5 Cells: The Working Units of Life Figure 4.15 The Origin of Life 5.1 What Features Make Cells the Fundamental Units of Life? Cell theory was the first unifying theory of biology. • Cells are the fundamental units of life • All organisms are composed of cells • All cells come from preexisting cells 5.1 What Features Make Cells the Fundamental Units of Life? Implications of cell theory: • Life is continuous: all cells are derived from pre-existing cells • Origin of life was the origin of cells 5.1 What Features Make Cells the Fundamental Units of Life? Cellule membrane water + thousand of molecules used to • transform matter and energy • respond to their environments • reproduce 5.1 What Features Make Cells the Fundamental Units of Life? The plasma membrane is the outer surface of every cell, and has more or less the same structure in all cells. It is made of a phospholipid bilayer with proteins and other molecules embedded. It is not rigid, but more like an oily fluid in which the proteins and lipids are in constant motion. ! 5.1 What Features Make Cells the Fundamental Units of Life? Cellule membrane water + thousand of molecules used to • transform matter and energy • respond to their environments • reproduce Figure 5.1 The Scale of Life (Part 2) Figure 5.1 The Scale of Life (Part 1) 5.1 What Features Make Cells the Fundamental Units of Life? Two basic types of microscopes: Light microscopes—use glass lenses and light. Resolution = 0.2 µm => Visualisation of cells and some internal structures Electron microscopes—electromagnets focus an electron beam. Resolution = 0.2 nm => Visualisation of subcellular structures Figure 5.3 Looking at Cells (Part 1) Figure 5.3 Looking at Cells (Part 3) 5.1 What Features Make Cells the Fundamental Units of Life? Cellule membrane water + thousand of molecules used to • transform matter and energy • respond to their environments • reproduce 5.1 What Features Make Cells the Fundamental Units of Life? Two types of cells: Prokaryotic and eukaryotic Bacteria and Archaea are prokaryotes. The first cells were probably prokaryotic. Eukarya are eukaryotes—the DNA is in a membrane-enclosed compartment called the nucleus. 5.2 What Features Characterize Prokaryotic Cells? Prokaryotic cells are very small. Individuals are single cells, but often found in chains or clusters. Prokaryotes are very successful—they can live on a diversity of energy sources and some can tolerate extreme conditions. http://www.larousse.fr/encyclopedie/data/cartes/1309193-Classification_des_espèces_vivantes.HD.jpg prokaryotes http://www.larousse.fr/encyclopedie/data/cartes/1309193-Classification_des_espèces_vivantes.HD.jpg Figure 5.4 A Prokaryotic Cell 5.2 What Features Characterize Prokaryotic Cells? Prokaryotic cells: • Are enclosed by a plasma membrane • The DNA is contained in the nucleoid • Cytoplasm comprise the rest of the cell’s content (water, biomolecules and ribosomes) • Ribosomes—sites of protein synthesis 5.2 What Features Characterize Prokaryotic Cells? Most prokaryotes have a rigid cell wall outside the plasma membrane. Bacteria cell walls contain peptidoglycan. Some bacteria have an additional outer membrane. Some prokaryotes swim by means of flagella, made of the protein flagellin. Some bacteria have pili—hairlike structures projecting from the surface. They help bacteria adhere to other cells. Figure 5.5 Prokaryotic Flagella (Part 1) eukaryotes http://www.larousse.fr/encyclopedie/data/cartes/1309193-Classification_des_espèces_vivantes.HD.jpg 5.3 What Features Characterize Eukaryotic Cells? Eukaryotic cells are up to ten times larger than prokaryotes. Eukaryotic cells have membraneenclosed compartments called organelles. Each organelle has a specific role in cell functioning. Figure 5.7 Eukaryotic Cells (Part 1) Figure 5.7 Eukaryotic Cells (Part 1) 5.3 What Features Characterize Eukaryotic Cells? The nucleus is usually the largest organelle. • Contains the DNA • Site of DNA replication • Site where gene transcription is turned on or off • Assembly of ribosomes begins in a region called the nucleolus Figure 5.8 The Nucleus Is Enclosed by a Double Membrane (Part 1) 5.3 What Features Characterize Eukaryotic Cells? The nucleus is surrounded by two membranes—the nuclear envelope. Nuclear pores in the envelope control movement of molecules between nucleus and cytoplasm. Figure 5.8 The Nucleus Is Enclosed by a Double Membrane (Part 2) Some large molecules (e.g., proteins) must have a certain amino acid sequence known as a nuclear localization signal (NLS) to cross the nuclear envelope. 5.3 What Features Characterize Eukaryotic Cells? In the nucleus, DNA combines with proteins to form chromatin in long, thin threads called chromosomes. Before cell division, chromatin condenses, and individual chromosomes are visible in the light microscope. Figure 5.9 Chromatin and Chromosomes Figure 5.7 Eukaryotic Cells (Part 1) 5.3 What Features Characterize Eukaryotic Cells? The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, and lysosomes. Tiny, membrane-surrounded vesicles shuttle substances between the various components. Figure 5.10 The Endomembrane System (Part 2) 5.3 What Features Characterize Eukaryotic Cells? Endoplasmic reticulum (ER): network of interconnected membranes in the cytoplasm; has large surface area. Rough endoplasmic reticulum (RER): ribosomes are attached. Newly made proteins enter the RER lumen where they are modified, folded, and transported to other regions. http://www.mhhe.com/biosci/genbio/enger/student/olc/art_quizzes/genbiomedia/0064.jpg 5.3 What Features Characterize Eukaryotic Cells? Ribosomes—sites of protein synthesis. Ribosomes consist of ribosomal RNA (rRNA) and more than 50 different protein molecules. In eukaryotes, ribosomes are free in the cytoplasm, attached to the endoplasmic reticulum, or inside mitochondria and chloroplasts. In prokaryotic cells, ribosomes float freely in the cytoplasm. Figure 5.10 The Endomembrane System (Part 2) 5.3 What Features Characterize Eukaryotic Cells? The Golgi apparatus is composed of flattened sacs and small membraneenclosed vesicles. • Receives proteins from the RER—can further modify them • Concentrates, packages, sorts proteins Figure 5.10 The Endomembrane System (Part 2) The Golgi receives vesicles (a piece of the ER that “buds” off) from the ER. Vesicles bud off from the Golgi apparatus and are moved to the plasma membrane or other organelles. Figure 5.11 Lysosomes Isolate Digestive Enzymes from the Cytoplasm (Part 1) lysosomes originate from the Golgi apparatus. They contain digestive enzymes— macromolecules are hydrolyzed into monomers. Figure 5.7 Eukaryotic Cells (Part 1) 5.3 What Features Characterize Eukaryotic Cells? In the mitochondria, energy in fuel molecules is transformed into energyrich ATP with O2: Cellular respiration. Cells that require a lot of energy have a lot of mitochondria. Figure 5.7 Eukaryotic Cells (Part 1) 5.3 What Features Characterize Eukaryotic Cells? The cytoskeleton: • Supports and maintains cell shape • Holds organelles in position • Moves organelles • Involved in cytoplasmic streaming Figure 5.17 The Cytoskeleton Figure 5.7 Eukaryotic Cells (Part 3) 5.3 What Features Characterize Eukaryotic Cells? Chloroplasts: Site of photosynthesis—light energy is converted to the energy of chemical bonds Chloroplasts have a double membrane like mitochondria Figure 5.7 Eukaryotic Cells (Part 3) 5.3 What Features Characterize Eukaryotic Cells? Plant and protist cells have vacuoles: • Store waste products and toxic compounds; some may dissuade herbivores • Provide structure for plant cells—water enters the vacuole by osmosis, creating turgor pressure. Figure 5.24 The Plant Cell Wall 5.5 How Did Eukaryotic Cells Originate? Some organelles may have arose by symbiosis (“living together”). The endosymbiosis theory proposes that mitochondria and chloroplast arose when one cell engulfed another cell. Figure 5.26 The Origin of Organelles (B) image of Bacillus subtilis cells in an early stage of biofilm formation http://www.cell.com/cell_picture_show-biofilms cytoskeleton http://upload.wikimedia.org/wikipedia/commons/0/09/FluorescentCells.jpg Neurons in cerebral cortex of a six day old rat http://www.nikonsmallworld.com/subjects/image/neuron/1 A collage of a wide variety of mammalian cells http:// www.microscopyu .com/smallworld/ gallery/contests/ 2011/photos/ winners/19-2011large.jpg 5 Cell Membranes Figure 3.20 Phospholipids (Part 2) Figure 6.1 The Fluid Mosaic Model 6.1 What Is the Structure of a Biological Membrane? The general structure of membranes is known as the fluid mosaic model. Phospholipids form a bilayer which is like a “lake” in which a variety of proteins “float.” 6.1 What Is the Structure of a Biological Membrane? Membranes may vary in lipid composition. Phospholipids vary in fatty acid chain length, degree of saturation, and phosphate groups. Membranes may be up to 25 percent cholesterol. 6.1 What Is the Structure of a Biological Membrane? Membranes also contain proteins; the number of proteins varies with cell function. Two types of membrane proteins: • Peripheral membrane proteins lack exposed hydrophobic groups and do not penetrate the bilayer. • Integral membrane proteins have hydrophobic and hydrophilic regions or domains. Figure 6.3 Interactions of Integral Membrane Proteins 6.1 What Is the Structure of a Biological Membrane? The proteins and lipids in the membrane are independent and only interact noncovalently. 6.1 What Is the Structure of a Biological Membrane? Membranes are dynamic and are constantly forming, transforming, fusing, and breaking down. 6.1 What Is the Structure of a Biological Membrane? Membranes also have carbohydrates on the outer surface that serve as recognition sites for other cells and molecules. Glycolipids—carbohydrate + lipid Glycoproteins—carbohydrate + protein 6.3 What Are the Passive Processes of Membrane Transport? Membranes have selective permeability— some substances can pass through, but not others. Passive transport—no outside energy required (diffusion). Active transport—energy required. 6.3 What Are the Passive Processes of Membrane Transport? Simple diffusion: Small molecules pass through the lipid bilayer. Lipid-soluble molecules can diffuse across the membrane. Electrically charged and polar molecules can not pass through easily. 6.3 What Are the Passive Processes of Membrane Transport? Facilitated diffusion of polar molecules (passive): • Channel proteins have a central pore lined with polar amino acids. • Carrier proteins—membrane proteins that bind some substances and speed their diffusion through the bilayer. 6.3 What Are the Passive Processes of Membrane Transport? Ion channels: Specific channel proteins with hydrophilic pores. Most are gated—can be closed or open to ion passage. Gate opens when protein is stimulated to change shape. Stimulus can be a molecule (ligand-gated) or electrical charge resulting from many ions (voltage-gated). Figure 6.11 A Gated Channel Protein Opens in Response to a Stimulus 6.3 What Are the Passive Processes of Membrane Transport? All cells maintain an imbalance of ion concentrations across the plasma membrane; thus a small voltage potential exists. Rate and direction of ion movement through channels depends on the concentration gradient and the distribution of electrical charge. Figure 6.14 A Carrier Protein Facilitates Diffusion (Part 1) 6.4 What Are the Active Processes of Membrane Transport? Active transport: Moves substances against a concentration and/or electrical gradient—requires energy. The energy source is often adenosine triphosphate (ATP). Figure 6.15 Three Types of Proteins for Active Transport • Uniporters • Symporters • Antiporters Figure 6.16 Primary Active Transport: The Sodium–Potassium Pump 6.5 How Do Large Molecules Enter and Leave a Cell? Macromolecules (proteins, polysaccharides, nucleic acids) are too large to cross the membrane. They can be taken in or secreted by means of membrane vesicles. Figure 6.18 Endocytosis and Exocytosis (A) Endocytosis: Processes that bring molecules and cells into a eukaryotic cell. The plasma membrane folds around the material, forming a vesicle. 5.1 What Features Make Cells the Fundamental Units of Life? The plasma membrane: • Is a selectively permeable barrier • Allows cells to maintain a constant internal environment • Is important in communication and receiving signals • Often has proteins for binding and adhering to adjacent cells