CLASSIFICATION OF LIFE AND KINGDOM MONERA Bacteria How do scientists classify living organisms? CLASSIFICATION OF LIFE & KINGDOM MONERA Objectives: SWBAT classify living organisms. SWBAT describe the characteristics of organisms in Kingdom Monera. SWBAT define a prokaryotic cell and describe its anatomy. SWBAT describe the major bacteria cell shapes. SWBAT describe why bacteria can be beneficial, providing examples. SWBAT summarize why bacteria can good and how we can inhibit the growth of bad bacteria. SWBAT describe the lab techniques used to observe bacteria. CLASSIFICATION OF LIFE Binomial Nomenclature Linnaeus’s method of naming organisms, called binomial nomenclature, gives each species a scientific name with two parts. The first part is the genus name, and the second part is the specific epithet, or specific name, that identifies the species. CLASSIFICATION OF LIFE Biologists use scientific names for species because common names vary in their use. Ursus americanus American black bear CLASSIFICATION OF LIFE When writing a scientific name, scientists use these rules: The first letter of the genus name always is capitalized, but the rest of the genus name and all letters of the specific epithet are lowercase. If a scientific name is written in a printed book or magazine, it should be italicized. When a scientific name is written by hand, both parts of the name should be underlined. After the scientific name has been written completely, the genus name will be abbreviated to the first letter in later appearances (e.g., C. cardinalis). CLASSIFICATION OF LIFE Taxonomic Categories The taxonomic categories used by scientists are part of a nestedhierarchal system. Each category is contained within another, and they are arranged from broadest to most specific. CLASSIFICATION OF LIFE Species and Genus A named group of organisms is called a taxa. A genus (plural, genera) is a group of species that are closely related and share a common ancestor. CLASSIFICATION OF LIFE Family A family is the next higher taxon, consisting of similar, related genera. CLASSIFICATION OF LIFE Higher Taxa An order contains related families. A class contains related orders. A phylum or division contains related classes. The taxon of related phyla or divisions is a kingdom. The domain is the broadest of all the taxa and contains one or more kingdoms. CLASSIFICATION OF LIFE Phylogenetic Reconstruction Cladistics reconstructs phylogenies based on shared characters. Scientists consider two main types of characters when doing cladistic analysis. An ancestral character is found within the entire line of descent of a group of organisms. Derived characters are present in members of one group of the line but not in the common ancestor. CLASSIFICATION OF LIFE Cladograms The greater the number of derived characters shared by groups, the more recently the groups share a common ancestor. FIVE KINGDOMS OF LIFE Kingdom Animalia Kingdom Plantae Kingdom Fungi Kingdom Protista Kingdom Monera CHARACTERISTICS OF KINGDOM MONERA Prokaryotic Cells: No nucleus or other double membrane bound organelles. Prokaryotic Cell Parts: Cytoplasm: jelly-like fluid that other organelles are contained in DNA: a nucleic acid that contains genetic information to control the cell and make proteins. Ribosomes: organelle used to make proteins Cell Membrane: semi-permeable membrane that controls what enters and exits the cell. 1. CHARACTERISTICS OF KINGDOM MONERA 2. Cell wall present CHARACTERISTICS OF KINGDOM MONERA 3. Asexual Reproduction: one parent cell divides into two identical cells. Most bacteria reproduce through binary fission. Conjugation: DNA recombination. Not actually reproduction but does create diversity CHARACTERISTICS OF KINGDOM MONERA Binary Fission: DNA doubles Cell Grows Cell splits into two identical cells CHARACTERISTICS OF KINGDOM MONERA Conjugation: the transfer of genetic material between bacterial cells. CHARACTERISTICS OF KINGDOM MONERA Producers and Consumers Producers (Autotrophs): cyanobacteria 4. Consumers (Heterotrophs) CHARACTERISTICS OF KINGDOM MONERA Producers (Autotrophs): contain the pigment chlorophyll and are capable of photosynthesis. They make their own sugars using Carbon Dioxide from the air and water from their environment. Oxygen gas is released as a waste product during this chemical reaction. Chemosynthesizers: some bacteria who cannot access the sun (like at hydrothermal vents in the ocean) use chemicals instead of sunlight to produce their own energy. Cyanobacteria Specimen: Anabaena spp. Authority: Bory Collected by: Phycology Lab Staff Identified by: Shannon Kresge Date Collected: January 26th 2009 Location: Science D Culture Room Habitat: Freshwater Condition: Vegetative with Heterocysts = 20μm Specimen: Anabaena spp. Authority: Bory Collected by: Frank Shaughnessy Identified by: Shannon Kresge Date Collected: April 7th 2009 Location: Science D Culture Room Habitat: Freshwater Condition: Vegetative with Heterocysts = 20μm Two different species of Anabaena Specimen: Oscillatoria spp. Authority: Vaucher ex Gomont Collected by: Phycology Lab Staff Identified by: Shannon Kresge Date Collected: January 26th, 2009 Location: Science D Culture Room Habitat: Freshwater, Filamentous Condition: Vegetative Cyanobacteria = 5.5μm CYANOBACTERIA Specimen: Spirulina Authority: Turpin ex Gomont Collected by: Emily Greenspan Identified by: Emily Greenspan Date Collected: April 29th 2008 Location: Science D Culture Room Habitat: Freshwater, Filamentous Condition: Vegetative = 2.8μm CHARACTERISTICS OF KINGDOM MONERA Consumers (Heterotrophs): can not make their own food. They must consume other bacteria. Decomposers and parasites Myxococcus xanthus is a gram-negative rod-shaped species of bacteria. It exists as a predatory, saprophytic singlespecies biofilm called a swarm. Consumes other bacteria. CHARACTERISTICS OF KINGDOM MONERA Many Monerans have symbiotic relationships. This example is cyanobacteria that have a symbiotic relationship with a sea slug. Nitrogen-fixing bacteria help plants Bacteria in human gut Bacteria on skin 5. BACTERIAL CELL SHAPES BACTERIAL CELL SHAPES: COCCI (ROUND) BACTERIAL CELL SHAPES: BACILLI (ROD) BACTERIAL SPORES What is a spore? A spore is a resting stage. A spore has a thickened capsule and contains some cytoplasm and DNA. Can remain dormant until conditions are favorable. BENEFICIAL BACTERIA OF KINGDOM MONERA 1. Decomposers: help recycle carbon and important nutrients. 2. Nitrogen-fixing Bacteria: they change nitrogen to a form plants can use. Consumers obtain nitrogen by eating plants. Food Production: bacteria are used to make yogurt and many cheeses. 4. Symbiotic Relationships: bacteria in our gut help break down foods and produce important vitamins we need. 3. 5. Medications: some bacteria are used to make important lifesaving medication such as insulin. NITROGEN CYCLE N2 in atmosphere Assimilation NO3– Nitrogen-fixing bacteria Decomposers Ammonification NH3 Nitrogen-fixing soil bacteria Nitrification NH4+ NO2– Nitrifying bacteria Denitrifying bacteria Nitrifying bacteria CARBON CYCLE CO2 in atmosphere Photosynthesis Photosynthesis Cellular respiration Burning of fossil fuels Phytoand wood plankton Higher-level consumers Primary consumers Carbon compounds in water Detritus Decomposition HARMFUL BACTERIA OF KINGDOM MONERA 1. Pathogens: bacteria that produce disease. Strep throat, pneumonia, tetanus, Lyme disease and whooping cough are caused by pathogens. Toxin-Producing Bacteria: Toxins are poisons that can make humans and other animals ill. 3. Parasites: some bacteria are parasitic and may harm the host. 2. CONTROL OF HARMFUL BACTERIA 1. Sterilization: Since bacteria species live in narrow ranges of temperature, limiting the temperature can slow their growth or even kill them Freezing: will slow growth but not kill bacteria Pasteurization: heating to 50 degrees Celsius for 30 minutes will kill most bacteria. Boiling: heating to 100 degrees Celsius for 10 minutes will kill most bacteria but not spores. Autoclaving (Pressure Cooking): heating to 121 degrees Celsius under pressure for 20 minutes will kill most bacteria and their spores. CONTROL OF HARMFUL BACTERIA 2. Dehydration: will slow the growth or kill bacteria. Doesn’t kill spores. CONTROL OF HARMFUL BACTERIA 3. pH CHanges: will slow the growth or kill bacteria. Doesn’t kill spores. Pickling: drops the pH so bacterial growth slows Fermenting: naturally drops the pH (sour cream, yogurt) Salting/Sugaring: Creates a strong osmotic gradient, pulling water out of the cells, causing cell death. This method is used where refrigeration is not possible) CONTROL OF HARMFUL BACTERIA 3. Chemical Application: will slow growth or kill bacteria. Disinfectants: Lysol, bleach, soap and other chemicals effectively kill unwanted bacteria on surfaces, clothes, and your hands. Antiseptics: Disinfectants that are used to treat people to prevent bacterial growth. Ex. Rubbing alcohol, hydrogen peroxide, and Neosporin Antibiotics: medication synthesized by one organism to kill another organism. Ex. Medication to kill streptococcus, the bacteria that causes strep throat. CONTROL OF HARMFUL BACTERIA ANTIBIOTIC TREATMENT FOR BACTERIA Antibiotics: (Against-Life) inside of the body Kill bacteria •Grow bacteria on a nutrient agar plate •Place antibiotic discs on plate •Measure area where bacteria are killed (did not grow) This is the Zone of Inhibition •The Zone of Inhibition which is the largest shows which antibiotic will be the most effective against the infection ANTIBIOTIC RESISTANCE: WHY DO ANTIBIOTICS STOP WORKING? Resistant bacteria can take longer to kill – if not all killed with anti-biotic they survive and reproduce a whole population of resistant bacteria LAB TECHNIQUES USED TO OBSERVE BACTERIA 1. Bacteria Collection and Growth. (this will be our wild plates) 2. Make a streak plate using sterile technique. Four volunteers will help me do this. (this will be our pure culture plates) Heat Fix. This step allows to put individual cells on a slide so we can attempt to view individuals cells from the colony. 4. Gram Stain: This step allows scientists to see cell shape, cell grouping, presence of spores and cell wall structure. 3. 5. Oil Immersion: Oil is used with the 100x lens of the microscope so we can see bacteria better. LAB TECHNIQUES USED TO OBSERVE BACTERIA STERILE TECHNIQUE: refers to a series of procedures that keep unwanted fungi and bacteria out of your plates and keeps the organism that you are working with in your plate. 1. Unless sterilized, everything is considered contaminated. 2. All surfaces must be washed with antiseptic before and after working with bacteria. 3. All equipment used with bacteria must be sterilized before and after use. 4. Keep all bacterial cultures closed and covered. 5. No food or drink may be consumed in a room where bacteria are being worked with. 6. Personal items must not be mixed with bacteriological lab equipment or be put onto lab surfaces unless the surfaces have been cleaned with antiseptic. 7. Hands must always be washed with germicidal soap after working with bacteria. LAB TECHNIQUES USED TO OBSERVE BACTERIA Making a Streak Plate Using Sterile Technique 1. Flame the wire loop. 2. After it is cool, touch the wire loop to one bacterial source. 3. Open the plate with your non-dominant hand and hold the lid covering the dish. DO NOT SET THE LID DOWN! 4. Streak a small area of the plate. 5. Flame the wire loop. 6. After it is cool, pull the wire loop through the streaked area and streak another area of the plate. 7. Repeat Steps 5 and 6 one more time until the surface of the agar is fully streaked. 8. Close the plate. 9. Flame the wire loop. GRAM STAINING OF EUBACTERIA Allows bacteria to be seen with a microscope and classified Gram negative = pink Gram positive = purple LAB TECHNIQUES USED TO OBSERVE BACTERIA FOCUSING USING THE OIL IMMERSION LENS WASH YOUR HANDS AFTER USING THE IMMERSION OIL. 1. Place the bacterial slide on the stage and follow the focusing procedure for the 10X objective. 2. Scan the slide for a “thin area,” where individual bacterial cells can be seen. 3. Center the thin area in the field of view and focus. 4. Move the 10X and 40X lens out of the way of the slide and place a drop of immersion oil on the slide where the field of view is. 5. Place the 100X lens in to place, and looking from the side, check to make sure there is a column of oil between the 100X lens and the slide. 6. Adjust the focus and the light so that you can see the bacterial cells clearly. 7. When you are through using the oil immersion lens, use clean lens paper to clean the eyepiece first, and then the oil immersion lens. 8. Leave the immersion oil on the slide if the slide will be needed again.