Presentation MEDIA: Genetics & Evolution Series Population Genetics Set No. 6 Set 6: Population Genetics Presentation MEDIA © 1993-2001 Biozone International Ltd ISBN 0-909031-45-2 Index to OHT Titles OHT Title OHT Title 1 Species 24 Genetic Drift Patterns 2 Populations 25 Population Bottlenecks 1 3 Gene Pool 26 Population Bottlenecks 2 4 Analysing a Gene Pool 27 Population Bottleneck in Cheetahs 5 Determining Allele Frequencies 28 The Founder Effect 1 6 Determining Genotype Frequencies 29 The Founder Effect 2 7 Changes in a Gene Pool 1 30 Natural Selection 8 Changes in a Gene Pool 2 31 Assortative Mating 9 Changes in a Gene Pool 3 32 Modes of Natural Selection 10 Hardy-Weinberg Equilibrium: An Introduction 33 Stabilising Selection 1 11 Conditions Required for Hardy-Weinberg Equilibrium 34 Stabilising Selection 2 35 Stabilising Selection in Human Birth Weights 12 Derivation of the Hardy-Weinberg Equation 36 Directional Selection 1 13 The Hardy-Weinberg Equation 37 Directional Selection 2 14 How to Solve Hardy Weinberg Problems 38 Natural Selection in Peppered Moths 1 15 Hardy-Weinberg Problem: A Worked Example 39 Peppered Moths 2 16 Changing Allele Frequencies 40 Peppered Moths 3 17 Mutations 41 Disruptive Selection 1 18 Gene Flow 42 Disruptive Selection 2 19 The Effect of Population Size 43 Heterozygote Advantage 20 Genetic Drift 44 Sickle Cell and Malaria 21 Genetic Drift Example 1 45 Hybrid Vigor 22 Genetic Drift Example 2 46 Artificial Selection in Brassica 23 Genetic Drift Example 3 47 Artificial Selection in Dogs NEW ZEALAND: Biozone International Ltd P.O. Box 13-034 Hamilton Telephone: +64 (7) 856-8104 FAX: +64 (7) 856-9243 E-mail: info@biozone.co.nz AUSTRALIA: Biozone Learning Media Australia P.O. Box 7523 GCMC 4217 QLD Telephone: +61 (7) 5575-4615 FAX: +61 (7) 5572-0161 E-mail: info@biozone.com.au UNITED KINGDOM: Biozone Learning Media (UK) P.O. Box 16710, Glasgow G12 9WS Telephone: +44 (141) 337-3355 FAX: +44 (141) 337-2266 E-mail: info@biozone.co.uk Species A biological species is a grouping of organisms that can interbreed and are reproductively isolated from (i.e. cannot breed with) other interbreeding groups. Species are usually recognised on the basis of their morphology (size, shape, and appearance). For example, there are over 200 species of turtles, which are different in appearance and do not interbreed: Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 1 Populations From a population genetics viewpoint: 1. A population comprises the total number of a species inhabiting a particular geographical area. 2. All members of a population have the potential to interact with each other. This includes breeding. Populations can be very large and occupy a large area, with fairly continuous distribution. Populations may also be limited in their distribution and exist in isolated pockets or “islands”, cut off from other populations of the same species. Fragmented Distribution Example: Some frog species Continuous Distribution Example: Arctic tundra plant species Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 2 Gene Pool Definition of a Gene Pool: The sum total of all the genes present in a population at any one time. Not all the individuals will be breeding at a given time. The population may have a distinct geographical boundary. Each individual is a carrier of part of the total genetic complement of the population. Geographic boundary of gene pool Individual with a homozygous recessive condition Aa Aa aa Individual with a heterozygous condition AA AA AA Aa Aa Aa aa Aa aa Individual with a homozygous dominant condition AA AA aa AA A gene pool made up of 16 individual organisms with gene A, and where gene A has two alleles Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 3 Analysing a Gene Pool By determining the frequency of allele types (e.g. A and a) and genotypes (e.g. AA, Aa, and aa) it is possible to determine the state of the gene pool. The state of the gene pool will indicate if it is stable or undergoing change for some reason – an important indicator that evolutionary events may be taking place. There are twice the number of alleles for each gene as there are individuals, since each individual has two alleles. Aa Aa aa AA AA Aa Aa Aa EXAMPLE The small gene pool above consists of 8 individuals. Each individual has 2 alleles for a single gene A, so there are a total of 16 alleles in the population. There are individuals with the following genotypes: Homozygous dominant (AA) Heterozygous (Aa) Homozygous recessive (aa) Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 4 Determining Allele Frequencies Count up the respective numbers of dominant and recessive alleles in the total population, regardless of the combinations in which they occur: Convert these to percentages by: No. of Dominant Alleles Total No. of Alleles Aa Aa aa AA Aa Aa aa AA Aa AA Aa Aa Aa Frequency of Dominant Allele There are 9 dominant alleles out of a total of 16: A = 9/16 x 100 = 56.25% Aa AA X 100 Aa Frequency of Recessive Allele There are 7 recessive alleles out of a total of 16: a = 7/16 x 100 = 43.75% Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 5 Determining Genotype Frequencies Count up the actual number of each genotype in the population: homozygous dominant (AA), heterozygous (Aa) and homozygous recessive (aa). Aa Aa aa AA Aa Aa aa AA Aa Aa aa AA Aa AA Aa Aa Aa AA Aa Aa Aa AA = 2/8 x 100 = 25% Heterozygous Frequency There are 5 heterozygous genotypes out of a total of 8: Aa = 5/8 x 100 = 62.5% Aa AA Homozygous Dominant Frequency There are 2 homozygous dominant genotypes out of a total of 8: Aa Homozygous Recessive Frequency There is 1 homozygous recessive genotype out of a total of 8: AA = 1/8 x 100 = 12.5% Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 6 Changes in a Gene Pool 1 Phase 1: Initial Gene Pool – In the gene pool below there are 25 individuals, each possessing two copies of a gene for a trait called A. – This is the gene pool before changes occur: Aa aa AA Aa Aa Aa AA AA Aa Aa Aa Aa Aa Aa aa Aa Aa AA AA AA Aa AA aa aa aa A a AA Aa aa No. 27 23 7 13 5 % 54 46 28 52 20 Allele Types Allele Combinations Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 7 Changes in a Gene Pool 2 Phase 2: Natural Selection In the same gene pool, at a later time, two pale individuals died due to the poor fitness of their phenotype: Two pale individuals died and therefore their alleles are removed from the gene pool Aa aa AA Aa Aa Aa aa Aa AA aa Aa Aa AA AA Aa Aa aa Aa AA Aa aa AA AA Aa Aa A a AA Aa aa No. 27 19 7 13 3 % 58.7 41.3 Allele Types 30.4 56.5 13.0 Allele Combinations Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 8 Changes in a Gene Pool 3 Phase 3: Immigration/Emigration At a still later time, one beetle joins the gene pool while another leaves: This individual is entering the population and will add its alleles to the gene pool AA Aa Aa aa AA aa This individual is leaving the population, removing its alleles from the gene pool Aa AA Aa Aa AA AA aa Aa Aa AA Aa AA Aa Aa Aa Aa AA Aa A a AA Aa aa No. 29 17 8 13 2 % 63 37 Allele Types 34.8 56.5 8.7 Allele Combinations Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 9 Hardy-Weinberg Equilibrium: An Introduction Populations are often stable (no phenotypic change) over many generations. The stability of many populations over time was explained by two scientists: G. Hardy an English mathematician W. Weinberg a German physician They formulated the Hardy-Weinberg law which mathematically describes the frequency of alleles in a sexually reproducing population. It shows that no matter how many times alleles are segregated by meiosis and recombined by fertilisation the allele frequency remains constant generation after generation – the alleles are just shuffled about within the breeding population. The population is in genetic equilibrium and no change in allele frequencies occurs over many generations. The equilibrium is only maintained in the absence of destabilising events. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 10 Conditions Required for Hardy-Weinberg Equilibrium The Hardy-Weinberg equilibrium is maintained if all the following “stabilising” conditions are met: 1. Large Population: The population size is large. 2. Random Mating: Every individual of reproductive age has an equal chance of finding a mate. 3. No Emigration / Immigration: There is no movement of individuals into or out of the population – no gene flow. 4. No Selection Pressure: All genotypes have an equal chance of reproductive success – no selection pressure. 5. No Mutation: There is no mutation to introduce new alleles. Natural populations seldom meet all these requirements and therefore allele frequencies will change. A permanent change in the allele frequencies in a population is termed microevolution. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 11 Derivation of the Hardy-Weinberg Equation The Hardy-Weinberg equation is applied to populations with a simple genetic situation: dominant and recessive alleles controlling a single trait. The frequency of all of the dominant alleles (A) and recessive alleles (a) equals the total genetic complement, and adds up to 1 or 100% of the alleles present. p represents the frequency of allele A while q represents the frequency of allele a in the population. Frequency of allele combination AA in the population Punnett Square p q p pp pq q qp qq Frequency of allele combination aa in the population Frequency of allele combination Aa in the population (add these together to get 2pq) Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 12 The Hardy-Weinberg Equation The Hardy-Weinberg equilibrium can be expressed mathematically by giving the frequency of all the allele types in the population: Frequency of allele combination: AA (homozygous dominant) Frequency of allele combination: Aa (heterozygous) Frequency of allele: a Frequency of allele combination: aa (homozygous recessive) Frequency of allele: A 2 (p + q) = Frequency of Allele Types 2 2 p + 2pq + q = 1 Frequency of Allele Combinations The sum of all the allele types: A and a = 1 (or 100%) The sum of all the allele combinations: AA, Aa and aa = 1 (or 100%) Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 13 How to Solve Hardy-Weinberg Problems The following steps outline the procedure for solving a Hardy-Weinberg problem: 1. Examine the question and determine what information you have been given about the population. In most cases, it is the percentage or frequency of the recessive phenotype (q2) or the dominant phenotype (p2 2pq). These provide the only visible means of gathering data about the gene pool. 2. The first objective is to find out the value of p or q. If this is achieved, then every other value in the equation can be determined by simple calculation. If necessary q2 can be obtained by calculating: 1 – frequency of the dominant phenotype 3. Take the square root of q2 to find q 4. Determine p by subtracting q from 1 (i.e. p = 1 – q) 5. Determine p2 by multiplying p by itself (i.e. p2 = p x p) 6. Determine 2pq by multiplying p times q times 2 7. Check your calculations by adding p2 + 2pq + q2 always equal 1. – these should Remember that all calculations must be carried out using decimal fractions – NOT PERCENTAGES! Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 14 Hardy-Weinberg Problem: A Worked Example Approximately 70% of caucasian Americans can taste the chemical called P.T.C. (the dominant phenotype) while 30% are non-tasters (the recessive phenotype). Data Provided: Frequency of the dominant phenotype p = 70% or 0.7 Frequency of the recessive phenotype q = 30% or 0.3 Working Recessive phenotype: therefore: therefore: q2 q p = 0.30 = 0.5477 (square root of 0.30) = 0.4522 (1 – q = p) (1 – 0.5477 = 0.4522) Now use p and q in the equation to solve any unknown: Homozygous Dominant: p2 = 0.2045 (0.4522 x 0.4522) Heterozygous: 2pq = 0.4953 (2 x 0.4522 x 0.5477) The frequency of: (a) Homozygous recessive phenotype = q2 (b) Dominant allele =p (c) Homozygous tasters (d) Heterozygous tasters = 30% = 45.2% = 20.5% = p2 = 2pq = 49.5% Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 15 Changing Allele Frequencies Gene pools are subjected to a number of processes that can alter the frequency of alleles for a gene: 1. Mutation 2. Gene flow (immigration and emigration) 3. Small population size and genetic drift 4. Natural selection 5. Non-random mating Some of these processes cause random changes, others may be directional (i.e. they favour some alleles at the expense of others). Mate Selection aa Mutations Immigration Aa Aa AA AA Emigration A'A Aa AA aa AA Aa Aa AA Aa AA Aa aa Aa Aa AA Aa aa Boundary of gene pool Natural Selection Gene Flow Geographical Barrier Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 16 Mutations Mutations are the source of all new alleles. Mutations can therefore change the frequency of existing alleles by competing with them. Recurrent spontaneous mutations may become common in a population if they are not harmful and are not eliminated. New recessive allele Aa In the graph below, a mutation creates a new recessive allele: a' Aa a'a The frequency of this new allele increases when environmental conditions change, giving it a competitive advantage over the other recessive allele: a AA Aa AA aa aa Aa Aa AA aa AA Aa aa Aa Aa AA AA Aa 1.0 Environmental conditions change 0.9 Allele Frequency 0.8 0.7 A 0.6 0.5 0.4 0.3 0.2 0.1 0 a' Mutation causes the formation of a new recessive allele 5 0 a 10 15 20 Generations Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 17 Gene Flow Gene flow is the movement of genes into or out of a population: immigration and emigration. A population may gain or lose alleles through gene flow. Gene flow tends to reduce the differences between populations because the gene pools become more similar. Barriers to gene flow Aa AA Aa Aa AA Aa AA AA AA aa aa AA AA Aa Aa AA Aa Aa AA Aa AA Aa AA Aa Aa Aa AA aa Population B Population C Emigration out of population B AA AA Aa Aa Aa AA aa AA AA Aa AA aa Aa Aa AA Aa aa AA AA Immigration into population B AA Aa Aa aa Aa Aa Aa No Gene Flow Aa AA aa aa aa Aa Aa Aa Aa aa AA aa Aa aa Aa AA Population A AA Aa aa Aa aa Aa AA aa Aa aa aa Aa AA Aa AA Aa aa Aa Aa Aa Aa aa AA aa Aa aa Aa Gene Flow AA Aa AA Population A aa Aa Population B Aa aa Aa aa AA AA aa Aa Population C Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 18 The Effect of Population Size Large populations have more stable allele frequencies because they have a greater reservoir of variability and are less affected by changes involving only a few individuals. Small populations have fewer alleles to begin with and so the severity and speed of changes in the allele frequencies are greater. Endangered species with very low population numbers may be subjected to severe and rapid allele changes. Aa aa Aa Aa aa Aa aa Aa Aa Aa AA aa Aa Aa Aa Aa Aa aa aa Aa Aa Aa Aa Aa AA Aa Small Population Aa Aa Aa Aa Aa Aa aa Aa AA Aa AA aa Aa Aa Aa AA AA AA Aa Aa AA Aa aa aa Large Population Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 19 Genetic Drift Not all individuals, for various reasons, will be able to contribute their genes to the next generation. Genetic drift refers to random changes in allele frequencies that occur in all populations, although having the most pronounced effects on small populations. In small inbreeding populations, alleles may become: 1. Lost from the gene pool altogether (frequency becomes 0%) 2. Fixed as the only allele present in the gene pool (frequency becomes 100%) Genetic drift is often a feature of small populations that become isolated from the larger population gene pool (as for example with island colonisers). The next 3 OHTs show a hypothetical gene pool of a small population over three generations: – For various reasons, not all individuals are contributing their alleles to the next generation. – With the random loss of the alleles carried by these individuals, the allele frequency changes from one generation to the next. – The change in frequency is ‘directionless’ as there is no selecting pressure. – The allele combinations for each successive generation are determined by how many alleles of each type 'survive' and are passed on from the preceding one. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 20 Genetic Drift Example 1 Generation 1: Two of the beetles fail to locate a mate due to the sparse distribution of the population. There was no other reason for them not to find a mate and this factor alone prevented them from contributing their genes to the next generation. An example may be the sparsely distributed individuals of the Siberian tiger population. A = 16 (53%) a = 14 (47%) AA Aa Aa Aa aa AA Aa Aa Aa aa AA AA Aa Aa aa Fail to locate a mate due to low population density Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 21 Genetic Drift Example 2 Generation 2: Another two beetles fail to breed because they could not find a mate due to low population density. Two dark beetles were accidentally killed in a rock fall – this could equally have killed any beetle, it was not a test of the ‘fitness’ of the beetle’s phenotype. The effect this had on the gene pool was to reduce the dominant allele frequency from 53% to 50%: A = 15 (50%) a = 15 (50%) AA Aa Aa Aa aa AA Aa Aa Aa aa AA Aa Aa Aa aa Killed in a rock fall Fail to locate a mate due to low population density Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 22 Genetic Drift Example 3 Generation 3: A dark beetle was blown out to sea by very strong winds during a cyclone and died. Again this was not a true test of the ‘fitness’ of the phenotype but was due to chance. The effect on the gene pool was to further reduce the dominant allele frequency from 50% to 43%: A = 13 (43%) a = 17 (57%) AA Aa Aa aa aa AA Aa Aa aa aa AA Aa Aa Aa aa Killed in a cyclone Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 23 Genetic Drift Patterns Below are displayed the changes in allele frequencies in a computer simulation showing random genetic drift. Allele Frequency (%) The breeding populations vary from 2,000 (top) to 20 (bottom) and each simulation was run for 140 generations. 100 Large Gene Pool 80 Breeding Population = 60 2,000 Fluctuations are minimal because large numbers of individuals buffer the population against large changes in allele frequencies 40 20 0 0 20 40 60 80 100 120 140 Allele Frequency (%) Generations 100 Small Gene Pool 80 Breeding Population = 200 Fluctuations are more severe because random changes in a few alleles cause a greater percentage change in allele frequencies 60 40 20 0 0 20 40 60 80 100 120 140 Allele Frequency (%) Generations 100 Very Small Gene Pool 80 Breeding Population = 20 Fluctuations are so extreme that the allele may become fixed (100%) or lost altogether (0%) Allele lost from the gene pool 60 40 20 0 0 20 40 60 80 100 120 140 Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 24 Population Bottlenecks 1 Populations may sometimes be reduced to low numbers through periods of seasonal climatic change, heavy predation or disease, or through catastrophic events such as volcanic eruptions or other natural disasters. As a result, only a small number of individuals remain in the gene pool to contribute their genes to the next generation. The small sample that survives will often not be representative of the original, larger gene pool, and the resulting allele frequencies may be severely altered. In addition to this ‘bottleneck’ effect, the small surviving population is often affected by inbreeding and genetic drift. The original gene pool is made up of the offspring of many lineages (family groups and sub-populations) Lineage A TIME Extinction Lineage B Extinction Extinction Only 2 descendents of lineage B survive the extinction event Lineage C Extinction Genetic Bottleneck Extinction Extinction Extinction event such as a volcanic eruption All present day descendents of the original gene pool trace their ancestry back to lineage B and therefore retain only a small sample of genes present in the original gene pool Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 25 Large population with plenty of genetic diversity aa AA AA Aa Population crashes to a very low number and has lost most of its genetic diversity Aa AA aa AA AA Aa AA AA AA Aa Population grows to a large size again, but has lost much of its genetic diversity AA AA AA AA Aa AA AA AA Aa AA AA AA AA AA Aa Aa Aa AA OHT 26 Population Numbers Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Population Bottlenecks 2 AA Aa Population Bottleneck: the population nearly becomes extinct as numbers plummet Time Population Bottleneck in Cheetahs The world population of cheetahs has declined in recent years to fewer than 20,000. Recent genetic analysis has found that the total cheetah population has very little genetic diversity. Cheetahs appear to have narrowly escaped extinction at the end of the last ice age: 10 – 20,000 years ago. All modern cheetahs may have arisen from a single surviving litter – accounting for the lack of diversity. At this time, 75% of all large mammals perished (including mammoths, cave bears, and sabre-toothed tigers). The lack of genetic variation has led to: 1. Sperm abnormalities 2. Decreased fecundity 3. High cub mortality 4. Sensitivity to disease Since the genetic bottleneck, there has been insufficient time for random mutations to produce new genetic variation. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 27 The Founder Effect 1 Occasionally, a small number of individuals from a population may migrate away, or become isolated, from their original population. This colonising or ‘founder’ population will have a small and probably non-representative sample of alleles from the parent population’s gene pool. As a consequence of this founder effect, the colonising population may evolve in a different direction than the parent population. Such small founder populations are subject to random genetic drift. Aa Aa AA Aa AA Aa Aa Aa AA AA Aa Colonisation aa Aa aa Aa Aa AA aa Aa AA AA Aa aa Aa aa Aa AA Aa Aa Aa Aa Aa Mainland Population Aa aa Aa aa Aa AA Aa Aa Aa Aa AA AA AA AA Aa Aa AA Aa Aa AA Island Population The founder effect is typically seen in the populations of islands which are colonised by individuals from mainland populations - often these species have low mobility. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 28 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 29 Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 The Founder Effect 2 In this hypothetical population of beetles, a small randomly selected group is blown offshore to a neighbouring island where they establish a breeding population. Aa Aa AA Aa Aa Aa AA Some individuals from the mainland population are carried at random to the offshore island by natural forces such as strong winds AA Aa AA Aa aa Aa aa Aa Aa AA aa Aa AA aa Aa aa Aa AA Aa AA Aa Aa Aa Aa AA AA AA Aa Aa Aa Aa AA Aa Aa Aa AA Aa AA aa Aa aa This population may not have the same allele frequencies as the mainland population Aa Aa Aa AA Mainland Population Island Population Natural Selection Populations of sexually reproducing organisms consist of varied individuals, with some variants leaving more offspring than others. This differential success in reproduction is called natural selection. Natural selection acts on the phenotype of individuals in the following way: 1. It eliminates or reduces the reproductive success of individuals with poorly-suited phenotypes (their alleles become less common in the gene pool). 2. It enhances the survival and reproductive success of individuals with well-suited phenotypes (their alleles become more common in the gene pool). Natural selection therefore changes the composition of a gene pool and increases the probability that favourable alleles will come together in the same individual. AA aa aa Aa AA Aa Aa AA aa Aa aa Aa Aa Aa Aa Aa Aa AA Selection pressures may reduce certain allele frequencies AA aa Aa AA Aa Aa AA Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 30 Assortative Mating Random (non-assortative) mating allows all genotypes to have an equal chance of reproductive success. Individuals may deviate from this by: 1. Mating more often with close neighbours than with distant members of the population. 2. Choosing mates that are most like themselves. The most extreme case is self-fertilisation in some species of plant. Sometimes individuals may show random mating for some alleles but not others. EXAMPLE: Humans exhibit assortative mating for racial features, but mate randomly for blood types. While assortative mating does not change the frequency of alleles in the overall gene pool, it does cause the ratio of genotypes to depart from that of random mating. Aa AA aa aa AA aa aa Aa Aa AA Aa AA AA aa aa Aa aa AA AA Aa AA aa AA Random Mating AA aa aa Assortative Mating Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 31 Modes of Natural Selection Natural selection changes allele frequencies in populations, but it does not produce the “perfect organism”. Rather than developing new phenotypes, it reduces the frequency of phenotypes that are less suited to the prevailing conditions. Proportion of Population Traits (e.g. skin colour, height) that are under polygenic control show quantitative variation in the phenotype. Natural selection acts on this variation. Bell-shaped curve Variation in Phenotype Natural selection may produce phenotypic change over time. The direction of this change will depend on the nature of the selection pressure. Selection may be: ❑ Stabilising ❑ Directional ❑ Disruptive These can be depicted with graphs that show how the frequencies of different phenotypes change over time. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 32 Stabilising Selection 1 Probably the most common trend in natural populations. Stabilising selection favours the most common phenotype as the best adapted. Selection reduces variation by selecting against the extremes at each end of the range – the resulting bell shaped curve is narrower, about the same mean. EXAMPLE: Human birth weights are maintained in the 3-4 kg range by selection pressures at the extremes. Frequency Retained Eliminated Eliminated Variation in Phenotype Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 33 Stabilising Selection 2 Before selection (below) there is a broad range of variation in the population: Frequency Retained Eliminated Eliminated Frequency After selection (below) and some generations later there is a reduction in the amount of variation: Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 34 Selection in Human Birth Weights Stabilising selection against extremes in the birth weight range results in most births being between 3-4 kg. Percent of Births Sampled Modern medical intervention is reducing this selection. 40 80 35 70 30 60 25 50 20 40 15 30 10 20 5 10 0 0 0 1 2 3 4 5 6 Birth Weight (kg) Selection against low birth weight (small babies) with poor organ development Selection against high birth weight (large babies) due to childbirth complications Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 35 Directional Selection 1 Most common during periods of environmental change. Directional selection favours the phenotypes at one extreme of a phenotypic range. Selection reduces variation at one extreme of the range while favouring variants at the other end – the resulting bell shaped curve shifts in the direction of selection. EXAMPLE: Fossil evidence shows that the average size of black bears in Europe increased with each ice age, only to decrease again during the interglacials. Frequency Retained Eliminated Variation in Phenotype Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 36 Directional Selection 2 Before selection (below) there is a broad range of variation in the population: Frequency Retained Eliminated Frequency After selection (below) and some generations later there is a reduction in variation at one extreme of the range while favouring variants at the other end. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 37 Natural Selection in Peppered Moths 1 The peppered moth, Biston betularia, occurs in two forms (or morphs): The mottled grey form is well camouflaged against the lichen- covered bark of trees in unpolluted regions, making detection by predators more difficult. The dark melanic forms are disadvantaged in such environments as their body shape stands out against the background. Grey or mottled form of the peppered moth Biston betularia Melanic or carbonaria form of the peppered moth Biston betularia With the onset of the Industrial Revolution in England, the air quality declined, killing off lichen and resulting in a marked increase in the frequency of the dark moths. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 38 Peppered Moths 2 In the 1940s and 1950s, coal burning was still intense around the industrial centres of Manchester and Liverpool. During this time, melanic forms were still very dominant. In the rural areas further south and west of these industrial centres, the grey forms increased dramatically. Industrial areas Non-industrial areas Scale 60 km 60 miles Frequency of Peppered Moth forms in 1950 Glasgow Newcastle Belfast Middlesbrough Leeds Manchester Liverpool Hull Sheffield Nottingham Key to Frequency Graphs Birmingham Grey or speckled form Cardiff Melanic or carbonaria form Leicester Coventry London Bristol Portsmouth Plymouth Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 39 Peppered Moths 3 With the decline of coal burning factories and the Clean Air Acts in cities, the air quality improved between 1960 and 1980. Sulphur dioxide and smoke levels dropped to a fraction of their previous levels. This caused the relative numbers of melanic peppered moths to plummet. Frequency of Melanic Peppered Moth Related to Reduced Air Pollution 75 Melanic Biston betularia 150 80 50 Summer smoke 70 60 25 Winter sulphur dioxide 50 0 40 1960 1965 1970 1975 1980 Summer smoke (µg/m3) Frequency of melanic form of Biston betularia (%) 90 100 50 Winter sulphur dioxide (µg/m3) 100 0 1985 Year Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 40 Disruptive Selection 1 Occurs when environmental conditions are varied or when the environmental range of an organism is large. Disruptive selection favours phenotypes at both extremes of a phenotypic range over intermediate variants. The bell shaped curve acquires two peaks (i.e. becomes bimodal). This type of selection can lead to the formation of clines or ecotypes (organisms of the same species that are slightly different in appearance), and polymorphism. EXAMPLE: African swallow tail butterfly has developed three different populations that are Batesian mimics of other local distasteful butterfly species. Frequency Eliminated Retained Retained Variation in Phenotype Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 41 Disruptive Selection 2 Before selection (below) there is a broad range of variation in the population: Frequency Eliminated Retained Retained Frequency After selection (below) and some generations later individuals at both extremes of a phenotypic range are favoured over intermediate variants (2 peaks). Two peaks Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 42 Heterozygote Advantage Often individuals that are heterozygous for a particular gene (Aa) are more common in the population than would be predicted using Hardy-Weinberg laws. This is because the heterozygous condition can have a greater fitness than either homozygote (AA or aa). This is termed heterozygote advantage. Example: Sickle cell gene The mutant allele for sickle cell disease produces abnormal haemoglobin. This causes deformation of the red blood cells, so that they are destroyed. Heterozygotes (HbS,Hb) carry alleles for both sickle cell and normal haemoglobin. This results in greater malaria resistance but only mild anaemia. Homozygotes for normal haemoglobin (Hb,Hb) have greater susceptibility to malaria – in regions where malaria is prevalent, heterozygotes occur in greater numbers. Hb, Hb HbS, Hb HbS, HbS All red blood cells are normal Mixture of normal and sickle red blood cells All red blood cells are sickle shaped There is a good correlation between the incidence of malaria and regions where there is a high frequency of the sickle cell gene. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 43 Sickle Cell Disease and Malaria Areas affected by falciparum malaria Incidence of Falciparum Malaria 1% - 5% 5% - 10% 10% - 20% Frequency of Sickle Cell Gene (HbS) Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 44 Hybrid Vigour Individuals that are heterozygous for a number of different genes often demonstrate hybrid vigour. The hybrid offspring of two inbred organisms often show greater fitness (better growth and productivity for example) than either parent. The reasons for hybrid vigour are not always clear: Genes may affect more than one trait and heterozygotes may benefit from the effects of a number of different interactions expressed in the phenotype. EXAMPLE: Hybrid corn is valued for its high productivity. It is produced by crossing inbred parental strains with a high degree of homozygosity. Parental Strain A Homozygous for many genes Parental Strain B Homozygous for many genes X AAbbCCddEEff aaBBccDDeeFF AaBbCcDdEeFf Heterozygous for many genes Hybrid Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 45 Artificial Selection in Brassica Different parts of this plant have been developed by human selection to produce 6 separate vegetables with enormous visible differences. All these vegetables form a single species and will interbreed if allowed to flower (e.g. the new broccoflower). Cauliflower (Flower) Broccoli (Inflorescence) Cabbage (Terminal Buds) Brussels Sprout (Lateral Buds) Kale (Leaf) Kohlrabi (Stem) Wild Form Brassica oleracea Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 46 Artificial Selection in Dogs The dog was probably first domesticated at least 14,000 years ago from a grey wolf ancestor. Some 400 breeds have developed from this single wild species as a result of selective breeding by humans. Grey Wolf Sheepdog Greyhound Canis lupus pallipes Small wolf. Once common throughout Europe, Asia and, North America which displayed a wide variety of coat coloration. Canis familiaris metris optimae Originating in Europe, this breed has been used to guard flocks from predators for thousands of years. Canis familiaris leineri Drawings of this type on pottery dated 8,000 years ago in the Middle East, make this one of the oldest. Wolf-like Mastif-Type Pointer-Type Canis familiaris palustris Found in snow covered habitats in northern Europe, Asia (Siberia) and North America (Alaska). Canis familiaris inostranzevi Originally from Tibet, the first records of this breed of dog go back to Neolithic times. Canis familiaris intermedius Probably derived from the greyhound breed for the purpose of hunting small game. Set 6: Population Genetics Produced by: BIOZONE INTERNATIONAL © 2001 Printing onto Paper Prohibited T h e s e m a s t e r s m ay o n l y b e u s e d t o g e n e r a t e O ve r h e a d Tr a n s p a r e n c i e s ( O H T s ) . OHT 47