MOLECULES OF LIFE More than 96% of all atoms in the human body are hydrogen, oxygen, carbon and nitrogen. 3/22/2016 Bryan James Cowley M.A. 1 INORGANIC COMPOUNDS Composed of elements other than carbon Most abundant is water (H2O) called "universal solvent" since it dissolves so many things. Carbon dioxide (CO2) is the exception to the "no carbon" rule it is found in many chemical compounds of living things. 3/22/2016 Bryan James Cowley M.A. 2 ORGANIC COMPOUNDS ALWAYS CONTAIN CARBON They usually also contain hydrogen or hydrogen and oxygen. They may also contain nitrogen phosphorus or sulfur In 1828 Friedrich Wohler, a German chemist, was the first to demonstrate that organic compounds could be made from inorganic compounds Prior it had been believed that only living organisms could make organic compounds. 3/22/2016 Bryan James Cowley M.A. 3 CARBON •A carbon atom forms four covalent bonds –It can join with other carbon atoms to make chains or rings Structural formula Ball-and-stick model Space-filling model Methane The 4 single bonds of carbon point to the corners of a tetrahedron. 3/22/2016 Bryan James Cowley M.A. 4 CARBON 3/22/2016 Bryan James Cowley M.A. 5 POLYMERS •Most of the large molecules in living things are macromolecules called polymers –Polymers are long chains of smaller molecular units called monomers –A huge number of different polymers can be made from a small number of monomers 3/22/2016 Bryan James Cowley M.A. 6 DEHYDRATION SYNTHESIS The opposite of Hydrolysis Cells link monomers to form polymers by dehydration synthesis Short polymer 3/22/2016 Unlinked monomer Removal of water molecule Bryan James Longer Cowley polymer M.A. 7 HYDROLYSIS The opposite of dehydration synthesis During digestion water is added to a carbohydrate allowing the food to be broken down into smaller molecules that can enter cells Once inside the cell dehydration synthesis may again take place 3/22/2016 Addition of water molecule Bryan James Cowley M.A. 8 CARBOHYDRATES •First group of organic compounds •Chemical formula for all is a multiple of C6H12O6 •Sugars and Starches •from small sugars to large polysaccharides •Energy source •Produced during photosynthesis •Used during cellular respiration 3/22/2016 Bryan James Cowley M.A. 9 MONOSACCHARIDES (Carbohydrates) Simple sugars, contain only one sugar molecule (e.g. Glucose, fructose and galactose). 3/22/2016 Bryan James Cowley M.A. 10 MONOSACCHARIDES (Carbohydrates) The monosaccharides glucose and fructose are isomers They contain the same atoms but in different arrangements Glucose 3/22/2016 Bryan James Cowley M.A. Fructose 11 MONOSACCHARIDES (Carbohydrates) Many monosaccharides form rings, as shown here for glucose Abbreviated structure 3/22/2016 Bryan James Cowley M.A. 12 DISACCHARIDES (Carbohydrates) Double sugars, are two monosaccharides. (e.g. sucrose, maltose) Disaccharides are formed by DEHYDRATION SYNTHESIS where small molecules bond to form large molecules When two monosaccharides bond the result is one disaccharide and one molecule of water. 3/22/2016 Bryan James Cowley M.A. 13 DISACCHARIDES (Carbohydrates) Monosaccharides can join to form disaccharides, such as sucrose (table sugar) and maltose (brewing sugar) Glucose Glucose Sucrose Maltose 3/22/2016 Bryan James Cowley M.A. 14 POLYSACCHARIDES (Carbohydrates) Polysaccharides are long polymers of monomers Formed by dehydration synthesis of many monosaccharides Examples include cellulose, starch (plant sugar storage) and Glycogen (animal sugar storage in liver and muscles). 3/22/2016 Bryan James Cowley M.A. 15 POLYSACCHARIDES (Carbohydrates) These large molecules are polymers of hundreds or thousands of monosaccharides linked by dehydration synthesis 3/22/2016 Bryan James Cowley M.A. 16 PROTEINS AND AMINO ACIDS Second group of organic compounds Comprised mainly of carbon, hydrogen, oxygen and nitrogen Only small amounts of other elements (e.g.sulfur, phosphorus iron and zinc) Greek Proteios meaning "of first importance” Proteins are used for cell growth, maintaince and repair. 3/22/2016 Bryan James Cowley M.A. 17 PROTEINS Proteins are made of molecules of up to 20 different kinds of amino acids strung together like beads Hundreds of amino acids may bond to form a protein When more than two amino acids bond a POLYPEPTIDE is formed When many Polypeptides bond they form a PROTEIN 3/22/2016 Bryan James Cowley M.A. 18 ENZYMES Special proteins that cells produce enabling cellular chemical reactions. Enzymes act as CATALYSTS or chemicals that speed up reactions without changing themselves. Enzymes are specific, that is, they each have their own special job. For example, the enzyme that hydrolyzes maltose is maltase The names of enzymes usually end in-ase. 3/22/2016 Bryan James Cowley M.A. 19 ENZYMES 3/22/2016 Bryan James Cowley M.A. 20 PROTEINS A protein’s primary structure is its amino acid sequence Secondary structure is polypeptide coiling or folding produced by hydrogen bonding Primary structure Amino acid Secondary structure Hydrogen bond Pleated sheet 3/22/2016 Alpha helix Bryan James Cowley M.A. 21 PROTEINS Tertiary structure is the overall shape of a polypeptide Quaternary structure is the relationship among multiple polypeptides of a protein Tertiary structure Polypeptide (single subunit of transthyretin) Quaternary structure Transthyretin, with four identical polypeptide subunits 3/22/2016 Bryan James Cowley M.A. 22 AMINO ACIDS A molecule of an amino acid is made up of three groups of atoms Amino Group (NH2) Carboxyl Group (COOH) R Group consist of a hydrogen atom or a group of hydrogen and carbon atoms. Different amino acids have different R groups. 3/22/2016 Bryan James Cowley M.A. 23 AMINO ACIDS an amino group a carboxyl group an R group, which distinguishes each of the 20 different amino acids Amino group 3/22/2016 Carboxyl (acid) group Bryan James Cowley M.A. 24 AMINO ACIDS Each amino acid has specific properties Leucine (Leu) HYDROPHOBIC 3/22/2016 Serine (Ser) Cysteine (Cys) HYDROPHILIC Bryan James Cowley M.A. 25 AMINO ACIDS Like carbohydrates, amino acids bond by the process of dehydration synthesis When the amino group of one amino acid bonds with the carboxyl group of another a DIPEPTIDE is formed This PEPTIDE BOND joins a carbon atom with a nitrogen atom. 3/22/2016 Bryan James Cowley M.A. 26 AMINO ACIDS Cells link amino acids together by dehydration synthesis The bonds between amino acid monomers are called peptide bonds Carboxyl group Amino group Amino acid Amino acid 3/22/2016 Dehydration synthesis Bryan James Cowley M.A. PEPTIDE BOND Dipeptide 27 LIPIDS Third group of organic compounds Compounds that are oily, greasy, waxy or fatty Lipids form part of the cell membrane In animals lipids provide protection, insulation and energy A Lipid forms by the dehydration synthesis of 3 molecules of fatty acid and 1 molecule of glycerol 3/22/2016 Bryan James Cowley M.A. 28 LIPIDS These compounds are composed largely of carbon and hydrogen They are not true polymers They are grouped together because they do not mix with water 3/22/2016 Bryan James Cowley M.A. 29 LIPIDS Fats are lipids whose main function is energy storage They are also called triglycerides A triglyceride molecule consists of one glycerol molecule linked to three fatty acids Fatty acid 3/22/2016 Bryan James Cowley M.A. 30 LIPIDS The fatty acids of unsaturated fats contain double bonds These prevent them from solidifying at room temperature Saturated fats lack double bonds They are solid at room temperature 3/22/2016 Bryan James Cowley M.A. 31 LIPIDS Phospholipids are a major component of cell membranes Waxes form waterproof coatings Steroids are often hormones 3/22/2016 Bryan James Cowley M.A. 32 FATTY ACIDS & GLYCEROL Fatty acids are long chains of carbon and hydrogen that contain a carboxyl group Glycerol is an alcohol. Alcohols contain a HYDROXYL GROUP (oxygen atom bonded to hydrogen atom, chemical formula -OH). 3/22/2016 Bryan James Cowley M.A. 33 NUCLEIC ACIDS Fourth group of organic compounds Store genetic information, control cellular activity, and direct the making of proteins. 3/22/2016 Bryan James Cowley M.A. 34 NUCLEIC ACIDS There are two types of NUCLEIC ACID Deoxyribonucleic acid (DNA) contains material that caries the "genetic message". Ribonucleic acid (RNA) reads the message encoded in the DNA. and assembles amino acids in the proper order. • There are _ different kinds of RNA. 3/22/2016 Bryan James Cowley M.A. 35 NUCLEIC ACIDS The monomers of nucleic acids are nucleotides Each nucleotide is composed of a sugar, phosphate, and nitrogenous base Nitrogenous base (A) Phosphate group 3/22/2016 Bryan James CowleySugar M.A. 36 DNA has four kinds of bases, A, T, C, and G Thymine (T) Cytosine (C) Adenine (A) Pyrimidines 3/22/2016 Guanine (G) Purines Bryan James Cowley M.A. 37 NUCLEIC ACIDS The sugar and phosphate form the backbone for the nucleic acid Nucleotide Sugar-phosphate backbone 3/22/2016 Bryan James Cowley M.A. 38 DNA DNA consists of two polynucleotides twisted around each other in a double helix The sequence of the four kinds (adenine,guanine,cyto cine and Thymin) of nitrogenous bases in DNA carries genetic information 3/22/2016 Base pair Bryan James Cowley M.A. 39 DNA Stretches of a DNA molecule called genes program the amino acid sequences of proteins DNA information is transcribed into RNA, a single-stranded nucleic acid RNA is then translated into the primary structure of proteins 3/22/2016 Bryan James Cowley M.A. 40 DNA DNA is made of chemical units called nucleotides Each species has its own nucleotide sequence 3/22/2016 Bryan James Cowley M.A. 41 DNA The genetic information in DNA underlies all of the features that distinguish life from nonlife –Order and regulation –Growth and development –Use of energy from the environment –Response to environmental stimuli –Ability to reproduce –Evolutionary change DNA as their genetic blueprint 3/22/2016 Bryan James Cowley M.A. 42 CHEMICALS AND LIFE •Chemical nutrients cycle within an ecosystem’s web •Energy flows in and out constantly Inflow of light energy Air Loss of heat energy Chemical energy Organisms Cycling of chemical nutrients Soil 3/22/2016 Bryan James Cowley M.A.ECOSYSTEM 43 OPARIN'S HYPOTHESIS It is now accepted that organic molecules developed chemically from non-living matter about 3.5 billion years ago. In 1938 Russian biochemist Alexander Ivanovicly Oparin proposed that Earth’s atmosphere was once ammonia, methane hydrogen ad water vapor. This primitive atmosphere was bombarded with heat, ultra-violet light and lightning which caused the breaking and joining of chemical bonds. This led to simple organic compounds (i.e. Amino acids formed) leading to more and more complex molecules Eventually self-reproducing molecules like nucleic acids formed. 3/22/2016 Bryan James Cowley M.A. 44 MOLECULES OF LIFE In 1953, Stanley Miller, recreated this atmosphere in a lab and when the gasses were repeatedly struck with electricity amino acids eventually formed. 3/22/2016 Bryan James Cowley M.A. 45 REVIEW Lipids Proteins Carbohydrates Nucleic Acids 3/22/2016 Bryan James Cowley M.A. 46