SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. Chapter 14: CAUSES OF EVOLUTIONARY CHANGE - Part II - “The only unchangeable and fixed truth we can relay on is the continued change on planet Earth…” To cope with the ever happening changes and continued transformation of the face of the Earth, all forms of life have to follow these changes by a process called adaptation Today we know, that two major processes account for most of the evolutionary changes observed in living organisms 1. Factors that contribute to genetic change in individual biological organisms due to our modern understanding of molecular genetics and heredity we know that evolutionary change of phenotypic characteristics and development of new species requires change or new assortment of the genetic material the sequence of nucleotides on the DNA molecule has to be changed in order bring out a new gene product, i.e. a protein or enzyme, and (in a long term) to lead to a new phenotype of a species change or new assortment of genetic material (= DNA) within an individual living organism is achieved by two major processes: II.. M Muuttaattiioonn different forms of mutations can occur within the DNA molecule each with different consequences for the targeted cell and the affected organisms a. Point mutation one nucleotide within the DNA molecule is changed (replaced or lost); depending which nucleotide is affected or replaced the resulting protein function can be either left unharmed or is changed point mutations within the DNA can be caused by different means, most of all by so-called mutagens e.g. certain chemicals, such as nitrosamines, benz(a)pyrene, natural or artificial radiation (= radon, UV light, X-ray) usually most of the point mutations either remain “silent” or are discovered by the cell’s endogenous surveillance and repair system (see: Molecular Biology: DNA repair mechanisms) and immediately repaired; but some mutations which change a proteins biological function may escape these surveillance mechanisms and lead to a novel cellular characteristics 1 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. b. Deletion a short piece of DNA gets lost or becomes actively excised out of the DNA strand mutation by deletion usually has dramatic effects on the resulting protein structure and function; it can leads to proteins with sometimes completely new features DNA deletions are often caused as a consequence of the life cycle of certain viruses which insert into the cellular genome of organisms; many viruses take a piece of host-DNA with them (DNA thieves!) c. Insertion a short piece of DNA integrates into the DNA molecule it usually also leads to a massive stir-up of the flow of the genetic information within a cell many DNA insertions are caused by viruses which integrate into the genetic material of their host cells scientists suspect that several mutation events over long times are necessary to change a genome in a way that its bearer profits from an improved adaptation to its environment or from a more favorable trait (usually asexually reproducing) organisms with very short generation spans can adapt very quickly by means of mutations alone e.g. in prokaryotes, which multiply very fast, a favorable mutation can increase its frequency within the descendant bacterial population in a matter of hours or days moreover, prokaryotes have only one single allele, which means that the altered gene can show its novel effect immediately without being obscured by the compensatory effect of the second (unaffected) allele diploid eukaryotic organisms with their usually long generation times would take long periods of times and multiple DNA events (= mutations) to bring out favorable genetic variation therefore, most genetic variation in higher organisms (= animals and plants) comes from sexual recombination during the so-called crossing over event during the formation of egg and sperm cells (see meiosis!) IIII.. G Geenneettiicc R Reeccoom mbbiinnaattiioonn genetic recombinations are changes of the sequence of chromosomal DNA due to rearrangement of larger stretches of DNA (= chromosomal fragments including thousands of genes) in cells of higher organisms, this can happen by two major cellular processes 1. by crossing over during meiotic cell division in specialized cells, so-called germ cells located in the gonads or reproductive structures 2 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. 2. by transposons (= movable genetic elements) with the help of special enzymes these so-called translocations (= movement of larger chromosomal fragments) are in most cases harmful to the organisms, but in rare cases they may bring out beneficial new characteristics in the affected individual summarized, mutations and rearrangement of DNA by recombination and/or transposons lead to a tremendous increase in genetic variation and diversity amongst the individuals of a population the huge diversity of the human population is explained by the large genomic material (approx. 40,000 genes and 3 billion base pairs!) and its vast gene pool (approx. 5 billion individuals!) which both contribute to the enormous genetic variety of the species Homo sapiens some of the variations are phenotypic and anatomically visible, e.g. skin color, eye color, hair color, ear lobes, freckles, height, etc., but most of the “hidden diversity” between individuals of a population, such as the ABO blood group, Rhesus factor, blood cell number, etc., can only be detected and studied with the help of sensitive biochemical techniques, such as electrophoresis, singlenucleotide polymorphism, antibodies, PCR, DNA sequencing, etc. gene mutations and recombinations result in new alleles, and are the ultimate source of variation within populations M Muuttaattiioonn R Raattee & &M Miiccrroo--E Evvoolluuttiioonn “ … mutations happen all the time…this is why evolution is an unstoppable process on planet Earth!” due to DNA replication and DNA repair mechanisms, mutation rates of individual genes are low, but since each organism has many genes, and a population has many individuals, new mutations arise in populations all the time by studying the mitochondrial DNA of many different species, scientists have estimated that it takes approximately 500,000 years for 1% of DNA to be changed this estimated mutation rate is currently questioned and future studies will have to show whether mutation rates are constant and the same for different nucleic acids, e.g. mtDNA, genomic DNA or rRNA, on our planet mutations are relatively common and the ultimate source of new alleles; high levels of molecular variation are common in natural populations, although many mutations (usually recessive) are hidden. 3 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. the mutation rate varies greatly among species and even among genes of an individual; large scale effects of mutation result only when mutations, e.g. caused by errors in DNA replication, chemicals, or radiation, are combined with other factors, e.g. viruses, that reshuffle the gene pool A change in the frequency of alleles in the gene pool of a species over time is evolution in its smallest scale or also referred to as micro-evolution N NA ATTU UR RA ALL S SE ELLE EC CTTIIO ON N “… natural selection is the only driving force by which adaptation of biological organisms to its environment occurs … and ultimately new biological organisms arise over time!” “Natural selection is the creative force of evolution, not just the executioner of the unfit…” (S.J. Gould) genetic variation due to mutation and/or recombination, is one of the pre-conditions of the process of natural selection, which, however, acts on individuals, not their genes the natural forces and principles select from the offered arsenal of gene and allele variety within a population natural selection acts on the phenotypic variations of individuals of a population by different means, e.g.: 1. 2. 3. 4. 5. Competition for resources and mates Vulnerability to diseases, pathogens, etc. Resistance to repellants, poisons or environmental toxins Resistance to periods of malnutrition Camouflage protection or other successful escape strategies from predators some individuals of a population always turn out to be better adapted to their environment than the other members usually the better adapted individuals have a higher chance to survive and are more likely to reproduce as a consequence, they more likely pass on their (favorable) adaptations to the next generation; the alleles of the favorable trait will be in greater frequency among the individuals of the next generation, than those traits of the less "fit" members of the population 4 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. natural selection filters out certain genotypes from the “gene pool” of a population by targeting the whole organisms (= phenotypes) of its members not all variations within a population are heritable and environmentally induced phenotypic changes are not passed on to the off-spring (see Lamarckism!) only genetic components of variations laid down in the DNA of sperm or egg cells is passed over and can lead to evolution as a result of selection members of a population usually have an unequal chance of surviving and reproducing in other words, natural selection is differential survival and reproduction of individuals carrying alternative, inherited traits; it involves differences in the relative contributions of various genotypes to the next generation. variation in the competence of genotypes can come from many causes/sources: 1. Selective agents environmental factors, including competitors, predators, parasites and environmental conditions of the physical environment, such as repellants, toxins, etc. 2. Fertility/fecundity differences among genotypes 3. Differences in frequency of reproduction among genotypes 4. Differences in viability/longetivity among genotypes physical expression of certain “disease-related genes”, e.g. oncogenes, before reaching the reproductive age lowers survival chances and the reproductive fitness differential increases in genotypes(= alleles) within a population are ultimately due to: 1. Differential survival & 2. Differential reproduction a consequence of natural selection is the change in frequencies of diploid genotypes (= alleles) within a population ““bbiioollooggiiccaall ffiittnneessss”” is a measure of an individuals ability to survive, reproduce and to make a greater contribution to the gene pool of the next generation a biological organism that does not reproduce has a biological fitness of “zero” “Biological fitness in a Darwinian sense refers to the propensity of individuals of a population to survive and to successfully reproduce in their environments…” 5 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. usually a population includes two or more contrasting forms (= morphs) of a phenotypic characteristic or trait (e.g. blue, green, brown eye color); we say a population is polymorphic regarding this characteristic e.g. pattern polymorphism of the California King snake, of lady beetles or the ABO blood groups in humans graphical presentation of the frequency of phenotypic variants of an ideal polymorphic population resembles a bell-shaped curve (= “Poisson distribution”) this bell-shaped distribution of the phenotypic variants is the result of polygenic inheritance patterns the idea of natural selection was developed Darwin as one of his explanations for the observed evolutionary changes of species his idea was strongly influenced by an assay of the British economist T. Malthus on human population dynamics since natural resources on Earth are limited, Darwin deduced that the production of more individuals than the environment can support causes struggle for existence among the individuals of a population he concluded further that as a consequence only individuals with inherited characteristics that adapt them best to their environment are most likely to survive the driving force of natural selection is therefore the uunneeqquuaall ssuucccceessss iinn rreepprroodduuccttiioonn among members of a population natural selection leads to gradual change in the characteristics of a population of organisms which gets the favored characteristics of its most reproductive members Darwin also reasoned that it is in most cases the physical environment (e.g. climate, seasonal changes, predators, etc.) which screens for the most favored traits within a certain species natural selection tends to reduce the phenotypic variability in a population over time; but the individuals of a population do not become genetically uniform due to the existence of so-called recessive alleles the recessive allele remains hidden in the gene pool of a population and becomes only subject to natural selection in the case of phenotypical expression in homozygous individuals (= individuals which bear both recessive alleles) not all genetic variations are subject to natural selection, they are called neutral genetic variations; some genetic traits, e.g. human finger print, provide no selective advantage for the individual carrier evolutionary biologists are controversial about how much of the genetic variation is neutral and about how many alleles confer no selective advantage to its carriers some argue that certain genetic variations only appear to be neutral and influence the reproductive success of its carrier in subtle, for us humans (currently) not visible or measurable ways 6 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. 3 different ways (= modes) are known by which natural selection can alter the phenotypic variation of an ideal, polymorph population 1. Stabilizing selection the natural sseelleeccttiioonn pprreessssuurree favors the evolution of intermediate variants stabilizing selection is mostly observed in stable environments individuals of the population have an intermediate phenotype which is the best adapted one 2. Directional selection the sseelleeccttiioonn pprreessssuurree acts against individuals at one of the phenotypic extremes (= left or right of the bell-shaped curve) the frequency of rare phenotypic variants increases, while the originally dominating phenotype disappears from the population due to on-going “selective pressure”, the bell-shaped population curve is shifted to the right or left, respectively - e.g. the formation of DDT-resistant insects over time; only those insects resistant to DDT survived and reproduced, leading over time to populations largely resistant to DDT - e.g. resistance of many bacterial species to antibiotics is another example of - directional selection; today, increasing numbers of bacterial strains are reported to show some degree of resistance against the most commonly used antibiotics, such as penicillin or tetracycline - this unwanted development necessitates the development and more prudent use of new generations of antibiotic medicines Stabilizing selection in stable environments favoring of intermediate morph S Seelleeccttiioonn P Prreessssuurree 7 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. Directional selection favoring of phenotypic extremes S Seelleeccttiioonn P Prreessssuurree 3. Diversifying selection the sseelleeccttiioonn pprreessssuurree favors the reproduction/survival of individuals at both phenotypic extremes individuals with intermediate phenotype feel most selection pressure and decline in the population it causes a discontinuity of the variations, causing two or more morphs or distinct phenotypes Paappiilloo ddaarrddaannuuss) produces two distinct - e.g. the African swallowtail butterfly (P morphs, both of which resemble brightly colored but distasteful butterflies of other species - although obviously eatable, both morphs gains protection from predation more than 100 examples are known, which outcomes can be clearly attributed to the principle of natural selection - e.g. the European land snail C Ceeppaaeeaa nneem moorraalliiss changes its shell color dependent on the conditions of its habitat - e.g. the peppered moth B Biissttoonn bbeettuullaarriiaa appears in two color variety in Great Britain; a bright and a dark-colored form before the “Industrial Revolution” the light-colored forms dominated in the Biston population and dark-peppered moths were very rare; the light-colored moths were better camouflaged to the bright background of the tree bark; 8 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. after the onset of industrialization in the 1900s and its resulting air-pollution due to massive coal-burning, the dark-colored moth became more abundant within the Biston population they turned out to be better camouflaged to tree bark which was blacked by industrial soot by the early 1900s the Biston population in British industrial areas consisted almost entirely of black moth; the light-colored forms of Biston became the easy prey of birds on the dark-colored tree bark; they produced less off-spring and declined in numbers within the Biston population Diversifying selection favoring of two phenotypic extremes S Seelleeccttiioonn P Prreessssuurree 9 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. Factors that contribute to the rate of genetic change in a population scientists unraveled many factors and events that lead to an increased rate of genetic change and a change in allelic distribution in a population 1. Genetic drift evolutionary change of biological organisms can arise as a consequence of the random change of the relative frequencies of alleles in a population over a number of generations the phenomenon of by-chance-alone variation of the frequency of alleles observed in small gene pools is also known as ggeenneettiicc ddrriifftt 2. Limited fertilization if parents of diploid organisms produce only a limited number of offspring, some of their alleles may not be passed on to their offspring - most genes in diploid organisms occur in two versions (= alleles) which are located on two different chromosomes (= diploid chromosomal set) - since the two alleles are random-distributed during meiosis, sperm and egg cells receive only one random set of (haploid) chromosomes; - therefore in limited fertilization of one individual some of its alleles may not be passed over anymore and not be represented within its population anymore due to this random process of distribution of the parental alleles, the relative frequencies of certain alleles in a population changes or drift over time in a process due to only a random change of the frequencies of traits (=alleles) but not the traits itself, genetic drift does not enable the individual species to evolve a better adaptation to its environment! genetic drift rather leads to a better adaptation of the population due to gradual changes of its genetic make-up 3. Migration the frequency of alleles in a certain region may change due to the migration of interbreeding organisms with different traits from a different area into that region migration usually leads to a rapid micro-evolution, means a rapid arise of new allele frequencies within a population 4. Small group phenomenon a special form of rapid change of allelic frequencies in a population is known to scientists as “small group phenomenon” 10 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. a small group of surviving, separated or emigrating individuals starts a new population which new gene pool will only represent a small percent of the alleles of the original population 5. Catastrophes, Disasters & Luck other major factors which (ever since the beginning of life on Earth) powerfully influenced the speed of micro-evolution were natural catastrophes and disasters, such as meteorite impacts, earthquakes, volcano eruptions, fires, etc. under these conditions the survival of a certain, not necessarily the “best adapted”, allele combination is a mere situation of “good luck” the surviving individuals with its (limited) gene pool will eventually start a new population with changed allelic frequencies S Sppeecciiaattiioonn “Evolution of one species into two species requires separation events” to total number of different forms of life on planet Earth is not fixed; it is an agreed on conception amongst biologists that the total number of species in the world changed over long periods of time and that different Earth periods were populated by different species since the total number of species does not remain the same on Earth, the early biologists of the 19th century suspected some common mechanism that is responsible for the appearance of new species over time in the 1860s, the English scientist Charles Darwin introduced the term speciation to explain the multiplication of species on Earth Definition: Speciation Speciation is the process by which several new species of biological organisms are produced from a single population of parental species speciation is the process that is responsible for the evolution of new species; i.e. new groups of successfully interbreeding members of a population that are reproductively isolated from members of an original “parent population”; different species are biochemical and geographically separated from each other due to existence of a reproductive barrier during speciation members of a “parent population” acquire and propagate new isolating traits while isolated from its parent isolation and ceasing to exchange genetic material with the “left-behind” population speciation is completed after establishment of a full-fledged reproductive barrier between members of the different and separated populations 11 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. today we differentiate between 4 different forms of speciation to explain the evolution of new species each satisfying different observations in nature: 1. Sympatric or ecological speciation - idea already introduced by Charles Darwin in the 1850s because of his observations of different finch species on the Galapagos islands - it states that different species arise from a founder population because of different preferences for different ecological niches in an area - no geographical separation is necessary - it is a rare form of speciation, which is rarely observed in mammals, birds, butterflies and birds; it is frequently observed with fishes and insects 2. Allopatric or geographical speciation - the isolating process which triggers this form of speciation is of geographical nature, e.g. the separation of continents due to continental drift or the formation of new islands due to volcanic activity - it is the exclusive mode of speciation among birds and mammals - biologists discriminate between two forms of allopatric speciation: 2.1. Dichopatric (secondary) speciation - caused by the “sudden” appearance of a geographical barrier which separates a large interbreeding population into two (unequal) halves (see Graphic below) - e.g. formation of the Bering strait between Siberia and Alaska which separated the large land mammals of the northern hemisphere during the Pleistocene - rise of new animal species in Siberia and North America 2.2. Peripatric (primary) speciation - means the establishment of (small) founder populations beyond the periphery of the present range of species due to the appearance of impassable barriers and terrain, such as valleys, rifts, freeways, artificial ports, dams (see Graphic below) - forced “evolutionary departure” of individuals of a parent population into new ecological niches - form of speciation which is very vulnerable to extinctions! 3. Instantaneous speciation - describes the sudden appearance of reproductive isolation due to various chromosomal variations, e.g. polyploidy, gene duplications, deletions - rather rare form of speciation which is frequently observed with plant hybrids, fishes, amphibians and reptiles - often leads to massive polyploidy and parthenogenesis of affected species; widely considered leading to “evolutionary dead-end forms of life” 12 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. Graphic: The two forms of allopatric speciation A. Dichopatric (secondary) speciation Land mass/ Habitat Time Time Time Individual Species C Parent population (Species A) Species B New geographical barrier Residual Interbreeding zone B. Peripatric (primary) speciation Separated “founder population” Extinct “founder population” eventually merges with parent population Parent population (Species A) Eventually becomes “New species” Graphic©E.Schmid/2004 4. Speciation by hybridization - two different polyploid hybrids of a species give rise to a non-polyploid species - rare form of speciation with only 8 cases known to biologists - occurs mostly in smaller or peripheral populations and in “fringe habitats” which have been drastically reduced in size by human activity if there is a genetic background explaining the different mechanisms of speciation (= existence of “speciation genes”), it has to be looked at in the genes responsible for the successful fertilization between a sperm and egg cell - mutations in these genes might be responsible for the successful establishment of the reproductive barrier which is crucial for the rise of a new species over time 13 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. as we heard in the previous sections, genetic change is created by random mutations, viruses, events during sexual reproduction and many factors that increase or decrease the frequencies of alleles in future generations but so far the genetics of speciation is the “genetics of isolating mechanisms” between members of a population; the key to understand the evolution of one species into (eventually many) new species over long periods of time is indeed the detailed knowledge about separation events if two usually interbreeding groups become separated, each will (unavoidably) change over time, BUT (due to the random character of the genetic change events) each in a different way at the different loci since separated groups usually don’t mix their genes or gained mutations anymore, each group will begin to accumulate different mutations moreover, since they usually stop interbreeding with each other again, they will begin to look different from each other many events are known to scientists that can cause separation of biological species 1. Geographical separation Due to Earthquakes and formation of new landscapes Due to Drifting continents (= Plate Tectonics) e.g. separation of the North American plate from the Eurasian plate created new species on both continents e.g. plate tectonics created a huge rift valley and high mountain ranges, that separated East Africa from west Africa about 8 million years ago the much drier East African climate lead to the evolution of different animal groups, which showed clear adaptations to a drier environment it obviously also triggered the early hominid evolution fossil records of early hominids, e.g. Australopithecines, could be only found in East Africa, while genus Pan (including the chimpanzees) and other apes evidently evolved in West Africa Due to Glaciation & Changes in sea levels 2. Anthropogenic (= human-caused) separation Due to building of freeways or artificial water ways, e.g. channels Due to urban development, which may lead to a separation of a valley, canyon, etc. The speed of speciation (= speciation rate) is primarily determined by ecological factors, such as nutrition, competition, temperature, water supply, light intensity, etc. - little speciation is observed on large uniform continents, e.g. Australia, Pangeae (?) 14 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. - fast and frequent speciation ( high speciation rate) is usually observed when the range of species is dissected by geographical and ecological barriers E Evvoolluuttiioonn ooff nneew w ssppeecciieess iiss aacccceelleerraatteedd bbyy m maassss eexxttiinnccttiioonn ooff ddoom miinnaattiinngg ““oolldd ssppeecciieess”” the abrupt disappearance of vast numbers of biological organisms, so-called mass extinctions, has happened several-fold on planet Earth and carefully documented by many scientists in the past decades Example: The famous Permian-Triassic (or P-T) mass extinction, which is characterized by the extinction of 50% of all shallow water marine life forms (biota), is explained by the formation of the supercontinent Pangaea; the formation of this supercontinent by tectonic movement of the Earth’s crust lead to less miles of shallow water shoreline; since habitat area determines species diversity, less habitable shorelines lead to the dramatic decrease in numbers of shallow water species during that time mass extinctions can and have been be triggered by many factors, most of all by: 1. Tectonic events Due to tectonic drift of the continental plates over long periods of time E.g. see P-T mass extinction theory 2. Extraterrestrial events due to changing solar activities connection between frequency and intensity of solar spots and the Earth’s climate? due to changes in Earth rotation and the Earth’s inclination angle due to impacting asteroids or meteorites 3. Biological activities the metabolic or habitual activities of newly evolved organisms destroy previously existing species 4. Human activities the vast and global destruction of habitats of many plant and animal species by human civilization activities, such as tropical rain forest deforestation, creation of new agricultural areas, urbanization 15 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. TThhee H Haarrddyy--W Weeiinnbbeerrgg--LLaaw w although there are usually dominant and recessive alleles present within a population, nature does not end up in the existence of only dominant phenotypes after many generations and long periods of times scientists discovered that nature rather keeps an equilibrium state of both alleles in diploid biological organisms the frequency and distribution of both (= dominant and recessive) alleles within a population can be mathematically calculated and described with the help of the socalled ‘‘H Haarrddyy--W Weeiinnbbeerrgg--llaaw w’’ (named after its two discoverers) Hardy-Weinberg-law: (1) pp222 ++ 22ppqq ++ qq222 == 11 p and q = the allele frequency within a population pp is the frequency of the ddoom miinnaanntt aalllleellee e.g. 78% of all individuals of a given population have the W ) = 0.78 dominant allele W W; that means p(W qq is the frequency of the rreecceessssiivvee aalllleellee w) = e.g. 22% of all individuals have the recessive allele w w; that means p(w 0.22 pp222//qq222 is the frequency of the homozygous ddoom miinnaanntt //rreecceessssiivvee genotype by knowing the frequency of only one of the genotypes within a given population, usually of the less frequent homozygous recessive (= ww) trait, one can calculate the frequency for the other allele combinations with the help of equation (1) the frequency of two alleles in the population of gametes of individuals of one generation is the same as it is in the gamete population of the parental generation BUT: the Hardy-Weinberg law is only valid when 5 conditions are full-filled within an (ideal) population 1. the population has to be very large 2. the population has to be isolated and no migration of individuals in or out of the population takes place 3. no mutations take place which may alter the gene pool 4. the mating among the individuals of the population is random (= random mating) 5. all individuals have equal reproductive success 16 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. the preconditions of the Hardy-Weinberg law are rarely if not full-filled at all in nature; the Hardy-Weinberg law rather describes the allelic situation within a theoretical (= ideal) population in the “real natural world” on our planet we usually see populations that differ from that picture: 1. Many populations in nature are small the population number of many endangered species today, e.g. the Siberian tiger or the Chinese Panda bears is small e.g. today only about 31,000 individuals of the Northern Elephant seals are counted, after they got almost extinct in the 1890s by hunters; in these seals only one allele was found for each examined 24 gene loci; this obvious loss of genetic variety within a small population of a species which suffered a high evolution pressure is also described as the bboottttllee--nneecckk eeffffeecctt the bottle-neck effect leaves only a limited number of “survival alleles” back in a population of a species which faced strong evolutionary pressure, such as hunting, earthquake, brush fires, ice ages, epidemical diseases, etc. the bottle-neck effect leads to a genetic drift decreased genetic variety and genetic drift also occurs after colonization of a new territory, e.g. island by a small group of individuals (e.g. Galapagos islands); this scenario is also called the so-called founder effect 2. For many populations the migration or movement of fertile individuals into or out of it is the routine e.g. the transfer of sperm or pollen of plants to other plant populations by wind, ocean streams or animals occurs this so-called gene flow also leads to a genetic drift within the population gene flow usually reduces the genetic difference between populations of the same species, while reproductive isolation increases the risk of bringing out unfavorable recessive genes or alleles today due to our sophisticated and world-bridging, modern transport systems there is more gene flow in the human population than ever before in human history 17 SAN DIEGO MESA COLLEGE SCHOOL OF NATURAL SCIENCES General Biology (BIO107); Instructor: Elmar Schmid, Ph.D. 3. Mutations and chromosomal recombinations occur regularly but infrequently during the cellular life cycle after a gene has changed by (a) mutation(s), it duplicates itself in its changed (= mutated) form if these mutant genes are present in the egg or sperm cells of an organisms they may alter some heritable characteristics if multiple mutations become manifested over long periods of time within the germ line of individuals of a certain population new species may arise alterations of the DNA sequence are caused by many factors, e.g. chemicals (= mutagens), radiation (UV light, X-ray) or certain viruses most mutations lead to unfavorable traits; the affected genes are usually not propagated into the next generation because the affected individuals die before birth or don’t survive long enough to successfully reproduce themselves some mutations are immediately repaired or remain without obvious effect on the organisms phenotype during his life-time very rare mutation events, however, at some time and under certain environmental conditions may turn out to give its carrier or its descendants (which inherited the mutation) an evolutionary advantage “… mutations are indeed the only source which lead to the formation of new genetic variation within a gene pool; mutations lead to genetic drift and are the ultimate driving force of evolutionary change on planet Earth.” 4. Usually non-random mating is the rule in most populations “Hardy-Weinberg random mating” is rarely the case and individuals of many plant or animal populations mate with their immediate neighbors even in the human population we observe similar patterns and human males and females with similar phenotypic traits tend to mate more frequently; e.g. over-average-sized, tall women tend to marry taller men non-random mating also leads to a genetic drift in real populations all five preconditions are violated to some extent 18