I. Name __________________________________________ Date _____________________ Block ___________ Biotechnology Virtual Labs DNA Extraction Introduction: DNA is extracted from human cells for a variety of reasons. With a pure sample of DNA you can test a newborn for a genetic disease, analyze forensic evidence, or study a gene involved in cancer. Try this virtual laboratory to perform a cheek swab and extract DNA from human cells. Follow the online directions to complete the lab, answer the questions listed below as you work, and most of all have fun! Directions: 1. Go to the website http://learn.genetics.utah.edu (Use Firefox, a. Please make sure your sound is on LOW. If you have headphones, you may wear them! 2. On the leftâhand side of the screen, click on “DNA EXTRACTION” listed under “Virtual Labs.” 3. Click on “START LAB” and follow the prompted directions! Questions Corresponding with the Virtual Lab: 1. What are three reasons why someone might need to isolate DNA? a. _________________________________________________________________________ b. _________________________________________________________________________ c. _________________________________________________________________________ 2. Complete the following statement: We need cells because that’s where the ___________ is. 3. Inside almost every cell in our body is a __________________, and inside each nucleus is about ____________________________________________. What kind of cells are we using in this virtual experiment?_____________________ What are the four main steps in purifying DNA from a cheek cell? ______________________ b. ____________________________c. _____________________ d. ____________________________________ Lysis is a Greek word that means ___________________________. What is the purpose of adding the detergent to the skin cells? ____________________________ What protein is DNA wrapped very tightly around? _______________________________ What is the purpose of the salt in this experiment? __________________________________ 4. 5. a. 6. 7. 8. 9. 10. In this virtual lab, they utilize a centrifuge. (We don’t have this in our lab ) Very simply, what does this machine do? ____________________________________________________ 11. What is the purpose of adding the isopropyl alcohol? (What does it do?) ____________________ 12. How long can this newly isolated DNA last? _________________________________________ II. DNA Fingerprinting / Gel Electrophoresis Virtual Lab Go to the following website: http://learn.genetics.utah.edu/content/labs/gel/ 1. What is the purpose of Gel Electrophoresis? ________________________________ 2. Why would someone perform a Gel Electrophoresis test? _____________________ 3. How are strands of DNA sorted ? _______________________________________ 4. Describe the “gel” that is used. ___________________________________________ 5. What goes into the holes at one end of the gel? _______________________ 6. Why is electricity used? _________________________________________________ 7. What type of strand of DNA move through the agar the fastest? ________________ 8. List the steps of Gel Electrophoresis Step 1:_______________________________________________ Step 2:_______________________________________________ Step 3:_______________________________________________ Step 4:_______________________________________________ Step 5:_______________________________________________ 9. Complete the Virtual lab – drag items as directed. 10. Why is a microwave used? __________________________________ 11. What is the purpose of the comb that is placed in one end of the gel? ____________ 12. What is the purpose of the buffer? ___________________________ 13. What proof do you have that the electrodes are working and the current is working? __________________________ 14. Below if a sample from the crime scene and samples from suspects. Based on the DNA fingerprint, who committed the crime? _____________________________ In this hypothetical paternity case, four autoradiographs show DNA "fingerprints" taken from three individuals: a mother, her child, and the child's alleged father. Each autoradiograph compares equivalent DNA segments from the three individuals. The two dark bands in each column represent one individual's DNA segments -- one inherited from that individual's biological mother and the other from the biological father. These segments differ in length from person to person; for this reason they are used as genetic markers. Here, each length is designated by a letter, A through O. The two letters associated with each segment indicate the individual's genotype. Instructions Under each column in the autoradiograph, write the letters associated with each individual's genotype. For example, the genotype of the mother in the first column is A/D. Then, circle the letter in the child's genotype that represents the gene inherited from the mother. 1. Which "letter" must the child have inherited from its father? _C_____, _1.____, 2._____, 3.___ 2. Based on this information, what evidence suggests that the alleged father could be biologically related to the child? 1 2 3 **According to the University of Utah, this genetic test based on four markers indicates that there is more than a 99 percent probability that the alleged father is the child's biological parent. Because statistical calculations prevent a 100 percent probability of paternity, most courts accept a probability of 99.5 percent or greater as evidence of paternity. An "exclusion" result, where the patterns do not match between a child and the alleged father, is unequivocal evidence of non-paternity. Remind students that genetic tests can only absolutely disprove, not prove, relationship III. Recombinant DNA / Transgenic DNA Go to the following website “The DNA Learning Center: http://www.dnalc.org/view/15915-The-firstrecombinant-DNA.html 1. Stanley Cohen and Herbert Boyer worked to __________________ genes from different bacteria into one _______ molecule. Where did they get the genes to do this? _________________________ 2. What is a plasmid? _________________________________________________________ 3. Draw a plasmid. 4. What did Cohen and Boyer add to cut part of the plasmid _______________ _______________ or EcoRI to make sticky ends. 5. Genetic engineering processes can make human insulin. Human insulin DNA is placed into the DNA of a second organism. The host organism becomes an insulin-producing factory. People with diabetes (called diabetics) do not correctly produce or use their insulin protein. The insulin protein helps control how much sugar is in your bloodstream. Millions of diabetics need to take insulin. Insulin from cows and pigs has been used since the early 1900s to treat diabetes. Now human insulin protein can be mass-produced through genetic engineering processes. Go to the following website: http://www.iptv.org/exploremore/ge/what/insulin.cfm#1 Move your curser over each picture. Fill in the steps 1. _____________ Gene The gene for producing HUMAN insulin protein is isolated 2. _____________ Target DNA First, a circular piece of DNA called a plasmid is removed from a bacterial cell. Special proteins are used to cut the plasmid ring open. 3. Insert the DNA into __________________. With the plasmid ring open, the gene for insulin is inserted into the plasmid ring and the ring is closed. 4. Insert ______________ back into cell. The bacterial DNA now contains the human insulin gene and is inserted into a bacteria. Scientists use very small needle syringes to move the recombined plasmid through the bacterial cell membrane. 5. Plasmid __________________. Many plasmids with the insulin gene are inserted into many bacterial cells. The cells need nutrients in order to grow, divide, and live. While they live, the bacterial cell processes turn on the gene for human insulin and the insulin is produced in the cell. When the bacterial cells reproduce by dividing, the human insulin gene is also reproduced in the newly created cells. 6. Target Cells _____________________. Human insulin protein molecules produced by bacteria are gathered and purified. The process of purifying and producing cow and pig insulin has been greatly reduced or eliminated 7. Cell Produce ____________________. Millions of people with diabetes now take human insulin produced by bacteria or yeast (biosynthetic insulin) that is genetically compatible with their bodies, just like the perfect insulin produced naturally in your body IV. Cloning - Clone a mouse! Go to the following website: http://learn.genetics.utah.edu/content/tech/cloning/clickandclone/ 1. 2. 3. 4. What is a clone? __________________________________________________________________ What is a somatic cell? _____________________________________________________________ What makes a somatic cell different from a sex cell (gamete)? _____________________________ Begin the lab – List the 6 main steps to cloning. 1. ________________________________ 2. ___________________________ 3.__________________________________ 4. ___________________________ 5. __________________________________6. ___________________________ 5. Describe how you removed the nucleus from the egg cell _______________________________________ ________________________________________________________________________________________ 6.What did you do with the nucleus of the somatic cell? ____________________________________ 7. Why is a microscope necessary to remove the nucleus? ___________________________________ 8. Is this new egg haploid or diploid? ________________, explain why this is not your typical “egg” cell now. _____________________________________________________________________________ 9. What process will this new cell use to divide to develop into a mouse? _______________________ 10. What is a ball of cells called (about 16 cells)? _____________________________ 11. Once the cells develop into an embryo where did you implant it? ______________________ 12. Can scientist really produce clones of mice? ____________, When was the first cloned mouse made? ____________________. Go to the following website: http://www.roslin.ed.ac.uk/public-interest/dolly-the-sheep/a-life-of-dolly/ 13. Who was Dolly? _________________________________________________ 14. List two interesting facts about Dolly. ______________________________________________________________________________ ______________________________________________________________________________ 15. How did Dolly’s life end? _________________________________________________________ Resource: Genetic Science Learning Center (2012, August 6) Click and Clone. Learn.Genetics. Retrieved November 14, 2012, from http://learn.genetics.utah.edu/content/tech/cloning/clickandclone/ V. Stem Cell Go to the following website http://learn.genetics.utah.edu/content/tech/stemcells/scfuture/ Click on each “slide” and answer the questions? 1. What is regeneration? ___________________________________________________________ 2. What organisms can regenerate limbs? _____________________________________________ 3. Can Humans regenerate? ___________________________________how? ________________ _____________________________________________________________________________ 4. How are drugs showing promise with stem cell research(5/15)? ______________________________ _____________________________________________________________________________ 5. What’s an advantage of using embryonic cells over other types of stem cells? (6-8/15)? _____________________________________________________________________________ 6. What organs are being made with stem cells (9/15)? __________________________________ 7. What is gene therapy(10-13/15)? __________________________________________________________ __________________________________________________________________________________