1.
2.
3.
4.
5.
6.
7.
8.
9.
10.
11.
12.
13.
14.
15.
16.
17.
18.
19.
20.
21.
22.
23.
Bruce A Babcock, et al., Breaking the link between food and biofuels, CARD Briefing Paper 08-BP 53,
2008
Markus Pauly, et al., Physiology and metabolism: Tear down this wall, Current Opinion in Plant Biology,
2008
Chao Liang, et al., Preferential sequestration of microbial carbon in subsoils of a glacial-landscape
toposequence, Dane County, WI, USA, Geoderma, 2008
Garret Suen, et al., Ancient fungal farmers of the insect world, Microbiology Today, 2008
David M. Cavalier, et al., Disrupting two Arabidopsis thaliana xylosyltransferase genes results in plants
deficient in xyloglucan, a major primary cell wall component, Plant Cell, 2008
Olgs A. Zabotina, et al., Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is
involved in xyloglucan biosynthesis, Plant J, 2008
Douglas A. Landis, et al., Increasing corn for biofuel production reduces biocontrol services in
agricultural landscapes, Proceedings of the National Academy of Sciences U.S.A., 2008
G Philip Robertson, et al., Sustainable biofuels redux, Science, 2008
James Tiedje, et al., Microbes in the energy grid, Science, 2008
Christoph Benning, et al., Harnessing plant biomass for biofuels and biomaterials, The Plant Journal,
2008
Timothy P. Durrett, et al., Plant triacylglycerols as feedstocks for the production of biofuels, The Plant
Journal, 2008
Markus Pauly, et al., Cell-wall carbohydrates and their modification as a resource for biofuels, The Plant
Journal, 2008
Mike Pollard, et al., Building lipid barriers: biosynthesis of cutin and suberin, Trends in Plant Science,
2008
Hongli Feng, et al., Impacts of ethanol on planted acreage in market equilibrium, Working Paper, 08WP 472, 2008
Y-H Percival Zhang, et al., Sessions 3 and 8: Pretreatment and biomass recalcitrance: fundamentals and
progress, Applied Biochemistry and Biotechnology, 2009
Cheng Zhong, et al., Optimization of enzymatic hydrolysis and ethanol fermentation from AFEXtreated rice straw, Applied Microbiology and Biotechnology, 2009
M. D. Casler, et al., Biofuels, bioenergy, and bioproducts from sustainable agricultural and forest crops,
BioEnergy Research, 2009
Bruce E. Dale, et al., Protein feeds coproduction in biomass conversion to fuels and chemicals, Biofuels,
Bioproducts & Biorefining, 2009
Mark Laser, et al., Projected mature technology scenarios for conversion of cellulosic biomass to
ethanol with coproduction thermo-chemical fuels, power, and/or animal feed protein, Biofuels,
Bioproducts & Biorefining, 2009
Mark Laser, et al., Comparative analysis of efficiency, environmental impact, and process economics for
mature biomass refining scenarios, Biofuels, Bioproducts & Biorefining, 2009
Lee R. Lynd, et al., The role of biomass in America’s energy future: framing the analysis, Biofuels,
Bioproducts & Biorefining, 2009
Venkatesh Balan, et al., Lignocellulosic biomass pretreatment using AFEX, Biofuels: Methods and
Protocols, Methods in Molecular Biology, 2009
Rajeev Kumar, et al., Physical and chemical characterizations of corn stover and poplar solids resulting
from leading pretreatment technologies, Bioresource Technology, 2009
24.
25.
26.
27.
28.
29.
30.
31.
32.
33.
34.
35.
36.
37.
38.
39.
40.
41.
42.
43.
44.
45.
Rebecca Garlock, et al., Optimizing harvest of corn stover fractions based on overall sugar yields
following ammonia fiber expansion pretreatment and enzymatic hydrolysis, Biotechnology for Biofuels,
2009
Ming Lau, et al., The impacts of pretreatment on the fermentability of pretreated lignocellulosic
biomass: a comparative evaluation between ammonia fiber expansion and dilute acid pretreatment,
Biotechnology for Biofuels, 2009
Aaron J. Lorenz, et al., Forage quality and composition measurements as predictors of ethanol yield
from maize (Zea mays L.) stover, Biotechnology for Biofuels, 2009
Wesley D. Marner, 2nd, Practical application of synthetic biology principles, Biotechnology Journal,
2009
Venkatesh Balan, et al., Enzymatic digestibility and pretreatment degradation products of AFEXtreated hardwoods (Populus nigra), Biotechnology Progress, 2009
S. Adams, et al., Effects of symbiotic bacteria and tree chemistry on the growth and reproduction of
bark beetle fungal symbionts, Canadian Journal of Forest Research, 2009
Edward J. Wolfrum, et al., Correlating detergent fiber analysis and dietary fiber analysis data for corn
stover collected by NIRS, Cellulose, 2009
Juan Gao, et al., Agronomic management system and precipitation effects on soybean oil and fatty acid
profiles, Crop Science, 2009
J. Lorenz, et al., Characterization, genetic variation, and combining ability of maize traits relevant to
the production of cellulosic ethanol, Crop Science, 2009
Leonardo da Costa Sousa, et al., Cradle-to-grave' assessment of existing lignocellulose pretreatment
technologies, Current Opinion in Biotechnology, 2009
J. H. Van Vleet and Thomas W. Jeffries, Yeast metabolic engineering for hemicellulosic ethanol
production, Current Opinion in Biotechnology, 2009
Alison M. Speers, et al., Anaerobic cell culture, Current Protocols in Microbiology, 2009
Eric J. Caldera, et al., Insect symbioses: a case study of past, present, and future fungus-growing ant
research, Environmental Entomology, 2009
Hyungtae Kim, et al., Biofuels, land use change, and greenhouse gas emissions: some unexplored
variables, Environmental Science & Technology, 2009
D. N. Warrington, et al., Primary particle size distribution of eroded material affected by degree of
aggregate slaking and seal development, European Journal of Soil Science, 2009
L. K. James, et al., Profitability of converting to biofuel crops, Extension Bulletin, 2009
George N. Phillips, Describing protein conformational ensembles: Beyond static snapshots , F1000
Biology Reports, 2009
T. W. Jeffries and J. R. Van Vleet, Pichia stipitis genomics, transcriptomics, and gene clusters, FEMS
Yeast Research, 2009
Rufis Isaacs, et al., Maximizing arthropod-mediated ecosystem services in agricultural landscapes: The
role of native plants, Frontiers in Ecology and the Environment, 2009
S. Nagendran, et al., Reduced genomic potential for secreted plant cell-wall-degrading enzymes in the
ectomycorrhizal fungus Amanita bisporigera, based on the secretome of Trichoderma reesei, Fungal
Genetics and Biology, 2009
Elizabeth D. Sendich and Bruce E. Dale, Environmental and economic analysis of the fully integrated
biorefinery, Global Change Biology, Bioenergy, 2009
Noritsugu Terashima, et al., 2D-NMR (HSQC) difference spectra between specifically 13C-enriched and
unenriched protolignin of Ginkgo biloba obtained in the solution state of whole cell wall material,
Holzforschung, 2009
46.
47.
48.
49.
50.
51.
52.
53.
54.
55.
56.
57.
58.
59.
60.
61.
62.
63.
64.
65.
66.
67.
68.
69.
Manoj Jha, et al., Economic and environmental impacts of alternative energy crops, International
Agricultural Engineering Journal , 2009
Daniel J. Yelle, et al., Characterizing polymeric methylene diphenyl diisocyanate reactions with wood:
1. High-resolution solution-state NMR spectroscopy, International Conference on Wood Adhesives ,
2009
Yong Jiang, et al., Market interactions, farmers' choices, and the sustainability of growing advanced
biofuels: a missing perspective?, International Journal of Sustainable Development & World Ecology,
2009
Edward L. Kunkes, et al., Vapor-phase C-C coupling reactions of biomass-derived oxygenates over
Pd/CeZrOx catalysts, Journal of Catalysis, 2009
Chao Liang, et al., Aminoglycoside antibiotics may interfere with microbial amino sugar analysis,
Journal of Chromatography A, 2009
Joseph B. Binder, et al., Simple chemical transformation of lignocellulosic biomass into furans for fuels
and chemicals, Journal of the American Chemical Society, 2009
Koichiro Awai, et al., Heterocyst envelope glycolipids , Lipids in Photosynthesis, 2009
Mattias Hedenstrom, et al., Identification of lignin and polysaccharide modifications in populus wood
by chemometric analysis of 2D NMR spectra from dissolved cell walls, Molecular Plant, 2009
Matthew P. DeLisa and Robert J. Conrado, Synthetic metabolic pipelines, Nature Biotechnology, 2009
James R. Cole, et al., The ribosomal database project: improved alignments and new tools for rRNA
analysis, Nucleic Acids Research, 2009
Meng Zhang, et al., DGAT1 and PDAT1 acyltransferases have overlapping functions in Arabidopsis
triacylglycerol biosynthesis and are essential for normal pollen and seed development, Plant Cell, 2009
Philip D. Bates, et al., Analysis of acyl fluxes through multiple pathways of triacylglycerol synthesis in
developing soybean embryos, Plant Physiology, 2009
Jaclyn J. Stewart, et al., The effects on lignin structure of overexpression of ferulate 5-hydroxylase in
hybrid poplar, Plant Physiology, 2009
Armin Wagner, et al., Suppression of 4-coumarate-CoA ligase in the coniferous gymnosperm Pinus
radiata, Plant Physiology, 2009
Zhenle Yang, et al., Turnover of fatty acids during natural senescence of Arabidopsis, Brachypodium,
and switchgrass and in Arabidopsis beta-oxidation mutants, Plant Physiology, 2009
Doug K. Allen, et al., Metabolic flux analysis in plants: coping with complexity, Plant, Cell &
Environment, 2009
Aiping Zhang, et al., Ferulate-coniferyl alcohol cross-coupled products formed by radical coupling
reactions, Planta, 2009
Ming W. Lau and Bruce E. Dale, Cellulosic ethanol production from AFEX-treated corn stover using
Saccharomyces cerevisiae 424A(LNH-ST), Proceedings of the National Academy of Sciences U.S.A.,
2009
John Ralph, et al., Quinone Methides in Lignification, Quinone Methides, 2009
John Ohlrogge, et al., Driving on biomass, Science, 2009
Adrian A. Pinto-Tomas, et al., Symbiotic nitrogen fixation in the fungus gardens of leaf-cutter ants,
Science, 2009
Timothy D. Searchinger, et al., Fixing a critical climate accounting error, Science, 2009
Marshall Wise, et al., Implications of limiting CO2 concentrations for land use and energy, Science,
2009
George W. Huber and Bruce E. Dale, Grassoline at the pump, Scientific American, 2009
70.
71.
72.
73.
74.
75.
76.
77.
78.
79.
80.
81.
82.
83.
84.
85.
86.
87.
88.
89.
90.
Yong Jiang, et al., Market interactions, farmer choices, and the sustainability of growing advanced
biofuels, Staff Paper No. 2008-03. Department of Agricultural, Food and Resource Economics, 2009
Feng Song, et al., Switching to perennial energy crops under uncertainty and costly reversibility. Staff
Papers, Staff Paper No. 2009-14, 2009
Seungdo Kim and Bruce Dale, Regional variations in greenhouse gas emissions of biobased products in
the United States—corn-based ethanol and soybean oil, The International Journal of Life Cycle
Assessment, 2009
D. K. Allen, et al., The role of light in soybean seed filling metabolism, The Plant Journal, 2009
Jae-Heung Ko, et al., Ectopic expression of MYB46 identifies transcriptional regulatory genes involved
in secondary wall biosynthesis in Arabidopsis, The Plant Journal, 2009
Yuriy Román-Leshkov and JamesA Dumesic, Solvent Effects on Fructose Dehydration to 5Hydroxymethylfurfural in Biphasic Systems Saturated with Inorganic Salts, Topics in Catalysis, 2009
Manoj Kumar, et al., An update on the nomenclature for the cellulose synthase genes in Populus,
Trends Plant Science, 2009
Douglas A. Landis, Sustainability of biofuels: Future research opportunities, et al., report from the
October 2008 workshop, , 2009
Feng Song, et al., Alternative Land Use Policies: Real Options with Costly Reversibility, Agricultural &
Applied Economics Association 2010 AAEA, 2010
Andrew T. Corbin, Influence of cropping systems on soil aggregate and weed seedbank dynamics
during the organic transition period, Agronomy Journal, 2010
Juan Gao, et al., Effects of manure and fertilizer applications on canola oil content and Fatty acid
composition, Agronomy Journal, 2010
Xinmei Hao, et al., Effects of soil and topographic properties on spatial variability of corn grain ethanol
yield, Agronomy Journal, 2010
Laura K. James, et al., Profitability analysis of cellulosic energy crops compared with corn, Agronomy
Journal, 2010
Hongli Feng and Bruce A. Babcock, Impacts of ethanol on planted acreage in market equilibrium,
American Journal of Agricultural Economics, 2010
Ian A. Lewis, et al., NMR method for measuring carbon-13 isotopic enrichment of metabolites in
complex solutions, Analytical Chemistry, 2010
Kris Morreel, et al., Mass spectrometry-based fragmentation as an identification tool in lignomics,
Analytical Chemistry, 2010
Jeffrey G. Gardner and David H. Keating, Requirement of the type II secretion system for utilization of
cellulosic substrates by Cellvibrio japonicus, Applied and Environmental Microbiology, 2010
Hajime Masukawa, et al., Site-directed mutagenesis of Anabaena sp. strain PCC 7120 nitrogenase
active site to increase photobiological hydrogen production, Applied and Environmental Microbiology,
2010
Amber V. Wymelenberg, et al., Comparative transcriptome and secretome analysis of wood decay
fungi Postia placenta and Phanerochaete chrysosporium, Applied and Environmental Microbiology,
2010
Ming J Lau, et al., Ammonia Fiber Expansion (AFEX) pretreatment, enzymatic hydrolysis, and
fermentation on empty palm fruit bunch fiber (EPFBF) for cellulosic ethanol production, Applied
Biochemistry and Biotechnology, 2010
Elif I. Gürbüz, et al., Integration of C-C coupling reactions of biomass-derived oxygenates to fuel-grade
compounds, Applied Catalysis B: Environmental, 2010
91.
92.
93.
94.
95.
96.
97.
98.
99.
100.
101.
102.
103.
104.
105.
106.
107.
108.
109.
110.
111.
112.
Juan Carlos Serrano-Ruiz, et al., Conversion of cellulose to hydrocarbon fuels by progressive removal of
oxygen, Applied Catalysis B: Environmental, 2010
Patricia J. Kiley and Timothy J. Donohue, Global responses of bacteria to oxygen deprivation, Bacterial
Stress Responses, 2010
Shishir P. S. Chundawat, et al., Thermochemical pretreatment of lignocellulosic biomass, Bioalcohol
Production-Biochemical Conversion of Lignocellulosic Biomass, 2010
Goutami Banerjee, et al., Improving enzymes for biomass conversion: A basic research perspective,
BioEnergy Research, 2010
Michael D. Casler, Changes in mean and genetic variance during two cycles of within-family selection in
switchgrass, BioEnergy Research, 2010
Michael D. Casler, DOE Bioenergy Center Special Issue: The Great Lakes Bioenergy Research Center
(GLBRC), BioEnergy Research, 2010
Dahai Gao, et al., Strategy for identification of novel fungal and bacterial glycosyl hydrolase hybrid
mixtures that can efficiently saccharify pretreated lignocellulosic biomass, BioEnergy Research, 2010
Mary A. Gardiner, et al., Implications of three biofuel crops for beneficial arthropods in agricultural
landscapes, Bioenergy Research, 2010
Candice N. Hansey, et al., Erratum to: Cell Wall composition and ruminant digestibility of various maize
tissues across development, BioEnergy Research, 2010
Ederson da C. Jesus, et al., Bacterial communities in the rhizosphere of biofuel crops grown on marginal
lands as evaluated by 16S rRNA gene pyrosequences , BioEnergy Research, 2010
Nicholas Santoro, et al., A high-throughput platform for screening milligram quantities of plant
biomass for lignocellulose digestibility, BioEnergy Research, 2010
Christopher J. Schwartz, et al., Natural variation of flowering time and vernalization responsiveness in
Brachypodium distachyon, BioEnergy Research, 2010
Steven Slater, et al., The US Department of Energy Great Lakes Bioenergy Research Center:
Midwestern biomass as a resource for renewable fuels, BioEnergy Research, 2010
Luftu Safak Yilmaz, et al., Electron partitioning during light- and nutrient-powered hydrogen
production by Rhodobacter sphaeroides., BioEnergy Research, 2010
Özgül Persil Çetinkol, et al., Understanding the impact of ionic liquid pretreatment on Eucalyptus,
Biofuels, 2010
Jay S. Gregg and R. Cesar Izaurralde, Effect of crop residue harvest on long-term crop yield, soil erosion
and nutrient balance: trade-offs for a sustainable bioenergy feedstock, Biofuels, 2010
Christopher R. Webster, et al., Diversity, productivity and landscape-level effects in North American
grasslands managed for biomass production , Biofuels, 2010
Chao Liang, et al., An absorbing markov chain approach to understanding the microbial role in soil
carbon stabilization, Biogeochemistry, 2010
K. D. Thelen, et al., Integrating livestock manure with corn-soybean bioenergy cropping systems
improves short-term carbon sequestration rates and net global warming potential, Biomass and
BioEnergy, 2010
Goutami Banerjee, et al., Synthetic multi-component enzyme mixtures for deconstruction of
lignocellulosic biomass, Bioresource Technology, 2010
Shishir P. S. Chundawat, et al., Multifaceted characterization of cell wall decomposition products
formed during ammonia fiber expansion (AFEX) and dilute-acid based pretreatments, Bioresource
Technology, 2010
Dahai Gao, et al., Mixture optimization of six core glycosyl hydrolases for maximizing saccharification
of ammonia fiber expansion (AFEX) pretreated corn stover, Bioresource Technology, 2010
113.
114.
115.
116.
117.
118.
119.
120.
121.
122.
123.
124.
125.
126.
127.
128.
129.
130.
131.
132.
133.
134.
135.
Mei Jin, et al., Two-step SSCF to convert AFEX-treated switchgrass to ethanol using commercial
enzymes and Saccharomyces cerevisiae 424A (LNH-ST)., Bioresource Technology, 2010
Ming Lau and Bruce E. Dale, Effect of primary degradation-reaction products from ammonia fiber
expansion (AFEX)-treated corn stover on the growth and fermentation of Escherichia coli KO11,
Bioresource Technology, 2010
Bing-Zhi Li, et al., Process optimization to convert forage and sweet sorghum bagasse to ethanol based
on ammonia fiber expansion (AFEX) pretreatment, Bioresource Technology, 2010
Goutami Banerjee, et al., Synthetic enzyme mixtures for biomass deconstruction: Production and
optimization of a core set, Biotechnology and Bioengineering, 2010
Chandraraj Krishnan, et al., Alkali-based AFEX pretreatment for the conversion of sugarcane bagasse
and cane leaf residues to ethanol, Biotechnology and Bioengineering, 2010
Rebecca M. Lennen, et al., A process for microbial hydrocarbon synthesis: Overproduction of fatty
acids in Escherichia coli and catalytic conversion to alkanes, Biotechnology and Bioengineering, 2010
Bryan Bals, et al., Evaluation of ammonia fiber expansion (AFEX) pretreatment for enzymatic hydrolysis
of switchgrass harvested in different seasons and locations, Biotechnology for Biofuels, 2010
Goutami Banerjee, et al., Rapid optimization of enzyme mixtures for deconstruction of diverse
pretreatment/biomass feedstock combinations, Biotechnology for Biofuels, 2010
Ming W. Lau, et al., Comparing the fermentation performance of Escherichia coli KO11, Saccharomyces
cerevisiae 424A(LNH-ST) and Zymomonas mobilis AX101 for cellulosic ethanol production,
Biotechnology for Biofuels, 2010
Qianjun Shao, et al., Enzymatic digestibility and ethanol fermentability of AFEX treated starch-rich
lignocellulosics like corn silage and whole corn plant, Biotechnology for Biofuels, 2010
Joonhoon Kim and Jennifer Reed, OptORF: Optimal metabolic and regulatory perturbations for
metabolic engineering of microbial strains, BMC Systems Biology, 2010
Joseph B. Binder, et al., Synthesis of furfural from xylose and xylan, ChemSusChem, 2010
Gábor Horvath, et al., Reducing the maladaptive attractiveness of solar panels to polarotactic insects,
Conservation Biology, 2010
T. Randall Fortenbery and Timothy J. Donohue, Opportunities and challenges for next generation
biofuels, Controversies in Science and Technology: From Evolution to Energy, 2010
Xinmei Hao, et al., Earlier-maturing hybrids improve corn grain profitability in the northern Corn Belt,
Crop Management, 2010
J. Lorenz, et al., Genetic analysis of cell wall traits relevant to cellulosic ethanol production in maize (L.),
Crop Science, 2010
J. Lorenz, et al., Breeding maize for a bioeconomy: A literature survey examining harvest index and
stover yield and their relationship to grain yield, Crop Science, 2010
Markus Pauly and Kenneth Keegstra, Plant cell wall polymers as precursors for biofuels, Current
Opinion in Plant Biology, 2010
Blake A. Simmons, et al., Advances in modifying lignin for enhanced biofuel production, Current
Opinion in Plant Biology, 2010
Virginia H. Dale, et al., Bioenergy sustainability at the regional scale, Ecology and Society, 2010
Joseph B. Binder, et al., Mechanistic insights on the conversion of sugars into 5-hydroxymethylfurfural,
Energy and Environmental Science, 2010
Andrew S. Kaufman, et al., Applying life-cycle assessment to low carbon fuel standards: How allocation
choices influence carbon intensity for renewable transportation fuels, Energy Policy, 2010
S. Adams, et al., Geographic variation in bacterial communities associated with the red turpentine
beetle (Coleoptera: Curculionidae), Environmental Entomology, 2010
136.
137.
138.
139.
140.
141.
142.
143.
144.
145.
146.
147.
148.
149.
150.
151.
152.
153.
154.
155.
156.
157.
158.
Xuesong Zhang and Raghavan Srinivasan, GIS-based spatial precipitation estimation using next
generation radar and raingauge data, Environmental Modelling & Software, 2010
Bruce E. Dale, et al., Biofuels done right: land efficient animal feeds enable large environmental and
energy benefits, Environmental Science & Technology, 2010
Ilya Gelfand, et al., Energy efficiency of conventional, organic, and alternative cropping systems for
food and fuel at a site in the U.S. midwest, Environmental Science & Technology, 2010
Jeffrey A. Lewis, et al., Exploiting natural variation in Saccharomyces cerevisiae to identify genes for
increased ethanol resistance, Genetics, 2010
Dritan Liko, et al., Stb3 plays a role in the glucose-induced transition from quiescence to growth in
Saccharomyces cerevisiae, Genetics, 2010
X. Zhang, et al., An integrative modeling framework to evaluate the productivity and sustainability of
biofuel crop production systems, Global Change Biology – Bioenergy, 2010
David Martin Alonso, et al., Production of liquid hydrocarbon transportation fuels by oligomerization of
biomass-derived C9 alkenes, Green Chemistry, 2010
Elif I. Gürbüz, et al., Dual-bed catalyst system for C–C coupling of biomass-derived oxygenated
hydrocarbons to fuel-grade compounds, Green Chemistry, 2010
Douglas A. Landis and Benjamin P. Werling, Arthropods and biofuel production systems in North
America, Insect Science, 2010
G.Philip Robertson, et al., Growing plants for fuel: Predicting effects on water, soil, and the
atmosphere, Issues in Ecology, 2010
Aiping Zhang, et al., Isolation and Characterization of Lignins from Eucalyptus tereticornis (12ABL),
Journal of Agriculture and Food Chemistry, 2010
Claire McSwiney, Greenhouse gas emissions calculator for grain and biofuel farming systems, Journal of
Natural Resources and Life Sciences Education, 2010
Cliff E. Foster, et al., Comprehensive compositional analysis of plant cell walls (Lignocellulosic biomass)
part I: Lignin, Journal of Visualized Experiments, 2010
Cliff E. Foster, et al., Comprehensive compositional analysis of plant cell walls (Lignocellulosic biomass)
part II: Carbohydrates, Journal of Visualized Experiments, 2010
John Ralph and Larry L. Landucci, NMR of lignins, Lignin and Lignans, et al., Advances in Chemistry,
2010
Ana P. Alonso, et al., Understanding fatty acid synthesis in developing maize embryos using metabolic
flux analysis, Metabolic engineering, 2010
David M. Rancour, et al., Protein antigen expression in Escherichia coli for antibody production,
Methods in Molecular Biology, 2010
Nevilel Millar, et al., Nitrogen fertilizer management for nitrous oxide (N2O) mitigation in intensive
corn (maize) production: An emissions reduction protocol for US midwest agriculture, Mitigation and
Adaptation Strategies for Global Change , 2010
Vogel JP, et al., Genome sequencing and analysis of the model grass Brachypodium distachyon,
Nature, 2010
Hoon Kim and John Ralph, Solution-state 2D NMR of ball-milled plant cell wall gels in DMSOd6/pyridine-d5, Organic & Biomolecular Chemistry, 2010
John Ralph, Hydroxycinnamates in lignification, Phytochemistry Reviews, 2010
Jing-Ke Weng, et al., Convergent evolution of syringyl lignin biosynthesis via distinct pathways in the
lycophyte Selaginella and flowering plants, Plant Cell, 2010
Ana P. Alonso, et al., Quantifying the labeling and the levels of plant cell wall precursors using ion
chromatography tandem mass spectrometry, Plant Physiology, 2010
159.
160.
161.
162.
163.
164.
165.
166.
167.
168.
169.
170.
171.
172.
173.
174.
175.
176.
177.
178.
179.
180.
181.
Kenneth Keegstra, Plant cell walls, Plant Physiology, 2010
Fachuang Lu, et al., Sequencing around 5-hydroxyconiferyl alcohol-derived units in caffeic acid Omethyltransferase-deficient poplar lignins, Plant Physiology, 2010
Kris Morreel, et al., Mass spectrometry-based sequencing of lignin oligomers, Plant Physiology, 2010
Frederik R.D. van Parijs, et al., Modeling lignin polymerization. I. simulation model of dehydrogenation
polymers, Plant Physiology, 2010
Ruben Vanholme, et al., Lignin biosynthesis and structure, Plant Physiology, 2010
Joseph B. Binder and Ronald T. Raines, Fermentable sugars by chemical hydrolysis of biomass,
Proceedings of the National Academy of Sciences U.S.A., 2010
Timothy P. Durrett, et al., A distinct DGAT with sn-3 acetyltransferase activity that synthesizes unusual,
reduced-viscosity oils in Euonymus and transgenic seeds, Proceedings of the National Academy of
Sciences U.S.A., 2010
Timothy D. Meehan, et al., Bird communities in future bioenergy landscapes of the Upper Midwest,
Proceedings of the National Academy of Sciences U.S.A., 2010
D Barua, et al., An automated phenotype-driven approach (GeneForce) for refining metabolic and
regulatory models, Public Library of Science Computational Biology, 2010
Garret Suen, et al., An insect herbivore microbiome with high plant biomass-degrading capacity, Public
Library of Science Genetics, 2010
Jarrod J Scott, et al., Microbial community structure of leaf-cutter ant fungus gardens and refuse
dumps, Public Library of Science ONE, 2010
Gregory M. Gauthier, et al., SREB, a GATA transcription factor that directs disparate fates in
Blastomyces dermatitidis including morphogenesis and siderophore biosynthesis, Public Library of
Science Pathogens, 2010
Andrew R. Jakubowski, et al., The benefits of harvesting wetland invaders for cellulosic biofuel: an
ecosystem services perspective, Restoration Ecology, 2010
Jesse Q. Bond, et al., Integrated catalytic conversion of γ-valerolactone to liquid alkenes for
transportation fuels, Science, 2010
Chao Liang and Teri C. Balser, Mass spectrometric characterization of amino sugar aldononitrile
acetate derivatives used for isotope enrichment assessment of microbial residues, Soil Biology and
Biochemistry, 2010
Aklesso Egbendewe-Mondzozo, et al., Biomass supply from alternative cellulosic crops and crop
residues: a preliminary spatial bioeconomic modeling approach, Staff Paper No. 2010-07, 2010
Garret Suen, et al., From genetics to genomics, The lure of bacterial genetics: a tribute to John Roth,
2010
Laura M Vaughn, et al., The cytoskeleton and root growth behavior, The Plant Cytoskeleton. Advances
in Plant Biology 2, 2010
Jonathan Davis, et al., Arabidopsis mannan synthase CSLA9 and glucan synthase CSLC4 have opposite
orientations in the Golgi membrane, The Plant Journal, 2010
Ruben Vanholme, et al., Engineering traditional monolignols out of lignin by concomitant up-regulation
of F5H1 and down-regulation of COMT in Arabidopsis, The Plant Journal, 2010
Sara Krauskopf, A life-cycle assessment of biofuels: tracing energy and carbon through a fuelproduction system, The Science Teacher, 2010
Raghavan Srinivasan, et al., SWAT ungauged: Hydrological budget and crop yield predictions in the
Upper Mississippi River Basin, Transactions of the ASABE , 2010
Ben P. Werling, et al., 2009 Landownder Report: Plants, birds, and insects in three potential biofuel
crops, , 2010
182.
183.
184.
185.
186.
187.
188.
189.
190.
191.
192.
193.
194.
195.
196.
197.
198.
199.
200.
201.
202.
M. Bianchetti, et al., Structure of cellobiose phosphorylase from Clostridium thermocellum in complex
with phosphate, Acta Crystallographica. Section F, Structural biology and crystallization
communications, 2011
Chao Liang, et al., Potential legacy effects of biofuel cropping systems on soil microbial communities in
southern Wisconsin, Agricultural Sciences, 2011
K. Bhardwaj, et al., Ecological management of intensively cropped agro-ecosystems improves soil
quality with sustained productivity, Agriculture, Ecosystems and Environment, 2011
Cynthia Kallenbach and Stuart Grandy, Controls over soil microbial biomass responses to carbon
amendments in agricultural systems: A meta-analysis, Agriculture, Ecosystems, and Environment, 2011
Juan Gao, et al., Corn harvest strategies for combined starch and cellulosic bioprocessing to ethanol,
Agronomy Journal, 2011
Feng Song, et al., Switching to perennial energy crops under uncertainty and costly reversibility,
American Journal of Agricultural Economics, 2011
Kaifeng Hu, et al., Measurement of absolute concentrations of individual compounds in metabolite
mixtures by gradient-selective time-zero 1H-13C HSQC with two concentration references and fast
maximum likelihood reconstruction analysis, Anal Chem, 2011
Roger A. Chylla, et al., Deconvolution of two-dimensional NMR spectra by fast maximum likelihood
reconstruction: application to quantitative metabolomics, Analytical Chemistry, 2011
Shishir P. S. Chundawat, et al., Deconstruction of lignocellulosic biomass to fuels and chemicals, Annual
Review of Chemical and Biomolecular Engineering, 2011
Adam C Fisher, et al., Production of secretory and extracellular N-linked glycoproteins in Escherichia
coli, Applied and Environmental Microbiology, 2011
Wayne S. Kontur, et al., Pathways involved in reductant distribution during photobiological H2
production by Rhodobacter sphaeroides, Applied and Environmental Microbiology, 2011
Rebecca M. Lennen, et al., Membrane stresses induced by overproduction of free fatty acids in
Escherichia coli, Applied and Environmental Microbiology, 2011
Daniel Mendez-Perez, et al., Modular synthase-encoding gene involved in α-olefin biosynthesis in
Synechococcus sp. strain PCC 7002, Applied and Environmental Microbiology, 2011
Allison Riederer, et al., Global gene expression patterns in Clostridium thermocellum from microarray
analysis of chemostat culture on cellulose or cellobiose, Applied and Environmental Microbiology, 2011
Amber Vanden Wymelenberg, et al., Significant alteration of gene expression in wood decay fungi
Postia placenta and Phanerochaete chrysosporium by plant species, Applied and Environmental
Microbiology, 2011
Phillip Brumm, et al., Mining dictyoglomus turgidum for enzymatically active carbohydrases, Applied
Biochemistry and Biotechnology, 2011
Phillip Brumm, et al., Functional annotation of Fibrobacter succinogenes S85 carbohydrate active
enzymes, Applied Biochemistry and Biotechnology, 2011
Kanlaya J. Barr, et al., Agricultural land elasticities in the United States and Brazil, Applied Economic
Perspectives and Policy, 2011
Spense W. Hoover, et al., Bacterial production of free fatty acids from freshwater macroalgal cellulose,
Applied Microbiology and Biotechnology, 2011
Bryan Bals, et al., Low temperature and long residence time AFEX pretreatment of corn stover,
BioEnergy Research, 2011
Rebecca J. Garlock, et al., AFEX pretreatment and enzymatic conversion of black locust (Robinia
pseudoacacia L.) to soluble sugars, BioEnergy Research, 2011
203.
204.
205.
206.
207.
208.
209.
210.
211.
212.
213.
214.
215.
216.
217.
218.
219.
220.
221.
222.
223.
Pragnya Eranki, et al., Advanced regional biomass processing depots: a key to the logistical challenges
of the cellulosic biofuel industry, Biofuels, Bioproducts & Biorefining, 2011
Ben P. Werling, et al., Influence of habitat and landscape perenniality on insect natural enemies in three
candidate biofuel crops, Biological Control, 2011
Yuki Tobimatsu, et al., Fluorescence-tagged monolignols: synthesis, and application to studying In vitro
lignification, Biomacromolecules, 2011
Aklesso Egbendewe-Mondzozo, et al., Biomass supply from alternative cellulosic crops and crop
residues: A spatially explicit bioeconomic modeling approach, Biomass and BioEnergy, 2011
Seungdo Kim and Bruce E. Dale, Indirect land use change for biofuels: Testing predictions and
improving analytical methodologies, Biomass and Bioenergy, 2011
Jessica R. Miesel, et al., Effectiveness of weed management methods in establishment of switchgrass
and a native species mixture for biofuels in Wisconsin, Biomass and BioEnergy, 2011
Paligwende Nikièma, et al., Nitrogen fertilization of switchgrass increases biomass yield and improves
net greenhouse gas balance in northern Michigan, U.S.A, Biomass and BioEnergy, 2011
Bryan Bals, et al., Evaluating the impact of ammonia fiber expansion (AFEX) pretreatment conditions
on the cost of ethanol production, Bioresource Technology, 2011
Chenlin Li, et al., Influence of physico-chemical changes on enzymatic digestibility of ionic liquid and
AFEX pretreated corn stover, Bioresource Technology, 2011
Xiongjun Shao, et al., Conversion for Avicel and AFEX pretreated corn stover by Clostridium
thermocellum and simultaneous saccharification and fermentation: Insights into microbial conversion
of pretreated cellulosic biomass, Bioresource Technology, 2011
Bryan Bals and Bruce E. Dale, Economic comparison of multiple techniques for recovering leaf protein
in biomass processing, Biotechnology and Bioengineering, 2011
Dahai Gao, et al., Binding characteristics of Trichoderma reesei cellulases on untreated, ammonia fiber
expansion (AFEX), and dilute-acid pretreated lignocellulosic biomass, Biotechnology and
Bioengineering, 2011
Mingjie Jin, et al., Consolidated bioprocessing (CBP) performance of Clostridium phytofermentans on
AFEX-treated corn stover for ethanol production, Biotechnology and Bioengineering, 2011
Jinmei Xia, et al., Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental
strain in different media reveals correlations between membrane lipids and fermentation capacity,
Biotechnology and Bioengineering, 2011
J. Tyler Youngquist, et al., Kinetic modeling of free fatty acid production in Escherichia coli based on
continuous cultivation of a plasmid free strain, Biotechnology and Bioengineering, 2011
Goutami Banerjee, et al., Alkaline peroxide pretreatment of corn stover: Effects of biomass, peroxide,
and enzyme loading and composition on yields of glucose and xylose, Biotechnology for Biofuels, 2011
Dahai Gao, et al., Nirmal Uppaguntala, et al., Hemicellulases and auxiliary enzymes for improved
conversion of lignocellulosic biomass to monosaccharides, Biotechnology for Biofuels, 2011
Luen-Luen Li, et al., Bioprospecting metagenomics of decaying wood: mining for new glycoside
hydrolases, Biotechnology for Biofuels, 2011
Jeffrey G. Gardner, et al., A high-throughput solid phase screening method for identification of
lignocellulose-degrading bacteria from environmental isolates, Biotechnology Letters, 2011
Rebecca Van Acker, et al., Science, society and biosafety of a field trial with transgenic biofuel poplars,
BMC Proceedings, 2011
Saheed Imam, et al., iRsp1095: A Genome-scale reconstruction of the Rhodobacter sphaeroides
metabolic network, BMC Systems Biology, 2011
224.
225.
226.
227.
228.
229.
230.
231.
232.
233.
234.
235.
236.
237.
238.
239.
240.
241.
242.
243.
244.
245.
Venkatesh Balan, et al., A short review on ammonia based lignocellulosic biomass pretreatment,
Chemical and Biochemical Catalysis for Next Generation Biofuels, 2011
David Martin Alonso, et al., Production of biofuels from cellulose and corn stover using alkylphenol
solvents, ChemSusChem, 2011
Benjamin R. Caes, et al., Ronald T. Raines, Conversion of fructose into 5-(hydroxymethyl)furfural in
sulfolane, ChemSusChem, 2011
Elif I. Gürbüz, et al., Reactive extraction of levulinate esters and conversion to γ-valerolactone for
production of liquid fuels, ChemSusChem, 2011
J. Nichols, et al., HPC-EPIC for high resolution simulations of environmental and sustainability
assessment, Computers and Electronics in Agriculture, 2011
Andrew R. Jakubowski, et al., Genetic diversity and population structure of Eurasian populations of reed
canarygrass: cytotypes, cultivars, and interspecific hybrids, Crop and Pasture Science, 2011
Candice N. Hansey and Natalia de Leon, Biomass yield and cell wall composition of corn with
alternative morphologies planted at variable densities, Crop Science, 2011
Candice N. Hansey, et al., Genetic diversity of a maize association population with restricted
phenology., Crop Science, 2011
Yunwei Zhang, et al., Natural hybrids and gene flow between upland and lowland switchgrass, Crop
Science, 2011
G.Philip Robertson, et al., The biogeochemistry of bioenergy landscapes: Carbon, nitrogen, and water
considerations, Ecological Applications, 2011
Arijit Mukherjee and Jean-Michel Ané, Plant hormones and initiation of legume nodulation and
arbuscular mycorrhization, Ecological Aspects of Nitrogen Metabolism in Plants, 2011
Juan Carlos Serrano-Ruiz, et al., Catalytic routes for the conversion of biomass into liquid hydrocarbon
transportation fuels, Energy & Environmental Science, 2011
Shishir P. S Chundawat, et al., Multi-scale visualization and characterization of plant cell wall
deconstruction during thermochemical pretreatment, Energy and Environmental Science, 2011
Bruce A. Babcock, et al., Opportunity for profitable investments in cellulosic biofuels, Energy Policy,
2011
Scott M. Swinton, et al., Higher US crop prices trigger little area expansion so marginal land for biofuel
crops is limited, Energy Policy, 2011
Daniel J. Yelle, et al., Multidimensional NMR analysis reveals truncated lignin structures in wood
decayed by the brown rot basidiomycete Postia placenta, Environmental Microbiology, 2011
Spencer W. Hoover, et al., Isolation of improved free fatty acid overproducing strains of Escherichia coli
via Nile red based high-throughput screening, Environmental Progress & Sustainable Energy, 2011
Xuesong Zhang, et al., Comment on “Modeling miscanthus in the soil and water assessment tool
(SWAT) to simulate its water quality effects as a bioenergy crop”, Environmental Science &
Technology, 2011
Robert J. Fletcher, et al., Biodiversity conservation in the era of biofuels: risks and opportunities,
Frontiers in Ecology and the Environment, 2011
Yunwei Zhang, et al., Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools
revealed by SSR markers and cpDNA sequences, Genetica, 2011
Juan D. Muñoz, et al., Soil carbon mapping using on-the-go near infrared spectroscopy, topography
and aerial photographs, Geoderma, 2011
K. Bhardwaj, et al., Water and energy footprints of bioenergy crop production on marginal lands, Global
Change Biology – Bioenergy, 2011
246.
247.
248.
249.
250.
251.
252.
253.
254.
255.
256.
257.
258.
259.
260.
261.
262.
263.
264.
265.
Pragnya L. Eranki and Bruce E. Dale, Comparative life cycle assessment of centralized and distributed
biomass processing systems combined with mixed feedstock landscapes, Global Change Biology –
Bioenergy, 2011
Scott D Peckham and Stith T. Gower, Simulated long-term effects of harvest and biomass residue
removal on soil carbon and nitrogen content and productivity for two Upper Great Lakes forest
ecosystems, Global Change Biology – Bioenergy, 2011
Bruce A. Robertson, et al., Perennial biomass feedstocks enhance avian diversity, Global Change
Biology – Bioenergy, 2011
Abbie C. Schrotenboer, et al., Modification of native grasses for biofuel production may increase virus
susceptibility, Global Change Biology – Bioenergy, 2011
Ben P. Werling, et al., Biocontrol potential varies with biofuel-crop plant community and landscape
perenniality, Global Change Biology – Bioenergy, 2011
Terenzio Zenone, et al., CO2 fluxes of transitional bioenergy crops: effect of land conversion during the
first year of cultivation, Global Change Biology – Bioenergy, 2011
Drew J. Braden, et al., Production of liquid hydrocarbon fuels by catalytic conversion of biomassderived levulinic acid, Green Chemistry, 2011
Benjamin R. Caes, et al., Separable fluorous ionic liquids for the dissolution and saccharification of
cellulose, Green Chemistry, 2011
Garret Suen, et al., The microbiome of leaf-cutter ant fungus gardens, Handbook of Molecular
Microbial Ecology, 2011
James R. Cole, et al., The Ribosomal Database Project: Sequences and software for high-throughput
rRNA analysis, Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary
Approaches, 2011
Shoko Iwai, et al., Gene-targeted-metagenomics (GT-metagenomics) to explore the extensive diversity
of genes of interest in microbial communities, Handbook of Molecular Microbial Ecology I:
Metagenomics and Complementary Approaches, 2011
Titus Brown and J. M. Tiedje, Future of metagenomics, metatranscriptomics, metabolomics,
metaproteomics and single cell analysis: A perspective, Handbook of Molecular Microbial Ecology II:
Metagenomics in Different Habitats, 2011
Daniel J. Yelle, et al., Delineating pMDI-model reactions with loblolly pine via solution-state NMR
spectroscopy. Part 1. Catalyzed reactions with wood models and wood polymers., Holzforschung, 2011
Daniel J. Yelle, et al., Delineating pMDI-model reactions with loblolly pine via solution-state NMR
spectroscopy. Part 2. Non-catalyzed reactions with the wood cell wall., Holzforschung, 2011
Timothy Donohue, Great Lakes Bioenergy Research Center, Industrial Biotechnology, 2011
Jonathan L. Klassen, et al., Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a
surface-sterilized garlic bulb, J Bacteriol, 2011
Kirk J. Grubbs, et al., Genome Sequence of Streptomyces griseus Strain XylebKG-1, an Ambrosia
Beetle-Associated Actinomycete, Journal of Bacteriology, 2011
Jinjie Liu and C. Peter Wolk, Mutations in genes patA and patL of Anabaena sp strain PCC 7120 result in
similar phenotypes, and the proteins encoded by those genes may interact, Journal of Bacteriology,
2011
David A. Miller, et al., Complete genome sequence of the cellulose-degrading bacterium
Cellulosilyticum lentocellum, Journal of Bacteriology, 2011
Garret Suen, et al., Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7,
Journal of Bacteriology, 2011
266.
267.
268.
269.
270.
271.
272.
273.
274.
275.
276.
277.
278.
279.
280.
281.
282.
283.
284.
285.
286.
Fachuang Lu and John Ralph, Solution-state NMR of lignocellulosic biomass, Journal of Biobased
Materials and Bioenergy, 2011
Kent D. Chapman and John B. Ohlrogge, Compartmentation of triacylglycerol accumulation in plants,
Journal of Biological Chemistry, 2011
Kaifeng Hu, et al., Two-dimensional concurrent HMQC-COSY as an approach for small molecule
chemical shift assignment and compound identification, Journal of Biomolecular NMR, 2011
Jun Chen, et al., Arabidopsis RHD3 mediates the generation of the tubular ER network and is required
for Golgi distribution and motility in plant cells, Journal of Cell Science, 2011
James F. Humpula, et al., Rapid quantification of major reaction products formed during
thermochemical pretreatment of lignocellulosic biomass using GC-MS , Journal of Chromatography B,
2011
Sean E. Weise, et al., The role of transitory starch in C3, CAM, and C4 metabolism and opportunities for
engineering leaf starch accumulation, Journal of Experimental Botany, 2011
Xuesong Zhang, et al., Explicitly integrating parameter, input and structure uncertainties into Bayesian
neural networks for probabilistic hydrologic forecasting, Journal of Hydrology, 2011
Michael J. Donath, 2nd, et al., Development of an automated platform for high-throughput P1-phage
transduction of Escherichia coli, Journal of laboratory automation, 2011
Phillip J. Brumm, et al., Identification, cloning and characterization of Dictyoglomus turgidum CelA, an
endoglucanase with cellulase and mannanase activity, Journal of Life Sciences, 2011
Chao Liang, et al., Investigation of the molecular ion structure for aldononitrile acetate derivatized
muramic acid, Journal of Microbiological Methods, 2011
R. Parthasarathi, et al., Insights into hydrogen bonding and stacking interactions in cellulose, Journal of
Physical Chemistry A, 2011
Shishir P. S. Chundawat, et al., Proteomics-based compositional analysis of complex cellulase–
hemicellulase mixtures, Journal of Proteome Research, 2011
Shishir P. S. Chundawat, et al., Restructuring the crystalline cellulose hydrogen bond network enhances
its depolymerization rate, Journal of the American Chemical Society, 2011
Kaifeng Hu, et al., Simultaneous quantification and identification of individual chemicals in metabolite
mixtures by two-dimensional extrapolated time-zero 1H-13C HSQC (HSQC0), Journal of the American
Chemical Society, 2011
Jonathan Walton, et al., GENPLAT: an automated platform for biomass enzyme discovery and cocktail
optimization, Journal of Visualized Experiments, 2011
Mindy L. Mallory, et al., Crop-based biofuel production with acreage competition and uncertainty, Land
Economics, 2011
Ana P. Alonso, et al., Central metabolic fluxes in the endosperm of developing maize seeds and their
implications for metabolic engineering, Metabolic Engineering, 2011
Xuewen Chen, et al., Synergy between 13C-metabolic flux analysis and flux balance analysis for
understanding metabolic adaption to anaerobiosis in E. coli, Metabolic Engineering, 2011
Juri Hulcr, et al., Presence and diversity of Streptomyces in Dendroctonus and sympatric bark beetle
galleries across North America, Microbial Ecology, 2011
Michael A. Held, et al., CGR3: A golgi-localized protein influencing homogalacturonan
methylesterification, Molecular Plant, 2011
Arijit Mukherjee and Jean-Michel Ané, Germinating spore exudates from arbuscular mycorrhizal fungi:
molecular and developmental responses in plants and their regulation by ethylene, Molecular PlantMicrobe Interactions, 2011
287.
288.
289.
290.
291.
292.
293.
294.
295.
296.
297.
298.
299.
300.
301.
302.
303.
304.
305.
306.
307.
308.
Miaoying Tian, et al., 454 Genome Sequencing of Pseudoperonospora cubensis reveals effector
proteins with a QXLR translocation motif, Molecular Plant-Microbe Interactions, 2011
Eman K. Al-Dous, et al., De novo genome sequencing and comparative genomics of date palm (Phoenix
dactylifera), Nature Biotechnology, 2011
Chao Liang and Teri C. Balser, Microbial production of recalcitrant organic matter in global soils:
Implications for productivity and climate policy., Nature Reviews Microbiology, 2011
Chonggang Xu, et al., Importance of feedback loops between soil inorganic nitrogen and microbial
communities in the heterotrophic soil respiration response to global warming, Nature Reviews
Microbiology, 2011
Kurt Smemo, et al., Improving process-based estimates of N2O emissions from soil using temporally
extensive chamber techniques and stable isotopes, Nutrient Cycling in Agroecosystems, 2011
Ali Azarpira, et al., Reactions of dehydrodiferulates with ammonia, Organic & Biomolecular Chemistry,
2011
Sanjaya, et al., Increasing the energy density of vegetative tissues by diverting carbon from starch to oil
biosynthesis in transgenic Arabidopsis, Plant Biotechnology Journal, 2011
Jae-Heung Ko, et al., Biotechnological improvement of lignocellulosic feedstock for enhanced biofuel
productivity and processing, Plant Biotechnology Reports, 2011
Sascha Gille, et al., O-Acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L,
proteins with a TBL and DUF231 domain, Plant Cell, 2011
Jing-Ke Weng, et al., Independent recruitment of an O-methyltransferase for syringyl lignin
biosynthesis in Selaginella moellendorffii, Plant Cell, 2011
Jelena Brkljacic, et al., Brachypodium as a model for the grasses: Today and the future, Plant
Physiology, 2011
Jorge Rencoret, et al., Lignin composition and structure in young versus adult Eucalyptus globulus
plants, Plant Physiology, 2011
Marina Varbanova, et al., Brad Day, Molecular and biochemical basis for stress-induced accumulation of
free and bound p-coumaraldehyde in Cucumis sativus, Plant Physiology, 2011
Fabienne Bourgis, et al., Comparative transcriptome and metabolite analysis of oil palm and date palm
mesocarp that differ dramatically in carbon partitioning, Proceedings of the National Academy of
Sciences U.S.A., 2011
Ilya Gelfand, et al., Carbon debt of Conservation Reserve Program (CRP) grasslands converted to
bioenergy production, Proceedings of the National Academy of Sciences U.S.A., 2011
Eliana Gonzales-Vigil, et al., Adaptive evolution of threonine deaminase in plant defense against insect
herbivores, Proceedings of the National Academy of Sciences U.S.A., 2011
Timothy D. Meehan, et al., Agricultural landscape simplification and insecticide use in the Midwestern
United States, Proceedings of the National Academy of Sciences U.S.A., 2011
Christopher D. Smith, et al., Draft genome of the globally widespread and invasive Argentine ant
(Linepithema humile), Proceedings of the National Academy of Sciences U.S.A., 2011
Chris R. Smith, et al., Draft genome of the red harvester ant Pogonomyrmex barbatus, Proceedings of
the National Academy of Sciences U.S.A., 2011
Woo Jun Sul, et al., Bacterial community comparisons by taxonomy-supervised analysis independent of
sequence alignment and clustering, Proceedings of the National Academy of Sciences U.S.A., 2011
Dana J. Wohlbach, et al., Comparative genomics of xylose-fermenting fungi for enhanced biofuel
production, Proceedings of the National Academy of Sciences U.S.A., 2011
Xiaolei Zhu and Julie C. Mitchell, KFC2: a knowledge-based hot spot prediction method based on
interface solvation, atomic density, and plasticity features, Proteins, 2011
309.
310.
311.
312.
313.
314.
315.
316.
317.
318.
319.
320.
321.
322.
323.
324.
325.
326.
327.
328.
329.
330.
331.
Andrew R. Jakubowski, et al., Has selection for improved agronomic traits made reed canarygrass
invasive?, Public Libary of Science ONE, 2011
Garret, et al., The genome sequence of the leaf-cutter ant atta cephalotes reveals insights into its
obligate symbiotic lifestyle, Public Library of Science Genetics, 2011
Joonhoon Kim, et al., Large-scale bi-level strain design approaches and mixed-integer programming
solution techniques, Public Library of Science ONE, 2011
Bruce A. Robertson, et al., Avian use of perennial biomass feedstocks as post-breeding and migratory
stopover habitat, Public Library of Science ONE, 2011
Garret Suen, et al., The complete genome sequence of Fibrobacter succinogenes S85 reveals a
cellulolytic and metabolic specialist, Public Library of Science ONE, 2011
Elif I. Gürbüz, et al., Dumesic, Aqueous phase catalytic processing in biomass valorization to H2 and
liquid fuels, Renewable Resources and Renewal Energy: A Global Challenge, 2011
Scott Hull, et al., Wisconsin sustainable planting and harvest guidelines for nonforest biomass, Report
to the Wiscinsin Bioenergy Council, 2011
Kamlesh Jangid, et al., Land-use history has a stronger impact on soil microbial community
composition than aboveground vegetation and soil properties, Soil Biology and Biochemistry, 2011
Bruno Basso, et al., Procedures for initializing soil organic carbon pools in the DSSAT-CENTURY Model
for agricultural systems, Soil Science Society of America Journal, 2011
N. Kravchenko and G. Phillip Robertson, Whole-profile soil carbon stocks: The danger of assuming too
much from analyses of too little, Soil Science Society of America Journal, 2011
Aklesso Egbendewe-Mondzozo, et al., Can dispersed biomass processing protect the environment and
cover the bottom line for biofuel?, Staff Paper 2011-15, 2011
Yimin Zhu and John Ralph, Stereoselective synthesis of 1-O-β-feruloyl and 1-O-β-sinapoyl
glucopyranoses, Tetrahedron Letters, 2011
John B. Ohlrogge and Kent Chapman, The seeds of green energy - expanding the contribution of plant
oils as biofuels, The Biochemist, 2011
Aaron S. Adams, et al., Cellulose-degrading bacteria associated with the invasive woodwasp Sirex
noctilio, The International Society for Microbial Ecology Journal, 2011
Uri Y. Levine, et al., Agriculture’s impact on microbial diversity and associated fluxes of carbon dioxide
and methane, The International Society for Microbial Ecology Journal, 2011
Adam J. Cornish, et al., Mechanism of proton transfer in [FeFe]-hydrogenase from Clostridium
pasteurianum, The Journal of Biological Chemistry, 2011
John S. Scott-Craig, et al., Biochemical and molecular characterization of secreted α-xylosidase from
Aspergillus niger, The Journal of Biological Chemistry, 2011
Giovanni Bellesia, et al., Probing the early events associated with liquid ammonia pretreatment of
native crystalline cellulose, The Journal of Physical Chemistry B, 2011
R.M. Davidson, et al., Utility of RNA sequencing for analysis of maize reproductive transcriptomes, The
Plant Genome, 2011
Michael D. Casler, et al., The switchgrass genome: Tools and strategies, The Plant Genome Journal,
2011
Jacob Krüger Jensen, et al., The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan
synthesis in Arabidopsis, The Plant Journal, 2011
Rajandeep S. Sekhon, et al., Genome-wide atlas of transcription during maize development, The Plant
Journal, 2011
Iben Sørensen, et al., The Charophycean green algae provide insights into the early origins of plant cell
walls, The Plant Journal, 2011
332.
333.
334.
335.
336.
337.
338.
339.
340.
341.
342.
343.
344.
345.
346.
347.
348.
349.
350.
351.
352.
353.
Manuel Troncoso-Ponce, et al., Comparative deep transcriptional profiling of four developing oilseeds,
The Plant Journal, 2011
Armin Wagner, et al., CCoAOMT suppression modifies lignin composition in Pinus radiata, The Plant
Journal, 2011
J. E. Zalapa, et al., Hierarchical classification of switchgrass genotypes using SSR and chloroplast
sequences: ecotypes, ploidies, gene pools, and cultivars, Theoretical and Applied Genetics, 2011
Julie C. Mitchell, et al., Combined computational and experimental approaches to sequence-based
design of protein thermal stability, Thermostable Proteins: Structural Stability and Design, 2011
Jae-Heung Ko, et al., Novel aspects of transcriptional regulation in the winter survival and maintenance
mechanism of poplar, Tree Physiology, 2011
Carolyn M. Malmstrom, et al., The expanding field of plant virus ecology: Historical foundations,
knowledge gaps, and research directions, Virus Research, 2011
Seth Meyer, et al., New challenges in agricultural modeling: relating energy and farm commodity
prices, , 2011
Wyatt Thompson, et al., Model documentation for biomass, cellulosic biofuels, renewable and
conventional electricity, natural gas and coal markets, , 2011
Armin Wagner, et al., Lignification and lignin manipulations in conifers, Advances in Botanical
Research: Lignins, 2012
Yann S. Dufour and Timothy J. Donohue, Signal correlations in ecological niches can shape the
organization and evolution of bacterial gene regulatory networks, Advances in Microbial Physiology,
2012
Gregory R. Sanford, et al., Soil carbon lost from mollisols of the North Central U.S.A. with 20 years of
agricultural best management practices, Agriculture, Ecosystems & Environment, 2012
S.P. Syswerda, et al., Long-term nitrate loss along an agricultural intensity gradient in the Upper
Midwest USA, Agriculture, Ecosystems & Environment, 2012
Hajime Masukawa, et al., Genetic engineering of cyanobacteria to enhance biohydrogen production
from sunlight and water, Ambio, 2012
Matthew J. Grieshop, et al., Big brother is watching: Studying insect predation in the age of digital
surveillance, American Entomologist, 2012
Ruiqing Miao, et al., Investment in cellulosic biofuel refineries: Do waivable biofuel mandates matter?,
American Journal of Agricultural Economics, 2012
Timothy D. Meehan, Energetics of thermoregulation by an industrious endotherm, American Journal of
Human Biology, 2012
James J. Ellinger, et al., Semiautomated device for batch extraction of metabolites from tissue samples,
Anal Chem, 2012
Katrin Gärtner, et al., Expression of Shewanella oneidensis MR-1 [FeFe]-hydrogenase genes in
Anabaena sp. strain PCC 7120 , Applied and Environmental Microbiology, 2012
Tanya M. Long, et al., Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast,
Spathaspora passalidarum, Applied and Environmental Microbiology, 2012
Michael S. Schwalbach, et al., Complex physiology and compound stress responses during
fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen, Applied
and Environmental Microbiology, 2012
Kai Xue, et al., Functional gene differences in soil microbial communities from conventional, low-input
and organic farmlands, Applied and Environmental Microbiology, 2012
Stephanie G. Wettstein, et al., RuSn bimetallic catalysts for selective hydrogenation of levulinic acid to
γ-valerolactone, Applied Catalysis B: Environmental, 2012
354.
355.
356.
357.
358.
359.
360.
361.
362.
363.
364.
365.
366.
367.
368.
369.
370.
371.
372.
373.
374.
375.
Rembrandt Haft, et al., Quantitative colorimetric measurement of cellulose degradation under
microbial culture conditions, Applied Microbiology and Biotechnology, 2012
Chao Liang, et al., Soil microbial communities under model biofuel cropping systems in southern
Wisconsin, USA: Impact of crop species and soil properties, Applied Soil Ecology, 2012
Adina Chuang Howe, et al., Illumina sequencing artifacts revealed by connectivity analysis of
metagenomic datasets, arXiv, 2012
Titus Brown, et al., A reference-free algorithm for computational normalization of shotgun sequencing
data, arXiv preprint, 2012
Douglas A. Landis, et al., Using Native Plant Species to Diversify Agriculture, Biodiversity and Insect
Pests: Key Issues for Sustainable Management, 2012
John Ralph, et al., Effects on lignin structure of coumarate 3-hydroxylase downregulation in Poplar,
BioEnergy Research, 2012
Bruce Robertson, et al., Agroenergy crops influence the diversity, biomass, and guild structure of
terrestrial arthropod communities, BioEnergy Research, 2012
Bruce A. Robertson, et al., Perennial agroenergy feedstocks as en route habitat for spring migratory
birds, BioEnergy Research, 2012
Yimin Zhu, et al., Facile synthesis of 4-hydroxycinnamaldehydes, BioEnergy Research, 2012
Surat M. Sen, et al., Conversion of biomass to sugars via ionic liquid hydrolysis: Process synthesis and
economic evaluation, Biofuels, Bioproducts & Biorefining, 2012
G Philip Robertson, et al., Nitrogen-climate interactions in US agriculture, Biogeochemistry, 2012
Teja Tscharntke, et al., Landscape moderation of biodiversity patterns and processes - eight
hypotheses, Biological Reviews, 2012
Rebecca J. Garlock, et al., Influence of variable species composition on the saccharification of AFEX"
pretreated biomass from unmanaged fields in comparison to corn stover, Biomass and BioEnergy, 2012
Seungdo Kim, et al., An alternative approach to indirect land use change: Allocating greenhouse gas
effects among different uses of land, Biomass and BioEnergy, 2012
Paligwende Nikièma, et al., Initial greenhouse gas emissions and nitrogen leaching losses associated
with converting pastureland to short-rotation woody bioenergy crops in northern Michigan, USA,
Biomass and Bioenergy, 2012
Brian D. Bals and Bruce E. Dale, Developing a model for assessing biomass processing technologies
within a local biomass processing depot, Bioresource technology, 2012
Minjie Jin, et al., Quantitatively understanding reduced xylose fermentation performance in AFEXTM
treated corn stover hydrolysate using Saccharomyces cerevisiae 424A (LNH-ST) and Escherichia coli
KO11, Bioresource Technology, 2012
Mingjie Jin, et al., Simultaneous saccharification and co-fermentation (SSCF) of AFEXTM pretreated
corn stover using commercial enzymes and Saccharomyces cerevisiae 424A(LNH-ST), Bioresource
Technology, 2012
Rebecca J. Garlock, et al., Optimization of AFEXTM pretreatment conditions and enzyme mixtures to
maximize sugar release from upland and lowland switchgrass, Bioresoure Technology, 2012
Alan K. Knapp, et al., Past, present, and future roles of long-term experiments in the LTER network,
Bioscience, 2012
Xinmei Hao, et al., Prediction of the ethanol yield of dry-grind maize grain using near infrared
spectroscopy, Biosystems Engineering, 2012
Muyang Li, et al., Structural characterization of alkaline hydrogen peroxide pretreated grasses
exhibiting diverse lignin phenotypes, Biotechnology for Biofuels, 2012
376.
377.
378.
379.
380.
381.
382.
383.
384.
385.
386.
387.
388.
389.
390.
391.
392.
393.
394.
395.
396.
397.
Goutami Banerjee, et al., Scale-up and integration of alkaline hydrogen peroxide pretreatment,
enzymatic hydrolysis, and ethanolic fermentation., Biotechnology and Bioengineering, 2012
Mingjie Jin, et al., Consolidated bioprocessing (CBP) of AFEX™-pretreated corn stover for ethanol
production using Clostridium phytofermentans at a high solids loading, Biotechnology and
Bioengineering, 2012
Mingjie Jin, et al., Continuous SSCF of AFEX™ pretreated corn stover for enhanced ethanol productivity
using commercial enzymes and Saccharomyces cerevisiae 424A (LNH-ST), Biotechnology and
Bioengineering, 2012
Sasikumar Elumalai, et al., Epigallocatechin gallate incorporation into lignin enhances the alkaline
delignification and enzymatic saccharification of cell walls, Biotechnology for Biofuels, 2012
German Muttoni, et al., A high-throughput core sampling device for the evaluation of maize stalk
composition, Biotechnology for Biofuels, 2012
Bruce E Dale and Rebecca G Ong, Energy, wealth, and human development: Why and how biomass
pretreatment research must improve, Biotechnology Progress, 2012
C Hart Poskar, et al., iMS2Flux - a high-throughput processing tool for stable isotope labeled mass
spectrometric data used for metabolic flux analysis, BMC bioinformatics, 2012
Jeff R. Broadbent, et al., Analysis of the Lactobacillus casei supragenome and its influence in species
evolution and lifestyle adaptation, BMC genomics, 2012
Maree Brennan, et al., Cellulose microfibril angles and cell-wall polymers in different wood types of
Pinus radiata, Cellulose, 2012
Mark C. Politz, et al., Artificial repressors for controlling gene expression in bacteria, Chemical
Communications, 2012
Murat S. Sen, et al., Catalytic conversion of lignocellulosic biomass to fuels: Process development and
technoeconomic evaluation, Chemical Engineering Science, 2012
David Martin Alonso, et al., Bimetallic catalysts for upgrading of biomass to fuels and chemicals,
Chemical Society Reviews, 2012
Fengxia Yue, et al., Synthesis and characterization of new 5-linked pinoresinol lignin models,
Chemistry, A European Journal, 2012
Elif I. Gürbüz, et al., Conversion of hemicellulose to furfural and levulinic acid using biphasic reactors
with alkylphenol solvents, ChemSusChem, 2012
Yuki Tobimatsu, et al., Hydroxycinnamate conjugates as potential monolignol replacements: In vitro
lignification and cell wall studies with rosmarinic acid, ChemSusChem, 2012
T S Ream, et al., The molecular basis of vernalization in different plant groups, Cold Spring Harbor
symposia on quantitative biology, 2012
Kurt D. Thelen, et al., A spreadsheet-based model for teaching the agronomic, economic, and
environmental aspects of bioenergy cropping systems, Computers and Electronics in Agriculture, 2012
Wayne S. Kontur, et al., Maximizing reductant flow into microbial H2 production, Current Opinion in
Biotechnology, 2012
Stephanie G. Wettstein, et al., A roadmap for conversion of lignocellulosic biomass to chemicals and
fuels, Current Opinion in Chemical Engineering, 2012
Lorraine S. McLaughlin, et al., Structural insights into the Type II secretion nanomachine, Current
Opinion in Structural Biology, 2012
Zhenglong Li, et al., Aqueous electrocatalytic hydrogenation of furfural using a sacrificial anode,
Electrochimica Acta, 2012
Mingjie Jin, et al., A novel integrated biological process for cellulosic ethanol production featuring high
ethanol productivity, enzyme recycling and yeast cells reuse, Energy & Environmental Science, 2012
398.
399.
400.
401.
402.
403.
404.
405.
406.
407.
408.
409.
410.
411.
412.
413.
414.
415.
416.
417.
418.
419.
Ming W. Lau, et al., An integrated paradigm for cellulosic biorefineries: Utilization of lignocellulosic
biomass as self-sufficient feedstocks for fuel, food precursors and saccharolytic enzyme production,
Energy & Environmental Science, 2012
Stephanie G. Wettstein, et al., Production of levulinic acid and gamma-valerolactone (GVL) from
cellulose using GVL as a solvent in biphasic systems, Energy & Environmental Science, 2012
David M. Alonso, et al., Integrated conversion of hemicellulose and cellulose from lignocellulosic
biomass, Energy and Environmental Science, 2012
Murat Sen, et al., A sulfuric acid management strategy for the production of liquid hydrocarbon fuels
via catalytic conversion of biomass-derived levulinic acid, Energy and Environmental Science, 2012
Benjamin P. Werling, et al., Ecosystem services and bioenergy landscapes, Extension Bulletin, 2012
Kazem Kashefi, Hyperthermophiles: Metabolic Diversity and Biotechnological Applications,
Extremophiles: Microbiology and Biotechnology, 2012
Sang-Jin Kim and Federica Brandizzi, News and views into the SNARE complexity in Arabidopsis,
Frontiers in Plant Cell Biology, 2012
Aaron H. Liepman and David M. Cavalier, The CELLULOSE SYNTHASE-LIKE A and CELLULOSE
SYNTHASE-LIKE C families: recent advances and future perspectives, Frontiers in Plant Science, 2012
Eliel Ruiz-May, et al., The secreted plant N-glycoproteome and associated secretory pathways,
Frontiers in Plant Science, 2012
David A. Rothamer and Jamie H. Jennings, Study of the knocking propensity of 2,5-dimethylfuran–
gasoline and ethanol–gasoline blends, Fuel, 2012
Sujithkumar Surendran Nair, et al., Bioenergy crop models: descriptions, data requirements, and future
challenges, GCB Bioenergy, 2012
Jason M. Peters, et al., Rho and NusG suppress pervasive antisense transcription in Escherichia coli,
Genes and Development, 2012
Jeffrey A. Lewis and Audrey P. Gasch, Natural variation in the yeast glucose-signaling network reveals a
new role for the mig3p transcription factor, Genes Genomes Genetics, 2012
Joonhoon Kim and Jennifer L. Reed, RELATCH: relative optimality in metabolic networks explains
robust metabolic and regulatory responses to perturbations, Genome Biology, 2012
Pooya Azadi, et al., Catalytic conversion of biomass using solvents derived from lignin, Green
Chemistry, 2012
Jean M.R. Gallo, et al., Production and upgrading of 5-hydroxymethylfurfural using heterogeneous
catalysts and biomass-derived solvents, Green Chemistry, 2012
Zhenglong Li, et al., Mild electrocatalytic hydrogenation and hydrodeoxygenation of bio-oil derived
phenolic compounds using ruthenium supported on activated carbon cloth, Green Chemistry, 2012
Murat Sen, et al., Production of butene oligomers a transportation fuels using butene for esterification
of levulinic acid from lignocellulosic biomass: process synthesis and technoeconomic evaluation, Green
Chemistry, 2012
Shishir P. S. Chundawat, et al., Guayule as a feedstock for lignocellulosic biorefineries using ammonia
fiber expansion (AFEX) pretreatment, Industrial Crops and Products, 2012
J.Meghan Woltz, et al., Natural enemies and insect outbreaks in agriculture: A landscape perspective,
Insect Outbreaks, 2012
Frank O. Aylward, et al., The evolutionary innovation of nutritional symbioses in leaf-cutter ants,
Insects, 2012
Aklesso Egbendewe-Mondzozo, et al., Maintaining Environmental Quality while Expanding Energy
Biomass Production: Policy Simulations from Michigan, USA, International Association of Agricultural
Economists (IAAE) Triennial Conference, 2012
420.
421.
422.
423.
424.
425.
426.
427.
428.
429.
430.
431.
432.
433.
434.
435.
436.
437.
438.
439.
440.
441.
Shawn Kaeppler, Heterosis: Many genes, many mechanisms-end the search for an undiscovered
unifying theory, ISRN Botany, 2012
José C. del Río, et al., Structural characterization of the lignin in the cortex and pith of elephant grass
(Pennisetum purpureum) stems, Journal of Agricultural and Food Chemistry, 2012
José C. del Rio, et al., Structural characterization of wheat straw lignin as revealed by analytical
pyrolysis, 2D-NMR, and reductive cleavage methods, Journal of Agricultural and Food Chemistry, 2012
Fachuang Lu, et al., Rapid syntheses of dehydrodiferulates via biomimetic radical coupling reactions of
ethyl ferulate, Journal of Agricultural and Food Chemistry, 2012
Fengxia Yue, et al., Syntheses of lignin-derived thioacidolysis monomers and their uses as quantitation
standards, Journal of Agriculture and Food Chemistry, 2012
Wane S Kontur, et al., Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome,
Journal of Bacteriology, 2012
Brandon J. O'Neill, et al., Reaction kinetics studies of the conversions of formic acid and butyl formate
over carbon-supported palladium in the liquid phase, Journal of Catalysis, 2012
Xuewen Chen and Yair Shachar-Hill, Insights into metabolic efficiency from flux analysis, Journal of
Experimental Botany, 2012
John O'Grady, et al., Metabolic cartography: experimental quantification of metabolic fluxes from
isotopic labeling studies , Journal of Experimental Botany, 2012
Timothy D. Meehan, et al., Butterfly community structure and landscape composition in agricultural
landscapes of the central United States, Journal of Insect Conservation, 2012
Hui Jin and Charles W. Anderson, A learning progression for energy in socio-ecological systems, Journal
of Research in Science Teaching, 2012
Stephen Ventura, et al., Guidelines for sustainable planting and harvest of nonforest biomass in
Wisconsin, Journal of Soil and Water Conservation, 2012
Chao Liang, et al., GC-based Detection of Aldononitrile Acetate Derivatized Glucosamine and Muramic
Acid for Microbial Residue Determination in Soil, Journal of Visualized Experiments, 2012
Kristin Gunckel, et al., Addressing challenges in developing learning progressions for environmental
science literacy, Learning progressions in science: Current challenges and future directions, 2012
Hui Jin and Charles W Anderson, Developing assessments for a learning progression on carbontransforming processes in socio-ecological systems, Learning progressions in science: Current
challenges and future directions, 2012
R. Cesar Izaurralde, et al., Development and application of the EPIC Model for carbon cycle, greenhouse
gas mitigation, and biofuel studies, Managing Agricultural Greenhouse Gases: Coordinated Agricultural
Research through GRACEnet to Address our Changing Climate, 2012
Daniel E. Agnew, et al., Engineering Escherichia coli for production of C(1)(2)-C(1)(4)
polyhydroxyalkanoate from glucose, Metabolic Engineering, 2012
Jeffrey G. Gardner, et al., Genetic and functional genomic approaches for the study of plant cell wall
degredation in Celvibrio japonicus, Methods in Enzymology, 2012
Hajime Masukawa, et al., Characterization of carotenogenesis genes in the cyanobacterium Anabaena
sp. PCC 7120, Methods in Molecular Biology, 2012
Cameron R. Currie, The tangled banks of ants and microbes, Microbes and Evolution: The World That
Darwin Never Saw, 2012
Anna A. Visser, et al., Exploring the potential for Actinobacteria as defensive symbionts in fungusgrowing termites, Microbial Ecology, 2012
Venkatesh Balan, et al., Overview to ammonia pretreatments for lignocellulosic biorefineries ,
Microbiology. Dynamic Biochemistry, Process Biotechnology and Molecular Biology, 2012
442.
443.
444.
445.
446.
447.
448.
449.
450.
451.
452.
453.
454.
455.
456.
457.
458.
459.
460.
461.
462.
Jacob K. Jensen, et al., RNA-Seq Analysis of developing nasturtium seeds (Tropaeolum majus):
Identification and characterization of an additional galactosyltransferase involved in xyloglucan
biosynthesis, Molecular Plant, 2012
Jae-Heung Ko, et al., MYB46-mediated transcriptional regulation of secondary wall biosynthesis,
Molecular Plant, 2012
Chao Liang and Teri C. Balser, Warming and nitrogen deposition lessen microbial residue contribution
to soil carbon pool, Nature Communications, 2012
Jer-Ming Chia, et al., Maize HapMap2 identifies extant variation from a genome in flux, Nature
Genetics, 2012
Matthew B Hufford, et al., Comparative population genomics of maize domestication and
improvement, Nature Genetics, 2012
Shawn D. Mansfield, et al., Whole plant cell wall characterization using solution-state 2D NMR, Nature
Protocols, 2012
Ruben Vanholme, et al., Metabolic engineering of novel lignin in biomass crops, New Phytologist, 2012
Aymerick Eudes, et al., Dominique Loque, Biosynthesis and incorporation of side-chain-truncated lignin
monomers to reduce lignin polymerization and enhance saccharification, Plant Biotechnology Journal,
2012
Jae-Heung Ko, et al., Tissue-type-specific transcriptome analysis identifies developing xylem-specific
promoters in poplar, Plant Biotechnology Journal, 2012
S. E. Weise, et al., Engineering starch accumulation by manipulation of phosphate metabolism of
starch, Plant Biotechnology Journal, 2012
Kewei Zhang, et al., An engineered monolignol 4-O-methyltransferase depresses lignin polymerization
and confers novel metabolic capability in Arabidopsis, Plant Cell, 2012
Doug K. Allen, et al., Isotope labelling of RuBisCO subunits provides in vivo information on subcellular
biosynthesis and exchange of amino acids between compartments, Plant Cell and Environment, 2012
Won-Chan Kim, et al., Identification of a cis-acting regulatory motif recognized by MYB46, a master
transcriptional regulator of secondary wall biosynthesis, Plant Molecular Biology, 2012
Yan Wang, et al., Deep EST profiling of developing fenugreek endosperm to investigate
galactomannan biosynthesis and its regulation, Plant Molecular Biology, 2012
Harleen Kaur, et al., Environmental stresses of field growth allow cinnamyl alcohol dehydrogenasedeficient Nicotiana attenuata plants to compensate for their structural deficiencies, Plant Physiology,
2012
Dylan K Kosma, et al., Identification of an Arabidopsis fatty alcohol: caffeoyl-coenzyme A
acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes, Plant physiology,
2012
Satya Swathi Nadakuduti, et al., Pleiotropic phenotypes of the sticky peel mutant provide new insight
into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato, Plant physiology, 2012
Rajandeep S. Sekhon, et al., Transcriptional and metabolic analysis of senescence induced by
preventing pollination in maize, Plant Physiology, 2012
Henrik Tjellstrom, et al., Rapid kinetic labeling of Arabidopsis cell suspension cultures: implications for
models of lipid export from plastids, Plant Physiology, 2012
Olga A. Zabotina, et al., ARAD proteins associated with pectic Arabinan biosynthesis form complexes
when transiently overexpressed in planta, Planta, 2012
Jennifer L. Reed, Shrinking the metabolic solution space using experimental datasets, PLoS
Computational Biology, 2012
463.
464.
465.
466.
467.
468.
469.
470.
471.
472.
473.
474.
475.
476.
477.
478.
479.
480.
481.
482.
Fang Chen, et al., A polymer of caffeyl alcohol in plant seeds, Proceeding of the National Academy of
Sciences USA, 2012
Jason Pell, et al., Scaling metagenome sequence assembly with probabilistic de Bruijn graphs,
Proceedings of the National Academy of Sciences, 2012
Timothy D. Meehan, et al., Pest-suppression potential of Midwestern landscapes under contrasting
bioenergy scenarios, Public Libary of Science ONE, 2012
Astrid Vieler, et al., Guangxi Wu, et al., Genome, functional gene annotation, and nuclear
transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779, Public Library
of Science Genetics, 2012
Candice N. Hansey, et al., Brieanne Vaillancourt, et al., Rajandeep S. Sekhon, et al., Natalia de Leon, et
al., Shawn M. Kaeppler, et al., C. Robin Buell, Maize (Zea mays L.) genome diversity as revealed by
RNA-sequencing, Public Library of Science ONE, 2012
Chris T. Hittinger, Endless rots most beautiful, Science, 2012
Chao Liang, et al., Soil microbial residue storage linked to soil legacy under biofuel cropping systems in
southern Wisconsin, USA, Soil Biology & Biochemistry, 2012
J. Backhaus and David Rothamer, Design methodology for volatility characteristics of bio-derived dropin gasoline fuels, Spring Technical Meeting of the Central States Section of the Combustion Institute,
2012
David Mead, et al., Complete genome sequence of Paenibacillus strain Y4.12MC10, a novel
Paenibacillus lautus strained isolated from Obsidian Hot Spring in Yellowstone National Park,
Standards in Genomic Science, 2012
Venkatesh Balan, et al., Biochemical and thermochemical conversion of switchgrass to biofuels,
Switchgrass: A Valuable Biomass Crop for Energy , 2012
Bruce A. Robertson, et al., Are agrofuels a threat or opportunity for grassland birds in the United
States?, The Condor, 2012
Frank O. Aylward, et al., Metagenomic and metaproteomic insights into bacterial communities in leafcutter ant fungus gardens, The International Society for Microbial Ecology Journal, 2012
S. Withers, et al., Identification of grass-specific enzyme that acylates monolignols with p-coumarate,
The Journal of Biological Chemistry, 2012
Giovanni Bellesia, et al., Coarse-grained model for the interconversion between native and liquid
ammonia-treated crystalline cellulose, The Journal of Physical Chemistry B, 2012
Won-Chan Kim, et al., MYB46 directly regulates the gene expression of secondary wall-associated
cellulose synthases in Arabidopsis, The Plant Journal, 2012
Yan Wang, et al., Identification of an additional protein involved in mannan biosynthesis, The Plant
Journal, 2012
Rebecca M. Lennen and Brian F. Pfleger, Engineering Escherichia coli to synthesize free fatty acids,
Trends in Biotechnology, 2012
Charles H. Haitjema, et al., Universal genetic assay for engineering extracellular protein expression,
ACS Synthetic Biology, 2013
Daniel F. Mooney and Bradford L. Barham, What drives the adoption of clean agricultural technologies?
An ex ante assessment of sustainable biofuel production in southwestern Wisconsin, Agricultural and
Applies Economics Association 2013 Annual Meeting, 2013
Daniel F. Mooney, et al., Sustainable biofuels, marginal agricultural lands, and farm supply response:
Micro-evidence for southwest Wisconsin, Agricultural and Applies Economics Association 2013 Annual
Meeting, 2013
483.
484.
485.
486.
487.
488.
489.
490.
491.
492.
493.
494.
495.
496.
497.
498.
499.
500.
501.
502.
503.
504.
Terenzio Zenone, et al., From set-aside grassland to annual and perennial cellulosic biofuel crops:
Effects of land use change on carbon balance, Agricultural and Forest Meteorology, 2013
Juan Gao, et al., Life cycle analyses is of corn harvest strategies for bio ethanol production, Agronomy
Journal, 2013
Ramin Vismeh, et al., Profiling of diferulates (plant cell wall cross-linkers) using ultrahigh performance
liquid chromatography-tandem mass spectrometry, Analyst, 2013
Elif I. Gurbuz, et al., Conversion of hemicellulose into furfural using solid acid catalysts in ɣvalerolactone, Angewandte Chemie International Edition, 2013
Candice N Hirsch and C Robin Buell, Tapping the promise of genomics in species with complex,
nonmodel genomes, Annual Review of Plant Biology, 2013
Aaron S. Adams, et al., Mountain pine beetles colonizing historical and naïve host trees are associated
with a bacterial community highly enriched in genes contributing to terpene metabolism, Applied and
Environmental Microbiology, 2013
Frank O. Aylward, et al., Comparison of 26 sphingomonad genomes reveals diverse environmental
adaptations and biodegradative capabilities., Applied and Environmental Microbiology, 2013
Trey K Sato, et al., Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose
in hydrolysates of alkaline hydrogen peroxide-pretreated biomass, Applied and environmental
microbiology, 2013
Frank O. Aylward, et al., Leucoagaricus gongylophorus produces diverse enzymes for the degradation
of recalcitrant plant polymers in leaf-cutter ant fungus gardens, Applied and Environmental
Microbiology , 2013
Janet M. Paper, et al., α-Fucosidases with different substrate specificities from two species of Fusarium,
Applied Microbiology and Biotechnology, 2013
J. Tyler Youngquist, et al., Free fatty acid production in Escherichia coli under phosphate-limited
conditions, Applied Microbiology and Biotechnology, 2013
Shishir P.S Chundawat, et al., Primer on ammonia fiber expansion pretreatment, Aqueous
Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, 2013
Natalia de Leon, et al., Breeding maize for lignocellulosic biofuel production, Bioenergy Feedstocks:
Breeding and Genetics, 2013
Ali Azarpira, et al., Catalytic alkaline oxidation of lignin and its model compounds: a pathway to
aromatic biochemicals, Bioenergy Research, 2013
Kolby C Hoagland, et al., Agricultural management of switchgrass for fuel quality and thermal energy
yield on highly erodible land in the driftless area of southwest Wisconsin, BioEnergy Research, 2013
Daniel J. Yelle, et al., Two-dimensional NMR evidence for cleavage of lignin and xylan substituents in
wheat straw through hydrothermal pretreatment and enzymatic hydrolysis, BioEnergy Research, 2013
Phillip J Brumm, Bacterial genomes: what they teach us about cellulose degradation, Biofuels, 2013
Melissa R Christopherson and Garret Suen, Natuure's bioreactor: the rumen as a model for biofuel
production, Biofuels, 2013
Timothy J. Donohue, Interview with Professor Timothy Donohue, Biofuels, 2013
Kenneth Keegstra, Interview with Professor Kenneth Keegstra, Biofuels, 2013
Venkatesh Balan, et al., Review of US and EU initiatives towards development, demonstration and
commercialization of lignocellulosic biofuels, Biofuels, Bioproducts and Biorefining, 2013
Pragnya L. Eranki, et al., The watershed-scale optimized and rearranged landscape design (WORLD)
model and local biomass processing depots for sustainable biofuel production: Integrated life cycle
assessments, Biofuels, Bioproducts and Biorefining, 2013
505.
506.
507.
508.
509.
510.
511.
512.
513.
514.
515.
516.
517.
518.
519.
520.
521.
522.
523.
524.
525.
526.
Yuan Zhang, et al., A sensitive and accurate protein domain classification tool (SALT) for short reads,
Bioinformatics, 2013
Andrew R. Jakubowski, et al., Genetic evidence suggests a widespread distribution of native North
American populations of reed canarygrass, Biological Invasions, 2013
S. L. Smith, et al., Yield and quality analyses of bioenergy crops grown on a regulatory brownfield,
Biomass and BioEnergy, 2013
Mark S. Decanio, et al., The non-pathogenic Escherichia coli strain W secretes SslE via the virulenceassociated type II secretion system beta, BioMed Central Microbiology, 2013
Mingjie Jin, et al., Effect of storage conditions on the stability and fermentability of enzymatic
lignocellulosic hydrolysate, Bioresource Technology, 2013
John S. King, et al., The challenge of lignocellulosic bioenergy in a water-limited world, BioScience,
2013
Yogender Kumar Gowtham, et al., A novel two-stage fermentation process for bioethanol production
using Saccharomyces pastorianus, Biotechnol Prog, 2013
Bryan D Bals, et al., Enzymatic hydrolysis of pelletized AFEX™‐treated corn stover at high solid
loadings, Biotechnology and Bioengineering, 2013
Zhenglun Li, et al., Catalysis with CuII(bpy) improves alkaline hydrogen peroxide pretreatment,
Biotechnology and Bioengineering, 2013
Zhenglun Li, et al., Rapid and effective oxidative pretreatment of woody biomass at mild reaction
conditions and low oxidant loadings, Biotechnology and Biofuels, 2013
Roger Chylla, et al., Plant cell wall profiling by fast maximum likelihood reconstruction (FMLR) and
region-of-interest (ROI) segmentation of solution-state 2D 1H–13C NMR spectra, Biotechnology for
Biofuels, 2013
Shuhaida Harun, et al., Performance of AFEXTM pretreated rice straw as source of fermentable sugars:
The influence of particle size., Biotechnology for Biofuels, 2013
Dina Jabbour, et al., Enhancement of fermentable sugar yields by α-xylosidase supplementation of
commercial cellulases, Biotechnology for Biofuels, 2013
Mingjie Jin, et al., Phenotypic selection of a wild Saccharomyces cerevisiae strain for simultaneous
saccharification and co-fermentation of AFEX™ pretreated corn stover, Biotechnology for Biofuels,
2013
Cameron Cotton and Jennifer L. Reed, Constraint-based strain design using continuous modifications
(CosMos) of flux bounds finds new strategies for metabolic engineering, Biotechnology Journal, 2013
Cameron Cotton and Jennifer L. Reed, Mechanistic analysis of multi-omics datasets to generate kinetic
parameters for constraint-based metabolic models, BMC Bioinformatics, 2013
Jeong-Jin Park, et al., Cell-specific gene expression in Anabaena variabilis grown phototrophically,
mixotrophically, and heterotrophically, BMC Genomics, 2013
Saheed Imam, et al., Global insights into energetic and metabolic networks in Rhodobacter
sphaeroides, BMC systems biology, 2013
Caroline E Ridley, et al., Debate: Can bioenergy be produced in a sustainable manner that protects
biodiversity and avoids the risk of invaders?, Bulletin of the Ecological Society of America, 2013
Ramin Vismeh, et al., Profiling of soluble neutral oligosaccharides from treated biomass using solid
phase extraction and LC-TOF MS, Carbohydrate Polymers, 2013
David Martin Alonso, et al., Direct conversion of cellulose to levulinic acid and gamma-valerolactone
using solid acid catalysts, Catalysis Science and Technology, 2013
Junhong He, et al., Controlled incorporation of deuterium into bacterial cellulose, Cellulose, 2013
527.
528.
529.
530.
531.
532.
533.
534.
535.
536.
537.
538.
539.
540.
541.
542.
543.
544.
545.
546.
547.
548.
549.
Daniel L. Williams and David B. Hodge, Impacts of delignification and hot water pretreatment on the
water induced cell wall swelling behavior of grasses and its relation to cellulolytic enzyme hydrolysis
and binding, Cellulose, 2013
Dong Wang, et al., Selective production of aromatics from alkylfurans over solid acid catalysts,
ChemCatChem, 2013
Aarthi Chandrasekaran, et al., A universal flow cytometry assay for screening carbohydrate-active
enzymes using glycan microspheres, Chemical Communications, 2013
Dong Wang, et al., A highly selective route to linear alpha olefins from biomass-derived lactones and
unsaturated acids, Chemical Communications, 2013
Daniel E. Agnew and Brian F. Pfleger, Synthetic biology strategies for synthesizing
polyhydroxyalkanoates from unrelated carbon sources, Chemical Engineering Science, 2013
Benjamin R. Caes, et al., Organocatalytic conversion of cellulose into a platform chemical, Chemical
Science, 2013
BR Caes, et al., Simulated moving bed chromatography: separation and recovery of sugars and ionic
liquid from biomass hydrolysates, ChemSusChem, 2013
Rebecca M. Lennen and Brian F. Pfleger, Microbial production of fatty acid-derived fuels and chemicals,
Current Opinion in Biotechnology, 2013
David A Rothamer and Timothy J. Donohue, Chemistry and combustion of fit-for-purpose biofuels,
Current Opinion in Chemical Biology, 2013
Philip D Bates, et al., Biochemical pathways in seed oil synthesis, Current Opinion Plant Biology, 2013
Elsa E. Cleland, et al., Sensitivity of grassland plant community composition to spatial vs. temporal
variation in precipitation, Ecology, 2013
Joyce M Parker, et al., What learning progressions on carbon-transforming processes tell us about how
students learn to use the laws of conservation of matter and energy, Educacion Quimica, 2013
B. A. Robertson and P.J. Doran, Biofuels and biodiversity: the implications of energy sprawl,
Encyclopedia of Biodiversity, 2013
Jiyong Kim, et al., An optimization-based assessment framework for biomass-to-fuel conversion
strategies, Energy & Environmental Science, 2013
Aklesso Egbendewe-Mondzozo, et al., Maintaining environmental quality while expanding biomass
production: Sub-regional U.S. policy simulations, Energy Policy, 2013
Xuesong Zhang, et al., Efficient multi-objective calibration of a computationally intensive hydrologic
model with parallel computing software in Python, Environmental Modelling & Software, 2013
Aklesso Egbendewe-Mondzozo, et al., Can dispersed biomass processing protect the environment and
cover the bottom line for biofuel?, Environmental Science and Technology, 2013
Henrik Tjellstrom, et al., Disruption of plastid acyl:acyl carrier protein synthetases increases medium
chain fatty acid accumulation in seeds of transgenic Arabidopsis, FEBS Letters, 2013
Simone Kraatz, et al., Energy intensity and global warming potential of corn grain ethanol production in
Wisconsin (USA), Food and Energy Security, 2013
Jordan A Fish, et al., FunGene: the functional gene pipeline and repository, Frontiers in Microbiology,
2013
C Ryan Penton, et al., Functional genes to assess nitrogen cycling and aromatic hydrocarbon
degradation: primers and processing matter, Frontiers in Microbiology, 2013
Jacob Krüger Jensen, et al., Discovery of diversity in xylan biosynthetic genes by transcriptional
profiling of a heteroxylan containing mucilaginous tissue, Frontiers in Plant Science, 2013
Christopher Schwartz and Richard Amasino, Nitrogen recycling and flowering time in perennial
bioenergy crops, Frontiers in Plant Science, 2013
550.
551.
552.
553.
554.
555.
556.
557.
558.
559.
560.
561.
562.
563.
564.
565.
566.
567.
568.
569.
570.
571.
Marin M Palmer, et al., Conversion of open lands to short‐rotation woody biomass crops: site variability
affects nitrogen cycling and N2O fluxes in the US Northern Lake States, GCB Bioenergy, 2013
Scott D. Peckham and Stith T. Gower, Simulating the effects of harvest and biofuel production on the
forest system carbon balance of the Midwest, USA, GCB Bioenergy, 2013
Timothy Mathes Beissinger, et al., Marker density and read-depth for genotyping populations using
genotyping-by-sequencing, Genetics, 2013
Frank O. Aylward, et al., Complete genome of Enterobacteriaceae Bacterium strain FGI 57, a strain
associated with leaf-cutter ant fungus gardens, Genome Announcements, 2013
Frank O. Aylward, et al., Complete genome of Serratia sp. strain FGI 94, a strain associated with leafcutter ant fungus gardens, Genome Announcements, 2013
L Ruan and G. Philip Robertson, Initial nitrous oxide, carbon dioxide, and methane costs of converting
conservation reserve program grassland to row crops under no-till vs. conventional tillage, Global
Change Biology, 2013
David Martin Alonso, et al., Gamma-valerolactone, a sustainable platform molecule derived from
lignocellulosic biomass, Green Chemistry, 2013
Ryan J. Stoklosa, et al., Correlating lignin structural features to phase partitioning behavior in a novel
aqueous fractionation of softwood Kraft black liquor, Green Chemistry, 2013
Shujiang Kang, et al., Marginal lands: Concept, assessment and management, Journal of Agricultural
Science, 2013
Jorge Rencoret, et al., Structural characterization of lignin isolated from coconut (Cocos nucifera) coir
fibers, Journal of Agriculture and Food Chemistry, 2013
Dan L Gall, et al., Benzoyl Coenzyme A Pathway-Mediated Metabolism of meta-Hydroxy-Aromatic
Acids in Rhodopseudomonas palustris, Journal of Bacteriology, 2013
Rebecca M. Lennen, et al., Identification of transport proteins involved in free fatty acid efflux in
Escherichia coli, Journal of Bacteriology, 2013
Christopher M. Bianchetti, et al., Fusion of dioxygenase and lignin-binding domains in a novel secreted
enzyme from cellulolytic streptomyces sp. SirexAA-E, Journal of Biological Chemistry, 2013
Varaprasad Bandaru, et al., Soil carbon change and net energy associated with biofuel production on
marginal lands: A regional modeling perspective, Journal of Environmental Quality, 2013
Nicholas Jordan, et al., Landlabs:An integrated approach to creating agricultural enterprises that meet
the triple botom line, Journal of Higher Education Outreach and Engagement, 2013
Christopher M. Bianchetti, et al., Structure, dynamics, and specificity of Endoglucanase D from
Clostridium cellulovorans, Journal of Molecular Biology, 2013
Won-Chan Kim, et al., Transcription factor MYB46 is an obligate component of the transcriptional
regulatory complex for functional expression of secondary wall-associated cellulose synthases in
Arabidopsis thaliana, Journal of Plant Physiology, 2013
Carol L. Williams, et al., Grass-shed: Place and process for catalyzing perennial grass bioeconomies and
their potential multiple benefits, Journal of Soil and Water Conservation, 2013
Alireza Rahimi, et al., Chemoselective metal-free aerobic alcohol oxidation in lignin, Journal of the
American Chemical Society, 2013
S. Kang, et al., Hierarchical marginal land assessment for land use planning, Land Use Policy, 2013
Venkatesh Balan, et al., The saccharification step: Trichoderma reesei cellulase hyper producer strains.,
Lignocellulose Conversion: Enzymatic and Microbial Tools for Bioethanol Production, 2013
G Muttoni, et al., Cell wall composition and biomass digestibility diversity in Mexican maize (Zea mays
L.) landraces and CIMMYT elite inbred lines, Maydica, 2013
572.
573.
574.
575.
576.
577.
578.
579.
580.
581.
582.
583.
584.
585.
586.
587.
588.
589.
590.
591.
592.
593.
Qiong Wang, et al., Ecological patterns of nifH genes in four terrestrial climatic zones explored with
targeted metagenomics using FrameBot, a new informatics tool, mBio, 2013
Xuewen Chen, et al., Dynamic metabolic flux analysis of plant cell wall synthesis, Metabolic
Engineering, 2013
J Tyler Youngquist, et al., Production of medium chain length fatty alcohols from glucose in Escherichia
coli, Metabolic engineering, 2013
Elsa Góngora-Castillo and C. Robin Buell, Bioinformatics challenges in de novo transcriptome assembly
using short read sequences in the absence of a reference genome sequence, Natural Product Reports,
2013
Ilya Gelfand, et al., Sustainable bioenergy production from marginal lands in the US Midwest, Nature,
2013
Rachel A. Mooney and Robert Landick, Building a better stop sign: understanding the signals that
terminate transcription, Nature Methods, 2013
Bartel Vahnolme, et al., Breeding with rare defective alleles (BRDA): A natural Populus nigra HCT
mutant with modified lignin as a case study, New Phytologist, 2013
James R Cole, et al., Ribosomal Database Project: data and tools for high throughput rRNA analysis,
Nucleic Acids Research, 2013
Timothy L Dickson and Katherine L Gross, Plant community responses to long-term fertilization:
changes in functional group abundance drive changes in species richness, Oecologia, 2013
Armin Wagner, et al., Suppression of CCR impacts metabolite profile and cell wall composition in Pinus
radiata tracheary elements, Plant and Molecular Biology, 2013
Won-Chan Kim, et al., Transcription factors that directly regulate the expression of CSLA9 encoding
mannan synthase in Arabidopsis thaliana, Plant Molecular Biology, 2013
Patrick J. Horn, et al., Identification of a new class of lipid droplet-associated proteins in plants, Plant
Physiology, 2013
Thomas Ream, et al., Interaction of photoperiod and vernalization determine flowering time of
Brachypodium distachyon, Plant Physiology, 2013
Manuel A Troncoso-Ponce, et al., Lipid turnover during senescence, Plant Science, 2013
Satinder K Gidda, et al., Lipid droplet-associated proteins (LDAPs) are involved in the
compartmentalization of lipophilic compounds in plant cells, Plant Signaling & Behavior, 2013
Dongjun Chung, et al., dPeak: High resolution identification of transcription factor binding sites from
PET and SET ChIP-Seq data, PLoS computational biology, 2013
Kevin S. Myers, et al., Genome-scale analysis of Escherichia coli FNR reveals complex features of
transcription factor binding, PLoS Genetics, 2013
Dan M. Park, et al., The bacterial response regulator ArcA uses a diverse binding site architecture to
regulate carbon oxidation globally , PLOS Genetics, 2013
Jonathan L. Klassen and Cameron R. Currie, ORFcor: Identifying and accommodating ORF prediction
inconsistencies for phylogenetic analysis, PLoS ONE, 2013
Christopher J Kucharik, et al., Miscanthus establishment and overwintering in the Midwest USA: A
regional modeling study of crop residue management on critical minimum soil temperatures, PloS one,
2013
Rebecca M. Lennen and Brian F. Pfleger, Modulating membrane composition alters free fatty acid
tolerance in Escherichia coli, PLoS ONE, 2013
David Mead, et al., Genomic and enzymatic results show Bacillus cellulosilyticus uses a novel set of
LPXTA carbohydrases to hydrolyze polysaccharides, PLoS ONE, 2013
594.
595.
596.
597.
598.
599.
600.
601.
602.
603.
604.
605.
606.
607.
608.
609.
610.
611.
612.
613.
Timothy D Meehan, et al., , Ecosystem-service tradeoffs associated with switching from annual to
perennial energy crops in riparian zones of the US Midwest, PloS one, 2013
Antonion Goncalves, et al., A problog model for analyzing gene regulatory networks, Proceedings of
the 22nd International Conference on Inductive Logic Programming, 2013
Dahai Gao, et al., Increased enzyme binding to substrate is not necessary for more efficient cellulose
hydrolysis, Proceedings of the National Academy of Sciences, 2013
Qiao Zhao, et al., Loss of function of Cinnamyl Alcohol Dehydrogenase 1 causes accumulation of an
unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula, Proceedings
of the National Academy of Sciences, 2013
Jeremy J Minty, et al., Design and characterization of synthetic fungal-bacterial consortia for direct
production of isobutanol from cellulosic biomass, Proceedings of the National Academy of Sciences of
the United States of America, 2013
Shanfa Lu, et al., Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in
Populus trichocarpa, Proceedings of the National Academy of Sciences U.S.A, 2013
Melissa R. Christopherson, et al., The genome sequences of Cellulomonas fimi and “Cellvibrio gilvus”
reveal the cellulolytic strategies of two facultative anaerobes, transfer of “Cellvibrio gilvus” to the genus
Cellulomonas, and proposal of Cellulomonas gilvus sp. nov, Public Library of Science ONE, 2013
W Ma, et al., Q Kong, et al., WRINKLED1, a ubiquitous regulator in oil accumulating tissues from
Arabidopsis embryos to oil palm mesocarp, Public Library of Science ONE, 2013
Rajandeep S Sekhon, et al., Maize gene atlas developed by RNA sequencing and comparative
evaluation of transcriptomes based on RNA sequencing and microarrays, Public Library of Science,
ONE, 2013
Kevin Andreassi, et al., Aromatic hydrocarbons from biomass fast pyrolysis and catalysis, Red Cedar
Undergraduate Research, 2013
H. Asbjornsen, et al., Targeting perennial vegetation in agricultural landscapes for enhancing
ecosystem services, Renewable Agriculture and Food Systems, 2013
Alan Culbertson, et al., In-house cellulase production from AFEX™ pretreated corn stover using
Trichoderma reesei RUT C-30, RSC Advances, 2013
Yimin Zhu, et al., Preparation of monolignol γ-acetate, γ-p-hydroxycinnamate, and γ-phydroxybenzoate conjugates: selective deacylation of phenolic acetates with hydrazine acetate, RSC
Advances, 2013
Ruben Vanholme, et al., Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic
pathway in Arabidopsis, Science, 2013
Xuesong Zhang, et al., Modifying the soil and water assessment tool to simulate cropland carbon flux:
Model development and initial evaluation, Science of the Total Environment, 2013
Taichi E. Takasuka, et al., Aerobic deconstruction of cellulosic biomass by an insect-associated
Streptomyces, Scientific Reports, 2013
Zarraz M Lee and Thomas M Schmidt, Bacterial growth efficiency varies in soils under different land
management practices, Soil Biology and Biochemistry, 2013
Gregg R Sanford and Christopher J Kucharik, Effect of methodological consideration on soil carbon
parameter estimates obtained via the acid hydrolysis-incubation method, Soil Biology and
Biochemistry, 2013
Brianna EL Duran and Christopher J Kucharik, Comparison of two chamber methods for measuring soil
trace-gas fluxes in bioenergy cropping systems, Soil Science Society of America Journal, 2013
Michael D. Casler, Switchgrass breeding, genetics, and genomics, Switchgrass, 2013
614.
615.
616.
617.
618.
619.
620.
621.
622.
623.
624.
625.
626.
627.
628.
629.
630.
631.
632.
633.
634.
635.
Sanjaya, et al., Altered lipid composition and enhanced nutritional value of arabidopsis leaves following
introduction of an algal diacylglycerol acyltransferase 2, The Plant Cell, 2013
Yuki Tobimatsu, et al., Coexistence but independent biosynthesis of catechyl and guaiacyl/syringyl
lignins in plant seeds, The Plant Cell, 2013
Fang Chen, et al., Novel seed coat lignins in the Cactaceae: structure, distribution and implications for
the evolution of lignin diversity, The Plant Journal, 2013
Yuki Tobimatsu, et al., Visualization of plant cell wall lignification using fluorescence-tagged
monolignols, The Plant Journal, 2013
Jean Marcel R. Gallo, et al., Production of furfural from lignocellulosic biomass using Beta Zeolite and
biomass-derived solvent, Topics in Catalysis, 2013
Christopher T. Hittinger, Saccharomyces diversity and evolution: a budding model genus, Trends in
Genetics, 2013
Kai Deng, et al., Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and
nanostructure-initiator mass spectrometry (NIMS), ACS Chemical Biology, 2014
Ashley Bennett, et al., Rufus Isaacs, Landscape composition influences pollinators and pollination
services in perennail biofuel plantings, Agriculture Ecosystems & Environment, 2014
S. P. Syswerda and G. P. Robertson, Ecosystem services along a management gradient in Michigan
(USA) cropping systems, Agriculture, Ecosystems & Environment, 2014
Tagir G. Gilmanov, et al., Productivity and Carbon Dioxide Exchange of Leguminous Crops: Estimates
from Flux Tower Measurements, Agronomy Journal, 2014
Janet L. Hedtcke, et al., Maximizing land use during switchgrass establishment in the North Central
United States, Agronomy Journal, 2014
Bradley J. Kells and Scott M. Swinton, Profitability of cellulosic biomass production in the northern
Great Lakes Region, Agronomy Journal, 2014
Adam J Book, et al., Cellulolytic Streptomyces strains associated with herbivorous insects share a
phylogenetically-linked capacity for the degradation of lignocellulose, Applied and Environmental
Microbiology, 2014
Fachuang Lu, Lignin: Structural Analysis, Applications in Biomaterials, and Ecological Significance,
Biochemistry Research Trends, 2014
Seungdo Kim, et al., Energy Requirements and Greenhouse Gas Emissions of Maize Production in the
USA, BioEnergy Research, 2014
W. R. Wieder, et al., Integrating microbial physiology and physiochemical principles in soils with the
MIcrobial-MIneral Carbon Stabilization (MIMICS) model, Biogeosciences Discuss., 2014
Shantanu Kelkar, et al., Pyrolysis of North-American grass species: Effect of feedstock composition and
taxonomy on pyrolysis products, Biomass and Bioenergy, 2014
Theodoros Skevas, et al., What type of landowner would supply marginal land for energy crops?,
Biomass and BioEnergy, 2014
Aditya Bhalla, et al., Novel thermostable endo-xylanase cloned and expressed from bacterium
Geobacillus sp. WSUCF1, Bioresource Technology, 2014
James F Humpula, et al., Probing the nature of AFEX-pretreated corn stover derived decomposition
products that inhibit cellulase activity, Bioresource Technology, 2014
Adam J Book, et al., Evolution of substrate specificity in bacterial AA10 lytic polysaccharide
monooxygenases, Biotechnology for Biofuels, 2014
Xiadi Gao, et al., Comparison of enzymatic reactivity of corn stover solids prepared by dilute Acid,
AFEXTM, and ionic liquid pretreatments, Biotechnology for Biofuels, 2014
636.
637.
638.
639.
640.
641.
642.
643.
644.
645.
646.
647.
648.
649.
650.
651.
652.
653.
654.
655.
656.
657.
658.
Jabbour, et al., Factors contributing to recalcitrance of herbaceous dicotyledons (forbs) to enzymatic
deconstruction, Biotechnology for Biofuels, 2014
Cory Sarks, et al., Studying the rapid bioconversion of lignocellulosic sugars into ethanol using high cell
density fermentations with cell recycle, Biotechnology for Biofuels, 2014
Nirmal Uppugundla, et al., Comparative study of ethanol production using dilute acid, ionic liquid and
AFEX™ pretreated corn stover, Biotechnology for Biofuels , 2014
Cory D. Hirsch, et al., Reduced representation approaches to interrogate genome diversity in large,
repetitive plant genomes, Briefings in Functional Genomics, 2014
Taichi E. Takasuka, et al., Cell-free translation of biofuels enzymes, Cell-Free Protein Synthesis:
Methods and Protocols, 2014
Brett G. Diehl, et al., Towards lignin-protein crosslinking: amino acid adducts of a lignin model quinone
methide, Cellulose, 2014
R Weingarten, et al., Selective conversion of cellulose to hydroxymethylfurfural in polar aprotic
solvents, ChemCatChem, 2014
Jeff S Piotrowski, et al., Chemical genomic profiling to predict compound mode of action, Chemical
Biology- Methods and Protocols, 2014
David Chiaramonti, et al., Industrial initiatives towards lignocellulosic biofuel deployment: an
assessment in US and EU, Chemical Engineering Transactions, 2014
Sara C. Pryor, et al., Ch. 18: Midwest, Climate Change Impacts in the United States: The Third National
Climate Assessment, 2014
Christopher. H. Calvey, et al., An optimized transformation protocol for Lipomyces starkeyi, Current
Genetics, 2014
Joonhoon Kim and Jennifer L. Reed, Refining metabolic models and accounting for regulatory effects,
Current Opinion in Biotechnology, 2014
Eric L. Huang, et al., The Fungus Gardens of Leaf-cutter Ants Undergo a Distinct Physiological
Transition During Biomass Degradation, Environmental Microbiology Reports, 2014
Bruce E Dale, et al., Take a closer look: biofuels can support environmental, economic and social goals,
Environmental Science and Technology, 2014
Michael A. Held, et al., Identifying protein-protein interactions in Arabidopsis by coimmunoprecipitation of GFP-tagged proteins and proteomic detection, Fluorescent Proteins, 2014
J. Chen, et al., Chapter 6 - Carbon fluxes and storages in forests and landscapes, Forest landscapes and
global change: challenges for research and management, 2014
Jeff S Piotrowski, et al., Death by a thousand cuts: the challenges and diverse landscape of
lignocellulosic hydrolysate inhibitors, Frontiers in Microbiology, 2014
Daniel P. Woods, et al., Memory of the vernalized state in plants including the model grass
Brachypodium distachyon, Frontiers in Plant Science, 2014
Lisa K. Tiemann, et al., Mechanisms of soil carbon accrual and storage in bioenergy cropping systems,
GCB Bioenergy, 2014
Timothy M Beissinger, et al., A genome-wide scan for evidence of selection in a maize population under
long-term artificial selection for ear number., Genetics, 2014
M. Thomson, et al., The contribution of future agricultural trends in the US Midwest to global climate
change mitigation, Global Environmental Change, 2014
Jeehoon Han, et al., A strategy for the simultaneous catalytic conversion of hemicellulose and cellulose
from lignocellulosic biomass to liquid transportation fuels, Green Chemistry, 2014
Shantanu Kelkar, et al., Aromatics from biomass pyrolysis vapour using a bifunctional mesoporous
catalyst, Green Chemistry, 2014
659.
660.
661.
662.
663.
664.
665.
666.
667.
668.
669.
670.
671.
672.
673.
674.
675.
676.
677.
678.
679.
Zhenglong Li, et al., A mild approach for bio-oil stabilization and upgrading: electrocatalytic
hydrogenation using ruthenium supported on activated carbon cloth, Green Chemistry, 2014
Anurag Mandalika, et al., Integrated biorefinery model based on production of furans using open-ended
high yield processes, Green Chemistry, 2014
Dan L. Gall, et al., Sterochemical features of glutathione-dependent enzymes in the Sphingobium sp.
strain SYK-6 β-aryl etherase pathway, Journal of Biological Chemistry, 2014
John Mullet, et al., Energy Sorghum-a genetic model for the design of C4 grass bioenergy crops, Journal
of Experimental Botany, 2014
M. Deal, et al., Net primary production in three bioenergy crop systems following land conversion,
Journal of Plant Ecology, 2014
Fachuang Lu and John Ralph, The DFRC (Derivatization Followed by Reductive Cleavage) method and
its applications for lignin characterization, Lignin: Structural Analysis, Applications in Biomaterials, and
Ecological Significance, 2014
Christopher W. Lennon, et al., A Rhodobacter sphaeroides protein mechanistically similar to
Escherichia coli DskA regulates photosynthetic growth, mBio, 2014
David Peris, et al., Population Structure and Reticulate Evolution of Saccharomyces eubayanus and Its
Lager-Brewing Hybrids, Molecular ecology, 2014
Pedro Almeida, et al., A Gondwanan imprint on global diversity and domestication of wine and cider
yeast Saccharomyces uvarum, Nat Commun, 2014
Nicholas D Bonawitz, et al., Disruption of Mediator rescues the stunted growth of a lignin-deficient
Arabidopsis mutant, Nature, 2014
Sang-Jin Kim and Federica Brandizzi, The plant secretory pathway: an essential factory for building the
plant cell, Plant and Cell Physiology, 2014
Candice N Hirsch, et al., Insights into the maize pan-genome and pan-transcriptome, Plant Cell, 2014
Joseph Evans, et al., Nucleotide polymorphism and copy number variant detection using exome
capture and next generation sequencing in the polyploidy grass Panicum virgatum, Plant Journal, 2014
R. Green, et al., K. M. Lewis, et al., J. T. Barr, et al., J. P. Jones, et al., F. Lu, et al., J. Ralph, et al., W.
Vermerris, et al., S. E. Sattler, et al., C. Kang, Determination of the structure and catalytic mechanism
of Sorghum bicolor caffeic acid O-methyltransferase and the structural impact of three brown midrib12
mutations, Plant Physiology, 2014
Rajandeep S Sekhon, et al., Phenotypic and transcriptional analysis of divergently selected maize
populations reveals the role of developmental timing in seed size determination, Plant Physiology, 2014
Bartel Vanholme, et al., Accumulation of N-acetylglucosamine oligomers in the plant cell wall affects
plant architecture in a dose-dependent and conditional manner, Plant Physiology, 2014
Rebecca Garlock Ong, et al., Linking plant biology and pretreatment: Understanding the structure and
organization of the plant cell wall and interactions with cellulosic biofuel production, Plants and
Bioenergy, 2014
N. C. Kyrpides, et al., Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type
strains, PLoS Biology, 2014
Saheed Imam, et al., Global analysis of photosynthesis transcriptional regulatory networks, PLoS
Genetics, 2014
Taichi E. Takasuka, et al., Biochemical properties and atomic resolution structure of a proteolytically
processed β-mannanase from cellulolytic Streptomyces sp. SirexAA-E, PLOs ONE, 2014
Phillip D Bates, et al., Fatty acid synthesis is inhibited by inefficient utilization of unusual fatty acids for
glycerolipid assembly, Proceedings of the National Academy of Sciences of the United States of
America, 2014
680.
681.
682.
683.
684.
685.
686.
687.
688.
689.
690.
691.
692.
693.
694.
695.
696.
697.
698.
699.
Rembrant J.F. Haft, et al., Correcting Direct Effects of Ethanol on Translation and Transcription
Machinery Confers Ethanol Tolerance in Bacteria, Proceedings of the National Academy of Sciences of
the United States of America, 2014
Adina Chuang Howe, et al., Tackling soil diversity with the assembly of large, complex metagenomes,
Proceedings of the National Academy of Sciences of the United States of America, 2014
R. A. S. Lemke, et al., Synthesis and scaveging role of furan fatty acids, Proceedings of the National
Academy of Sciences of the United States of America, 2014
Robert W Riley, et al., Extensive sampling of basidiomycete genomes demonstrates inadequacy of the
white rot/brown rot paradigm for wood decay fungi, Proceedings of the National Academy of Sciences
of the United States of America, 2014
Iurii Shcherbak, et al., Global metaanalysis of the nonlinear response of soil nitrous oxide (N2O)
emissions to fertilizer nitrogen, Proceedings of the National Academy of Sciences of the United States
of America, 2014
Rebecca Van Acker, et al., Improved saccharification and ethanol yield from field-grown transgenic
poplar deficient in cinnamoyl-CoA reductase, Proceedings of the National Academy of Sciences of the
United States of America, 2014
Ben P. Werling, et al., Perennial grasslands enhance biodiversity and multiple ecosystem services in
bioenergy landscapes, Proceedings of the National Academy of Sciences of the United States of
America, 2014
Jean-Baptiste Leducq, et al., Local climatic adaptation in a widespread microorganism, Proceedings of
the Royal Society B: Biological Sciences, 2014
Sungsoo Lim, et al., Expression, purification and characterization of a functional carbohydrate-binding
module from Streptomyces sp. SirexAA-E, Protein expression and purification, 2014
Taichi E Takasuka, et al., Structure-guided analysis of catalytic specificity of the abundantly secreted
chitosanase SACTE_5457 from Streptomyces sp. SirexAA-E, Proteins, 2014
James R Cole, and James M Tiedje, History and impact of RDP: A legacy from Carl Woese to
microbiology, RNA Biology, 2014
Hoon Kim and John Ralph, A gel-state 2D-NMR method for plant cell wall profiling and analysis: model
study with the amorphous cellulose and xylan from ball-milled cotton linters, RSC Advances, 2014
Jermey S Luterbacher, et al et al., Nonenzymatic sugar production from biomass using biomass-derived
γ-valerolactone, Science, 2014
Curtis G. Wilkerson, et al., Monolignol ferulate transferase introduces chemically labile linkages into
the lignin backbone, Science, 2014
Jeffrey A Martin, et al., A near complete snapshot of the Zea mays seedling transcriptome revealed
from ultra-deep sequencing, Scientific Reports, 2014
Iurii Shcherbak and G. Philip Robertson, Determining the Diffusivity of Nitrous Oxide in Soil using In
Situ Tracers, Soil Sci. Soc. Am. J., 2014
V. Bandaru, et al., Estimating biomass potential of switchgrass and miscanthus on US Marginal Lands
using ordinary least square regression models, Sustainable Biofuels: An Ecological Assessment of the
Future Energy, 2014
Oleg Moskvin, et al., Making sense of RNAseq data: from low-level processing to functional analysis,
Systems Biomedicine, 2014
G Philip Robertson, et al., Soil greenhouse gas emissions and their mitigation, The Encyclopedia of
Agriculture and Food Systems, 2014
Kevin L. Childs, et al., Generation of transcript assemblies and identification of single nucleotide
polymorphisms from seven lowland and upland cultivars of switchgrass, The Plant Genome, 2014
700.
701.
702.
703.
704.
705.
706.
707.
708.
709.
710.
711.
712.
713.
714.
715.
716.
717.
718.
719.
720.
721.
722.
723.
Deborah L Petrik, et al., p-Coumaroyl-CoA:Monolignol Transferase (PMT) acts specifically in the lignin
biosynthetic pathway in Brachypodium distachyon, The Plant Journal, 2014
V. Balan, et al., Lignocellulosic biomass pretreatment for enzymatic hydrolysis, Book Catalytic
Transformation of Cellulose, 2014
X. Tang, et al., Designer synthetic media for studying microbial-catalyzed biofuel production,
Biotechnology for Biofuels, 2014
G. P. Robertson, et al., Questionable conclusions about the CO2 cost of stover removal from Midwest
soils, Nature Climate Change, 2014
H. Liere, et al., Trophic cascades in agricultural landscapes: indirect effects of landscape composition
on crop yield, Ecological Applications, 2014
A. Rahimi, et al., Formic-acid-induced depolymerization of oxidized lignin to aromatics, Nature, 2014
L. Sundin, et al., Mutation of the inducible ARABIDOPSIS THALIANA CYTOCHROME P450
REDUCTASE2 alters lignin composition and improves saccharification, Plant physiology, 2014
S. Imam, et al., CceR and AkgR regulate central carbon and energy metabolism in ⍺-proteobacteria,
mBio, 2014
A. C. Peterson, et al., Development of a GC/quadrupole-orbitrap mass spectrometer, Part I: Design and
characterization, Analytical Chemistry, 2014
W. G. Alexander, et al., High-efficiency genome editing and allele replacement in prototrophic and wild
strains of Saccharomyces, Genetics, 2014
S. Kim, et al., Indirect land use change and biofuels: Mathematical analysis reveals a fundamental flaw
in the regulatory approach, Biomass and BioEnergy, 2014
C. H. Lam, et al., Electrocatalytic upgrading of model lignin monomers with earth abundant metal
electrodes, Green Chemistry, 2014
B. E. Dale and S. Kim, Can the predictions of consequential life cycle assessment be tested in the real
world? Comment on “Using Attributional Life Cycle Assessment to Estimate Climate-Change
Mitigation...”, Journal of Industrial Ecology, 2014
E. Vinay-Lara, et al., Genome-scale reconstruction of metabolic networks of Lactobacillus casei ATCC
334 and 12A, PLoS One, 2014
J. Greenler, et al., Cellulose breakdown, The Science Teacher, 2014
B. E. Dale, Sobering numbers, Resource, 2014
S. Singh, et al., Comparison of different biomass pretreatment techniques and their impact on
chemistry and structure, Frontiers in Energy Research, 2014
S. Imam, et al., Quantifying the effects of light intensity on bioproduction and maintenance energy
during photosynthetic growth of Rhodobacter sphaeroides, Photosynthesis Research, 2014
J. G. Gardner, et al., Systems biology defines the biological significance of redox-active proteins during
cellulose degradation in an aerobic bacterium, Molecular Microbiology, 2014
D. F. Mooney, et al., Inelastic and fragmented farm supply response to second-generation bioenergy
feedstocks: Ex ante survey evidence from wisconsin, Applied Economics Perspectives and Policy, 2014
D. J. Wohlbach, et al., Comparative genomics of Saccharomyces cerevisiae natural isolates for
bioenergy production, 2014
M. A. Mellmer, et al., Solvent effects in acid-catalyzed biomass conversion reactions, 2014
S. M. Collier, et al., Measurement of greenhouse gas flux from agricultural soils using static chambers,
2014
G. P. Robertson, et al., CO2 emissions from crop residue-derived biofuels, Nature Climate Change,
2014
724.
725.
726.
727.
728.
729.
730.
731.
732.
733.
734.
735.
736.
737.
738.
739.
740.
741.
742.
743.
744.
745.
A. B. Bennett, et al., Modeling pollinator community response to contrasting bioenergy scenarios,,
2014
M. Abraha, et al., Evapotranspiration of annual and perennial biofuel crops in a variable climate, GCB
Bioenergy, 2014
I. Gelfand and G. Philip Robertson, A reassessment of the contribution of soybean biological nitrogen
fixation to reactive N in the environment, Biogeochemistry, 2014
Z. Xiang, et al., Film-forming polymers from distillers’ grains: structural and material properties,
Industrial Crops and Products, 2014
R. Sahajpal, et al., Identifying representative crop rotation patterns and grassland loss in the US
Western Corn Belt, Computers and Electronics in Agriculture, 2014
F. O. Aylward, et al., Convergent bacterial microbiotas in the fungal agricultural systems of insects,
MBio, 2014
N. Uppugundla, et al., A comparative study of ethanol production using dilute acid, ionic liquid and
AFEX™ pretreated corn stover, Biotechnology for Biofuels, 2014
V. Balan, et al., Current challenges in commercially producing biofuels from lignocellulosic biomass,
ISRN Biotechnology, 2014
L. S. Parreiras, et al., Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant
Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEXTM pretreated corn
stover, PLOS ONE, 2014
D. Gao, et al., Lignin triggers irreversible cellulase loss during pretreated lignocellulosic biomass
saccharification, Biotechnology for Biofuels, 2014
S. Karkehabadi, et al., Biochemical characterization and crystal structures of a fungal family 3 βglucosidase, Cel3A from Hypocrea jecorina, Journal of Biological Chemistry, 2014
D. H. Keating, et al., Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder
bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and
detoxification, Frontiers in Microbiology, 2014
T. P. Wyche, et al., Forazoline A: Marine-derived polyketide with antifungal in vivo efficacy,
Angewandte Chemie , 2014
K. McGlew, et al., An annotated database of Arabidopsis mutants of acyl lipid metabolism, Plant Cell
Reports, 2014
C. Niculaes, et al., Phenylcoumaran benzylic ether reductase prevents accumulation of compounds
formed under oxidative conditions in poplar xylem, The Plant Cell, 2014
D. J. Yelle, et al., A highly diastereoselective oxidant contributes to ligninolysis by the white rot
basidiomycete Ceriporiopsis subvermispora, Applied and Environmental Microbiology, 2014
D. L. Gall, et al., A group of sequence-related sphingomonad enzymes catalyzes cleavage of beta-aryl
ether linkages in lignin beta-guaiacyl and beta-syringyl ether dimers, Environmental Science &
Technology, 2014
Z. Xiang, et al., Emulsifying properties of an arabinoxylan–protein gum from distillers’ grains and the
co-production of animal feed, Cellulose, 2014
S. K. Truong, et al., Resolution of genetic map expansion caused by excess heterozygosity in plant
recombinant inbred populations, G3 (Bethesda), 2014
J. S. Luterbacher, et al., Targeted chemical upgrading of lignocellulosic biomass to platform
molecules, Green Chemistry, 2014
M. A. Mellmer, et al., Effects of gamma-valerolactone in hydrolysis of lignocellulosic biomass to
monosaccharides, Green Chemistry, 2014
A. Ulbrich, et al., Organic acid quantitation by NeuCode methylamidation, Analytical Chemistry, 2014
746.
747.
748.
749.
750.
751.
752.
753.
754.
755.
756.
757.
758.
759.
760.
Y.-K. Su, et al., Effects of aeration on growth, ethanol and polyol accumulation by Spathaspora
passalidarum NRRL Y-27907 and Scheffersomyces stipitis NRRL Y-7124, Biotechnology and
Bioengineering, 2014
X. Zhang, et al., Multi-scale geospatial agroecosystem modeling: A case study on the influence of soil
data resolution on carbon budget estimates, Science of the Total Environment, 2014
C. M. Kallenbach and A. Stuart Grandy, Land-use legacies regulate decomposition dynamics following
bioenergy crop conversion, GCB Bioenergy, 2014
Y. Tobimatsu, et al., A click chemistry strategy for visualization of plant cell wall lignification, Chemical
Communications, 2014
J. K. Jensen, et al., Arabidopsis thaliana IRX10 and two related proteins from psyllium and
Physcomitrella patens are xylan xylosyltransferases, The Plant Journal, 2014
J. Gaskell, et al., Influence of populus genotype on gene expression by the wood decay fungus
Phanerochaete chrysosporium, Applied and Environmental Microbiology, 2014
H. Cao, et al., Structure and substrate specificity of a eukaryotic fucosidase from Fusarium
graminearum, Journal of Biological Chemistry, 2014
Z. Ye, et al., Enhancement of synthetic Trichoderma-based enzyme mixtures for Biomass conversion
with an alternative family 5 glycosyl hydrolase from Sporotrichum thermophile, Plos One, 2014
D. P. Woods, et al., PHYTOCHROME C is an essential light receptor for photoperiodic flowering in the
temperate grass, Brachypodium distachyon, Genetics, 2014
B. E. Dale and R. G. Ong, Design, implementation, and evaluation of sustainable bioenergy production
systems, Biofuels, Bioproducts and Biorefining, 2014
T. Skevas, et al., Integrating agricultural pest biocontrol into forecasts of energy biomass production,
Ecological Economics, 2014
L. H. Yang and C. Gratton, Insects as drivers of ecosystem processes, Current Opinion in Insect
Science, 2014
J. A. Lewis, et al., Genetic architecture of ethanol-responsive transcriptome variation in
Saccharomyces cerevisiae Strains, Genetics, 2014
J. Kim and J. L. Reed, Refining metabolic models and accounting for regulatory effects, Current
Opinion in Biotechnology, 2014
S. M. Ogle, et al., Quantifying greenhouse sources and sinks in cropland and grazing land systems,
Series Quantifying greenhouse gas fluxes in agriculture and forestry: Methods for entity-scale
inventory., 2014