Escherichia coli • Commensal found in large bowel in most mammals. • Certain strains may cause disease: – Urinary tract infections – Sepsis/meningitis – Diarrhea Diarrheagenic groups • • • • • • Enterotoxigenic E. coli (ETEC) Enteroinvasive E. coli (EIEC) Enteropathogenic E. coli (EPEC) Enteroaggregative E. coli (EAEC) Diffusely adherent E. coli (DAEC) Enterohemorrhagic E. coli (EHEC) – Escherichia coli O157:H7 EHEC • Group defined by those strains that produce shiga-toxin (Stx1, Stx2) and cause hemorrhagic colitis (HC) and/or hemolytic uremic syndrome (HUS). EHEC serotypes • O157:H7-50% • Non-O157 serotypes – – – – – – O26:H11-21% O111:NM-19% O103:H2-10% O121-8% O145-6% O45-6% Virulence factors • Shiga-like toxin – Stx1 and Stx2 – Main virulence factor – associated with HUS • Intimin – Mediates attachment • EHEC plasmid – Enterohemolysin – Catalase From: Whittam, T.S. 1998. Escherichia coli O157:H7 and other ShigaToxin producing E. coli strains. J.B. Kaper and A. D. O’Brien ed. Attaching and effacing (A/E) pathology Shiga Toxin • Encoded on Stx bacteriophage • Originally discovered in Shigella dysenteriae (Stx1like) • Multiple variants-Stx1, Stx2 (Stx2c, d, e, f, g) • AB-5 toxin (5 B components and one A component) Shiga Toxin • Toxin enters blood stream • 5 B subunits bind to GB3/CD77 glycolipid receptor (Kidney). • Translocates A subunit which is cleaved into an A1 peptide • A1 peptide has N-glycosidase activity that inhibits protein synthesis through cleavage of 28S ribosomal RNA. Disease associated with EHEC • Phase 1: Presymptomatic stage – Acquisition of infection • Ingestion of undercooked beef is major risk factor • Many other vehicles for infection and reservoirs: water, vegetables, other mammals, etc. • Very low infectious dose: 10-100 bacteria. – Incubation period • 1-10 days • Average ~4 days after ingestion Disease associated with EHEC • Phase 2: Symptomatic phase – Before bloody diarrhea • Cramp-like abdominal pains • Clingliness to a parent-lethargy • Irritability and vomiting – Bloody Diarrhea (82%; O157: 38%; non-O157) • Supportive therapy to monitor development of HUS • HUS (7%; O157: 1.5% non-O157) occurs on average day 6.5 after bloody diarrhea begins. Disease associated with EHEC • Phase 3: – Microangiopathic sequelae • Development of complete or incomplete HUS • Approximately 15% of children with culture confirmed EHEC. • Low platelet count is usually first sign of HUS • 3-5% mortality rate of patients with HUS Disease associated with EHEC • Phase 4: Postsymptomatic stage. – E. coli O157:H7 can be excreted for up to a month. – For a child to return to day care or school, it is recommended that that patient have two negative stool cultures beforehand. Laboratory Detection Methods • Culture methods-Sorbital MacConkey agar – Only detects O157:H7 – Does NOT detect other EHEC serotypes • Tests to detect shiga-toxin (detects all EHEC serotypes) – EIA (rapid kits available) – PCR (Test available at UNMC-Commercial kits) Public Health Questions-1997 • What is the prevalence of E. coli O157:H7 in persons with diarrhea? • What is the prevalence of non-O157:H7 STEC in persons with diarrhea? • Develop a shiga-toxin PCR test to detect shigatoxin from stool specimens. Test developed to use at NPHL. • Funding from LB-1206 Why ask these questions-1997 • Some clinical laboratories do not screen for O157:H7 in routine stool cultures. • No clinical laboratories screen for non-O157:H7 STEC. • Develop a cost-effective method to detect nonO157:H7 STEC from stools. Study Design • Collaborated with 9 regional clinical laboratories in Nebraska. • NPHL was sent (through NPHL courier system) stool samples from patients with diarrhea. • Analysis: – CT-SMAC culture – Meridian EHEC EIA – stx PCR Results -335 specimens were received from May 98-October 98 -5/9 laboratories had positive samples -14 samples were positive by at least one of the methods (4.2%) -Isolates from 13/14 positive samples were obtained -6/13: O157:H7 or O157:NM (1.8%) -7/13: non-O157 serotypes (2.1%) Conclusions of Nebraska Study -4.2% EHEC prevalence rate. -1.8% O157:H7 -2.2% non-O157:H7 -O111:NM, O26:H11, O145:NM, O103:H2 have previously been associated with HUS. -Two O111:NM isolates were indistinguishable by PFGE, which suggests a possible outbreak which was not detected. -Developed a shiga-toxin PCR test which is in use at the NPHL for physician use. Fey et al. 2000 EID Prevalence of other bacterial diarrheal diseases • • • • • • • Camplobacteriosis Salmonellosis Shigellosis E. coli O157 Yersiniosis Listeriosis Vibrio EHEC Treatment of EHEC • 71 children with culture confirmed O157 infection. – 9 patients had HUS – 10 patients were treated with antibiotics • 5/10 patients receiving antibiotics came down with HUS – 4/61 patients not receiving antibiotics came down with HUS. • Treatment is supportive, no antibiotics are given Wong et al. 2000 NEJM; 342 What is the current Nebraska state protocol? • All Microbiology laboratories should be performing shiga-toxin test on routine stool samples for bacterial pathogens. (CDC MMWR 2006) • If laboratory does not isolate STEC, then stool sample is sent to NPHL for STEC isolation. – Imperative for molecular epidemiology program Molecular Epidemiology Genomic “Bar Code” Fingerprinting 0 992523 4357 2 Assesses Relatedness of Different Isolates Is Strain “A” related to Strain “B” Typical questions addressed through molecular epidemiology • Are the Escherichia coli O157:H7 isolates obtained from beef the same “strain” as that obtained from the patient(s)? • Are the 7 MRSA isolates obtained from the ICU the same “strain?” • Pre- and post-treatment isolate…the same strain?? Methods used in Molecular Epidemiology • First Generation-Plasmid typing • Second Generation-Restriction enzymes and probes • Third Generation-PCR methods and PFGE • Fourth Generation-Sequencing methods PFGE Gold Standard in almost all cases when molecular epidemiology is in question PFGE-Pulsed-Field Gel Electrophoresis THE CHROMOSOME IS THE MOST FUNDAMENTAL MOLECULE OF IDENTITY IN THE CELL Molecular Epidemiology-NPHL • Escherichia coli O157:H7 • Salmonella, Campylobacter, Listeria. • Nosocomial-MRSA, VRE, Pseudomonas aeruginosa, Klebsiella pneumoniae and other enterics. E. coli O157:H7 Reporting procedure • Step 1--Compare PFGE patterns to Nebraska database –EC157x.001-EC157x.0240 Dice (Opt:1.50%) (Tol 1.5%-1.5%) (H>0.0% S>0.0%) [0.0%-98.3%] 100 95 90 PFGE-XbaI 85 80 75 PFGE-XbaI REF 6511 x.0185 REF 6528 x.0104 REF 6550 x.0055 REF 6463 x.0068 REF 6557 x.0188 REF 6443 x.0091 REF 6337 x.0175 REF 6576 x.0187 REF 6514 x.0155 REF 6666 x.0190 REF 6336 x.0174 REF 6510 x.0184 REF 6436 x.0180 REF 6313 x.0002 REF 6314 x.0002 REF 6312 x.0002 REF 6398 x.0181 REF 6405 x.0002 REF 6603 x.0189 REF 6537 x.0186 REF 6433 x.0179 REF 6411 x.0099 REF 6421 x.0177 REF 6373 x.0182 REF 6403 x.0176 REF 6431 x.0178 REF 6489 x.0183 REF 6498 x.0183 REF 6542 Reporting procedure • Step 2: Compare Nebraska PFGE pattern with National database at Centers for Disease Control and Prevention (CDC) – Every state laboratory performs PFGE in identical manner—standardized protocol. Detects inter-and intrastate outbreaks. Program called Pulsenetmanaged by CDC Reporting procedure • Step 3--Send Report to epidemiologists at State level as well as Douglas and Lancaster County – – – – Name, PFGE pattern, site/date of isolation Has the PFGE pattern been seen in Nebraska recently? Has the PFGE pattern been seen ever in Nebraska? Has the PFGE pattern been seen in the US within the last 60 days? – The NPHL receives information from epidemiologists office regarding epidemiological information. Top 5 E. coli O157:H7 PFGE patterns Dice (Opt:1.50%) (Tol 1.5%-1.5%) (H>0.0% S>0.0%) [0.0%-98.3%] 100 95 PFGE-XbaI 90 85 80 PFGE-XbaI REF 2781 x.0004 REF 5144 x.0117 REF 5500 x.0048 REF 5804 x.0082 REF 5833 x.0055 2006 fresh spinach outbreak 1-4 5-9 10-14 > 15 -199 person infected from 26 states -102 were hospitalized (51%) 3 deaths (one from Nebraska) -31 (16%) developed HUS -Both O157:H7 and O26:H11 isolated from ill patients and spinach Richard Goering, Ph.D. Creighton University