Bio‐X Interdisciplinary Initiatives Symposium Poster Session March 11, 2011 POSTER # TITLE 1
Personal Robotics
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Progress towards a telerobotic ultrasound system for real-time volumetric
image guidance in radiation therapy
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A Virtual Surgical Environment for Rehearsal of
Tympanomastoidectomy
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Cell cycle dynamics
Identification and evaluation of inhibitors of store operated calcium
channels using a novel methodology
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Imaging of the intact mouse cochlea by spectral domain optical
coherence tomography
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Proliferation patterns in anther primordia: Germinal and somatic cell fate
acquisition
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Sample dispersion in isotachophoresis
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Three-dimensional tracking of single mRNA particles in S. cerevisiae
using a Double-Helix Point Spread Function
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A Novel Mouse Model of Urinary Schistosomiasis
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Conformational Dynamics of Single G Protein-Coupled Receptors in
Solution
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Dynamics Organization of Actin and Myosin Couple Cell Shape Oscillation with Migration Phenotypes in HL60 Cells
Non-viral Delivery of Inductive and Suppressive Genes to
Adipose-derived Stem Cells for Osteogenic Differentiation
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Biodegradable nanoparticles for sustained-release siRNA delivery
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Nonviral engineered stem cells for therapeutic angiogenesis
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From connectivity to causal interactions: Imaging the interplay between
large-scale neural networks with TMS/fMRI
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AFM measurement of iPS cardiomyocyte contractility
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The CAANDO Process: Renewable Energy from Wastewater Through
Nitrous Oxide
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Stanford Biomedical Optics Group
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Imaging cathepsin activity in a syngeneic mouse model for breast cancer
using a quenched activity-based probe
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Application of activity based probes to the study of legumain during
tumor progression and inflammation
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Commitment to a cellular transition precedes genome-wide
transcriptional change
AUTHORS K. Wyrobek, E. Berger, H.F.M. Van der Loos, K.
Salisbury
Jeffrey Schlosser, Kenneth Salisbury, Dimitre
Hristov
Sonny Chan, MS; Peter Li, MD; Dong Hoon Lee,
MD; Kenneth Salisbury, PhD; Nikolas H.
Blevins, MD
Andreas Doncic, Umut Eser & Jan Skotheim
A. Masoud Sadaghiani, Chan Young Park,
Ricardo Dolmetsch
Simon S. Gao, Tao Yuan, Anping Xia, Patrick
Raphael, Ryan L. Shelton, Brian E. Applegate,
John S. Oghalai
Timothy Kelliher, Virginia Walbot
Giancarlo Garcia-Schwarz, Moran Bercovici,
Lewis A. Marshall, and Juan G. Santiago
Michael Thompson, Jason Casolari, Patrick O.
Brown, W. E. Moerner
Chi-Ling Fu, Anuradha Thathireddy, Giselle
Knudsen, Conor R. Caffrey, James H. McKerrow,
DeBroski Herbert, Kim Thai, Mingqian Xie, and
Michael H. Hsieh
Samuel Bockenhauer, Alexandre Fuerstenberg,
Xiao Jie Yao, Brian K. Kobilka, W. E. Moerner
Tony Y‐C. Tsai, Mike Davidson, James E. Ferrell Jr., Julie Theriot
Ramasubramanian, Anusuya; Shiigi, Stacey; Lee,
Gordon K. (M.D.); Yang, Fan (Ph.D.)
Tatsiana Lobovkina, Gunilla Jacobson, Emilio Gonzalez Gonzalez, Christopher Contag, Richard N.Zare
Lorenzo Deveza MS, Galym Imanbayev, Jerry
Lee BS, Jeffrey Choi, John Cooke MD/PhD, and
Fan Yang PhD
Ashley Chen, Desmond Oathes, Travis Bradley,
Gary Glover, Karl Deisseroth and Amit Etkin
Jianwei Liu Ning Sun, Marc A. Bruce, Joseph C.
Wu, Manish Butte
Yaniv D. Scherson, George F. Wells, Craig S.
Criddle, Brian J. Cantwell
Noy Cohen, Timnit Gebru, Hee Yoon Lee, Kristin
Lurie, Tahereh Marvdashti, Audrey Ellerbee
Martijn Verdoes, Laura E. Edgington, Melissa
Leyva, Ferenc Scheeren, Michael H. Bachmann,
Jonathan A. Ellman and Matthew Bogyo
Laura E. Edgington, Martijn Verdoes, Vasilena
Gocheva, Johanna Joyce, Michael H. Bachmann
and Matthew Bogyo
Umut Eser, Melody Fettig-Falleur, Amy Johnson,
Jan M. Skotheim
23
Can Gaming help Biology? Preliminary results from the EteRNA project
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Simultaneous detection of copy number and copy-neutral variations on
the Agilent’s CGH+SNP microarrays
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DNA hybridization using isotachophoresis
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GRFT - Genetic Records Family Tree Web Applet
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Muscle Fiber Operating Lengths During Walking and Running
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Implementing differential sensors with synthetic RNA controllers
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TEThER: A modular, biomimetic strategy for nanoparticle synthesis
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Versatile synthesis strategy for folate-conjugated [18F]YF3 naoprobes as
PET imaging agents
Spatial gradient of protein phosphorylation underlies replicative
asymmetry in a bacterium
Dissociation between anesthetic effects on gamma EEG
oscillations and inhibitory transmission
Cortical preparatory activity avoids causing movement by remaining in a
muscle-neutral space
GPU Accelerated Quantum Chemistry for Studying Protein Structure,
Function, and Excited States
On- ‐Chip Lysis and ITP Extraction of Malarial DNA Using Printed
Circuit Board Devices
The Adaptive Field and Predictive Object Representation in the Retina
Decoupled and Scalable Cell-cell Communication via Bacteriophage
M13
Engineering High Affinity Knottin Peptides Targeting Tumor Marker
CAIX for Cancer Imaging and Therapy
Anterior neural ridge, zona limitans intrathalamica and isthmic
organizer-like genetic programs regulate anterior-posterior patterning in
the hemichordate Saccoglossus kowalevskii
Industrial Ecology Principles in Biodegradable Plastics Production and
Evaluation
Adhesion Proteins for Mechanotransduction Assays
42
Detector and Front-End Electronics for 1mm^3 Resolution Breast
Dedicated PET System
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Multimode Fiber for Spatial Scanning
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Selection of Methanotrophic Bacteria Capable of High Levels of Polyhydroxybutyrate Production from a Diverse Inoculum
A quantitative sensor of cellular protein aggregation
Superresolution Imaging of Targeted Proteins in Fixed and Living Cells
Using Photoactivatable Organic Fluorophores
Synthetic CT: simulating arbitrary low dose single and dual energy CT
protocols
Study of T Cell Cytoskeleton Stiffness by Atomic Force and
Fluorescence Microscopy
Development of a Constitutive Promoter Library to Evaluate and
Optimize Gene Expression Levels
50
Metallic nanopillars for highly efficient electrical cellular interface
51
On the origin of the trunk. Insides from the unsegmented hemichordate
Saccoglossus kowalevskii
Jeehyung Lee, Daniel Cantu, Snehal Gaikwad,
Wipapat Kladwang, Adrien Treuille, Rhiju Das,
& EteRNA players
Paula Costa, Bo Curry, Brian Peter, Paige
Anderson, Nick Sampas, Shane Giles, Ashutosh
Ashutosh, Jayati Ghosh, Stephanie FulmerSmentek, Anniek De Witte
M. Bercovici, C.M. Han, and J.G. Santiago
Samuel Pimentel, Virginia Walbot, and John
Fernandes
Edith M. Arnold, Samuel R. Hamner, Ajay Seth,
Scott L. Delp
Yen-Hsiang Wang, Christina Smolke
Alia P. Schoen, David T. Schoen, and Sarah C.
Heilshorn
Liqin Xiong, Bin Shen, T. Frederick Chin,
Jianghong Rao
C Tropini, YE Chen, K Jonas, CG Tsokos, KC
Huang, MT Laub
Steve K. Towers, PhD and M. Bruce MacIver,
MSc, PhD
Matthew T Kaufman, Mark M Churchland,
Stephen I Ryu, Krishna V Shenoy
Christine Isborn, Heather Kulik, Nathan Luehr,
Ivan Ufimtsev, and Todd J. Martinez
Lewis Marshall, Lily Wu, Crystal Han, Mark
Bachman, Juan Santiago
David Kastner, Stephen Baccus
Monica E. Ortiz and Drew Endy
Sarah J. Moore and Jennifer R. Cochran
Ariel M. Pani, Erin Mullarkey, Stavroula
Assimacopoulos, Jochanan Aronowicz, Elizabeth
A. Grove, and Christopher J. Lowe
Katherine H. Rostkowski, Michael D. Lepech, and
Craig S. Criddle
E.F. Martin, C. Chung, J.Y. Sim, B. Pruitt
Frances Lau, Arne Vandenbroucke, Paul
Reynolds, Peter Olcott, Mark Horowitz, Craig
Levin
Kristen Boucher, Cathy Jan, Prof. Olav Solgaard,
Prof. Joseph Kahn
Allison J. Pieja, Daisy Zheng, Katherine H.
Rostkowski, Veronica Chau, and Craig S. Criddle
Alexandra Esteras-Chopo and Isabella Graef
Hsiao-lu Lee, Samuel J. Lord, Shigeki Iwanaga,
Ke Zhan, Hexin Xie, Jarrod C. Williams, Hui
Wang, Grant R. Bowman, Erin D. Goley, Lucy
Shapiro, Robert J. Twieg, Jianghong Rao, and W.
E. Moerner
Adam Wang and Norbert Pelc
Marc Bruce, Ghezal Omar, Manish Butte
Joshua Ferreira, Ryan Peacock, Ingrid Lawhorn,
and Clifford Wang
Chong Xie, Lindsey Hanson, Ziliang Lin, Yi Cui,
and Bianxiao Cui
Jens Fritzenwanker, Christopher Lowe
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Cell ultrastructure at the nanopillar-cell interface
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A Septin Diffusion Barrier at the Base of the Primary Cilium Maintains
Ciliary Membrane Protein Distribution
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Toward the Development of a Recombinase-Based Genetic Oscillator
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Synthesis and Characterization of Energetic Materials Made of CuO/Al
Core/Shell Nanowires
Force mediated enzymatic remodeling of proteins at various length
scales
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Efficacy of Antimicrobial Peptoids Against Mycobacterium
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Flame Synthesis and Properties of Metal Oxide Nanomaterials
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Clathrin Self-Assembly on Fluctuating Cell Membranes
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Catalytic oxidation of methane over copper oxide nanowires
Impact of defect creation and motion on the thermodynamics and largescale reorganization of self-assembled clathrin lattices
Musculoskeletal Simulation-based Motion Characterization of an Elite
Golf Performance
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Depth Dependent Transverse Shear Properties of the Corneal Stroma
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Precursor-directed biosynthesis of macrolide antibiotics in E. Coli
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Coaxial-tip piezoresistive scanning probes for high-resolution scanning
gate microscopy
Large-scale synapse classification with array tomography
Solubility Partner IF2 Domain I Enables High Yield Synthesis of
Transducible Transcription Factors in E. coli
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PET imaging of cerebral ischemia-induced neuroinflammation in mice
using 18F-PBR06
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Epigenetic Studies of Aging Pathways Using a Microfluidics Platform
70
Multifaceted Variation in Single Cell Responses to TNF Concentrations
71
Microbial Interspecies Hydrogen Transfer as Revealed by a Novel
Functional Gene Tiling DNA Microarray
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Functional Assessment of Primary and Embryonic Stem Cell-Derived
Cardiomyocytes
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Engineering Ligand-Receptor Interactions Through Addition and
Evolution of a Synthetic Knottin Binding Domain
Investigating Voltage-Gated Sodium Channels Using Saxitoxin-Derived
Molecular Probes
75
Neuroprotection from stroke in the absence of MHCI or PirB
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Optical Deconstruction of Parkinsonian Neural Circuitry
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Nanophotonic optical temporal correlation for positron emission
tomography
Effects of p53 Dynamics on Cell Survival
Environmental Control of Stomatal Development and the Feedback of
Development on Stomatal Physiology
Lindsey Hanson, Chong Xie, Ziliang Lin, Yi Cui,
Bianxiao Cui
Qicong Hu, Ljiljana Milenkovic, Hua Jin,
Matthew P. Scott, Maxence V. Nachury, Elias T.
Spiliotis, W. James Nelson
Wes Overton, Kim Tran, and Cliff Wang
Yuma Ohkura, Shih-Yu Liu, Xiaolin Zheng
Arjun Adhikari, Jack Chai, Armen Mekhdjian,
Alex Dunn
Rinki Kapoor, Patrick R. Eimerman, Jonathan W.
Hardy, Jeffrey D. Cirillo, Christopher H. Contag,
and Annelise E. Barron
Pratap M. Rao, Xiaolin Zheng
Nicholas Cordella, Shafigh Mehraeen, and
Andrew J. Spakowitz
Yunzhe Feng, Pratap M. Rao and Xiaolin Zheng
Shafigh Mehraeen, Nicholas Cordella, Andrew J.
Spakowitz
Emel Demircan, Thor F. Besier and Oussama
Khatib
Steven Petsche, Peter Pinsky, PhD, Marc
Levenston, PhD, Dimitri Chernyak, PhD, Jaime
Martiz, MD
Colin J.B. Harvey, Jody Puglisi, and Chaitan
Khosla
Nahid Harjee, Alexandre Haemmerli, Markus
König, David Goldhaber-Gordon, Beth L. Pruitt
Brad Busse, Kristina Micheva, Stephen Smith
William C. Yang, John P. Welsh, Jieun Lee, John
P. Cooke, James R. Swartz
Frederick M. Lartey, G-One Ahn, Bin Shen ,
Keith-Travis Cord, Tenille Smith, Joshua Y. Chua,
Sahar Rosenblum, Rabindra Tirouvanziam,Theo
Palmer, Raphael Guzman, Frederick T. Chin,
Edward Graves, Billy W.Loo, Jr.
Tiara L.A. Kawahara, Nicole A. Rapicavoli,
Angela R. Wu, Kun Qu, Stephen R. Quake and
Howard Y. Chang
Jacob Hughey, Savas Tay, Timothy Lee, Tomasc
Lipniacki, Stephen Quake, Markus Covert
Ian P.G. Marshall, Dusty R.V. Berggren, Lewis
Semprini, Alfred M. Spormann
Rebecca E. Taylor, Keekyoung Kim, Ning Sun,
Sung-jin Park, Joo Yong Sim, Giovanni Fajardo,
Daniel Bernstein, Joseph C. Wu, and Beth L.
Pruitt
Mihalis Kariolis, Douglas Jones, Kathleen
Hershberger and Jennifer Cochran
Alison Ondrus, William Parsons, Alex Scherer,
Brian Andresen, and Justin Du Bois
GE Barreto, JD Adelson, L Xu, B Brott, Y
Ouyang, T Naserke, M Djurisic, X Xiong, CJ
Shatz, R Giffard
Murtaza Mogri, Viviana Gradinaru, Kimberly R.
Thompson, Jaimie M. Henderson, Karl Deisseroth
Alexander M. Grant, Peter D. Olcott, and Craig S.
Levin
William Noderer, Amy Zou, Clifford Wang
Graham Dow, Joe Berry, Dominique Bergmann
80
Global and local fMRI signals driven by neurons defined optogenetically
by type and wiring
82
Lateral Interactions Shape Early Stages of Visual Perception in
Drosophila
Mechanics of a 2-D clathrin assemblies
83
A comprehensive computational model of Mycoplasma genitalium
84
Optimal Estimation of Location and Orientation of Myosin V Lever Arm
from Focused, Diffraction-limited Images of Single, Doubly-Bound
Fluorophores
85
Role of Canonical Wnt Signaling in Mouse Inner Ear Stem Cells
86
GREAT improves functional interpretation of cis-regulatory regions
87
Quantitative Tracking of Passage and 3D Culture Effects on
Chondrocyte and Fibrochondrocyte Gene Expression
88
Image-Based Fluid-Structure Interaction for Simulation of Blood Flow in
the Large Arteries
89
Optogenetic targeting of genetically- and topologically-defined
components of neural circuits
90
Developing In Vitro Mimics of the Intestinal Stem Cell Niche
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Photon shot noise limits on optical detection of neuronal spikes and
estimation of spike timing
Novel Nanoscale Patch-Clamp Arrays for Probing
Cellular Electrical Activity
93
Extensive simulations of Amyloid beta peptides in Alzheimer's disease
94
Tuning microbial phenotypic variation using bacteriophage integraseexcisionase systems
95
Protein Translocation on Naked and Nucleosomal DNA
96
X-ray-luminescent nanoparticles as biological imaging agents
97
Investigating the role of strawberry notch 2b gene in zebrafish tail
regeneration
98
Parametric Analysis of Strain Effects on Cell-Cell Junctions
99
ATP driven structural transitions in DNA Gyrase
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101
Time-of-Flight capable electro-optical PET detectors for simultaneous
PET/MRI
Degradation of destabilized FKBP12 mutants depends on subcellular
localization
102
Signal amplification via a cascade of DNA-programmable vesicle fusion
103
Prospective Optical Motion Correction for Diffusion Tensor Magnetic
Resonance Imaging
104
Cell cycle commitment
105
Characterizing bacterial magnetosomes for MRI
106
Bistability may allow for wave-like propagation of mitotic activity and
maintain cell synchronization
Remy Durand, Jin Hyung Lee, Viviana Gradinaru,
Feng Zhang, Inbal Goshen, Dae-Shik Kim, Lief E.
Fenno, Charu Ramakrishnan & Karl Deisseroth
Limor Bursztyn, Damon A. Clark, Mark Horowitz,
Mark J. Schnitzer, Thomas R. Clandinin.
Jules VanDersarl and Nick Melosh
Jayodita Sanghvi, Jonathan Karr, Jared Jacobs,
Markus Covert
Jongmin Sung, Kim I. Mortensen, Henrik
Flyvbjerg and James A. Spudich
Zahra Sayyid, Taha Jan, Renjie Chai, Anping Xia,
Donghee Lee, Roel Nusse, Stefan Heller, and Alan
Cheng
Aaron M. Wenger, Cory Y. McLean, Dave Bristor,
Michael Hiller, Shoa L. Clarke, Bruce T. Schaar,
Craig B. Lowe, Gill Bejerano
Son M, Keenan E and Levenston M.
Nan Xiao, Philippe Moireau, C. Alberto Figueroa,
Guanglei Xiong, Jean-Frederic Gerbeau, Charles
A. Taylor
J. Mattis, C. Ramakrishnan, K. Zalocusky, I.
Diester, M. Hyun, C. Perry, C. Bass, and K.
Deisseroth
Rebecca L. Snyder, James Su, PhD, Calvin Kuo,
MD/PhD, Sarah Heilshorn, PhD
Brian A. Wilt, James E. Fitzgerald, Mark J.
Schnitzer
Noureddine Tayebi and Nicholas Melosh
Yu-Shan Lin, Gregory R. Bowman, Kyle A.
Beauchamp, Vijay S. Pande
Pakpoom Subsoontorn, Jerome Bonnet, Drew
Endy
Mario A. Diaz de la Rosa, Elena F. Koslover,
Peter J. Mulligan, Andrew J. Spakowitz
Guillem Pratx, Conroy Sun, Colin Carpenter and
Lei Xing
Shawn Ouyang, Alex Payumo, Sayumi Yamazoe,
Nicholas Panetta, Michael Longaker, and James
Chen
J. Sim, C. Simmons, N. Borghi, W.J. Nelson, and
B. L. Pruitt
Aakash Basu, Lena Koslover, Allyn Schoeffler,
Andrew Spakowitz, James Berger, Zev Bryant
Peter Olcott, Mattew Bienosek, Dr. Craig Levin
Mark A. Sellmyer, Ling-chun Chen, Emily L.
Egeler, Rishi Rakhit, and Thomas J. Wandless
Jonathan C S Leong, Bettina van Lengerich,
Steven G Boxer, Thomas R Clandinin
Murat Aksoy, Christoph Forman, Matus Straka,
Samantha Holdsworth,Stefan Skare1, Juan Santos,
Joachim Hornegger, and Roland Bammer
Andreas Doncic, Melody Fettig, Jan M Skotheim
B. L. Dwyer, L.C. Qian, B. Kalisky, J.R. Kirtley,
K.A. Moler, A. M. Hamilton, M.R. Benoit, A.C.
Matin, and B. K. Rutt
Chang JB, Ferrell JE Jr.