Office for Research and Programs MBL 7 MBL Street Woods Hole, MA 02543 USA p: 508-289-7270 f: 508.289-7934 jgitlin@ MBL.edu WHITMAN CENTER DIRECTORY 2014 Founded in 1888 as the Marine Biological Laboratory LastName Alford Armstrong Augustine Baker Balmer Bennett Berger Bezanilla Bloom Bodznick Bohorquez Brady Brangwynne Burgess Chang Chen Cohen Colin Colon-Ramos Costello Dzakpasu Echeverry Field Fritzenwanker Furlow Gadsby Garcia-Arraras Gatlin Gillis Gladfelter Goldman Gonczy Goshima Grant Gray Green Groh Gross Hammarlund Hershko Huh Jonas Jorgensen Kaczmarek Karlstrom Kaupp Kittelberger Kovar Lee Llinas Llobet FirstName Simon Peter George Robert Tim Michael Christopher Magdalena Ona David Diego Scott Clifford David Fred Christopher Lawrence Sean Daniel John Rhonda Fabio Christine Jens John David Jose Jesse James Amy Robert Pierre Gohta Philip Jessica William Alexander Jeffrey Marc Avram Yeowool Elizabeth Erik Leonard Rolf U. Benjamin Matthew David Wei-Lih Rodolfo Artur StartDate 05/15/2014 06/01/2014 06/01/2014 06/01/2014 05/26/2014 07/01/2014 06/28/2014 06/23/2014 07/01/2014 05/01/2014 05/26/2014 07/01/2014 06/13/2014 06/02/2014 06/30/2014 05/26/2014 05/20/2014 06/01/2014 06/01/2014 06/15/2014 06/15/2014 05/25/2014 06/24/2014 05/01/2014 07/01/2014 05/01/2014 05/15/2014 06/14/2014 05/26/2014 06/14/2014 06/02/2014 06/16/2014 07/14/2014 06/30/2014 05/01/2014 06/22/2014 05/26/2014 06/01/2014 06/29/2014 07/07/2014 05/26/2014 06/15/2014 06/27/2014 06/18/2014 07/07/2014 07/01/2014 05/23/2014 07/13/2014 06/23/2014 05/01/2014 06/16/2014 EndDate Room Assignment 08/15/2014 R-407 09/30/2014 L-118 08/31/2014 R-221 10/01/2014 R-220 08/30/2014 R-201,223 09/15/2014 R-213 08/16/2014 L-341 08/22/2014 L-104,105 08/25/2014 R-406 09/01/2014 R-211 08/30/2014 R-201,223 08/31/2014 R-108,109 08/03/2014 R-319,320, 321 08/30/2014 R-308 08/10/2014 R-308 08/30/2014 R-201,223 09/05/2014 R-210 08/28/2014 R-301 08/15/2014 R-219 09/01/2014 R-301 08/02/2014 R-322 08/30/2014 R-201,223 09/04/2014 R-205/215 05/19/2014 R-108 09/30/2014 Lb NXR G12 09/21/2014 L-121 08/15/2014 L-341 08/17/2014 R-206 08/08/2014 Lb-257A 08/17/2014 R-319,320, 321 08/29/2014 R-305/307 07/28/2014 L-118 08/24/2014 L-104,105 09/06/2014 R-326 05/30/2014 R-108 08/09/2014 R-322 08/30/2014 R-201,223 09/15/2014 R-211 08/30/2014 L-341 08/28/2014 R-311 08/30/2014 R-201,223 09/15/2014 R-213 07/27/2014 R-310 09/15/2014 R-213 08/23/2014 R-421 08/30/2014 R-312 08/30/2014 R-201,223 08/02/2014 L-104,105 08/15/2014 L-104,105 10/31/2014 R-207,208,209 08/04/2014 Lb NXR G12 Page 1 1 2 2 3 3 4 4 5 5 6 6 7 7 8 8 9 9 10 10 11 11 12 12 13 13 14 14 15 15 16 16 17 17 18 18 19 19 20 20 21 21 22 22 23 23 24 24 25 25 26 Lowe Maienschein Malchow Martinez-De Luna Mease Mensinger Miller Mitchison Morfini Nakamura Oakey Pant Parker Pereda Rome Rosa-Molinar Rose Rosen Rosenthal Rost Selvin Sloboda Sluder Song Springer Tamm Terasaki Treistman Vale Watanabe Waterman Wilhelm Wu Younger Zimmerberg Zottoli Christopher Jane Robert Reyna Rebecca Allen Andrew Timothy Gerardo Tetsuya John Harish C Roy Alberto Lawrence Eduardo Robert Michael Joshua Benjamin Paul Roger Greenfield Yuyu Timothy Sidney Mark Steven Ron Shigeki Clare Jim Hao Meg Joshua Steven 09/01/2014 05/17/2014 06/17/2014 05/26/2014 05/26/2014 06/15/2014 06/01/2014 06/22/2014 07/01/2014 06/20/2014 06/15/2014 06/15/2014 06/16/2014 05/23/2014 06/01/2014 06/28/2014 06/18/2014 06/16/2014 06/20/2014 05/23/2014 06/15/2014 06/20/2014 05/01/2014 05/26/2014 05/30/2014 06/15/2014 05/15/2014 06/01/2014 06/15/2014 05/26/2014 06/10/2014 06/14/2014 06/16/2014 05/26/2014 06/15/2014 05/01/2014 09/30/2014 09/16/2014 08/23/2014 08/30/2014 08/30/2014 08/25/2014 09/30/2014 08/31/2014 09/01/2014 08/31/2014 08/15/2014 09/03/2014 08/01/2014 09/01/2014 08/31/2014 08/03/2014 07/31/2014 06/28/2014 08/10/2014 08/30/2014 07/25/2014 08/30/2014 10/01/2014 08/30/2014 09/07/2014 10/15/2014 10/31/2014 09/30/2014 08/31/2014 08/20/2014 08/05/2014 08/16/2014 08/01/2014 08/30/2014 09/07/2014 08/31/2014 Library, L-228 MRC-306 R-201,223 R-201,223 MRC-306 R-220 R-205,215 R-108,109 MRC-306 R-206 R-326 R-319,320,321 R-201,223 R-313 L-208 R-401,423 R-319,320,322 R-219 R-201,223 R-322 L-121 R-308 R-201,223 R-305 R-113 R-113 R-219 R-319,320,321 R-201,223 R-305, 307 R-319,320,322 R-319, 320, 321 R-201,223 R-309 R-213 26 27 27 28 28 29 29 30 31 31 32 32 33 33 34 34 35 35 36 36 37 37 38 38 39 39 40 40 41 41 42 42 43 43 44 44 Simon Alford MBL Association: PI-MBL Research Awardee Institution Contact Information: University of Illinois at Chicago Biological Sciences 840 W Taylor St Chicago IL 60607 Email: sta@uic.edu Dates at MBL: 5/15/2014 - 8/15/2014 Research Title: Research Description: Temporo-spatial analysis of the synaptic vesicle pool Room Assignment: R-407 Neurons interconnect at synapses, which function by releasing packets of neurotransmitter from vesicles located adjacent to fusion sites in pools defined physiologically by their probability of fusion: the readily-releasable, recycling, and reserve pools. After fusion, vesicle membrane is retrieved and proteins are sorted back into appropriate vesicle pools. This process of endocytosis follows one of at least two possible fusion modes after low to medium frequency activation: full vesicle fusion, where the vesicle fully collapses into the presynaptic membrane, or kiss-and-run, where it transiently fuses and the fusion pore reseals. These two modes may lead to very different endocytic pathways, while a third mechanism – bulk endocytosis – may follow high frequency activity. Though endocytosis is required for neural function, little is known of the processes that lead to different endocytic modes, which protein partners are utilized in different modes, and which of the physiologically defined pools of synaptic vesicles the endocytosed vesicle reenters. To address these questions, we will use the unique accessibility of the lamprey reticulospinal (RS) synapse, which enables molecular perturbations and a variety of imaging modalities to be applied. Peter Armstrong MBL Association: Principal Investigator Institution Contact Information: University of California Molecular and Cellular Biology One Shields Ave Davis CA 95616 Email: pbarmstrong@ucdavis.edu Dates at MBL: 6/1/2014 - 9/30/2014 Research Title: Research Description: Innate immunity in long-lived animals Room Assignment: L-118 I will investigate the processes by which the important microbial toxin lipopolysaccharide (LPS, endotoxin) is processed by longlived animals. 1 George Augustine MBL Association: Principal Investigator & Grass Imaging Awards Director Institution Contact Information: Duke University Medical Center Neurobiology 359 Bryan Research Building Research Dr. Durham NC 27710 Email: georgea@neuro.duke.edu Dates at MBL: 6/1/2014 - 8/31/2014 Research Title: Research Description: Molecular mechanisms of neurotransmitter release Room Assignment: R-221 Our lab uses the squid giant synapse as a model system to understand the mechanisms involved in communication between brain cells. Robert Baker MBL Association: Principal Investigator Institution Contact Information: New York University Langone Medical Center Physiology and Neuroscience 550 First Ave New York, NY NY 10016 Email: robert.baker@nyumc.org Dates at MBL: 6/1/2014 - 10/1/2014 Research Title: Research Description: Analysis of hindbrain and cerebellar development in zebrafsih Room Assignment: R-220 We plan to study the development of vestibular afferent and efferent neurons in zebrafish that are hypothesized to produce eye movement following visual and vestibular stimulation. These neurons will be identified by stable transgenic markers and studied between 3-5 days post fertilization. This work is is designed to provide a basic description of the structure and function of vestibular neural circuits essential for zebrafish swimming, predation and in fact survival. 2 Tim Balmer MBL Association: PI-Grass Fellow Institution Contact Information: Georgia State University Neuroscience Institute PO Box 5030 Atlanta GA 30302 Email: tbalmer2@student.gsu.edu Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: The contribution of perineuronal nets to regulation of neuronal activity Room Assignment: R-201,223 Perineuronal nets (PNNs) are specialized condensations of extracellular matrix that surround the somata of neurons throughout the brain. Because PNNs surround fast-spiking neurons and are highly negatively charged, it has been proposed that they act as a buffering system for cations, supporting fast and precise action potential generation. Electrophysiological recordings paired with enzymatic digestion of PNNs will allow me to test the role of PNNs in supporting fast-spiking and timing accuracy, and buffering potassium ions that contribute to fast repolarization of action potentials. These experiments will identify how PNNs contribute to neuronal function and how PNNs could contribute to pathologies of neuronal activity such as epilepsy. Michael Bennett MBL Association: Principal Investigator Institution Contact Information: Albert Einstein College of Medicine Neuroscience 1300 Morris Park Ave Bronx NY 10461 Email: mbennett@aecom.yu.edu Dates at MBL: 7/1/2014 - 9/15/2014 Research Title: Research Description: Evolution of electrical coupling Room Assignment: R-213 Electrical coupling by way of gap junctions has evolved at least twice. In vertebrates, gap junctions are formed by connexins, a gene family of 21 members in humans. Connexins first appear in ascidians and are not found in less derived deuterostomes including branchiostomes or in protostomes. In protostomes gap junctions are formed by pannexins/innexins, a gene family expressed in Coelenterates, Cniderians, Platyhelminthes, Nematodes, Molluscs, and Arthropods. Pannexins are also expressed in Branchiostomes, ascidians, and vertebrates. In vertebrates, pannexins are not known to form gap junctions and electrically couple cells expressing them endogenously. In mammals pannexins are thought to form “hemichannels” that directly connect cell cytoplasm and external milieu. Neither connexins or pannexins are expressed in echinoderms or in a primitive eukaryote, Tricoplax. We hope to find a collaborator to examine coupling in Arbacia, Brachiostoma, Saccoglossus, and Tricoplax. 3 Christopher Berger MBL Association: PI-MBL Research Awardee Institution Contact Information: University of Vermont Molecular Physiology & Biophysics 149 Beaumont Ave. E217 Given, Collegeof Medicine Burlington VT 05405 Email: cberger@uvm.edu Dates at MBL: 6/28/2014 - 8/16/2014 Research Title: Research Description: Single Molecule Imaging of Tau Dynamics in Isolated Squid Axoplasm Room Assignment: L-341 Axonal transport is a critical process in nerve cells in which biomolecules and cellular organelles manufactured in the cell body are moved along microtubule tracks by motor proteins (e.g., kinesin) to the distal regions of the axon, a long cellular extension that interacts with other neurons and effector cells such as muscle. Defects in any one of the protein components in the axonal transport machinery result in serious and often lethal neurodegenerative diseases, including Alzheimer’s, Huntington’s, and ALS. These neurodegenerative disorders affect millions of Americans with a staggering economic toll on health care costs, but we unfortunately still do not fully understand the biological mechanisms that lead to these pathological states. Tau is a neuronalspecific microtubule associated protein implicated in a number of these neurodegenerative diseases. It is a diverse molecule known to be conformationally dynamic, adopting multiple structural states that define a variety of different functions within the neuron, including stabilization of microtubules and modulating the axonal transport process. However, despite the importance of tau’s structural dynamics to its function, the structure/function relationships within this molecule remain poorly defined. Previous in vitro work in our lab has shown that tau exists in a dynamic equilibrium on the microtubule surface between static and mobile (diffusive) states, where the static state can disrupt axonal transport. At the MBL we will extend our cutting-edge quantitative single molecule fluorescence imaging techniques to study the dynamics of tau and their effects on axonal transport in the classic isolated squid axoplasm system, recapitulating the intracellular environment within the neuron. Magdalena Bezanilla MBL Association: PI-MBL Research Awardee Institution Contact Information: University of Massachusetts Amherst Biology 221 Morrill South 611 N. Pleasant Street Amherst MA 01003 Email: bezanilla@bio.umass.edu Dates at MBL: 6/23/2014 - 8/22/2014 Research Title: An unconventional myosin mediates cross talk between the actin and microtubule cytoskeletons _ _____________________________________________________________________ In many cells, placement of the cell division plane often affects cell fate specification. In plants this is particularly relevant. Plants Research Description: Room Assignment: L-104,105 are surrounded by a rigid cell wall; thus, patterns of cell division and expansion ultimately dictate cell shape. My lab has discovered a link between microtubules in the phragmoplast, the structure responsible for cell plate formation, and cell plate deposition during cytokinesis. We propose that peripheral phragmoplast microtubules loaded with myosin VIII on their plus ends use actin filaments between the phragmoplast edge and the cell cortex to guide proper phragmoplast expansion. This summer we aim to validate the model and gain a molecular understanding for myosin VIII localization throughout mitosis and cytokinesis. 4 Ona Bloom MBL Association: PI-MBL Research Awardee Institution Contact Information: Feinstein Institute for Medical Research; Hofstra North Shor Autoimmune/Physical Med & Rehab 350 Community Drive 1FR Manhasset NY 11030 Email: obloom@nshs.edu Dates at MBL: 7/1/2014 - 8/25/2014 Research Title: Research Description: Defining the conserved molecular pathways underlying successful regeneration after SCI Room Assignment: R-406 The ability to promote successful recovery after spinal cord injury (SCI) will likely derive from identification of biological processes that accompany both success and failure to regenerate central nervous system (CNS) tissue in species where regenerative capacity ranges from limited to robust. In contrast to mammals, other vertebrates, such as jawless (lamprey) and jawed vertebrates (salamander), achieve significant spontaneous anatomical and functional recovery after SCI. The mechanisms that support regeneration in these animals are largely unknown, limiting our ability to promote regeneration in mammals. Here, our goal is to bridge that gap using a comparative genomics approach to identify conserved molecular responses underlying successful regeneration after SCI using parallel injury models, data collection and analysis methods, and common molecular manipulations in salamander and lamprey. David Bodznick MBL Association: Principal Investigator Institution Contact Information: Wesleyan University Biology 45 Wyllys Ave Middletown CT 06459 Email: dbodznick@wesleyan.edu Dates at MBL: 5/1/2014 - 9/1/2014 Research Title: Research Description: Did the cerebellum evolve from a cerebellum like sensory structure? Room Assignment: R-211 To develop a novel motor learning paradigm in fish that demonstrates continuity in functional algorithm between cerebellum and cerebellum-like structures. In particular, a negative motor image analogous to the negative sensory image that is diagnostic of the sensory adaptive filter mechanism we have studied in the cerebellum-like sensory nuclei in sharks, skates and other fishes. Much of this work has been the result of a long-term collaboration between Professors Bodznick and Montgomery. 5 Diego Bohorquez MBL Association: PI-Grass Fellow Institution Contact Information: Duke University Medical Center Medicine 300 Research Dr. Sands Building 334 Durham NC 27710 Email: diego.bohorquez@duke.edu Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: Function of a gut-brain neural circuit modulating satiety Room Assignment: R-201,223 Our gut is thought to transmit sensory information to the brain through the paracrine action of hormones. This is because enteroendocrine cells, the epithelial sensors of the intestine, are thought to lack synaptic connections with nerves. However, I recently discovered a physical connection between enteroendocrine cells and underlying sensory neurons. This neuro-epithelial junction may constitute the first point of integration between food sensed in the gut and satiety perceived in the brain. Hence, my objective for the Grass Fellowship would be to study the function of this enteroendocrine cell-neuron circuit by documenting its ultrastructure and electrical properties. Scott Brady MBL Association: Principal Investigator Institution Contact Information: University of Illinois at Chicago Anatomy and Cell Biology 808 S Wood St Rm 578 MC 512 Chicago IL Email: stbrady@uic.edu Dates at MBL: 7/1/2014 - 8/31/2014 Research Title: Research Description: Molecular mechanisms of fast axonal transport Room Assignment: R-108,109 Neuronal growth, maintenance and regeneration are critically dependent on delivery of materials from cell body to the nerve fiber and terminal. Motor proteins that were first described at the MBL using the squid as a model organism mediate this process, known as fast axonal transport. We use the giant axon of the squid and digital video microscopy to study how these motor proteins work and how they are regulated in neurons. These studies are important for understanding the basic biology of the neuron and have provided important insights into molecular mechanisms underlying neurodegenerative diseases like ALS as well as Huntington's, Alzheimer's and Parkinson's disease. 6 Clifford Brangwynne MBL Association: Principal Investigator Institution Contact Information: Princeton University Chemical and Biological Engineering 301 Hoyt Laboratory William Street Princeton NJ 08544 Email: cbrangwy@princeton.edu Dates at MBL: 6/13/2014 - 8/3/2014 Room Assignment: R-319,320, 321 Research Title: Research Description: David Burgess MBL Association: Principal Investigator Institution Contact Information: Boston College Biology Higgins Hall 140 Commonwealth Ave Chestnut Hill MA 02467 Email: david.burgess@bc.edu Dates at MBL: 6/2/2014 - 8/30/2014 Research Title: Research Description: Control of spindle and division plane positioning Room Assignment: R-308 Four summers ago, Fred Chang and I shared a lab at the MBL and began a very fruitful collaboration. With his postdoc Nico Minc, an engineer learning biology, we devised microfabricated chambers used to change the shape of cells in a predictable fashion. Our goal was to design shapes that would comment on the rules that position the cleavage furrow in sea urchin eggs, a system my lab had been studying for over 30 years. By emulating Rappaport's famous single cell shape change experiments using the power of scale, we thought we could further comment on the regulation of cytokinesis. What ensued was a study on the control of nuclear centering and spindle positioning published in Cell. We propose to continue this work by performing live cell imaging of the location and dynamics of microtubules and actin filaments in shaped cells and cell extracts. 7 Fred Chang MBL Association: Principal Investigator Institution Contact Information: Columbia University Microbiology 701 168th St. New York NY 10032 Email: fc99@columbia.edu Dates at MBL: 6/30/2014 - 8/10/2014 Research Title: Research Description: Positioning of the cell division plane Room Assignment: R-308 Cytokinesis is the process in which a cell is divided into two. One of the key questions in cytokinesis is how the cell decides where to divide. The proper selection of the division plane is critical for the embryonic development and organization of cells in the body. The mitotic spindle is thought to control where the cell divides. Models have been proposed in which the spindle microtubules transport signals; to the right location on the cell surface. The molecular details of this process and even the precise role of microtubules in this process are not well understood. The shape of the cell may guide division patterns during development. We have recently found a way of altering cell shape by introducing cells into tiny wells of different shapes, forming cells for instance the shape of squares, triangles and even stars. By combining these experiments in sea urchin cells with computer modeling, we hope to test models of cell division. Christopher Chen MBL Association: PI-Grass Fellow Institution Contact Information: Albert Einstein College of Medicine Neuroscience 1410 Pelham Pkwy South, Albert Kennedy Center Room 506 Bronx NY 10461 Email: Dates at MBL: 5/26/2014 - 8/30/2014 Room Assignment: R-201,223 Research Title: Research Description: Corticothalamic modulation of cerebellar gain It is well known that attention sharpens and increases sensory perception. Similarly, attention is critical for the completion of complex motor tasks, but the neural mechanisms of this are unknown. In sensory systems, corticothalamic modulation of thalamic activity is a significant substrate for these increases in perception. Comparable circuits also exist in the motor system, suggesting that corticothalamic inputs at the thalamus can increase the gain of motor systems. Moreover, there are significant inputs from the frontal cortex to the origins of these corticothalamic axons, suggesting that executive control areas may exert control over cerebellar outputs at the thalamus. Successful completion of this project will extend attentional mechanisms to the motor system and advance our understanding of corticothalamic modulation of subcortical computations. 8 Lawrence Cohen MBL Association: Principal Investigator Institution Contact Information: Korea Institute of Science and Technology/ Yale Center for Functional Connectomics/Physiology Hwarangno 14-gil 5 Seongbuk-gu Seoul Seoul 136-791 Email: lawrence.cohen@yale.edu Dates at MBL: 5/20/2014 - 9/5/2014 Research Title: Research Description: Optical studies of neuron activity and organization Room Assignment: R-210 The proposed experiments are directed toward understanding how the brain accomplishes odor recognition. The experiments involve 2-photon microscopic measurements of calcium changes in neurons from in vivo mouse preparations. With this technique we can follow the activity of hundreds of neurons simultaneously. We hope that this capability will increase our understanding of these brain functions. Sean Colin MBL Association: Principal Investigator Institution Contact Information: Roger Williams University Environmental Science One Old Ferry Road Bristol RI 02809 Email: scolin@rwu.edu Dates at MBL: 6/1/2014 - 8/28/2014 Research Title: Research Description: Effects of turbulence on the feeding ecology of the lobate ctenophore Mnemiopsis leidyi Room Assignment: R-301 The lobate ctenophore Mnemiopsis leidyi is a voracious planktonic predator whose global distribution is expanding. In order to understand the types of environmental conditions in which M. leidyi is capable of thriving we will investigate the effects of different turbulence environments on M. leidyi. We will use a combination of laboratory experimentation and field sampling to quantify how different levels of turbulent mixing affect the feeding behavior and predatory impact of M. leidyi. 9 Daniel Colon-Ramos MBL Association: PI-MBL Research Awardee Institution Contact Information: Yale University Cell Biology 295 Congress Avenue BCMM 436B CT 06510 Email: daniel.colon-ramos@yale.edu Dates at MBL: 6/1/2014 - 8/15/2014 Research Title: Research Description: An integrated system to monitor complex tissues at single-cell resolution Room Assignment: R-219 We have recently developed a prototype system for fast, long-term imaging and analysis of single-cell behaviors in complex tissues and whole embryos. We aim to bring this innovative and unique system to maturity and to the hands of the research community as a powerful and versatile tool for single-cell studies in complex, differentiating populations. During our summer tenure at Woods Hole we will seek to achieve two complimentary goals: 1) Establish collaborations with resident and visiting scientists to apply the versatility of this new instrumentation to different biological questions of interest. In particular, we have established a formal collaboration with visiting scientist Steve Treistman, and the University of Puerto Rico lab at Woods Hole. Woods Hole is an ideal setting to get this innovative system to the hands of the research community, and that is one of the primary goals of our visit. 2) The four investigators listed in this proposal will collaborate during the summer months to bring their neurobiology and cell biology expertise (Daniel Colón-Ramos), imaging expertise (Hari Shroff) and single cell tracking expertise (Zhirong Bao) and developmental biology expertise (William Mohler) to bear in improving the current system. John Costello MBL Association: Principal Investigator Institution Contact Information: Providence College Biology River Ave. Providence RI 02918 Email: costello@providence.edu Dates at MBL: 6/15/2014 - 9/1/2014 Research Title: Quatitatively evaluating the role of in situ turbulence on predation by the lobate ctenophore Mnemiopsis leidyi Research Description: The ctenophore Mnemiopsis leidyi is an important planktonic predator whose predatory impacts have been associated with profound alterations in planktonic community structure both in its endemic and invaded ranges. Our ability to predict its impact within planktonic communities depends upon the depth of our understanding of its predatory mechanisms. Laboratory studies have provided us with an understanding of the mechanisms by which Mnemiopsis encounters different types of prey and the efficiency with which it captures them. Yet, despite advances in the descriptions of ctenophore predation mechanisms, the unpredictability of field diet selection patterns demonstrates that our current understanding is incomplete. Room Assignment: R-301 We propose a synthetic approach to resolve these shortcomings that utilizes the complimentary strengths of both laboratory and field methods. 10 Rhonda Dzakpasu MBL Association: PI-MBL Research Awardee Institution Contact Information: Georgetown University Physics 506 Reiss 37th and O St. NW Washington DC 20057 Email: dzakpasu@physics.georgetown.edu Dates at MBL: 6/15/2014 - 8/2/2014 Research Title: How Aβ pathology modulates network activity within the entorhinal cortex-hippocampus microcircuit in an Alzheimer’s mouse model Research Description: Alzheimer’s disease (AD) is a progressive, age-related neurodegenerative disorder characterized by significant impairment in declarative memory. AD accounts for 60-80% of dementia cases in the United States and is the 6th leading cause of death in the country. The largest overall risk factor for AD is aging. Mounting evidence indicates that AD pathology develops in a stereotypical form with the accumulation of extracellular amyloid (Aβ) plaques and intraneuronal neurofibrillary tangles (NFTs), as well as Room Assignment: R-322 neuronal loss that initially occurs in layer II of entorhinal cortex. However, mechanisms that underlie the network effects and propagation of pathology from the primary site of pathological origin remain to be elucidated. We will study deficits in network activity from specific neural populations within an in vitro slice mouse model of AD via the following two aims. Aim 1: To investigate how A modulates network temporal dynamics within the entorhinal-hippocampus circuit using an amyloidogenic mouse model. Aim 2: Investigate the impact of Aon synaptic plasticity within a network of cultured hippocampal neurons. Fabio Echeverry MBL Association: PI-Grass Fellow Institution Contact Information: Center of Advanced European Studies and Research (caesar) Molecular Sensory Systems Ludwig-Erhard-Allee 2 Bonn NRW 53175 Email: fabio.echeverry-bautista@caesar.de Dates at MBL: 5/25/2014 - 8/30/2014 Research Title: Research Description: Physiological Role of cNMP-modulated Channels on Scallop Ciliary Photoreceptors Room Assignment: R-201,223 Ciliary photoreceptors of the scallop (Pecten irradians) respond to light with a hyperpolarization. Patch-clamp studies have shown that intracellular dialysis of cGMP opens light-activated K+ channels. In order to identify the light-activated channel, I have molecularly identified different ion channels that harbor a cyclic-nucleotide binding domain (HCN, CNG and ERG channels), expressing in the ciliary photoreceptors of Pecten. I aim to study the physiological role played by these ion channels in native ciliary photoreceptors of the scallop by using the patch-clamp technique. This approach will help to deeper understand the different photo-transduction pathways present through the ciliary photoreceptor lineage. 11 Christine Field MBL Association: PI-MBL Research Awardee Institution Contact Information: Harvard Medical School Systems Biology WA 536 200 Longwood Av Boston MA 02115 Email: christine_field@hms.harvard.edu Dates at MBL: 6/24/2014 - 9/4/2014 Research Title: Research Description: Cytokinesis signaling in a cell free system Room Assignment: R-205/215 We have developed methods for reconstituting cytokinesis signaling in a cell free system derived from Xenopus eggs. Overlap zones between microtubule asters recruited various signaling complexes, including the Aurora B complex/CPC, to form midzonelike assemblies. On a supported lipid bilayer underlying these midzones, several cleavage furrow markers, including F-actin, RhoA and Anillin were selectively recruited. Aurora B activity was required for midzone formation and for recruitment of furrow components to the lipid bilayer. In 2104 we will start to probe mechanisms involved in these assembly and signaling processes. We will test role of the kinesin, Kif20A in transporting Aurora B complex/CPC to the center of midzones. We will develop systems for artificially localizing Aurora B complex/CPC on supported lipid bilayers, and ask if downstream cleavage components become localized to lipid bilayers in response. Jens Fritzenwanker MBL Association: Principal Investigator Institution Contact Information: Hopkins Marine Station of Stanford University Hopkins Marine Station 120 Oceanview Blvd Pacific Grove CA 93950 Email: jens.fritzenwanker@web.de Dates at MBL: 5/1/2014 - 5/19/2014 Research Title: Research Description: Bilaterian body plan evolution Room Assignment: R-108 My research focuses on general bilaterian body plan evolution with focus on early evolution of deuterostomes. I am especially interested in the evolution of the bilaterian trunk and the evolutionary plasticity of nervous systems. I am addressing my research questions by analyzing and comparing gene regulatory networks." 12 John Furlow MBL Association: PI-MBL Research Awardee Institution Contact Information: University of California, Davis Neurobiology, Physiology and Behavior One Shields Avenue Davis CA 95616 Email: jdfurlow@ucdavis.edu Dates at MBL: 7/1/2014 - 9/30/2014 Research Title: In vivo analysis of thyroid hormone receptor signaling during development using emerging genetic technologies in Xenopus laevis and Xenopus tropicalis Research Description: We are applying emerging powerful genetic approaches in Xenopus laevis and Xenopus tropicalis available at the Xenopus National Resource at the MBL to reduce the expression of thyroid hormone receptor subtypes, and test their roles during early development and thyroid hormone dependent metamorphosis. These studies will contribute to our understanding of tissue specific actions of hormones in a developmental context, using this highly evolutionarily conserved endocrine signaling system. Another important aspect of our work is determining the effect of environmental chemicals on proper thyroid hormone signaling in vertebrate development. We are further applying the available genetic technologies now available in the organism to produce tadpoles that express easily measurable, hormone responsive reporter genes. This will allow us to detect proper temporal and spatial thyroid hormone action in vivo, in response to both endogenous hormones and potential environmental contaminants. Room Assignment: Lb NXR G12 David Gadsby MBL Association: Principal Investigator Institution Contact Information: Rockefeller University Lab Cardiac/Membrane Physiology 1230 York Ave New York NY 10065 Email: gadsby@rockefeller.edu Dates at MBL: 5/1/2014 - 9/21/2014 Research Title: Research Description: Mechanisms of function and dysfunction of the Na, K-ATPase pump Room Assignment: L-121 We study how sodium and potassium ions, and recently also protons, move through the Na/K-ATPase pump. The Na/K pump opens and closes gates to allow access to its ion-binding sites alternately from only the cytoplasmic or the extracellular side of the membrane. We use electrical recordings to investigate the conformational changes of the Na/K pump that control this orchestrated series of steps that effects ATP-driven active transport of sodium and potassium ions across the surface membranes of all animal cells. This transport generates the transmembrane gradients of sodium and potassium concentration on which cell life depends. We recently found that protons hijack a subset of Na/K pump conformations during normal sodium and potassium transport and hop between a pair of protonatable residues to cause an inward current of protons. The physiological and/or pathological consequences of this Na/K pump-mediated cellular proton influx remain to be determined. 13 Jose Garcia-Arraras MBL Association: PI-MBL Research Awardee Institution Contact Information: University of Puerto Rico Biology Box 23360 UPR Station San Juan PR 00931-3360 Email: jegarcia@hpcf.upr.edu Dates at MBL: 5/15/2014 - 8/15/2014 Research Title: Research Description: Regeneration of the nerve ring in holothurans: cellular and molecular studies Room Assignment: L-341 The long-term goal of our project is to determine the cellular and molecular bases of echinoderm regenerative capacities. During the summer period we will focus on studying regeneration in the holothurian species, Sclerodactyla briareus. Our project will accomplish two different but related goals. First, it will serve to determine the cellular and molecular events associated with the regeneration of the nerve ring, the structure that is the major component of the central nervous system of echinoderms. Second, it will serve to establish new tools to study a species that is commercially available and thus can be easily obtained by national and international researchers. Specifically we plan to develop an RNAi methodology for gene knockdown in regenerating holothurians. Jesse Gatlin MBL Association: PI-MBL Research Awardee Institution Contact Information: University of Wyoming Molecular Biology (#3944) 1000 E. University Ave Laramie Wyoming 82071 Email: jgatlin@uwyo.edu Dates at MBL: 6/14/2014 - 8/17/2014 Research Title: Research Description: Room Assignment: R-206 Spindle assembly and positioning in limiting cytoplasmic volumes In order to accurately segregate its copied chromosomes, a dividing cell must first assemble a mitotic spindle, a microtubulebased structure that attaches to and physically pulls apart sister chromosomes. This structure is often assembled at or moved close to the cell center prior to anaphase onset, ensuring proper positioning of the division plane. Many of the molecular players involved in spindle assembly have now been identified, but it remains unclear how they self-assemble to form a steady-state structure with a constant length and characteristic shape. Even less is known about how spindles find the center of cells, particularly large ones. The objective of our MBL research is to characterize the effects of limiting cytoplasmic volumes on both spindle assembly and spindle positioning. We have recently developed an experimental platform that combines microfluidics and cell-free extracts to investigate spindle size regulation during early development. For our summer research, we plan to build upon this platform to determine how limiting cytoplasmic volumes might affect spindle shape and to examine the biomechanics involved in spindle positioning. 14 James Gillis MBL Association: PI-MBL Research Awardee Institution Contact Information: Dalhousie University Biology Life Science Centre 1355 Oxford Street Halifax Nova Scotia B3H 4R2 Email: andrew.gillis@dal.ca Dates at MBL: 5/26/2014 - 8/8/2014 Research Title: Experimental investigations of craniofacial development and cartilage repair in the little skate, Leucoraja erinacea Research Description: My research program uses cartilaginous fishes (sharks, skates, rays and holocephalans) as models for the development of the skeleton and sensory nervous system of jawed vertebrates. Cartilaginous fishes have retained a number of primitive anatomical conditions, and, as the sister group the bony fishes (including model systems like mouse and zebrafish), occupy a critical phylogenetic position for studies aiming to understand the nature of the last common ancestor of jawed vertebrates. My 2014 summer research will use embryos of the little skate, Leucoraja erinacea, to address the following questions: 1) What is the molecular basis of gill arch appendage patterning in cartilaginous fishes, and were gill arch appendages evolutionary antecedents to fins/limbs; and 2) What are the embryonic origins of the spiracular sense organ of cartilaginous fishes, and is this organ homologous with the paratympanic organ of birds and other tetrapods? This research will shed light on the evolutionary origin of the jawed vertebrate body plan, and will yield new data on fundamental processes in developmental biology (e.g. axial patterning, appendage development and sensory receptor cell differentiation). Room Assignment: Lb-257A Amy Gladfelter MBL Association: Principal Investigator Institution Contact Information: Dartmouth College Biological Sciences 78 Life Sciences Center Hanover NH 03755 Email: amy.gladfelter@dartmouth.edu Dates at MBL: 6/14/2014 - 8/17/2014 Research Title: Research Description: Room Assignment: R-319,320, 321 Local control of cytokinesis analyzed in a cell-free system We use Xenopus egg extracts and supported synthetic lipid bilayers to monitor the recruitment of proteins involved in cleavage furrow formation (RhoA, anillin and septins) in response to signals from the cell cycle and microtubules. Our goals for this summer are to determine to role of lipid membrane composition and the cytoskeleton in restricting the scale and position of furrow protein recruitment. This system further extends our collaboration with the MBL Cell Dynamics Center on septin polymerization and dynamics to a vertebrate system that is amenable to single molecule and orientational (by polarized fluorescence) imaging. This work addresses two fundamental problems: 1) how cells locally signal the position their cleavage plane and 2) how septin polymers assemble at the plasma membrane. Additionally, we aim to develop mRNA expression for the Xenopus interphase extract to expand and make analysis of a wider array of factors more feasible. 15 Robert Goldman MBL Association: Principal Investigator Institution Contact Information: Northwestern Univ. Medical School Cell and Molecular Biology 303 E. Chicago Ave. Ward Building W11-145 Chicago IL 60611 Email: r-goldman@northwestern.edu Dates at MBL: 6/2/2014 - 8/29/2014 Research Title: Research Description: Nuclear Lamins -- structure and function in nuclei and meiotic spindles Room Assignment: R-305/307 We are studying the structure and function of intermediate filaments. Pierre Gonczy MBL Association: Principal Investigator Institution Contact Information: Swiss Federal Institute of Technology, Lausanne (EPFL) SV1526 Station 19 CH-1015 Lausanne Switzerland Email: pierre.gonczy@epfl.ch Dates at MBL: 6/16/2014 - 7/28/2014 Research Title: Research Description: Investigating mechanisms of centriole elimination Room Assignment: L-118 We plan notably to explore the fate of exogenously provided centrioles in starfish and sea urchin zygotes, as well as the patterns of centriole inheritance in horseshoe crab embryos. 16 Gohta Goshima MBL Association: PI-MBL Research Awardee Institution Contact Information: Nagoya University Division of Biological Science, Graduate School of Science Furo-cho, Chikusa-ku Nagoya Aichi 464-8602 Email: goshima@bio.nagoya-u.ac.jp Dates at MBL: 7/14/2014 - 8/24/2014 Research Title: Research Description: Organelle transport in plant cells Room Assignment: L-104,105 Transport of intracellular cargo such as organelles, vesicles, or proteins along the microtubule is critical for cell function or organisation. In animal cells, the retrograde transport along microtubules is executed by the cytoplasmic dynein motor. Interestingly, although land plants lack cytoplasmic dynein, we recently observed retrograde transport of chloroplasts and mitochondria, two large organelles in the cytoplasm, in the moss Physcomitrella patens. We aim to identify the motor protein responsible for the retrograde transport of these organelles. We will perform time-lapse observation of organelle movement in the absence of the kinesin-type motor proteins in moss cells and perform in vitro motility assays using purified motors. Philip Grant MBL Association: Principal Investigator Institution Contact Information: National Institutes of Health LNC NINDS Bldg 49 Rm 2A35 9000 Rockville Pike Bethesda MD 20892 Email: grantp@ninds.nih.gov Dates at MBL: 6/30/2014 - 9/6/2014 Research Title: Research Description: Topographic regulation of cytoskeletal protein phosphorylation in the squid giant fiber system Room Assignment: R-326 We are interested in the factors regulating the synthesis, assembly,organization and function of cytoskeletal proteins in nerve cells. We find that these proteins, though synthesized in the nerve cell body, are only phosphorylated and assembled in the axon. Phosphorylation of these proteins changes their stability, organization and function. The question is why and how is this compartmentalization regulated? The giant fiber system of the squid possesses giant nerve cells which can be easily separated into axon and cell body and studied biochemically. Several enzymes, e.g., kinases and phosphatases, are principally involved and we are studying their relative activities, mutual interactions, localizations and response to various signaling systems. In this way we hope to understand the metabolic network that determines the organization and function of these proteins in the nerve cell in normal and in neurodegenerative disorders in which the process is deregulated. 17 Jessica Gray MBL Association: Principal Investigator Institution Contact Information: Harvard Medical School Systems Biology 200 Longwood Avenue Boston MA 02115 Email: jessica_gray@hms.harvard.edu Dates at MBL: 5/1/2014 - 5/30/2014 Research Title: miRNAs in hemichordate development: Insights into the evolution of miRNA function Research Description: miRNAs act as post-transcriptional regulators of gene expression networks in a number of developmental processes, multiple evolutionary expansions of miRNAs are associated with increasing complexity. Despite growing evidence for developmental miRNAs in model organisms and genome-wide small RNA studies in numerous species, data is lacking for a functional role of miRNAs in the development of non-model organisms. The question is can evolution of miRNA targets and functions have driven the evolution of developmental pathways or if they are instead uniquely regulated in different lineages. We investigate the developmental expression and function of miRNAs in the direct-developing hemichordate Saccoglossus kowalevskii. Hemichordates and vertebrates share a common ancestor and many developmental signaling pathways, making it an ideal model for uncovering how ancestral miRNAs may have contributed to evolution of development in deuterostome lineage. Small RNA sequencing shows that Saccoglossus miRNAs are dynamically expressed throughout development, suggesting potential roles in a number of developmental processes. Target predictions are being combined with functional perturbations to reveal developmental roles for a number of miRNAs. An initial functional screen has revealed roles for neural miRNAs and confirmed a conserved role for miR-1 in muscle development. Targets and functions of both conserved and non-conserved Saccoglossus miRNAs will be compared with their homologs and functional counterparts in vertebrates. Room Assignment: R-108 William Green MBL Association: Principal Investigator Institution Contact Information: University of Chicago Neurobiology, Pharmacology & Physiology 947 East 58th Street Chicago IL 60637 Email: wgreen@uchicago.edu Dates at MBL: 6/22/2014 - 8/9/2014 Research Title: Super-resolution to analyze post-synaptic density scaffolds and tracking of AMPA-type and NMDA-type glutamate receptors Research Description: Synapses are the basic cellular units modified during learning and memory formation. A major barrier to characterizing synaptic function and plasticity is that the synaptic structures of most interest—presynaptic vesicles, presynaptic active zones, the synaptic cleft, postsynaptic densities (PSDs) and postsynaptic receptors—are mostly below the diffraction-limit of light. While some of these structures are resolvable using electron microscopy (EM), EM cannot assay structures in live tissue or real time, and has significant problems identifying specific molecules and with sample preparation artifacts. These limitations prevent observing how synapses change during plasticity events that underlie memory formation, such as long-term potentiation (LTP) and depression (LTD), as well as synaptic changes occurring during neurodegenerative diseases, such as Alzheimer’s Disease or during neurodevelopmental diseases, such as Autism Spectrum Disorders. In this proposal we apply different super-resolution fluorescence microscopy techniques to live excitatory CNS synapses that improve imaging accuracy and resolution to near that of EM. More specifically, we will test our hypothesis that AMPA-type and NMDA-type glutamate receptors (AMPARs/NMDARs) have unique distributions and mobility within PSDs because of their differential interactions with the scaffold proteins, PSD-95 and SAP97. Room Assignment: R-322 18 Alexander Groh MBL Association: PI-Grass Fellow Institution Contact Information: Technical University of Munich Institute of Neuroscience Biedersteinerstr. 29 Munich Bavaria 80802 Email: alexander.groh@gmail.com Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: The role of electrical synaptic transmission in synchronizing thalamic activity Room Assignment: R-201,223 The role of electrical synaptic transmission in synchronizing thalamic activity The role of synchronized activity in the thalamus is crucial to understanding key brain functions such as perception or attentional shifts. How such synchronized activity is influenced by electrical coupling (EC) in thalamic circuits has been only sparsely addressed. Recent evidence for thalamic EC in the intact brain from my own recordings triggered my interest in addressing this issue in a simplified system (brain slices). This allows the application of both electrophysiological and imaging techniques for a systematic assessment of thalamic EC and a putative function of EC in synchronizing thalamo-cortical activity. Jeffrey Gross MBL Association: Principal Investigator Institution Contact Information: University of Texas at Austin Molecular Biosciences Box C1000 1 University Station Austin TX 78712 Email: jmgross@mail.utexas.edu Dates at MBL: 6/1/2014 - 9/15/2014 Research Title: Research Description: Molecular analysis of eye development in squid Room Assignment: R-211 The Cephalopod eye, along with the vertebrate single-chambered eye and the Drosophila compound eye, are three examples of high-acuity, complex, image-forming eyes. This is a rare organ and ability, found only in the Vertebrata, Cephalopoda, and a few subphyla of the Arthropoda. While much is known about the development and morphogenesis of the vertebrate and Drosophila eye, almost nothing is know about the development of the Cephalopod eye. We have focused on building the squid, Loligo pealeii as a model Cephalopod for eye research, and we have generated a substantial amount of molecular and genomic data to provide a strong foundation for further studies. Experiments this summer will continue our work to characterize eye development in Loligo pealeii. We will quantify the spatial and temporal aspects of progenitor proliferation, determine whether apoptosis shapes the developing eye, generate a fate-map of the stage 18 eye placode, and identify cell-type specific markers for use in the eye to better understand differentiation events. 19 Marc Hammarlund MBL Association: PI-MBL Research Awardee Institution Contact Information: Yale University Genetics and CNNR 295 Congress Ave BCMM 436E New Haven CT 06510 Email: marc.hammarlund@yale.edu Dates at MBL: 6/29/2014 - 8/30/2014 Research Title: Research Description: Mechanism of neuronal circuit homeostasis Room Assignment: L-341 I am studying the undead cells of the ced-3 mutant in C. elegans. ced-3 encodes a caspase critical for programmed cell death, and ced-3 mutants have 131 extra “undead” cells that are normally destined to die (Ellis 1986). Most of these undead cells are thought to differentiate into neurons, and previous studies indicate that at least one of these undead neurons can integrate into functional neuronal circuits (Avery & Horvitz 1987). However, undead cells have not been studied due to a lack of tools. I am building tools to label, isolate, activate, or kill these undead cells. These tools will allow me to investigate the unique biology of the undead cells, and to analyze how they are incorporated into existing physical structures and neuronal circuits. Avram Hershko MBL Association: Principal Investigator Institution Contact Information: Technion- Israel Institute of Technology, Fac. of Medicine Biochemisry 1 Efron St. Haifa Israel 31096 Email: hershko@tx.technion.ac.il Dates at MBL: 7/7/2014 - 8/28/2014 Research Title: Research Description: Control of cell division by ubiquitin-mediated protein degradation Room Assignment: R-311 Programmed ubiquitin-mediated degradation of cell cycle regulatory proteins is essential for the control of cell division. I wish to gain insight into the underlying molecular mechanisms. 20 Yeowool Huh MBL Association: PI-Grass Fellow Institution Contact Information: Korea Institution of Science and Technology Neuroscience L7313, KIST Hawolgok-dong Seonbuk-gu Seoul NA 136791 Email: lum00@kist.re.kr Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: Gating of pain pathways by activity-dependent recruitment of inhibitory circuits Room Assignment: R-201,223 The cortex and the thalamus are intricately coordinated to modulate sensory information. All sensory inputs, except for olfaction, are passed through the thalamus and the characteristic ability of thalamic neurons to switch between tonic and firing has been suggested to play a role in sensory modulation before transmitting sensory signals to the cortex. Of the two firing modes, altered burst firing has been repeatedly implicated with pathological pain condition, which suggests that maintaining a certain form of thalamic bursts could be crucial for controlling pain. Moreover, results of a thalamic stimulation study have shown that electrical stimulations mimicking specific elements of the naturally occurring bursts were important in producing an anti-nociceptive effect. It also suggested that the anti-nociceptive effect may occur via the recruitment of cortical inhibitory interneurons, but actual activation of cortical inhibitory neurons or the type of interneurons recruited by specific burst stimulations has not been directly demonstrated. Therefore, the current study proposes to directly investigate the relationship between cortical inhibitory interneuron activity and thalamic burst stimulations utilizing the slice patch recording technique. Results of the proposed study is expected to determine part of the cortical network involved in the action mechanism of nociceptive signal modulation occurring by thalamic burst stimulations and may possibly offer a therapeutic target for pain control. Elizabeth Jonas MBL Association: Principal Investigator Institution Contact Information: Yale University Internal Medicine PO Box 208020 New Haven CT 06520 Email: elizabeth.jonas@yale.edu Dates at MBL: 6/15/2014 - 9/15/2014 Research Title: Research Description: Mitochondrial ion channels in synaptic transmission Room Assignment: R-213 Mitochondria are necessary for providing energy for cell metabolism. Synaptic transmission is potentiated over the long term during learning. Changes in neuronal metabolism and mitochondrial morphology or positioning may be necessary for long term changes in synaptic transmission that underlie learning. These events could become disrupted in neurodegenerative diseases such as Alzheimer's and Parkinson's disease or during and after stroke. 21 Erik Jorgensen MBL Association: PI-Lillie Awardee Institution Contact Information: University of Utah/HHMI Biology 257 S 1400 E, Room 201 Salt Lake City UT 84112-0840 Email: jorgensen@biology.utah.edu Dates at MBL: 6/27/2014 - 7/27/2014 Research Title: Research Description: Ultrafast endocytosis during LTD Room Assignment: R-310 Activity-dependent change in the number of AMPA receptors in the postsynaptic density is thought to underlie memory formation. Long-term depression is caused by the reduction of AMPA receptors on the surface. Through a collaboration with the Rosenmund lab, we will study endocytosis of AMPA receptors using state-of-the-art methods in electrophysiology and electron microscopy. The Rosenmund lab has developed protocols to characterize long-term depression in hippocampal cell cultures. ‘Flash-andfreeze’ electron microscopy and ‘nano-fEM’ allow the direct observation of membrane or protein dynamics with ~5 millisecond temporal resolution and ~10 nanometer spatial resolution. The synergy of these technologies should allow us to correlate physiology with morphology in a way that has not been previously possible. Leonard Kaczmarek MBL Association: Principal Investigator Institution Contact Information: Yale University Pharmacology 333 Cedar St. PO Box 208066 New Haven Connecticut CT 06520 Email: leonard.kaczmarek@yale.edu Dates at MBL: 6/18/2014 - 9/15/2014 Research Title: Research Description: Regulation of synaptic transmission by BCL proteins Room Assignment: R-213 A key problem in neurobiology is to understand how the properties of neurons become modified so as to produce prolonged changes in the behavior of an animal or human. To understand the mechanisms of prolonged changes in neuronal excitability, our lab has isolated the genes for many ion channels that determine the particular way that a neuron responds to its external inputs. The systems of neurons that we have used to investigate these questions include neurons of squid and the sea hare Aplysia, as well as mammalian neurons. At the MBL we investigate the factors that control opening of ion channels in mitochondria leading to changes in synaptic strength, as well as influencing the death or survival of a neuron in response to changes in its environment. 22 Rolf Karlstrom MBL Association: PI-Grass Imaging Awardee Institution Contact Information: University of Massachusetts Biology 611 N Pleasant Dept. of Biology University of Massachus Amherst MA 01003 Email: karlstrom@bio.umass.edu Dates at MBL: 7/7/2014 - 8/23/2014 Research Title: Research Description: Fate Mapping the Zebrafish Pituitary Gland Room Assignment: R-421 The vertebrate pituitary gland and lens originate as cranial placodes at the anterior margin of the developing nervous system. Our work suggests that the zebrafish pituitary placode is patterned very early in development, with distinct regions of the adenohypophysis being established soon after induction of the pituitary placode at the anterior margin of the neural keel. This summer I will be examining the morphogenetic movements that give rise to the pituitary gland and lens. I will use 4-dimensional cell tracking methods to create a fate map of the anterior margin of the CNS, the region that gives rise to pituitary and lens tissue. These studies will contribute to our understanding of the origins of the pituitary and lens. Given the conservation in pituitary structure and function across vertebrate species, this work in zebrafish can inform studies in mammals and provide insight into the mechanisms underlying human birth defects that affect the pituitary and ventral forebrain. U. Benjamin Kaupp MBL Association: Principal Investigator Institution Contact Information: Research Center caesar Molekulare Neurosensorik Ludwig-Erhard-Allee 2 Bonn NRW 53175 Email: u.b.kaupp@caesar.de Dates at MBL: 7/1/2014 - 8/30/2014 Research Title: Research Description: Chemotactic signaling pathway in sea urchin sperm Room Assignment: R-312 23 James Kittelberger MBL Association: PI-Grass Lab Associate Director Institution Contact Information: Gettysburg College Biology 300 N. Washington St. Gettysburg PA 17325 Email: mkittelb@gettysburg.edu Dates at MBL: 5/20/2014 - 8/31/2014 Research Title: Research Description: Catecholamine modulation of vocal circuit function in a teleost fish. Room Assignment: R-201,223 My primary research goal is to explore how the catecholamine neurotransmitters modulate social vocal behavior in a species of teleost fish, the plainfin midshipman. Recent experiments in my lab have demonstrated that catecholamines are expressed in the vocal circuit of the midshipman brain; that their expression is sexually dimorphic (Goebrecht et al., 2014); that injections of dopamine (DA) to one portion of the vocal circuit (the periaqueductal gray) rapidly and reversibly inhibit vocal production; and that this dopamine-induced vocal inhibition is mediated both by D1- and D2-type dopamine receptors. One possibility, consistent with DA’s well-established role as a mediator of appetitive rewards across vertebrates, is that DA release is triggered by the arrival of a gravid female in the nest of a courting male. In this situation, males cease courtship vocalizations and initiate copulatory behavior. The next steps in testing this hypothesis are to determine a) specifically which populations of catecholamine neurons innervate specific portions of the vocal circuit, and b) the behavioral contexts (social, vocal, auditory, etc) in which catecholamine neurons are active. The first goal will be addressed by injecting neuronal tracers into the midshipman vocal circuit, coupled with immunohistochemical labeling for the catecholamine synthesizing enzyme tyrosine hydroxylase (TH). The second goal will be achieved using immediate-early genes to map patterns of activity in midshipman brains in vocally-active and non vocally-active fish, with a particular emphasis on the activity of catecholamine neurons, as identified by TH-labeling. David Kovar MBL Association: PI-MBL Research Awardee Institution Contact Information: The University of Chicago Molecular Genetics and Cell Biology 920 East 58th St Chicago IL 60637 Email: drkovar@uchicago.edu Dates at MBL: 7/13/2014 - 8/2/2014 Research Title: Research Description: Homeostatsis F-actin networks compete for actin monomers Room Assignment: L-104,105 Cells utilize multiple actin assembly factors such as Arp2/3 complex and formin to assemble diverse F-actin networks within a common cytoplasm for diverse processes. These F-actin networks are usually investigated separately. However, we recently discovered that competition between Arp2/3 complex and formin for a limited pool of actin monomers helps regulate the size and density of F-actin networks in fission yeast. To begin to understand the extent to which the actin cytoskeleton in diverse cell types are similarly regulated, we plan to assess the consequences on F-actin network density upon treating different cells with small molecular inhibitors specific for particular actin assembly factors (CK-666: Arp2/3 complex; SMIFH2: Formin). 24 Wei-Lih Lee MBL Association: PI-MBL Research Awardee Institution Contact Information: UMass Amherst Biology Department 221 Morrill South 611 North Pleasant St Amherst MA 01003 Email: wlee@bio.umass.edu Dates at MBL: 6/23/2014 - 8/15/2014 Research Title: Research Description: Mechanism of ER attachment and polarization during nuclear migration in S.cerevisiae Room Assignment: L-104,105 How organelles polarize and segregate during asymmetric cell division is not known. We have uncovered a role for Num1, the membrane attachment factor for dynein, in asymmetric polarization of endoplasmic reticulum (ER) during nuclear migration in budding yeast S. cerevisiae. In cells lacking Num1, asymmetric bud cell-directed fenestration of nuclear envelope-associated ER (nER) is lost. This summer at MBL, using rapid multi-color fluorescence imaging techniques, we will identify and characterize the steps involved in the initiation of ER polarization. This study will provide mechanistic insights into the role of Num1 and dynein in ER segregation. Rodolfo Llinas MBL Association: Principal Investigator Institution Contact Information: New York University School of Medicine Physiology & Neuroscience 550 First Avenue 4th Floor, Rm. 442 New York City NY 10016 Email: rodolfo.llinas@nyumc.org Dates at MBL: 5/1/2014 - 10/31/2014 Research Title: Research Description: Transmitter release in the squid giant synapse Room Assignment: R-207,208,209 Experiments will be performed to determine the mechanism by which synaptic transmitter is released into the giant synapse of the squid stellate ganglia. 25 Artur Llobet MBL Association: PI-MBL Research Awardee Institution Contact Information: Bellvitge Biomedical Research Institute / Univ. Barcelona Neuroscience Feixa Llarga s/n Pavello de Govern-Lab. 4112 L'Hospitalet de Llobregat Catalonia/Ba 08907 rcelona Email: allobet@ub.edu Dates at MBL: 6/16/2014 - 8/4/2014 Research Title: Research Description: Rewiring of sensory inputs in the Xenopus brain Room Assignment: Lb NXR G12 Some amphibians are capable to recover the functionality of their sensory inputs after suffering traumatic injuries. Following a lesion, their neuronal circuits can be repaired and synaptic connections restored to normal function. Using transgenic Xenopus tadpoles, I aim to understand how synaptic connections established by olfactory sensory neurons recover the capacity to transmit information after injury. My experimental methods are based in morphological approaches and measurements of intracellular calcium changes in vivo. Results will shed light on mechanisms controlling formation, maturation and elimination of synapses during rewiring of neuronal networks. Christopher Lowe MBL Association: Principal Investigator Institution Contact Information: Hopkins Marine Station of Stanford University Biology 120 Oceanview Blvd. Pacific Grove CA 93950 Email: clowe@stanford.edu Dates at MBL: 9/1/2014 - 9/30/2014 Research Title: Research Description: Insights from hemichordates Room Assignment: Utilization of the early development in hemichordates as a system to gain a better understanding of aspects of axis formation in ancestral lineages leading to modern chordates. 26 Jane Maienschein MBL Association: Principal Investigator Institution Contact Information: Center for Biology and Society School of Life Sciences 874501 Arizona State University Tempe Arizona 85287-4501 Email: maienschein@asu.edu Dates at MBL: 5/17/2014 - 9/16/2014 Research Title: Research Description: MBL History Digital Archives Project Room Assignment: Library, L-228 Based in a digital repository (hpsrepository.asu.edu), we have developed a set of digital and computational projects. These include the online Embryo Project Encyclopedia (embryo.asu.edu) and MBL Archives Project (history.archives.mbl.edu). In 2014, the lab will focus on digitizing historically important scientific collections such as the Viktor Hamburger and the J.P. Trinkaus Collections and other materials related to ecosystems, adding metadata, and developing interpretive exhibits. We welcome contributions of material, stories, or interpretations. This work is funded by several grants from the NSF and Arizona State University. Robert Malchow MBL Association: Principal Investigator Institution Contact Information: University of Illinois at Chicago M/C 067 840 West Taylor Street Chicago IL 60607 Email: paulmalc@uic.edu Dates at MBL: 6/17/2014 - 8/23/2014 Research Title: Research Description: Measurement of H+ and zinc transport; release from retinal neurons and glial cells Room Assignment: MRC-306 H+ has been suggested to play a key neuromodulatory role in the shaping of visual signals. We plan to examine the regulation of H+ transport from several types of retinal neurons and support cells and to examine the effects of H+ on voltage gated conductances and various transport mechanisms present in these cells. We will examine these effects on isolated cells maintained in primary culture and in cultured retinal slices. The results from these experiments are expected to significantly clarify the role that H+ plays in retinal processing. 27 Reyna Martinez-De Luna MBL Association: PI-Grass Fellow Institution Contact Information: SUNY Upstate Medical University Ophthalmology 5325 Weiskotten Hall Addition 117 Monroe St. Syracuse New York 13210 Email: martiner@upstate.edu Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: The role of intermediate filament proteins in neural degeneration and regeneration Room Assignment: R-201,223 The expression of intermediate filament proteins (IFPs) in glial cells has been implicated in the inability of some vertebrates to regenerate the central nervous system. Taking advantage of the ability of Xenopus laevis to regenerate the retina, I will use the XOPNTR transgenic line, a model of rod degeneration and regeneration, to determine the role of IFPs in these two processes. Specifically, I will investigate if the IFPs glial fibrillary acidic protein (GFAP) and Vimentin are important regulators of retinal degeneration and the ability of the Xenopus retina to regenerate. The results of this study will determine if upregulation of GFAP and Vimentin IFPs is required for Müller cell reactivity, retinal degeneration and restricting the regenerative capacity of the retina. Rebecca Mease MBL Association: PI-Grass Fellow Institution Contact Information: Technical University of Munich Institute of Neuroscience Biedersteiner Str. 29 Munich Bavaria 80802 Email: beckin@gmail.com Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: A conductance-based model of higher-order thalamic encoding of cortical feedback Room Assignment: R-201,223 Corticothalamic feedback projections in the mammalian brain exert strong control over single thalamic neurons, thereby shaping how information propagates in thalamocortical circuits implicated in sensation and global brain states. In the rodent whisker system, one such pathway is cortical layer 5B (L5B) to posterior medial (POm) thalamus, which can drive spiking in thalamic target neurons and serves to integrate cortical activity with incoming sensory information. Due to the combination of pronounced synaptic depression and intrinsic POm bursting, spike transfer from L5B to POm is highly nonlinear and dependent on past activity. I propose to model this pathway by fitting a detailed model of POm neurons and L5B depressing synapses. The resulting model will be used to investigate thalamic encoding of low- and high- frequency information present in in vivo L5B spike trains. 28 Allen Mensinger MBL Association: Principal Investigator Institution Contact Information: University of Minnesotat Duluth Biology 1035 Kirby Dr Duluth MN 55812-3003 Email: amensing@d.umn.edu Dates at MBL: 6/15/2014 - 8/25/2014 Research Title: Research Description: Multisensory integration in toadfish Room Assignment: MRC-306 Recent experiments have demonstrated that the toadfish lateral line is sensitive to sound as well as water vibrations and that the utricle is sensitive to sound and linear movements. Our goal is to determine how both these systems integrate multimodal sensory integration Andrew Miller MBL Association: Principal Investigator Institution Contact Information: HKUST Division of Life Science Clear Water Bay Kowloon Hong Kong New HK SAR Territories Email: almiller@ust.hk Dates at MBL: 6/1/2014 - 9/30/2014 Research Title: Research Description: Role of calcium signaling during embryonic development Room Assignment: R-220 We study the role played by calcium signaling in the orchestration of embryonic development using a number of vertebrate and invertebrate model systems. 29 Timothy Mitchison MBL Association: PI-MBL Research Awardee Institution Contact Information: Harvard Medical School Systems Biology WA 536 200 Longwood Av Boston MA MA 02115 Email: timothy_mitchison@hms.harvard.edu Dates at MBL: 6/22/2014 - 8/31/2014 Research Title: Research Description: Limiting components for mitotic spindle assembly Room Assignment: R-205,215 Early embryos are physically organized by asters; large, radial arrays of microtubules that grow out from centrosomes. Asters are responsible for centering the centrosome and nucleus in the egg or blastomere, and the cleavage furrows are positioned at the interaction plane between two asters. We will study how aster grow and interact in Xenopus eggs. These are huge cells (1.2mm in diameter), which emphasize the scaling challenges inherent in organizing a cell on the micron scale using molecular processes on the nm scale. Working at MBL 2009-12 we developed methods for reconstituting large embryo asters and the interactions between them in extracts from Xenopus eggs. These methods allow biochemical manipulation and high resolution live imaging. In 2013 we will address two problems, how do aster grow out from centrosomes, and how do they interact to form planes that subdivide the embryo and signal cleavage furrow position? We have evidence that asters grow by a process where microtubules nucleate from the sides of pre-existing microtubules. In summer 2013 we will build mathematical models of this process and refine them using microscopy data. We will also try to dissect the molecular mechanism by which microtubules nucleate. We will image and quantify microtubule dynamics in aster-aster interaction zones, and determine the role in interaction zone formation of several new molecular players, including three motor proteins, Kif4, Kif20A and Kif23. Our project will increase conceptual understanding of how early embryos self-organize in space and time. It may also provide clues to cell organization mechanisms in other large cells such including neurons. 30 Gerardo Morfini MBL Association: Principal Investigator Institution Contact Information: University of Illinois Anatomy and Cell biology 808 S. Woods St CME Rm#568 Chicago IL 60612 Email: gmorfini@uic.edu Dates at MBL: 7/1/2014 - 9/1/2014 Research Title: Research Description: Molecular mechanisms for fast axonal transport in health and disease. Room Assignment: R-108,109 The exquisitely organized distribution of cellular components within discrete subcellular compartments underlies the unique ability of neurons to receive, process, and transmit information. Precise targeting and delivery of these components in mature neurons largely depends upon axonal transport (AT), a cellular process largely mediated by the molecular motor proteins conventional kinesin and cytoplasmic dynein (CDyn). An illumination of molecular mechanisms regulating AT is critical for a comprehensive understanding of neuronal function. In this context, our recent studies identified specific protein kinases that regulate AT by phosphorylating specific motor proteins subunits. Strong genetic evidence in recent years demonstrated that human neurodegenerative diseases can result from alterations in AT. Accordingly, alterations in protein phosphorylation and kinase activity have been widely documented in several neurological conditions including Alzheimer’s, Huntington’s, and Parkinson’s diseases. This observation led us to hypothesize that alterations in AT associated with abnormal kinase activity represent a critical pathogenic event in these diseases. Providing support to this hypothesis, results from our research showed that pathogenic proteins associated with familiar forms of neurodegenerative diseases differentially affect AT through various mechanisms involving selective activation of kinases and abnormal phosphorylation of molecular motors. The goals of our research program are: 1) to elucidate normal regulatory mechanisms of AT in neuronal cells; and 2) to determine how alterations in AT contribute to the pathogenesis of human neurodegenerative conditions. Adult-onset neurodegenerative diseases represent one of the most difficult and puzzling disorders faced by modern medicine. The clinical relevance of our research relates to an understanding of molecular mechanisms underlying these diseases. An illumination of such mechanisms will provide a conceptual framework for the development of novel therapeutic strategies. Tetsuya Nakamura MBL Association: Principal Investigator Institution Contact Information: The University of Chicago Organismal Biology and Anatomy 1012Ellis ave. 57 Street Culver Hall 106 Chicago IL 60637 Email: tetsuya@uchicago.edu Dates at MBL: 6/20/2014 - 8/31/2014 Research Title: Deeply conserved hox collinearity autonomously produces diversified fin patterns and evolution depending on appendage size Research Description: During the transition from fish fins into tetrapod limbs, appendage morphology shows diversified skeletal patterns as seen in a number of fossils and extant animals. Examples of this disparity can be seen in the anteriorly elongated large cartilage of some cartilaginous fish fins, as well as the autopod region which is exclusive to limbed animals. However, the molecular mechanisms that produce such diversity and allow evolution from fins into limbs are still unknown. I will investigate how appendage shape is controlled by studying the genetic mechanisms of fin development in cartilaginous fish and comparing these molecular players with those of other animals. Room Assignment: MRC-306 31 John Oakey MBL Association: Principal Investigator Institution Contact Information: University of Wyoming Department of Chemical and Petroleum Engineering 1000 E University Ave Laramie WY 82071 Email: joakey@uwyo.edu Dates at MBL: 6/15/2014 - 8/15/2014 Research Title: Research Description: Manipulating Xenopus Extract with Microfluidics to Elucidate Scaling Mechanisms Room Assignment: R-206 The size, shape, and overall morphology of a given intracellular organelle is often critical to its function. The nucleus and mitotic spindle are particular examples of this rule, but how the sizes of the mitotic spindle and interphase nucleus are regulated within a cell remains largely unknown. This gap in knowledge prevents us from understanding the functional significance of organelle size control, particularly in the context of various cancers in which the scaling relationship between organelle and cell size has gone awry. We have developed a microfluidic platform for encapsulating cell-free extracts, allowing us to address previously intractable questions regarding organelle scaling. The long-term goal of this work is the identification of organelle size regulation mechanisms in order to better understand how organelle size and morphology impact cell function. Specifically, we will address the question of how physical constraints imposed by cell-size impact the size, shape, and function of the mitotic spindle and its machinery. Harish C Pant MBL Association: Principal Investigator Institution Contact Information: NINDS/ NIH LNC Bldg 49, Room 2A-28 Bethesda MD 20892 Email: panth@ninds.nih.gov Dates at MBL: 6/15/2014 - 9/3/2014 Research Title: Research Description: Topographic Regulation of cytoskeletal protein phosphorylation in the squid giant fiber system Room Assignment: R-326 We are interested in the factors regulating the synthesis, assembly,organization and function of cytoskeletal proteins in nerve cells. We find that these proteins, though synthesized in the nerve cell body, are only phosphorylated and assembled in the axon. Phosphorylation of these proteins changes their stability, organization and function. The question is why and how is this compartmentalization regulated? The giant fiber system of the squid possesses giant nerve cells which can be easily separated into axon and cell body and studied biochemically. Several enzymes, e.g., kinases and phosphatases, are principally involved and we are studying their relative activities, mutual interactions, localizations and response to various signaling systems. In this way we hope to understand the metabolic network that determines the organization and function of these proteins in the nerve cell in normal and in neurodegenerative disorders in which the process is deregulated. 32 Roy Parker MBL Association: Principal Investigator Institution Contact Information: Univ of Colorado Chemistry and Biochemistry JSC Biotech Building 596 UCB Boulder CO 80309 Email: roy.parker@colorado.edu Dates at MBL: 6/16/2014 - 8/1/2014 Research Title: Research Description: Control of mRNA localization, translation and degradation Room Assignment: R-319,320,321 The Parker lab studies the control of mRNA localization, translation and degradation in eukaryotic cells. This includes the analysis of the mRNP assemblies referred to as stress granules and P-bodies, which are conserved cytoplasmic aggregates of nontranslating mRNPs implicated in the regulation of mRNA translation and decay, and are related to RNP granules in embryos, neurons and in some neurodegenerative diseases. Projects in the lab include reconstitution of mRNP granules, determining their modes of assembly and disassembly, and their biological functions. Alberto Pereda MBL Association: PI- Grass Lab Director Institution Contact Information: Albert Einstein College of Medicine Neuroscience 1300 Morris Park Ave Bronx New York 10461 Email: alberto.pereda@einstein.yu.edu Dates at MBL: 5/23/2014 - 9/1/2014 Research Title: Research Description: Regulated trafficking of gap junction channels at electrical synapses. Room Assignment: R-201,223 The goal of my laboratory is to understand the complexity and regulatory mechanisms underlying gap junction mediated electrical transmission. We investigate these properties at auditory afferents forming as mixed (electrical and chemical) synaptic contacts on the goldfish Mauthner cell. Because of their unique experimental accessibility, these terminals are ideally suited for studies of electrical transmission. The strength of these electrical synapses is under the fine regulatory control of neuronal activity. My proposal deals on understanding the molecular mechanisms underlying the bi-directional control of junctional conductance at these terminals by focusing in the role of regulated trafficking of gap junction channels. Thus, my research addresses the novel concept that the strength of electrical synapses is achieved by dynamically regulating the trafficking of gap junction channels. 33 Lawrence Rome MBL Association: Principal Investigator Institution Contact Information: University of Pennsylvania Biology Department Leidy Labs Philadelphia PA 19104 Email: lrome@sas.upenn.edu Dates at MBL: 6/1/2014 - 8/31/2014 Research Title: Research Description: Calcium movements in superfast muscle of toadfish Room Assignment: R-313 I study how muscles are designed to perform different activities particularly superfast muscles found in toadfish, rattlesnakes and birds. Eduardo Rosa-Molinar MBL Association: PI-Grass Imaging Awardee Institution Contact Information: University of Puerto Rico-Rio Piedras Biological Imaging Group P.O. Box 21809 UPR Station San Juan Puerto Rico 00931 Email: ed@hpcf.upr.edu Dates at MBL: 6/28/2014 - 8/3/2014 Research Title: Connexin composition of gap junction hemiplaques at mixed synapses between identifiable dye-coupled spinal neurons revealed by super-resolution fluorescence imaging Research Description: Electrical synapses, hereafter gap junctions, are thought to be central to integrating and regulating basic cell processes and to synchronizing fast motor behavior, but most gap junction studies have focused on gap junctions’ role in development, perhaps because they are generally thought not to persist into adulthood. Based on prior studies of gap junctions and on our on-going studies of our “reference species”, the adult the Western Mosquitofish, Gambusia affinis (hereafter Mosquitofish), we propose to determine the type, number, and extent of synapses in the neural circuitry responsible for an extremely rapid coital movement (20 -50 ms) of the sexually dimorphic internal fertilizing adult male Mosquitofish. During my summer, 2014 tenure at the Marine Biological Laboratory, I will develop a novel imaging workflow for whole-mount preparations that integrates direct STochastic Optical Reconstruction Microscopy (dSTORM), grid-mapped freeze-fracture-matched-double-replica-immunogold-labeling, and serial block-face imaging using a gallium focused ion beam low voltage field emission scanning electron microscopy. The imaging workflow will enhance the ability to: 1) accurately locate gap junctions at mixed synapses; 2) unambiguously identify one or two constituent synaptic proteins found at mixed synapses; and 3) determine membrane “sidedness.” This imaging workflow has tremendous potential to provide new views and insights into the structure and molecular organization of gap junctions at mixed synapses. Room Assignment: L-208 34 Robert Rose MBL Association: PI-MBL Research Awardee Institution Contact Information: North Carolina State University Biochemistry 128 Polk Hall Raleign NC 27695-7622 Email: bob_rose@ncsu.edu Dates at MBL: 6/18/2014 - 7/31/2014 Research Title: Research Description: Transcriptional regulation of pancreas development Room Assignment: R-401,423 My lab at North Carolina State University studies the interactions among transcription factors that regulate pancreas development, using protein crystallography and cell culture assays. This summer I will be working with Marko Horb at the National Xenopus Resource to characterize the role of a transcription factor complex, between the factors Pdx1 and Pbx1. Pdx1 is a master regulator of pancreas development and we propose that its interaction with Pbx1 regulates proliferation, a critical aspect of development. We plan to up-regulate and down-regulate Pdx1 and Pbx1 at various stages of Xenopus development and measure expansion of pancreatic exocrine and endocrine cells. Since Pdx1 regulates hundreds of genes, we have generated a Pdx1-Pbx1 fusion to restrict activity to sites regulated by the complex. Michael Rosen MBL Association: Principal Investigator Institution Contact Information: UT Southwestern Medical Center Biophysics 5323 Harry Hines Blvd. Dallas Texas 75390 Email: michael.rosen@utsouthwestern.edu Dates at MBL: 6/16/2014 - 6/28/2014 Research Title: Research Description: Partitioning and polymerization--mechanisms for regulating protein activity Room Assignment: R-319,320,322 Research at the Summer Institute is directed toward understanding how micron sized cellular structures at membranes and in the cytosol are generated through the polymerization and phase separation of macromolecules and lipids. 35 Joshua Rosenthal MBL Association: PI-MBL Research Awardee Institution Contact Information: Universidad de Puerto Rico/Recinto de Ciencias Medicas Institute of Neurobiology 201 Blvd. del Valle San Juan Puerto Rico 00901 Email: joshua.rosenthal@upr.edu Dates at MBL: 6/20/2014 - 8/10/2014 Research Title: Research Description: Development of a resource for transcripomes from non-model organisms Room Assignment: R-219 Advancements in next-generation DNA sequencing technologies allow us to generate large sequence databases from any organism at a low cost. Our group, in close collaboration with Dr. Titus Brown, aims to create an open access resource for cephalopod transcriptomes and genomes, and also a freely accessible set of tutorials so that others can generate similar resources. Accordingly, last summer we generated five different transcriptomes from the nervous system of Loligo pealei (http: //ivory.idyll.org/blog/2014-loligo-transcriptome-data.html) and also created the “ Eel Pond mRNAseq tutorials (https://khmerprotocols.readthedocs.org/en/latest/mrnaseq/index.html). This summer we plan to significantly expand the number of Loligo transcriptomes and to set up a server to host these resources at the MBL. Benjamin Rost MBL Association: PI-Grass Fellow Institution Contact Information: German Center for Neurodegenerative Diseases (DZNE) Charité - CCO, Schmitz group Charitéplatz 1 intern Virchowweg 6 Berlin Berlin 10117 Email: benjamin.rost@charite.de Dates at MBL: 5/23/2014 - 8/30/2014 Research Title: Research Description: Physiological correlates of fast postsynaptic endocytosis Room Assignment: R-201,223 In hippocampal neurons, long-term depression (LTD) can be induced by prolonged low-frequency stimulation and activation of NMDARs, or activation of metabotropic glutamate receptors. LTD may also be caused by presynaptic transmitter release shortly after a postsynaptic back-propagating action potential that has unblocked synaptic NMDARs (pairing LTD). In consequence, clathrin mediates endocytosis of AMPARs residing outside of the postsynaptic density, on a time-scale of 20 s and longer. Recent experiments using precisely timed optogenetic stimulation and high-pressure freezing followed by electron-microscopy provided evidence for much faster postsynaptic endocytic events. If rapid postsynaptic endocytosis removes AMPARs from the surface it should cause synaptic depression. To test this hypothesis, I will determine the kinetics and the extent of fast AMPAR endocytosis in living neurons. In combination with genetic or pharmacological manipulations, I will then investigate the molecular machinery underlying this novel form of AMPAR surface regulation. 36 Paul Selvin MBL Association: PI-Grass Imaging Awardee Institution Contact Information: University of Illinois Urbana Champaign Physics 1110 W. Green St. Illinois Urbana 61801 Email: Selvin@UIUC.edu Dates at MBL: 6/15/2014 - 7/25/2014 Research Title: Organization and Dynamics of PSD-bound Glutamate Receptors by Fluorescence Super-Resolution Microscopy. Research Description: Synapses are the basic cellular units modified during learning and memory formation. A major barrier to characterizing synaptic function and plasticity is that many of the synaptic structures are below the visible diffraction-limit of light, or ~250 nm. We are developing super-resolution fluorescence technique which are able to image live synapses in cultured neurons of rat hippocampi to about 10-20 nm in x-y and about 25-40 nm in z. Furthermore, we have developed small quantum dots (~ 8 nm) as labels which are able to get into the synaptic cleft and hence label synaptic receptors such as AMPAR and NMDAR. These are visible at the single-molecule, have ~30x the usual brightness of fluorescent dyes, and are essentially indestructible. As a result, we can follow the behavior of labeled single receptors with 10-100 millisecond time resolution. So far, we have found that AMPA-receptors are surprising free to diffuse within the synaptic densities Room Assignment: R-322 Roger Sloboda MBL Association: Principal Investigator Institution Contact Information: Dartmouth College Biological Sciences 306 Gilman Hanover NH 03755 Email: rds@dartmouth.edu Dates at MBL: 6/20/2014 - 8/30/2014 Research Title: Research Description: Room Assignment: L-121 Assembly and disassembly of cilia and flagella Cells with cilia and flagella must disassemble these organelles at each cell division in order to free the basal bodies for participation in the assembly of the mitotic apparatus. We are focused currently on a protein methylation pathway that is activated upon disassembly, and gather cila from marine organisms at the MBL for comparative studies. 37 Greenfield Sluder MBL Association: Principal Investigator Institution Contact Information: UMass Medical School Cell and Developmental Biology S6-212 55 Lake Ave. North Worcester MA 01655 Email: greenfield.sluder@umassmed.edu Dates at MBL: 5/1/2014 - 10/1/2014 Research Title: Research Description: Investigation of the controls for centrosome duplication Room Assignment: R-308 My research at the MBL uses sea urchin zygotes as a favorable experimental system to study the mechanisms that control centrosome duplication (the one to only two doubling in preparation for mitosis). My work this summer will continue research initiated last summer that focuses on the mechanisms that control the splitting of centrosomes which is a necessary event for later centrosome duplication. I have published an interesting but unexplained phenomenon in which centrosomes split only once during prolonged mitosis in sea urchin zygotes. This phenomenon does not fit in any simple way the current understanding of what drives centrosome splitting. I will seek to provide insight into this phenomenon by using new small molecule inhibitors of key enzymes (catalytic proteins) that have been implicated in centrosome splitting during other phases of the cell cycle. The goal is to use an unusual phenomenon to provide more information on the normal mechanisms that control centrosome duplication and prevent overduplication/reduplication of the centrosome (as is found in some cancer cells). Yuyu Song MBL Association: PI-Grass Fellow Institution Contact Information: HHMI/Yale Medical School Genetics 295 Congress Avenue BCMM 154 Box 9812 New Haven CT 06536-0812 Email: yuyu.song@yale.edu Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: Synaptic Actions of misfolded ALS-associated G*%R-SOD1 protein Room Assignment: R-201,223 Amyotrophic lateral sclerosis (ALS) is a lethal neurodegenerative disease that affects motor neurons and causes progressive muscle weakness, atrophy and paralysis. The best studied subtype of ALS results from mutations in the SOD1 gene (e.g. G85R), whose protein products are misfolded and may cause dysfunction of neuromuscular junctions (NMJ), loss of synapses, “dyingback” degeneration of axons, and neuronal death. Early changes in NMJ suggest an essential role of synaptic dysfunction in ALS pathology. However, the molecular mechanism for the altered synaptic function in ALS is poorly understood, partially due to the lack of a motor neuron system where acute effects can be studied. Using a unique model of squid giant synapse, I will start to answer questions like whetherG85R-SOD1 directly inhibits synaptic transmission, if so, what is the underlying molecular mechanism? Can we prevent or rescue synaptic dysfunction with chaperones? These approaches will help us understand ALS neuropathology, as well as identify potential therapeutic targets for clinical intervention. 38 Timothy Springer MBL Association: Principal Investigator Institution Contact Information: Childrens Hospital/ Harvard Medical School BCMP CLSB, 3 Blackfan Circle Boston MA 02115 Email: springer@crystal.harvard.edu Dates at MBL: 5/30/2014 - 9/7/2014 Research Title: Research Description: Cell biology of integrins. Room Assignment: R-305 Our structural work on integrins shows that they assume three overall conformational states. A resting low-affinity state is bent. Another low-affinity state is extended. The high-affinity state is extended, with a swung out hybrid domain. Swing-out of 70 Å at the knees is communicated by a rigid lever arm and alpha-helix pistoning to a 3 Å movement at the ligand binding site. This large amplification seems important to transmit allostery through the flexible integrin lower legs. We hypothesize that tensile force imposed by the actin cytoskeleton on the integrin beta subunit cytoplasmic domain, and resisted by ligands bound to the extracellular matrix or on the surface of other cells, is on pathway with allosteric change to the high affinity state. In other words, force acts as an allosteric effector, and couples ligand binding by integrins to their attachment to the actin cytoskeleton. We propose this as a mechanism to give cells four-wheel drive; it avoids integrins spinning their wheels in regions of a cell where they cannot grip the substrate. We have supported this hypothesis with steered molecular dynamics simulations and studies with conformation-selective antibodies that demonstrate the relation of conformational state to affinity for ligand. At MBL we are testing this hypothesis in cells using advanced fluorescence polarization microscopy techniques. Sidney Tamm MBL Association: Principal Investigator Institution Contact Information: Marine Biological Laboratory Bell Center 7 MBL Street Woods Hole MA 02543 Email: tamm@bu.edu Dates at MBL: 6/15/2014 - 10/15/2014 Research Title: Research Description: Regeneration and Motility of Ctenophores Room Assignment: R-113 Regeneration of ciiiary comb plates, formation of the statolith, and locomotion and coordination of comb rows in ctenophores. 39 Mark Terasaki MBL Association: Principal Investigator Institution Contact Information: University of Connecticut Health Center Cell Biology 263 Farmington Ave Farmington CT 06032 Email: terasaki@uchc.edu Dates at MBL: 5/15/2014 - 10/31/2014 Research Title: Three dimensional organization of the endoplasmic reticulum Research Description: We recently discovered a new structural motif of the endoplasmic reticulum consisting of helical ramps that connect parallel sheets. We will be looking for more structural features involving tubules and the connections between tubules and sheets. We will also work on serial section immunolabeling to localize functions or structural proteins to sub-regions of the endoplasmic reticulum. Room Assignment: R-113 Steven Treistman MBL Association: Principal Investigator Institution Contact Information: Univ. Puerto Rico Medical Sciences Institute of Neurobiology, 201 Blvd del Valle San Juan PR 00901 Email: steven.treistman@upr.edu Dates at MBL: 6/1/2014 - 9/30/2014 Research Title: Research Description: Puerto Rico Center for Environmental Neuroscience Room Assignment: R-219 The nervous system is the interface between an organism and its environment. The Puerto Rico Center for Environmental Neuroscience (PRCEN) will combine neuroscience (the study of the nervous system and behavior) and environmental science (the study of local ecosystem environments) to tackle environmental issues in Puerto Ricos tropical setting. The Center will combine neuroscientists from the Institute of Neurobiology and the Dept. of Anatomy of the UPR Medical Sciences campus and environmental scientists from the Environmental Sciences Program and the Depts. of Biology and Chemistry of the UPR Rio Piedras campus. The alliance will bring together cutting-edge techniques normally associated with cellular and molecular neuroscience with expertise in local ecosystems and environmental science to create a novel field. 40 Ron Vale MBL Association: Principal Investigator Institution Contact Information: UCSF Cellular and Molecular Pharmacology 600 16th Street UCSF Genentech Hall n312 San Francisco CA 94158 Email: vale@cmp.ucsf.edu Dates at MBL: 6/15/2014 - 8/31/2014 Research Title: Research Description: HCIA-Summer Institute Program Room Assignment: R-319,320,321 Neurons are distinct from most cell types in that they are highly elongate. At one end of the neuron is the cell body (which houses the nucleus and DNA) and at the other end resides the nerve terminal that communicates signals to other cells. In between is a very long and thin tube called the axon (which can be a meter long in humans). The outer membrane of the axon serves as an electrical conduit while the interior is designed to serve as a highway to transport building blocks between the cell body and the nerve terminal. The actual tracks or roadways of this highway are called microtubules, long polymers made up of a protein called tubulin. The goal of this summer project is to understand axonal microtubules, specifically how they are made and how they change over time. Shigeki Watanabe MBL Association: PI-Grass Fellow Institution Contact Information: University of Utah Biology 257 South 1400 East Salt Lake City UT 84112 Email: watanabe@biology.utah.edu Dates at MBL: 5/26/2014 - 8/20/2014 Research Title: Research Description: Mechanisms of synaptic plasticity in mouse hippocampal synapses Room Assignment: R-201,223 Use-dependent synaptic potentiation and depression are thought to underlie memory formation in the mammalian brain. One pathway for long-term depression is mediated by calcium influx through NMDA receptors, which triggers AMPA-type glutamate receptor endocytosis. I have developed two techniques in electron microscopy; "Flash-and-freeze" electron microscopy (EM) combines optogenetic neuronal stimulation ("flash") with rapid, high-pressure freezing ("freeze") to capture endocytosis on a millisecond timescale; nano-fEM combines super-resolution fluorescence microscopy with EM to visualize fluorescently tagged proteins within their sub-cellular context. Using these techniques, I will test how AMPA receptors are endocytosed from the surface. 41 Clare Waterman MBL Association: Principal Investigator Institution Contact Information: National Institutes of Health Cell Biology and Physiology Center 10 Center Drive, Room 7N220 Bethesda MD 20892 Email: watermancm@nhlbi.nih.gov Dates at MBL: 6/10/2014 - 8/5/2014 Research Title: Research Description: Integrin activation and organization by actin dynamics during cell migration. Room Assignment: R-305, 307 The adhesion and migration of cells are critical for their normal function and are governed by the transmembrane receptors integrins, which localize to intracellular complexes called focal adhesions. The activation of integrins allows cells to attach and exert force on their surroundings to migrate. What controls the coordinated activation of integrins is not understood. We want to test a model where the actin cytoskeleton binding to the cytoplasmic side of aVβ3 integrins and mechanically forces them into an active state. Two testable predictions come out of this: aVβ3 integrins are organized in aligned clusters at focal adhesions and that movement and organization of the actin cytoskeleton cause this. We will test these hypotheses with a combination of state-of-theart orthogonal imaging techniques, both of which will be setup at the MBL for the coming two summers. Our preliminary results show that by using specifically designed constructs, we can study integrin alignment using fluorescence emission polarization anisotropy microscopy, and with the novel TIRF PolScope at MBL, we can measure the actual orientation of integrins in migrating cells. With multi-channel acquisition we will simultaneously monitor actin dynamics and focal adhesion markers. This proposed project is a multi-lab collaboration with the Cell dynamics Laboratory at the MBL, where the participating labs each provide the world-leading expertise required to successfully test these hypotheses. In typical “blue sky” thinking approach, this project was conceived as part of the physiology course at the MBL. Within the timeframe of this project we expect to have fully explored the importance of actin dynamics for integrin activation in migrating cells. Integrins are essential proteins and proven drug targets, with several integrin-based biologicals in use to treat patients, including multiple sclerosis and Crohn's disease. A further understanding of their activation mechanism will likely yield new avenues and approaches for future drugs. Jim Wilhelm MBL Association: Principal Investigator Institution Contact Information: UC San Diego Cell and Developmental Biology 9500 Gillman Drive Pacific Hall 2123A La Jolla CA 92093-0347 Email: jwilhelm@ucsd.edu Dates at MBL: 6/14/2014 - 8/16/2014 Research Title: Research Description: HCIA-Summer Institute Program Room Assignment: R-319,320,322 This summer we will be focused on in vitro reconstitution of several novel intracellular filaments that we have discovered. 42 Hao Wu MBL Association: Principal Investigator Institution Contact Information: Boston Children's Hospital and Harvard Medical School Program in Cellular and Molecular Medicine 3 Blackfan circle, Room 3099 Boston MA 02115 Email: hao.wu@childrens.harvard.edu Dates at MBL: 6/16/2014 - 8/1/2014 Research Title: Research Description: HCIA/HHMI Summer Institute Room Assignment: R-319, 320, 321 Meg Younger MBL Association: PI-Grass Fellow Institution Contact Information: UCSF Biochemistry and Biophysics, Davis Lab GDBS, 1550 4th St Rm 445, Box 2822 San Francisco CA 94158 Email: meg.younger@gmail.com Dates at MBL: 5/26/2014 - 8/30/2014 Research Title: Research Description: Processing of human odorants in the mosquito antennal lobe. Room Assignment: R-201,223 Female mosquitoes show intense human host-seeking behavior. Attraction to components of human odor such as lactic acid is enhanced by carbon dioxide (CO2). This sensitization to otherwise unattractive human cues is poorly understood. The aim of my project as a Grass Fellow is to understand how human odor processing occurs downstream of Olfactory Sensory Neurons in the brain of the Dengue fever mosquito, Aedes aegypti. 43 Joshua Zimmerberg MBL Association: Principal Investigator Institution Contact Information: NIH NICHD 10 /10d14 10 CENTER DRIVE MSC 1855 BETHESDA MD 20892-1855 Email: zimmerbj@mail.nih.gov Dates at MBL: 6/15/2014 - 9/7/2014 Research Title: Research Description: Membrane biophysics and lipidomics of the synaptic vesicles of the Woods Hole squid Room Assignment: R-309 The goal of this project is to continue to understand the role that lipid composition plays in determining the physical parameters of the biological membrane, particularly in the contect of the nervous system. Although many theories predict a central role for lipid rafts in the organization of the synaptic membrane, we have discovered that the synaptic vesicle membrane of the squid optic lobe has neither the right lipids to form traditional rafts nor the degree of lipid order needed to form liquid ordered domains. We hypothesize a novel domain, for which last summer (2011) we got preliminary data. In summer 2012 we continued this project, mapping the phase diagram of the synaptosome, which had the same lipid distribution as the synaptic vesicle. We are ready for physiological and behavioral experiments on squid and squid axons as a function of temperature. Steven Zottoli MBL Association: Principal Investigator Institution Contact Information: Williams College Biology 59 Lab Campus Drive Dept. of Biology Williamstown MA 01267 Email: stephen.j.zottoli@williams.edu Dates at MBL: 5/1/2014 - 8/31/2014 Research Title: Research Description: Morphological and physiological studies of dorsal cell/supramedullary neurons in teleost fishes Room Assignment: R-213 Even though the presence of dorsal cell/supramedullary neurons have been known for over 100 years, their function remains a mystery We continue to study the physiological and morphological properties of these large and accessihle neurons to better understand the neuronal basis of behavior. 44 LastName Alford Armstrong Augustine Baker FirstName Simon Peter George Robert AcademicRank Professor Professor Professor Professor Institution University of Illinois at Chicago University of California Duke University Medical Center New York University Langone Medical Center Balmer Bennett Berger Bezanilla Bloom Tim Michael Christopher Magdalena Ona Graduate Student Professor Associate Professor Associate Professor Assistant Professor Bodznick Bohorquez Brady Brangwynne Burgess Chang Chen Cohen David Diego Scott Clifford David Fred Christopher Lawrence Professor Postdoc Professor Assistant Professor Professor Professor Graduate Student Professor Colin Colon-Ramos Costello Dzakpasu Echeverry Sean Daniel John Rhonda Fabio Associate Professor Associate Professor Professor Assistant Professor Graduate Student Field Fritzenwanker Christine Jens -Postdoc Furlow Gadsby Garcia-Arraras Gatlin Gillis Gladfelter Goldman Gonczy John David Jose Jesse James Amy Robert Pierre Professor Professor Professor Assistant Professor Postdoc Associate Professor Professor Professor Goshima Grant Gray Green Groh Gross Hammarlund Hershko Gohta Philip Jessica William Alexander Jeffrey Marc Avram Professor Professor Postdoc Professor Postdoc Associate Professor Assistant Professor Professor Huh Yeowool Graduate Student Georgia State University Albert Einstein College of Medicine University of Vermont University of Massachusetts Amherst Feinstein Institute for Medical Research; Hofstra North Shore Wesleyan University Duke University Medical Center University of Illinois at Chicago Princeton University Boston College Columbia University Albert Einstein College of Medicine Korea Institute of Science and Technology/ Yale Roger Williams University Yale University Providence College Georgetown University Center of Advanced European Studies and Research Harvard Medical School Hopkins Marine Station of Stanford University University of California, Davis Rockefeller University University of Puerto Rico University of Wyoming Dalhousie University Dartmouth College Northwestern Univ. Medical School Swiss Federal Institute of Technology, Lausanne (EPFL) Nagoya University National Institutes of Health Harvard Medical School University of Chicago Technical University of Munich University of Texas at Austin Yale University Technion- Israel Institute of Technology, Fac. of Medicine Korea Institution of Science and Technology Jonas Jorgensen Kaczmarek Karlstrom Kaupp Kingston Kittelberger Kovar Lee Elizabeth Erik Leonard Rolf U. Benjamin Alexandra James David Wei-Lih Associate Professor Professor Professor Professor Professor Graduate Student Associate Professor Associate Professor Associate Professor Yale University University of Utah/HHMI Yale University University of Massachusetts Research Center caesar UMBC Gettysburg College The University of Chicago UMass Amherst Llinas Llobet Rodolfo Artur Professor -- Lowe Christopher Assistant Professor Maienschein Malchow Martinez-De Luna Mease Mensinger Miller Mitchison Morfini Nakamura Oakey Pant Parker Pereda Rome Rosa-Molinar Rose Rosen Rosenthal Jane Robert Reyna Rebecca Allen Andrew Timothy Gerardo Tetsuya John Harish C Roy Alberto Lawrence Eduardo Robert Michael Joshua -Associate Professor Postdoc Postdoc Professor Professor Professor Assistant Professor Postdoc Assistant Professor Professor Professor Professor Professor Associate Professor Associate Professor Professor Assistant Professor Rost Benjamin Postdoc Selvin Sloboda Sluder Song Springer Paul Roger Greenfield Yuyu Timothy Professor Professor Professor Postdoc Professor Tamm Terasaki Treistman Vale Watanabe Waterman Wilhelm Wu Sidney Mark Steven Ron Shigeki Clare Jim Hao Professor Associate Professor Professor Professor Postdoc -Associate Professor Professor Younger Zimmerberg Zottoli Meg Joshua Steven Postdoc -Professor New York University School of Medicine Bellvitge Biomedical Research Institute / Univ. Barcelona Hopkins Marine Station of Stanford University Center for Biology and Society University of Illinois at Chicago SUNY Upstate Medical University Technical University of Munich University of Minnesotat Duluth HKUST Harvard Medical School University of Illinois The University of Chicago University of Wyoming NINDS/ NIH Univ of Colorado Albert Einstein College of Medicine University of Pennsylvania University of Puerto Rico-Rio Piedras North Carolina State University UT Southwestern Medical Center Universidad de Puerto Rico/Recinto de Ciencias Medicas German Center for Neurodegenerative Diseases (DZNE) University of Illinois Urbana Champaign Dartmouth College UMass Medical School HHMI/Yale Medical School Childrens Hospital/ Harvard Medical School Marine Biological Laboratory University of Connecticut Health Center Univ. Puerto Rico Medical Sciences UCSF University of Utah National Institutes of Health UC San Diego Boston Children's Hospital and Harvard Medical School UCSF NIH Williams College