2023-06-16T23:36:33+03:00[Europe/Moscow] en true <p><strong>characteristics</strong> of the<strong> genus Staphylococcus?</strong></p>, <p><strong>species of Staphylococcus that are pathogenic</strong></p>, <p>most important<strong> staphylococcal pathogen? virulence factors?</strong></p>, <p><strong>Staphylococcal infections generally present?</strong></p>, <p>Staphylococcus epidermidis and Staphylococcus saprophyticus cause</p>, <p><strong>local and systemic infections caused by S. aureus</strong></p>, <p>&nbsp;<strong>toxins produced by Staphylococcus </strong>and what<strong> toxigenic disease</strong></p>, <p><strong>drugs to combat S. aureus </strong></p>, <p><strong>MRSA and VRSA?&nbsp;</strong></p>, <p><strong>characteristics </strong>used to<strong> differentiate Staphylococci from Streptococci?</strong></p>, <p><strong>characteristics of Streptococcus?</strong></p>, <p>How are members of the <strong>Streptococcus classified</strong></p>, <p>What <strong>diseases</strong> are caused by <strong>Streptococcus pyogenes group A</strong></p>, <p><strong>characteristics of S. pyogenes?</strong> </p><p></p>, <p><strong>Streptococcal virulence factors?&nbsp;</strong></p>, <p>causes <strong>scarlet fever?</strong></p>, <p>Where is <strong>Group B streptococcal disease found? </strong>How is is <strong>prevented/treated?&nbsp;</strong></p>, <p>Who is at<strong> risk for Streptococcus pneumoniae infection? prevented?</strong> What <strong>drugs</strong> are used to<strong> treat Streptococcal infections?</strong></p>, <p><strong>major genera of Gram-negative cocci?</strong></p>, <p>•Neisseria:</p>, <p><strong>Neisseria gonorrhoeae signs/symptom? spread? Treated? </strong></p>, <p>Neisseria meningitides <strong>signs/symptom? spread? Treated? </strong></p>, <p>major <strong>endospore forming gram + rod?</strong></p>, <p><strong>gram + rod distinguished from one another?</strong>&nbsp;</p>, <p><strong>diseases</strong> are caused by each in gram + rod</p>, <p>&nbsp;Who is most at risk for <strong>anthrax?</strong></p>, <p>characteristics of <strong>C. tetani</strong></p>, <p>characteristics of <strong>&nbsp;C. perfringens,</strong></p>, <p><strong>&nbsp;</strong>characteristics of <strong>&nbsp;C. botulinum</strong></p>, <p><strong>&nbsp;</strong>characteristics of <strong>&nbsp;Clostridioides difficile. location, detected, cause, treatment</strong></p>, <p><strong>divide gram + rods non endospore into regular and irregular.</strong></p>, <p>characteristics of <strong>Listeria monocytogenes?Where</strong> found? <strong>prevent it from infecting humans?</strong></p>, <p>How many<strong> cases of diphtheria</strong> are typically seen in the U.S.?<strong> Why?</strong></p>, <p>characteristics of <strong>acid-fast bacilli?</strong> What diseases?</p>, <p><strong>causative agent of Hansen’s disease? signs, if untreated</strong></p>, <p>&nbsp;what organism is<strong> cord factor found?</strong></p>, <p>stages of <strong>tuberculosis?</strong></p>, <p>&nbsp;<strong>Mycobacterium leprae </strong>treated</p>, <p><strong>Mycobacterium tuberculosis</strong> treated</p>, <p><strong>Gram-negative pathogens </strong>have what <strong>virulence factor </strong>in common?</p>, <p>characteristics of<strong> Pseudomonas? Where</strong> is it found and <strong>who </strong>is most at risk?</p>, <p>disease caused by <strong>Bordetella pertussis?</strong> <strong>Who</strong> is most at risk? How is <strong>whooping cough prevented/treated?&nbsp;</strong></p>, <p>Characteristics, disease, found? who is at risk? treatment? </p><p><u>Pseudomonas aeruginosa</u></p>, <p>Characteristics, disease, and how infectious occur, Where <strong>Legionella</strong> found</p>, <p><strong>surface antigens</strong> on <strong>Gram-negative E. coli </strong> what diseases? <strong>STEC?</strong></p>, <p><strong>Pathogenic E. coli </strong>infections may be seen in <strong>what areas of the body?</strong></p>, <p><strong>two major types of Salmonella?</strong> <strong>difference between the two?</strong> </p>, <p><strong>risk factors </strong>for contracting Salmonella? <strong>prevented/treated</strong>?</p>, <p>How is <strong>Shigella</strong> transmitted? What <strong>disease </strong>does it cause?</p>, <p>Where <strong>Yersinia pestis </strong>found? What<strong> disease </strong>does it cause?&nbsp; <strong>bacteria transmitted</strong>? <strong> treated?</strong></p>, <p><strong>Spirochetes</strong> include what <strong>pathogenic genera</strong>?</p>, <p><strong>causative agent of Syphilis</strong>?</p>, <p>&nbsp;differences between <strong>primary, secondary and tertiary syphilis</strong>? control?</p>, <p><strong>characteristics of Leptospira? acquired? Where</strong> would you be <strong>most likely to acquire the disease?&nbsp;</strong></p>, <p><strong> characteristics of Borrelia?</strong> </p>, <p><strong>diseases </strong>caused by members of the genus <strong>Borrelia?</strong></p>, <p><strong>causative agent of Lyme disease? characteristics</strong>? <strong>controlled</strong>? <strong>spread</strong>?&nbsp;</p>, <p><strong>diseases </strong>caused by bacteria in the genus <strong>Vibrio</strong>? <strong>Where</strong> would you contract these diseases, and<strong> who is most at risk</strong> for<strong> serious complications</strong>?</p>, <p><strong>characteristics of Campylobacter</strong>?&nbsp;</p>, <p><strong>characteristics of </strong><u>Campylobacter jejuni</u></p>, <p>What <strong>disease is caused by Helicobacter pylori</strong>?&nbsp;</p>, <p>major characteristics of <strong>Rickettsia</strong>?</p>, <p><strong>disease Rickettsia prowazekii</strong>? transmitted?</p>, <p><strong>disease Rickettsia typhi?</strong> transmitted?</p>, <p><strong>disease Rickettsia rickettsia?</strong> transmitted?</p>, <p><strong>structure of viruses</strong></p>, <p><strong>type of nucleic acid</strong> is found in the<strong> genome of viruses</strong>. Do they have all the <strong>genes</strong> they need for<strong> infection</strong> and <strong>metabolism</strong>?&nbsp;</p>, <p>How is <strong>viral infection</strong> typically <strong>diagnosed</strong>?</p>, <p><strong>risk of contracting smallpox</strong>?&nbsp;</p>, <p><strong>characteristics of herpes simplex I and II</strong>? <strong>differ</strong>? <strong>treated</strong>?&nbsp;</p>, <p><strong>diseases</strong> caused by<strong> varicella-zoster virus</strong></p>, <p><strong>relationship between Chickenpox</strong>&nbsp;&amp; <strong>shingles</strong></p><p></p>, <p>Which <strong>DNA viruses </strong>are <strong>enveloped</strong>?</p>, <p>Which <strong>DNA viruses </strong>are <strong>unenveloped</strong>?</p>, <p><strong>largest</strong> and <strong>most complex viruses</strong>?</p>, <p><strong>characteristics of Epstein Barr</strong></p>, <p><strong>characteristics of Hepatitis B viruses</strong>?</p>, <p>What do <strong>papillomaviruses causes?</strong> Which <strong>strains</strong> are most important? <strong>vaccines available?</strong></p>, <p>What viruses are <strong>enveloped segmented single-stranded RNA viruses</strong>?&nbsp;</p>, <p>What is meant by the terms <strong>antigenic drift and antigenic shift?</strong></p>, <p>purpose of the <strong>surface spikes on influenza virus?</strong>&nbsp;</p>, <p>How many <strong>people die of the flu each year in the U.S.?</strong>&nbsp;</p><p></p>, <p>What types of <strong>vaccines/treatments</strong> are available for <strong>influenza?&nbsp;</strong></p>, <p>What diseases are caused by <strong>hantavirus</strong></p>, <p>What diseases are caused by <strong>paramyxovirus?</strong></p>, <p><strong>complications associated with measles?</strong></p>, <p><strong>enveloped non-segmented RNA viruses?&nbsp;</strong></p>, <p>disease caused by <strong>rhabdovirus </strong>and <strong>characteristics</strong>? How is the disease <strong>treated/prevented?</strong></p>, <p><strong>two major filoviruses</strong></p>, <p>t<strong>reatment/prevention </strong>Ebola </p>, <p>t<strong>reatment/prevention </strong>Marburg Virus&nbsp;</p>, <p><strong>diseases</strong> caused by each of the <strong>three major coronaviruses?&nbsp;</strong></p>, <p><strong>How does COVID-19 cause death?</strong></p>, <p>COVID <strong>prevented/treated?</strong></p>, <p><strong>two types of coronavirus testing</strong> and how do they<strong> differ</strong>?</p>, <p>disease caused by <strong>rubrivirus? Who? prevented</strong>?</p>, <p><strong>hepatitis C contracted?</strong> How is it <strong>treated?</strong></p>, <p><strong>arboviruses? </strong>What <strong>diseases</strong>? <strong>controlled</strong>?&nbsp;</p>, <p>What qualifies a virus as a<strong> retrovirus?</strong></p>, <p><strong>GP-120 and GP41 in HIV?</strong></p> flashcards
final study guide LETS GOOOOOO

final study guide LETS GOOOOOO

  • characteristics of the genus Staphylococcus?

    -On skin and mucous membrane

    Non-motile, non-spore forming, Gram(+) cocci in clusters

    •Resistant to temperature, osmotic pressure (high salt concentration), drying

    -catalase (+)

    commensals (many bacteria)

  • species of Staphylococcus that are pathogenic

    •S. aureus

    •S. Epidermidis, S.capitis, S.hominis

    •S. saprophyticus

  • most important staphylococcal pathogen? virulence factors?

    S. Aureus- most resistant 

    Withstand salt, Ph, temp, drying, disinfectants

    Coagulase :clots plasma, can prevent phagocytosis

    •Opportunistic infection

    invade the host

    Hyaluronidase  ->  Destroys host tissues

    •Hemolysins  ->  Lyse RBCs

    •Leukocidins  ->  Destroys WBCs

  • Staphylococcal infections generally present?

    Abscess- pus 

    Folliculitis- inflammation of hair follicles

    -systemic: Endocarditis (heart)

    Hidradenitis- inflammation of gland

    Furuncle- boil from hair follicle

    - systemic Osteomyelitis (bones)

    Carbuncle (large)-> Pneumonia (lungs)

  • Staphylococcus epidermidis and Staphylococcus saprophyticus cause

    healthcare associated infections (endocarditis, bacteremia, UTI’s)

    UTI’s in sexually active women

  • local and systemic infections caused by S. aureus

    Folliculitis (hair follicle)->  Endocarditis (heart)

    Furuncle (boil) -> Osteomyelitis (bones)

    Carbuncle (large)-> Pneumonia (lungs)

  •  toxins produced by Staphylococcus and what toxigenic disease

    Enterotoxin

    •Food intoxication: Enterotoxin is heat resistant, vomit

    Staphylococcal scalded skin syndrome toxin causes SSSS in umbilical/ eye babies and bullious impetigo in all ages

    •Toxic shock syndrome: superantergen TSS toxin

    fever, shock, low blood pressure, can be fatal

    •Toxin is released in high levels when magnesium is not present(low flow)

  • drugs to combat S. aureus

    drainage

    resistant to penicillin

    –cillins, cephalosporins, sulfa drugs, tetracycline

    Vancomycin, quinupristin “drug of last resort”

  • MRSA and VRSA? 

    •MRSA: Methicillin resistant Staphylococcus aureus- use vancomycin

    •VRSA: Vancomycin resistant Staphylococcus aureus •quinupristin/dalfopristin

  • characteristics used to differentiate Staphylococci from Streptococci?

    Catalase test: Staphylococcus catalase +, strep catalase-

    Coagulase test: Staphylococcus aureus coagulase + other Staphylococcus coagulase -

    Serological tests:  Antibody based tests can identify S. aureus quickly

  • characteristics of Streptococcus?

    •Non-motile, non-spore forming

    Gram (+) cocci in long chains.

    Facultative anaerobes,

    do not survive well outside the host

  • How are members of the Streptococcus classified

    Lancefield groups: type of carbohydrates on cell wall

    A- S. pyogenes

    B- S. agalactiae

    D- Enterococcus facecalis,

    H S. sanguinis

    S mutans and S. pneumonia none

  • What diseases are caused by Streptococcus pyogenes group A

    Group A (GAS) Streptococcus pyogenes

    pyoderma (impetigo)- skin infection

    •Streptococcal pharyngitis (Strep throat)

    scarlet fever- if erythrogenic toxin=

    necrotizing fasciitis (“flesh-eating disease”)- below skin

    S. pyogenes pneumonia

    Long term complications

    •Rheumatic fever: joints and heart.  May damaged heart valves

    •Glomerulonephritis:  Kidney damage.

  • characteristics of S. pyogenes?

    Group A

    Gram+ cocci, non motile non spore forming.

    Beta hemolysis

    sensitive to bacitracin

    C-carbohydrate on surface to prevent lysozyme

    strep throat, scarlet fever, rheumatic fever, glomerulonephritis

  • Streptococcal virulence factors? 

    •C-carbohydrate on wall,: Protects against lysozyme

    •M-protein: Fimbriae. Resists phagocytosis and adhere to host cells

    •C5a protease: Inhibits one of the proteins in the complement cascade

    •Hemolysins:  Streptolysin S (SLS), Streptolysin O (SLO) Attacks kidney, heart, muscle

  • causes scarlet fever?

    •Some strains of S. pyogenes carry a prophage for erythrogenic toxin(pyrogenic) that produce fever and red rash

  • Where is Group B streptococcal disease found? How is is prevented/treated? 

    •Streptococcus agalactiae

    •β-hemolytic

    found in vagina

    •Causes wound infections in elderly and diabetic

    •Meningitis in newborns when women has •S. agalactiae while birth

    Penicillin is effective treatment

  • Who is at risk for Streptococcus pneumoniae infection? prevented? What drugs are used to treat Streptococcal infections?

    pneumococcus

    pairs and short chains, α-hemolytic,

    no Lancefield group

    thick capsule (phagocytosis difficult)

    •Infection: otitis media (middle ear infection) in children

    meningitis- all age

    pneumonia in older adult/ immune compromised

    Vaccines: Prevnar 13 (13-valent), Pneumovax (23-valent)

    •Penicillin or cephtriaxone are effective treatments

  • major genera of Gram-negative cocci?

    Neisseria,

    Branhamella,

    Moraxella

  • •Neisseria:

    Non-motile, non-spore forming, bean shaped diplococci.  Fastidious.

    •gram - , fimbriae, catalase

    •Two main pathogens

    •Neisseria gonorrhoeae

    •Neisseria meningitides

  • Neisseria gonorrhoeae signs/symptom? spread? Treated?

    Gonococcus- spread thru sex, birth,

    •Pili, Capsules, Protease which inhibits IgA, Lipopolysaccharide  

    presence of cells within neutrophils = infection

    Painful urination

    female: may be asymptomic

    salpingitis- type of pelvic inflammatory disease (PID) ectopic pregnancy (baby outside uterus)

    •Combined drug therapy with ceftriaxone and azithromycin (resistance to penicillin in PPNG strains)

    Birth: tetracycline or erythromycin ointment  is always applied to the eyes

  • Neisseria meningitides signs/symptom? spread? Treated?

    Neisseria meningitidis-

    gram - cocci, diplococci, positive oxidase, ferment maltose not sucrose/lactose

    capsule and fimbriae, endotoxin

    Meningitis

    cerebrospinal meningitis- inflammation of brain/spinal cord

    •Fever, stiff neck, photophobia, confusion

    Meningococcemia

    meningococcal septicemia (bloodstream infection)

    •Fever/chills, cold hands and feet, vomiting, dark purple rash (petechiae)

    spread thru respiratory secretions

    vaccine

    Menactra, Menveo

    Bexsero, Trumenba(serotype B for child)

    •Treatment: broad spectrum antibiotics ceftriaxone

    •Close contacts: prescribed prophylactic antibiotics (rifampin or ceftriaxone)

  • major endospore forming gram + rod?

    Bacillus 

    Clostridum

  • gram + rod distinguished from one another? 

    Endospore formers? 

    Oblige anaerobe vs aerobic/faculative anaerobe

    Regular shape/ staining properties

    Acid fast, filamentous branching cell

  • diseases are caused by each in gram + rod

    Bacillus anthracis

    Clostridium tetani

    Clostridium perfringens

    Clostridium botulinum 

    Clostridioides difficile

    Listeria monocytogenes

    Corynebacterium diphtheria

    Mycobacterium tuberculosis

    Mycobacterium leprae

  •  Who is most at risk for anthrax?

    People who work with animal

  • characteristics of C. tetani

    • in soil/GI tract of animals

    •Obligate anaerobe

    •Produces tetanospasmin (toxin)

    •Causes tetanic paralysis(muscle lock)

    •prevent Vaccine (tetanus toxoid)

    •Treatment

    Human tetanus immune globulin (HTIG)

    •antibiotics: metronidazole or penicillin

    •Mechanical ventilation/muscle relaxants

  • characteristics of  C. perfringens,

    Gas gangrene (Myonecrosis)infection of soft tissue and food poisonings

    •Obligate anaerobe

    •Mixed infections

    •Treatment

    Cleansing/debridement of wounds

    •Clindamycin, antibiotics

    •Hyperbaric oxygen treatment

  •  characteristics of  C. botulinum

    •Spores on soil, water, animal intestine

    droopy eyelid, hard to speak

    •Descending flaccid paralysis(motor), death from paralysis of respiratory muscles 

    •Botulinum toxin:

    •Prevent release of acetylcholine ( botox)

    •food intoxication, Infant botulism (floppy baby syndrome), Wound

    Prevention: boiled for 10 minutes

    no honey for baby

    don't inject

    Treatment

    antitoxin (anti-botulinum antibodies) mechanical ventilation

  •  characteristics of  Clostridioides difficile. location, detected, cause, treatment

    C-Diff

    normally small amount in intestine

    diarrhea, inflamed colon,

    ELISA to detect toxins in fecal samples

    long term broad antibiotic causes superinfection

    Treatment

    •Withdrawal of antibiotics

    vancomycin or metronidazole

    •Fecal microbiota transplantation (eat poop)

  • divide gram + rods non endospore into regular and irregular.

    irregular- stain unevenly

    Corynebacterium, mycobacterium, nocardia

    Regular

    Listeria & eysipelothrix

  • characteristics of Listeria monocytogenes?Where found? prevent it from infecting humans?

    •Listeriosis

    •Gram-positive, regular, rods

    grows in cold, psychrotroph

    •found in dairy, poultry, and processed meat

    •immunodeficient patient-affect brain, meningitis

    •Pregnant woman (miscarriage, birth defects)

    •Prevention/Treatment

    •Pasteurization, adequate cooking

    •Antibiotic, ampicillin/gentamicin and trimethoprim sulfamethoxazole

  • How many cases of diphtheria are typically seen in the U.S.? Why?

    Corynebacterium diphtheria

    0.01 case per million population extremely rare in US thanks to vaccination DTap (no cases since 2014)

    •16,000 cases reported worldwide

    •Gram-positive, irregular rods

    • production of diphtherotoxin, which affects heart and nerves

    •Antibiotics to stop infection

    •Antitoxin to reverse effects of toxemia

  • characteristics of acid-fast bacilli? What diseases?

    Mycobacterium

    •Low infectious dose

    resistant to drying and germicides

    •Very slow growing 

    •Cord factor (allows cells to form long aggregates)

    •Most species are saprobes, but several pathogens exist

    •Mycobacterium tuberculosis

    •Mycobacterium leprae

  • causative agent of Hansen’s disease? signs, if untreated

    Mycobacterium leprae (leprosy)

    humans and armadillos

    predisposing factor: defective T cell, poor health, long term contact with it

    years of incubation for disease

    •Single lesion paucibacillary (SLPB)-spots

    if untreated:

    Paucibacillary (PB) hypopigmented patches, loss sensation

    •Multibacillary (MB): • necrosis and disfigurement (sport and death of cell)

    •Treatment: long-term antibiotic therapy

  •  what organism is cord factor found?

    Mycobacterium tuberculosis

    Cord factor is responsible for long strands of cell upon examination and is correlated with increased virulence

  • stages of tuberculosis?

    •Primary TB: tubercles in lung (red areas). mild fever

    •Secondary TB: Reactivated primary disease: coughing, fever, bloody sputum, weight loss. 60% mortality if untreated

    •Extrapulmonary TB: Spread of cells to other organs, lymph nodes, kidneys, brain. Usually fatal

  •  Mycobacterium leprae treated

    long-term antibiotic therapy sane as TB

    •Multidrug therapy for 6-9 months

    •First line drugs

    •Isoniazid

    •Rifampin

    •Ethambutol

    •Pyrazinamide

    •Second line drug (Pretomanid) used for MDR-TB and XDR-TB

  • Mycobacterium tuberculosis treated

    •Multidrug therapy for 6-9 months

    •First line drugs

    •Isoniazid

    •Rifampin

    •Ethambutol

    •Pyrazinamide

    •Second line drug (Pretomanid) used for MDR-TB and XDR-TB

  • Gram-negative pathogens have what virulence factor in common?

    Lipopolysaccharide(LPS) which act as endotoxin to produce systemic effect

  • characteristics of Pseudomonas? Where is it found and who is most at risk?

    gram - rod aerobe

    on soil, sea water, fresh water

    highly versatile

    degrade natural substance, food spoil

    in homes and hospital

  • disease caused by Bordetella pertussis? Who is most at risk? How is whooping cough prevented/treated? 

    •Obligate aerobe

    •Cause of Pertussis whooping cough,

    endotoxin destroy cell

    •Catarrhal stage: Cold-like

    •Paroxysmal stage: Severe coughing “whoops”

    •Adults: mild symptoms

    •Infants: highest risk of death

    •Acellular vaccine (aP in dTaP)

    Five doses plus a booster at 11-12, not completely effective

    •Treatment-Azithromycin or clarithromycin

  • Characteristics, disease, found? who is at risk? treatment?

    Pseudomonas aeruginosa

    •Obligate aerobe

    •Blue/green pigment

    slime layer, enotoxin, endotoxic shock

    •soil/water and intestine of health people

    hot tub, soap, sponge,

    opportunistic: Burn/cystic fibrosis patients

    •cause Endocarditis, pneumonia, meningitis

    •Healthy patients: rash, UTI, external ear infection

    •Susceptibility testing required

    •Extensive drug resistance

    cephalosporin, aminoglycoside, polymixin

  • Characteristics, disease, and how infectious occur, Where Legionella found

    Legionella pneumophilia

    •Obligate aerobe

    •Cause of Legionnaires disease

    •Fever, cough, may progress to pneumonia

    •Opportunistic

    •Air conditioning, hot tubs, showerheads, vegetable sprayers + natural sources

    •Legionella survive within various protists, and phagocytes within humans

    •Prevention: chlorination and elimination of standing water

    •Treated: Levofloxaxin broad spectrum antibiotics

    •Pontiac fever: Mild, related disease, self limiting

  • surface antigens on Gram-negative E. coli what diseases? STEC?

    H- flagellar antigen

    K- capsule and fimbrial antigen

    O- somatic or cell wall antigen

    •Reservoir in intestines of cattle

    •Traveler's diarrhea, Infantile diarrhea can be deadly

    STEC: Shiga toxin producing E. coli

    •O157:H7: cause hemorrhagic colitis

    •Hemolytic Uremic Syndrome (HUS),Kidney damage

    •50%-80% of Urinary Tract Infections (UTIs)

    indicator of fecal contamination of food/water\

    •Control: clean food, pasteurization

    hydration and rest

    Bismuth salicylate (pepto bismol)

  • Pathogenic E. coli infections may be seen in what areas of the body?

    Enterohemorrhagic(EHEC) or STEC- damage to kidney

    Enterotoxigenic (ETEC)- small intestine

    Enteroinvasive(EIEC)- large intestine

    Enteropathogenic(EPEC)- infantile diarrhea

    Enteroaggregative(EAEC)- intestinal mucosa

    Dissusely adgerent(DAEC)- pediatric diarrhea

  • two major types of Salmonella? difference between the two?

    Salmonella enterica Typani cause typhoid fever

    Salmonella Paratyphi- paratyphoid disease

    Human host

    Antibiotic treatment- ciprofloxacin or ceftriaxone

    Salmonella bongori- cold blooded animal like lizards

    •Nontyphoidal salmonelloses

    other Salmonella serotypes

    , causing diarrhea.  Lasts 2-5 days

    •Normal microbiota of cattle, poultry, rodents, reptiles

    •Uncooked/unpasteurized milk, meat, eggs present risk

  • risk factors for contracting Salmonella? prevented/treated?

    •Typhoid fever, diarrhea

    Washing food, and hands

  • How is Shigella transmitted? What disease does it cause?

    Shigellosis

    invasion of large intestine from five Fs

    •Feces, food, fingers, flies, fomites

    •Shiga toxin lead to bleeding and heavy mucus

    •Bloody, mucus-filled diarrhea

    •Damages nerve cells, intestines, kidneys

    Treatment: ciprofloxacin or sulfatrimethoprim

  • Where Yersinia pestis found? What disease does it cause?  bacteria transmitted? treated?

    Bubonic plague: enlarged lumph bubos (swollen lymph nodes)

    •Black death: darkening of skin

    •Pneumonic plague: Localized to lungs

    •Found and Spread through bite of infected fleas, handling infected animals

    •Prevention: quarantine/kill animal hosts

    •Treatment with broad antibiotics: streptomycin, gentamicin, doxycycline and ciprofloxacin

  • Spirochetes include what pathogenic genera?

    Treponema 

    Leptospira 

    Borrelia

  • causative agent of Syphilis?

    Treponema pallidum

    •Sexually Transmitted Disease (STD or STI)

    •Fastidious.  Doesn’t survive long outside the body

  •  differences between primary, secondary and tertiary syphilis? control?

    •Primary syphilis: Hard chancre at point of contact (genitals, mouth)

    •Secondary syphilis: Spread of bacterium. (don’t treat primary becomes secondary) Fever headache, sore throat “Nickel and Dime” rash on the palms and soles

    •Tertiary syphilis: Occurs after long (20 year) latent period. Damage to multiple organs untreated

    •Gummas: Tumors

    •Neurosyphilis: Blindness, convulsions, mental deterioration

    •Argyll-Robertson pupil (pupil not round)

    Penicillin G for all stages

  • characteristics of Leptospira? acquired? Where would you be most likely to acquire the disease? 

    Leptospira interrogans

    •Zoonosis, found in many animals

    •Bacteria are shed in the urine of infected animals(cuts, usually in streams)

    •Disease is concentrated in tropics, most U.S. cases found in Hawaii

    •Flu-like disease, progresses to include hallucinations

    •Serological detection

    •Early treatment with doxycycline is effective 

  • characteristics of Borrelia?

    •Human infection is transmitted by ticks or lice

    •Two major species

    •Borrelia hermsii: Relapsing fever (antigen mutation ensure relapse)

    •Borrelia burgdorferi: Lyme disease

    •Relapsing fever occurs because the spirochete changes its surface antigens, so antibodies only protect for a short time

    •Treatment is doxycycline

    •Prevention relies on avoiding ticks and lice

  • diseases caused by members of the genus Borrelia?

    •Borrelia hermsii: Relapsing fever (antigen mutation ensure relapse)

    •Borrelia burgdorferi: Lyme disease

  • causative agent of Lyme disease? characteristics? controlled? spread

    •Borrelia burgdorferi:

    •Lyme disease, spread by ticks, endemic to NE U.S.

    •70% of cases display bullseye rash

    •Without treatment, disease progresses to neurologic, cardiac and arthritic symptoms

    •Detection relies on serological testing (ELISA)

    •Early treatment with doxycycline,

    prevention: avoid ticks and outdoors

  • diseases caused by bacteria in the genus Vibrio? Where would you contract these diseases, and who is most at risk for serious complications?

    Vibrio cholerae

    dirty water

    •death via secretory diarrhea due to cholera toxin 

    •Treatment: replacement of electrolytes (Gatorade) and antibiotics

    •Prevention: water purification and proper sewage disposal

    •Vaccine: limited protection for ~2 years

    •Rare in the U.S.

    Vibrio parahaemolyticus

    •Salt tolerant microbes, severe gastroenteritis

    consumption of squid, mackerel, tuna, oysters etc.

    •Prevention: proper refrigeration/cooking of seafood

    Vibrio vulnificus

    • more severe

    lethal in individuals with diabetes/liver disease

    enter wounds and cause disease

    •Prevention : cook/storage of seafood. no brackish water with cuts

    Salty water

  • characteristics of Campylobacter

    curved, spiral bacilli in S shape, gull winged pair. spinning motility

  • characteristics of Campylobacter jejuni

    •Cause Campylobacter gastroenteritis(stomach ache)

    •Common resident of birds and mammals (raw chicken)

    •CJT:  Enterotoxin that stimulates secretory diarrhea

    •75 deaths, mostly compromised patients

    •Treatment :replacement of electrolytes

  • What disease is caused by Helicobacter pylori

    •Cause of stomach and duodenal ulcers

    •Favors a low pH environment

    •Treatment centers on antibiotic therapy plus acid inhibitors

  • major characteristics of Rickettsia?

    •Tiny parasitic bacteria

    •Part of life cycle takes place in arthropod vectors (lice, fleas, ticks)

    •Major diseases are typhus and spotted fever

  • disease Rickettsia prowazekii? transmitted?

    •Epidemic typhus

    Carried by lice (associated with overcrowded living conditions)

    •Flulike, rash, mortality up to 60% in older patients

    •Treatment: antibiotics doxycycline or chloramphenicol , along with anti- louse soap/shampoo

    insecticides of living spaces

  • disease Rickettsia typhi? transmitted?

    •Endemic typhus, worse than prowazekii

    •Carried by fleas

    •workers in rat infested sites

    •Flu-like, rash, milder symptoms than R. prowazekii

    •Treatment: antibiotics doxycycline or chloramphenicol

  • disease Rickettsia rickettsia? transmitted?

    •Cause of Rocky Mountain Spotted Fever

    • Eastern US Transmitted by ticks thru dog then to human 

    •Flulike + red spotted rash, cardiovascular and CNS involvement

    •Detected via ELISA or PCR

    •Treatment: doxycycline

    avoidance of tick bites

  • structure of viruses

    •Outer protein coat, inner nucleic acid

    •RNA or DNA, not both

    •Some viruses possess envelope and spikes

    •Envelope derived from host cell membrane

    •Spikes aid in attaching to host cells

    •Host range/tissue tropism

  • type of nucleic acid is found in the genome of viruses. Do they have all the genes they need for infection and metabolism

    RNA or DNA, not both need a host for metabolism

  • How is viral infection typically diagnosed?

    Symptoms! (virus attack specific host range, lung)

    Serological detection of envelope, viral spikes, or production of antibodies against a virus

    Polymerase chain reaction of viral DNA/RNA 

  • risk of contracting smallpox

    Poxvirus

    fever, malaise, prostration and rash

    variola major: toxemia shock and intravascular coagulation

  • characteristics of herpes simplex I and II? differ? treated

    HSV-1

    •Herpes keratitis (ocular herpes): spreads to the eye via fingers or the ophthalmic branch of the trigeminal nerve

    Herpetic whitlows: Health care workers

    HSV-2 Genital lesions

    •Neonatal herpes: during birth

    •Split between HSV-1 and HSV-2

    can be deadly for baby

    Acyclovir limits viral shedding during third trimester

    C-section

  • diseases caused by varicella-zoster virus

    Chickenpox when reactivated (x-rays, drugs, surgery…) shingles

  • relationship between Chickenpox & shingles

    •Cause of chickenpox in children (rash spread across face and trunk)

    •Shingles appears as a single limited rash (dermatome)

    •Post-shingles neuralgia can cause months-long pain

    •Patients with shingles can infect others with chickenpox

    •Both diseases are diagnosed based on symptoms

    •Vaccine protects against chickenpox

    •Vaccine after age 50 protects against shingles

    •Acyclovir may lessen symptoms

  • Which DNA viruses are enveloped?

    Poxviruses 

    Herpesviruses

    Hepadnaviruses

  • Which DNA viruses are unenveloped?

    Adenoviruses

    Polyomaviruses

    Papillomaviruses

    Parvoviruses

  • largest and most complex viruses?

    Poxvirus

  • characteristics of Epstein Barr

    Epstein-Barr Virus (a herpes virus)

    •Infectious mononucleosis

    •Found in lymphoid tissue and salivary glands

    •“kissing disease”

    •Sore throat, swollen tonsils, fever, malaise

    • Burkitts lymphoma: B-cell cancer that swells the cheek

    •Immunocompromised patients

    •Diagnosed via abnormal white blood cells, PCR

    •Treatment: relief of symptoms

    Ganciclovir may be used to help airway

  • characteristics of Hepatitis B viruses?

    Hepatitis B (a hepadnavirus) DNA virus

    •bilirubin causes jaundice

    •Fever, rash

    •Spread via blood, sexual contact, needles

    •Chronically carried (long term)

    •Risk of cirrhosis liver cancer

    •Detection via serological testing

    • vaccine for under 18

    •Treatment for severe infection: interferon and Hepatitis B immune globulin (HBIG)

  • What do papillomaviruses causes? Which strains are most important? vaccines available?

    Nonenveloped and single stranded

    •Cause of warts, genital wart

    •Spread via contact with warts or, less often, fomites

    strains HPV 16 and 18

    •70% of metastatic tumors (cervix and penis)

    Gardasil 9 Vaccine protects against the nine strains most strongly linked to cancer

    •Recommended for children 11-18 (prior to sexual activity) 

  • What viruses are enveloped segmented single-stranded RNA viruses

    Orthomyxoviruses -influenze

    Bunyaviruses- hantavirus pulmonary syndrome

    Arenavirus- Lassa fever

  • What is meant by the terms antigenic drift and antigenic shift?

    •Antigenic drift

    •Nonsegmented genomes change slowly over time via mutation

    •Immunological memory offers protection

    •Antigenic shift

    Segmented genomes may join within a single cell creating a unique virus

    •Leads to rapid change in virus

    No immunological memory

  • purpose of the surface spikes on influenza virus? 

    Orthomyxovirus: Influenza

    •Two types of surface spikes

    •Hemagglutinin: Allow virus to bind to respiratory receptors (18 types)

    •Neuraminidase: Breaks down mucus, assists budding of new viruses from host cell.

    Flu viruses named for their combination of H and N spikes 

  • How many people die of the flu each year in the U.S.? 

    50,000 deaths/year. Mostly old, young

  • What types of vaccines/treatments are available for influenza? 

    •Injectable vaccine: Inactivated virus

    •Inhaled vaccine: Live virus

    •High dose vaccines are available for older patients

    •Treatment:

    •Relenza, Tamiflu, Rapivab : Block viral budding and release

    •Xofluva: Blocks viral RNA synthesis

  • What diseases are caused by hantavirus

    hantavirus

    •Hantavirus pulmonary syndrome

    •Severe pulmonary (lung) disease

    •Carried by deer mice feces (Yosemite)

    •Southwest U.S.

  • What diseases are caused by paramyxovirus?

    parainfluenza and

    Mumps: Swollen parotid glands, flulike symptoms

    •Spread respiratory secretions

    •Diagnosed: symptoms/serological testing

    •Prevention through vaccination (MMR)

    •Few thousand cases per year in small outbreaks

  • complications associated with measles?

    Morbillivirus: Measles (Rubeola) 

    •Severe, flulike symptoms

    •Extremely contagious

    •Identified by skin rash, Koplik's spots in mouth

    •Complications

    Subacute sclerosing panencephalitis (SSPE): Occurs 7-10 years later, ends in coma and death

    •Deafness, neurological deficits

    •Pneumonia

    •Immune amnesia: Memory T and B cell for diseases other than measles are lost.  Leaves patients vulnerable 

    •Prevention relies on vaccination (MMR)

    •Treatment is based on alleviating symptoms 

  • enveloped non-segmented RNA viruses? 

    Paramyxoviruses- Measles, mumps

    Rhabdoviruses- rabies

    Filoviruses- Ebola fever

    Corona virus- SARS, MERS

    Togavirus- Rubella

    Flavivruses- Dengue fever, Zika virus

  • disease caused by rhabdovirus and characteristics? How is the disease treated/prevented?

    Rhabdovirus: Rabies lyssavirus 

    •Slowly progressing, neurologic, zoonotic disease

    •1-3 human cases/year, 40,000 people/year receive post-exposure prophylaxis (U.S.)

    •Neurological symptoms

    •Furious phase: seizure, twitching, hydrophobia

    •Dumb phase: paralyzed, disoriented, coma, death

    •Untreated disease is 100% fatal

    bite of unprovoked mammal

    •Treatment: passive immunization with human rabies immune globulin (HRIG) on day 1 and vaccination on days 1, 3, 7, and 14. 

    Negri bodies in brain tissue may be seen upon autopsy

    Wild animals may be vaccinated to reduce vectors

  • two major filoviruses

    Ebola and Marburg Virus 

  • treatment/prevention Ebola

    Contact with infected animal/fluid of infected person

    •Ebola treatment with monoclonal antibodies (Inmazeb) approved October 2020

    supportive care

  • treatment/prevention Marburg Virus 

    •Marburg virus has no treatment or preventative beyond supportive care

  • diseases caused by each of the three major coronaviruses? 

    •2002 SARS (severe acute respiratory syndrome)

    •2012 MERS (Middle East Respiratory Syndrome, MERS-CoV)

    •2019 Novel coronavirus (SARS-CoV-2)

    •SARS-CoV-2 spreads mostly via respiratory droplets

    •Droplets don’t stay airborne long

  • How does COVID-19 cause death?

    SARS-CoV-2 binds to angiotensin-converting enzyme 2 (ACE2), on cell membrane of lungs, vascular epithelium, kidneys, other tissues

    •SARS-CoV-2 can induce hyper-immune response in some people (severe disease)

    •Cytokine release syndrome: Systemic inflammation driven by T cells (mostly IL-6)

    •Organ failure: kidney, heart, liver

    •Inflammation of the vasculature allows blood and fluid to fill the lungs leading to acute respiratory distress syndrome (ARDS)

    •~70% of deaths due to ARDS

    •~30% of deaths due to multi-organ failure

  • COVID prevented/treated?

    Treatment

    •Maintenance of oxygen levels

    •Treatment of bacterial and fungal infections

    Dexamethasone: Steroid. Reduces immune response

    •Remdesivir: Inhibits viral RNA polymerase

    •Paxlovid: Inhibits protease needed for replication

    •Molnupiravir: Cause multiple mutations in the viral RNA

    •Paxlovid and Molnupiravir can both be taken after symptoms occur and can shorten course of disease.

    •Monoclonal antibody therapy

    •Bamlanivimab: Binds to viral spikes, prevents entry of virus into cells.

    Prevention

    •Moderna and Pfizer vaccines are mRNAs that invade muscle and epithelial cells (like a virus) and produces viral spike proteins

    •Proteins elicit an immune response

  • two types of coronavirus testing and how do they differ?

    •Nucleic acid amplification tests (NAATS)

    •PCR (polymerase chain reaction), others

    •Used to intensify coronavirus RNA

    •Do you have the virus in your body?

    •Nasal swab

    •Accurate even without symptoms

    •Serological testing

    •Do you have antibodies against the virus?

    •IgM: new infection

    •IgG: old infection

    •Most accurate after symptoms have begun  

  • disease caused by rubrivirus? Who? prevented?

    Togavirus

    Rubella (German measles)

    •spread through respiratory and college dorm

    •Teratogenic when pregnant women are infected (congenital rubella syndrome)

    •Eliminated from U.S. in 2004, still prevalent worldwide

    •Prevented through vaccination (MMR)

  • hepatitis C contracted? How is it treated?

    Flavivirus

    blood contact, needles (not generally sexual)

    • increased risk of liver cancer

    •Diagnosed by detecting antibodies to the virus

    •Treatment: Harvoni, a combination of two drugs, taken for 12 weeks

    •93%-99% cure rate

  • arboviruses? What diseases? controlled

    (Arthropod born)

    •Fever, rash, flu-like symptoms, hemorrhagic fever(bleed from eyes), maybe meningitis

    •West Nile Virus, Colorado tick fever, Yellow fever, Various encephalitides

    •Sentinel animals track spread

    •Aedes aegypti mosquito-borne viruses

    •Chikungunya

    •Dengue: breakbone fever

    •Zika: Birth defects: microcephaly

    •Sexual transmission

    •Control

    •Yellow fever: Vaccine

    mosquito control

  • What qualifies a virus as a retrovirus?

    •Backward (retro) flow of genetic info RNA ->DNA

    •Reverse transcriptase produce DNA from RNA genome

    •Viral DNA integrates into host cell genome

    •Three retroviruses infect humans

    •Human T cell Leukemia virus I and II (HTLV-1, HTLV-2)

    •Human Immunodeficiency Virus (HIV)

  • GP-120 and GP41 in HIV?

    •HIV has two envelope proteins (spikes) that allow binding to CD4 host cells

    •GP-120

    •GP-41