrink (Shrivel) Stay same Swell (Expand) With PAGE 38-39 <MEMBRANE TRANSPORT CONCEPT MAP> PAGE 40 <CHEMICAL ENERGY> DRAW AND COLOR PAGE 41 <OBTAINING ENERGY> Autotroph Definition in own words 2 drawings/examples Heterotroph Definition in own words 2 drawings/examples PAGE 42 <PHOTOSYNTHESIS> Location: Reactants: Products: Organisms: _______ captured 43 <CELL RESPIRATION > # ATP produced Glycolysis: Kreb Cycle: ETC: _______ _______ _______ _______ released _______ Equation: Equation: Location: Reactants: Products: Organisms: PAGE 42 <PHOTOSYNTHESIS> Location: chloroplast Reactants: 6CO2 + 6H2O +energy Products: C6 H12 O6 + 6O2 Organisms: Autotrophs Sunlight energy 43 <CELL RESPIRATION > # ATP produced CO2 Glycolysis: 2 Krebs Cycle: 2 ETC: 32 TOTAL=36 ATP H2O C6 H12 O6 ATP for work O2 Location: Mitochondria Reactants: C6 H12 O6 + 6O2 Products: 6CO2 + 6H2O + energy Organisms: Autotroph & heterotroph Equation: 6CO2 + 6H2O +energy → C6 H12 O6 + 6O2 Equation: C6 H12 O6 + 6O2 →6CO2 + 6H2O + energy PAGE 42 <PHOTOSYNTHESIS> Location: chloroplast Reactants: 6CO2 + 6H2O +energy Products: C6 H12 O6 + 6O2 Organisms: Autotrophs Sunlight energy 43 <CELL RESPIRATION > # ATP produced CO2 Glycolysis: 2 Krebs Cycle: 2 ETC: 32 TOTAL=36 ATP H2O thylakoid matrix cristae Outer membrane grana stroma C6 H12 O6 ATP for work O2 Location: Mitochondria Reactants: C6 H12 O6 + 6O2 Products: 6CO2 + 6H2O + energy Organisms: Autotroph & heterotroph Equation: 6CO2 + 6H2O +energy → C6 H12 O6 + 6O2 Equation: C6 H12 O6 + 6O2 →6CO2 + 6H2O + energy PAGE 44 <CHROMOSOMES> draw and color CHROMOSOME chromatid chromatid Centromere PAGE 45 <CELL CYCLE> draw and color PAGE 46-47 <MITOSIS> INTERPHASE (G1, S, G2) PROPHASE CYTOKINESIS METAPHASE TELOPHASE ANAPHASE PAGE 47 <MITOSIS> INTERPHASE (G1, S, G2) PROPHASE CYTOKINESIS METAPHASE TELOPHASE ANAPHASE PAGE 48 <DNA> Color code and fill in blanks DNA stands for: ___________________________________ Monomers are called: ______________________________ Each monomer contains: 1234 different Nitrogen bases: __________________________ ________________________________________________ ______ bonds with ______ and ______ bonds with ______ PAGE 48 <DNA> Color code and fill in blanks DNA stands for: deoxyribonucleic acid Monomers are called: nucleotides Each monomer contains: 1-sugar (deoxyribose) 2- phosphate 3-nitrogen base 4 different Nitrogen bases: adenine, thymine, guanine, cytosine A bonds with T and C bonds with G PAGE 49 <3 Types of RNA> ______ __ RNA __ RNA __ RNA ______ RNA stands for: ___________________________________ Monomers are called: ______________________________ Each monomer contains: 1234 different Nitrogen bases: __________________________ ________________________________________________ ______ bonds with ______ and ______ bonds with ______ PAGE 49 <3 Types of RNA> codon ______ m __ RNA t RNA __ r RNA __ anticodon ______ RNA stands for: ribonucleic acid Monomers are called: nucleotides Each monomer contains: 1-sugar (ribose) 2- phosphate 3-nitrogen base 4 different Nitrogen bases: adenine, uracil, guanine, cytosine A bonds with U and C bonds with G PAGE 50 <Protein Synthesis> Label the following structures: •Cell Membrane •amino acid •nucleus •polypeptide chain (protein) •nuclear envelope •codon •nuclear pore •anticodon •tRNA •ribosome •mRNA PAGE 50 <Protein Synthesis> polypeptide chain (protein)